Query 015825
Match_columns 399
No_of_seqs 466 out of 3761
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 01:14:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02772 guanylate kinase 100.0 3.4E-63 7.3E-68 487.7 33.3 393 1-398 1-398 (398)
2 COG0194 Gmk Guanylate kinase [ 100.0 8.1E-31 1.8E-35 232.3 18.1 181 132-317 3-183 (191)
3 COG1162 Predicted GTPases [Gen 100.0 9.8E-32 2.1E-36 255.8 12.6 193 29-225 41-276 (301)
4 COG1125 OpuBA ABC-type proline 100.0 2E-32 4.3E-37 251.9 1.9 221 113-346 7-239 (309)
5 COG3842 PotA ABC-type spermidi 100.0 2.7E-31 5.8E-36 259.9 6.8 225 113-349 11-243 (352)
6 COG3839 MalK ABC-type sugar tr 100.0 2.8E-31 6.1E-36 258.4 1.8 225 114-350 10-241 (338)
7 COG4175 ProV ABC-type proline/ 99.9 1.8E-28 3.8E-33 231.8 7.5 219 113-343 34-265 (386)
8 PRK14737 gmk guanylate kinase; 99.9 8.8E-27 1.9E-31 211.6 18.0 181 132-316 3-184 (186)
9 COG1116 TauB ABC-type nitrate/ 99.9 1.7E-28 3.6E-33 227.2 4.8 192 116-320 12-208 (248)
10 COG1118 CysA ABC-type sulfate/ 99.9 2.3E-28 5.1E-33 230.6 5.7 209 128-347 23-242 (345)
11 COG1126 GlnQ ABC-type polar am 99.9 7.4E-29 1.6E-33 223.9 1.0 218 113-343 8-236 (240)
12 PF00625 Guanylate_kin: Guanyl 99.9 3.4E-25 7.4E-30 200.7 16.2 181 132-315 1-181 (183)
13 smart00072 GuKc Guanylate kina 99.9 3.4E-24 7.3E-29 194.4 18.6 181 133-316 2-182 (184)
14 PRK12288 GTPase RsgA; Reviewed 99.9 5.4E-25 1.2E-29 217.6 13.9 199 23-225 63-317 (347)
15 COG1135 AbcC ABC-type metal io 99.9 1.1E-25 2.4E-30 213.0 5.5 205 126-341 25-240 (339)
16 cd01854 YjeQ_engC YjeQ/EngC. 99.9 2.7E-24 5.9E-29 208.1 14.3 191 31-225 33-273 (287)
17 PRK00098 GTPase RsgA; Reviewed 99.9 6.2E-24 1.4E-28 206.7 15.4 201 21-225 22-276 (298)
18 PRK11432 fbpC ferric transport 99.9 1.7E-25 3.8E-30 222.0 4.3 208 126-345 25-239 (351)
19 TIGR03265 PhnT2 putative 2-ami 99.9 1.9E-25 4.2E-30 222.0 4.2 207 126-344 23-236 (353)
20 COG1127 Ttg2A ABC-type transpo 99.9 1.3E-25 2.8E-30 205.8 0.6 218 112-342 13-244 (263)
21 COG1117 PstB ABC-type phosphat 99.9 3.1E-25 6.8E-30 199.8 2.9 201 128-342 28-247 (253)
22 PRK09452 potA putrescine/sperm 99.9 3.7E-25 8.1E-30 221.3 3.4 208 126-345 33-247 (375)
23 TIGR00157 ribosome small subun 99.9 1.9E-23 4.1E-28 197.8 14.7 188 33-225 1-231 (245)
24 PRK12289 GTPase RsgA; Reviewed 99.9 1.2E-23 2.7E-28 208.0 13.9 156 30-189 49-234 (352)
25 PRK11650 ugpC glycerol-3-phosp 99.9 5.1E-25 1.1E-29 219.2 3.8 208 125-344 22-236 (356)
26 TIGR03258 PhnT 2-aminoethylpho 99.9 7.3E-25 1.6E-29 218.3 3.9 212 122-344 20-240 (362)
27 PRK11607 potG putrescine trans 99.9 6.5E-25 1.4E-29 219.8 3.5 208 125-344 37-251 (377)
28 TIGR01186 proV glycine betaine 99.9 4.7E-25 1E-29 219.4 2.5 214 118-343 4-230 (363)
29 COG4152 ABC-type uncharacteriz 99.9 5.9E-25 1.3E-29 201.5 2.6 205 112-330 7-217 (300)
30 PRK01889 GTPase RsgA; Reviewed 99.9 1.1E-22 2.3E-27 202.5 14.9 131 31-166 67-227 (356)
31 KOG0707 Guanylate kinase [Nucl 99.9 4.7E-22 1E-26 181.7 16.3 189 129-317 33-222 (231)
32 PRK10851 sulfate/thiosulfate t 99.9 5.8E-24 1.3E-28 211.4 4.0 210 123-344 18-238 (353)
33 PRK11000 maltose/maltodextrin 99.9 1.2E-23 2.6E-28 210.5 4.1 212 121-344 17-235 (369)
34 COG1131 CcmA ABC-type multidru 99.9 4.7E-24 1E-28 207.0 -0.0 207 113-331 10-225 (293)
35 COG1120 FepC ABC-type cobalami 99.9 1.1E-23 2.3E-28 198.3 2.4 212 120-343 15-239 (258)
36 TIGR03415 ABC_choXWV_ATP choli 99.9 1.4E-23 3E-28 209.9 3.3 218 113-342 30-264 (382)
37 TIGR02314 ABC_MetN D-methionin 99.9 2E-23 4.4E-28 206.5 4.3 207 122-340 20-238 (343)
38 PRK14738 gmk guanylate kinase; 99.9 3.1E-21 6.7E-26 178.1 18.4 183 131-317 11-195 (206)
39 COG4525 TauB ABC-type taurine 99.9 8.3E-23 1.8E-27 181.8 6.4 177 130-319 28-209 (259)
40 COG3840 ThiQ ABC-type thiamine 99.9 4.8E-23 1E-27 181.4 3.9 193 128-335 20-222 (231)
41 PRK10070 glycine betaine trans 99.9 4.8E-23 1E-27 207.4 3.4 219 113-343 34-265 (400)
42 COG1122 CbiO ABC-type cobalt t 99.9 6.3E-23 1.4E-27 192.2 3.9 197 127-334 24-230 (235)
43 COG1137 YhbG ABC-type (unclass 99.9 1E-22 2.3E-27 181.8 3.4 216 111-340 8-236 (243)
44 COG4555 NatA ABC-type Na+ tran 99.9 3.3E-23 7.2E-28 185.2 -0.5 192 128-333 23-223 (245)
45 TIGR03263 guanyl_kin guanylate 99.9 2.1E-20 4.6E-25 168.3 17.8 179 133-315 1-179 (180)
46 PRK11144 modC molybdate transp 99.9 1.6E-22 3.5E-27 201.2 3.0 205 127-345 18-231 (352)
47 COG0411 LivG ABC-type branched 99.8 2.3E-23 4.9E-28 191.8 -4.1 216 111-338 8-245 (250)
48 PRK13537 nodulation ABC transp 99.8 1.6E-22 3.6E-27 197.5 1.5 203 116-332 16-227 (306)
49 COG1124 DppF ABC-type dipeptid 99.8 7E-22 1.5E-26 181.9 5.5 200 127-338 27-237 (252)
50 COG1136 SalX ABC-type antimicr 99.8 2.6E-22 5.6E-27 185.5 2.0 183 126-320 24-219 (226)
51 TIGR01188 drrA daunorubicin re 99.8 2.9E-22 6.3E-27 195.5 1.2 197 122-331 8-212 (302)
52 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 6.2E-22 1.3E-26 185.6 2.8 195 126-335 23-230 (254)
53 PRK13536 nodulation factor exp 99.8 3.9E-22 8.4E-27 197.4 1.1 205 115-332 49-261 (340)
54 cd03294 ABC_Pro_Gly_Bertaine T 99.8 1.1E-21 2.5E-26 188.2 4.3 215 111-337 28-255 (269)
55 PRK11153 metN DL-methionine tr 99.8 8.1E-22 1.8E-26 195.5 3.3 203 122-336 20-234 (343)
56 COG3638 ABC-type phosphate/pho 99.8 1.3E-21 2.8E-26 179.1 4.1 195 123-329 20-234 (258)
57 cd03261 ABC_Org_Solvent_Resist 99.8 1.9E-21 4.1E-26 182.8 5.3 197 123-331 16-225 (235)
58 PRK00300 gmk guanylate kinase; 99.8 1.4E-19 3.1E-24 166.4 17.4 183 131-317 3-185 (205)
59 TIGR02142 modC_ABC molybdenum 99.8 1.8E-21 4E-26 193.9 4.5 202 126-339 16-228 (354)
60 COG4148 ModC ABC-type molybdat 99.8 2.8E-21 6.2E-26 180.4 4.5 189 132-334 23-220 (352)
61 cd03296 ABC_CysA_sulfate_impor 99.8 2.8E-21 6.1E-26 182.2 4.5 202 122-335 17-229 (239)
62 cd03258 ABC_MetN_methionine_tr 99.8 1.3E-21 2.8E-26 183.7 1.6 199 121-331 19-229 (233)
63 cd03219 ABC_Mj1267_LivG_branch 99.8 4.1E-21 8.9E-26 180.5 4.9 198 123-333 16-233 (236)
64 cd03265 ABC_DrrA DrrA is the A 99.8 3.7E-21 8E-26 179.1 4.1 193 123-327 16-216 (220)
65 TIGR01187 potA spermidine/putr 99.8 1.6E-21 3.6E-26 192.0 1.8 195 138-344 1-202 (325)
66 PRK15079 oligopeptide ABC tran 99.8 3.6E-21 7.8E-26 189.9 2.8 206 123-340 37-259 (331)
67 TIGR01288 nodI ATP-binding ABC 99.8 3.7E-21 7.9E-26 187.8 2.8 197 122-331 19-223 (303)
68 cd03218 ABC_YhbG The ABC trans 99.8 6.3E-21 1.4E-25 178.8 4.1 198 122-332 15-222 (232)
69 TIGR03522 GldA_ABC_ATP gliding 99.8 2.5E-21 5.5E-26 188.8 1.5 198 120-331 15-220 (301)
70 cd03259 ABC_Carb_Solutes_like 99.8 1E-20 2.2E-25 175.2 5.1 190 122-323 15-211 (213)
71 PRK13637 cbiO cobalt transport 99.8 3.9E-21 8.4E-26 186.3 2.2 197 125-333 25-235 (287)
72 COG2884 FtsE Predicted ATPase 99.8 6.4E-21 1.4E-25 169.2 3.4 184 128-324 23-218 (223)
73 cd03269 ABC_putative_ATPase Th 99.8 9.1E-21 2E-25 175.1 4.2 186 125-323 18-208 (210)
74 cd03268 ABC_BcrA_bacitracin_re 99.8 9.3E-21 2E-25 174.8 4.1 188 123-323 16-206 (208)
75 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 1.1E-20 2.3E-25 175.5 4.1 186 122-320 19-217 (218)
76 TIGR00960 3a0501s02 Type II (G 99.8 6.9E-21 1.5E-25 176.7 2.7 185 123-320 19-215 (216)
77 cd03260 ABC_PstB_phosphate_tra 99.8 1E-20 2.2E-25 176.9 3.6 188 126-328 19-225 (227)
78 PRK09536 btuD corrinoid ABC tr 99.8 6.2E-21 1.3E-25 192.2 2.3 210 117-339 13-235 (402)
79 PRK13634 cbiO cobalt transport 99.8 7.3E-21 1.6E-25 184.6 2.4 196 126-334 26-237 (290)
80 COG0410 LivF ABC-type branched 99.8 4.3E-21 9.3E-26 175.5 0.7 203 117-336 13-230 (237)
81 TIGR03740 galliderm_ABC gallid 99.8 1.5E-20 3.2E-25 175.4 4.3 190 126-328 19-209 (223)
82 cd03263 ABC_subfamily_A The AB 99.8 8.8E-21 1.9E-25 176.4 2.6 193 122-328 17-217 (220)
83 cd03226 ABC_cobalt_CbiO_domain 99.8 1.2E-20 2.6E-25 173.8 3.4 183 126-321 19-204 (205)
84 cd03224 ABC_TM1139_LivF_branch 99.8 1.2E-20 2.6E-25 175.7 3.4 193 123-328 16-217 (222)
85 PRK14250 phosphate ABC transpo 99.8 1.5E-20 3.4E-25 177.5 4.2 197 126-335 22-224 (241)
86 PRK13651 cobalt transporter AT 99.8 5.9E-21 1.3E-25 186.4 1.3 195 127-334 27-256 (305)
87 cd03295 ABC_OpuCA_Osmoprotecti 99.8 2.1E-20 4.5E-25 176.6 4.8 197 126-334 20-227 (242)
88 cd03256 ABC_PhnC_transporter A 99.8 1.3E-20 2.8E-25 177.6 3.2 196 122-329 16-231 (241)
89 cd03301 ABC_MalK_N The N-termi 99.8 1.9E-20 4.2E-25 173.2 4.3 187 126-324 19-212 (213)
90 cd03293 ABC_NrtD_SsuB_transpor 99.8 1.3E-20 2.7E-25 175.5 3.0 191 122-325 19-216 (220)
91 TIGR00972 3a0107s01c2 phosphat 99.8 1.4E-20 3E-25 178.3 3.3 198 126-338 20-238 (247)
92 KOG0609 Calcium/calmodulin-dep 99.8 1.1E-18 2.4E-23 174.7 16.6 185 131-317 338-529 (542)
93 COG4604 CeuD ABC-type enteroch 99.8 2.6E-20 5.6E-25 166.2 4.4 220 111-342 5-235 (252)
94 PRK13643 cbiO cobalt transport 99.8 1.1E-20 2.3E-25 183.3 1.6 193 126-332 25-233 (288)
95 cd03266 ABC_NatA_sodium_export 99.8 1.3E-20 2.8E-25 175.0 2.0 189 122-323 20-216 (218)
96 cd03264 ABC_drug_resistance_li 99.8 2E-20 4.3E-25 173.0 3.1 183 126-323 19-209 (211)
97 TIGR00968 3a0106s01 sulfate AB 99.8 2.8E-20 6.1E-25 175.2 4.2 205 126-342 19-230 (237)
98 PRK11264 putative amino-acid A 99.8 2.3E-20 5.1E-25 176.9 3.6 201 122-335 18-236 (250)
99 PRK09493 glnQ glutamine ABC tr 99.8 2.4E-20 5.3E-25 175.8 3.4 201 122-335 16-228 (240)
100 TIGR03005 ectoine_ehuA ectoine 99.8 3.2E-20 7E-25 176.3 4.3 201 126-338 19-242 (252)
101 PRK13646 cbiO cobalt transport 99.8 1.8E-20 3.8E-25 181.6 2.2 194 127-333 27-236 (286)
102 TIGR03410 urea_trans_UrtE urea 99.8 2.1E-20 4.5E-25 175.1 2.6 197 122-330 15-219 (230)
103 PRK14268 phosphate ABC transpo 99.8 1.8E-20 3.9E-25 178.8 2.1 205 122-341 27-251 (258)
104 TIGR02315 ABC_phnC phosphonate 99.8 2.2E-20 4.8E-25 176.3 2.6 195 123-329 18-232 (243)
105 PRK11831 putative ABC transpor 99.8 4.2E-20 9.2E-25 177.3 4.3 202 121-334 21-235 (269)
106 TIGR02211 LolD_lipo_ex lipopro 99.8 3.2E-20 6.9E-25 172.8 3.0 188 122-322 20-220 (221)
107 TIGR02673 FtsE cell division A 99.8 3.9E-20 8.4E-25 171.3 3.5 181 126-319 21-213 (214)
108 PRK13647 cbiO cobalt transport 99.8 2.8E-20 6.1E-25 179.1 2.5 190 126-328 24-223 (274)
109 PRK13650 cbiO cobalt transport 99.8 2.2E-20 4.8E-25 180.3 1.7 195 126-333 26-230 (279)
110 PRK11308 dppF dipeptide transp 99.8 3.3E-20 7.2E-25 182.8 2.9 205 124-340 32-252 (327)
111 cd03298 ABC_ThiQ_thiamine_tran 99.8 3.5E-20 7.5E-25 171.4 2.8 184 128-323 19-209 (211)
112 PRK09473 oppD oligopeptide tra 99.8 2.1E-20 4.6E-25 184.4 1.5 209 122-341 31-260 (330)
113 PRK11022 dppD dipeptide transp 99.8 2.8E-20 6.1E-25 183.3 2.2 208 122-340 22-251 (326)
114 COG4598 HisP ABC-type histidin 99.8 8.1E-20 1.7E-24 160.8 4.8 220 111-343 10-252 (256)
115 PRK11629 lolD lipoprotein tran 99.8 5.1E-20 1.1E-24 173.0 3.7 190 122-324 24-226 (233)
116 cd03300 ABC_PotA_N PotA is an 99.8 6.8E-20 1.5E-24 172.1 4.5 198 126-335 19-223 (232)
117 PRK11248 tauB taurine transpor 99.8 5.4E-20 1.2E-24 175.3 3.8 191 123-326 17-214 (255)
118 TIGR03411 urea_trans_UrtD urea 99.8 4.9E-20 1.1E-24 173.9 3.3 197 122-332 17-231 (242)
119 cd03292 ABC_FtsE_transporter F 99.8 3.3E-20 7.1E-25 171.7 2.1 182 126-320 20-213 (214)
120 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 4.2E-20 9E-25 173.9 2.7 196 123-331 17-220 (236)
121 PRK10619 histidine/lysine/argi 99.8 6.1E-20 1.3E-24 175.0 3.4 202 122-336 20-245 (257)
122 PRK11300 livG leucine/isoleuci 99.8 5.8E-20 1.3E-24 174.7 3.0 200 122-333 20-244 (255)
123 PRK13652 cbiO cobalt transport 99.8 4.4E-20 9.5E-25 178.0 2.2 197 126-334 23-229 (277)
124 cd03225 ABC_cobalt_CbiO_domain 99.8 6.9E-20 1.5E-24 169.3 3.3 184 123-319 17-210 (211)
125 PRK11247 ssuB aliphatic sulfon 99.8 5.3E-20 1.2E-24 175.5 2.6 187 125-326 30-217 (257)
126 PRK13636 cbiO cobalt transport 99.8 4.5E-20 9.8E-25 178.5 2.1 196 126-333 25-232 (283)
127 PRK13635 cbiO cobalt transport 99.8 4.2E-20 9E-25 178.4 1.8 194 126-332 26-229 (279)
128 PRK10895 lipopolysaccharide AB 99.8 1E-19 2.3E-24 171.6 4.3 200 121-333 17-227 (241)
129 PRK10908 cell division protein 99.8 6.2E-20 1.4E-24 171.0 2.8 185 126-323 21-217 (222)
130 PRK13641 cbiO cobalt transport 99.8 3.8E-20 8.3E-25 179.3 1.4 194 126-332 26-234 (287)
131 cd03267 ABC_NatA_like Similar 99.8 7.5E-20 1.6E-24 172.3 3.2 197 115-323 29-234 (236)
132 PRK15112 antimicrobial peptide 99.8 9.7E-20 2.1E-24 174.7 4.0 207 122-340 28-247 (267)
133 PRK13644 cbiO cobalt transport 99.8 4.3E-20 9.4E-25 177.8 1.2 195 126-334 21-226 (274)
134 TIGR02769 nickel_nikE nickel i 99.8 1.6E-19 3.4E-24 173.0 5.0 200 121-332 25-240 (265)
135 PRK14273 phosphate ABC transpo 99.8 4.7E-20 1E-24 175.4 1.5 201 125-340 25-246 (254)
136 PRK14247 phosphate ABC transpo 99.8 6.3E-20 1.4E-24 174.1 2.3 200 122-335 18-237 (250)
137 PRK14270 phosphate ABC transpo 99.8 6.4E-20 1.4E-24 174.2 2.1 204 123-341 20-244 (251)
138 PRK15093 antimicrobial peptide 99.8 9.1E-20 2E-24 180.0 3.2 205 122-338 22-254 (330)
139 PRK13631 cbiO cobalt transport 99.8 5.7E-20 1.2E-24 180.6 1.7 194 127-334 46-267 (320)
140 PRK14267 phosphate ABC transpo 99.8 7.1E-20 1.5E-24 174.0 2.2 200 122-335 19-240 (253)
141 COG1123 ATPase components of v 99.8 1.4E-19 3E-24 185.0 4.3 203 127-342 311-529 (539)
142 TIGR02770 nickel_nikD nickel i 99.8 9.1E-20 2E-24 171.0 2.7 198 129-338 8-221 (230)
143 cd03257 ABC_NikE_OppD_transpor 99.8 1.5E-19 3.2E-24 168.9 4.0 190 122-323 20-226 (228)
144 PRK14242 phosphate transporter 99.8 1E-19 2.2E-24 173.0 3.0 203 123-340 22-245 (253)
145 PRK13548 hmuV hemin importer A 99.8 1.1E-19 2.4E-24 173.4 3.0 199 122-332 17-230 (258)
146 PRK10584 putative ABC transpor 99.8 1.2E-19 2.7E-24 169.7 3.0 187 123-322 26-225 (228)
147 PRK11124 artP arginine transpo 99.8 1.4E-19 3E-24 170.9 3.2 195 122-329 17-227 (242)
148 PRK13640 cbiO cobalt transport 99.8 8.1E-20 1.8E-24 176.6 1.7 194 127-333 27-233 (282)
149 cd03262 ABC_HisP_GlnQ_permease 99.8 1.2E-19 2.6E-24 167.8 2.7 183 125-320 18-212 (213)
150 COG0444 DppD ABC-type dipeptid 99.8 1.2E-19 2.7E-24 173.7 2.7 204 127-341 25-252 (316)
151 PRK13633 cobalt transporter AT 99.8 1.2E-19 2.6E-24 175.2 2.6 198 122-332 25-233 (280)
152 PRK10744 pstB phosphate transp 99.8 7.8E-20 1.7E-24 174.6 1.2 203 123-340 29-252 (260)
153 PRK13639 cbiO cobalt transport 99.8 1.6E-19 3.4E-24 174.0 3.2 195 126-333 21-227 (275)
154 cd03235 ABC_Metallic_Cations A 99.8 5.7E-20 1.2E-24 170.2 0.1 187 121-319 13-208 (213)
155 PRK13638 cbiO cobalt transport 99.8 1E-19 2.2E-24 174.9 1.8 193 128-333 22-226 (271)
156 PRK13648 cbiO cobalt transport 99.8 1.1E-19 2.3E-24 174.6 1.9 196 126-334 28-233 (269)
157 PRK10261 glutathione transport 99.8 1.3E-19 2.9E-24 193.0 2.7 205 124-340 341-561 (623)
158 PRK10253 iron-enterobactin tra 99.8 9.6E-20 2.1E-24 174.5 1.4 200 121-332 21-233 (265)
159 PRK13649 cbiO cobalt transport 99.8 1.4E-19 3.1E-24 174.6 2.5 192 127-332 27-234 (280)
160 cd03297 ABC_ModC_molybdenum_tr 99.8 7.9E-20 1.7E-24 169.4 0.7 186 125-323 16-212 (214)
161 PRK13645 cbiO cobalt transport 99.8 1.9E-19 4.1E-24 174.6 3.3 196 126-334 30-242 (289)
162 PRK11614 livF leucine/isoleuci 99.8 7.3E-20 1.6E-24 172.3 0.3 197 123-332 21-226 (237)
163 PRK14259 phosphate ABC transpo 99.8 2.3E-19 4.9E-24 172.3 3.7 201 121-336 27-257 (269)
164 PRK10771 thiQ thiamine transpo 99.8 1.4E-19 3E-24 169.9 2.1 195 128-334 20-221 (232)
165 COG4161 ArtP ABC-type arginine 99.8 2.1E-19 4.6E-24 155.6 2.9 199 128-340 23-237 (242)
166 PRK14241 phosphate transporter 99.8 1E-19 2.2E-24 173.5 1.1 202 123-338 20-248 (258)
167 PRK14256 phosphate ABC transpo 99.8 2.3E-19 4.9E-24 170.5 3.4 205 122-340 19-244 (252)
168 PRK10575 iron-hydroxamate tran 99.8 1.3E-19 2.9E-24 173.5 1.8 200 121-332 25-237 (265)
169 PRK15439 autoinducer 2 ABC tra 99.8 1.7E-19 3.8E-24 188.0 2.5 197 121-330 25-227 (510)
170 TIGR01184 ntrCD nitrate transp 99.8 2.1E-19 4.5E-24 168.6 2.6 186 130-328 8-200 (230)
171 PRK13642 cbiO cobalt transport 99.8 2E-19 4.4E-24 173.4 2.4 196 126-334 26-231 (277)
172 PRK11231 fecE iron-dicitrate t 99.8 1.8E-19 4E-24 171.5 2.1 199 121-332 16-227 (255)
173 PRK10762 D-ribose transporter 99.8 4.7E-19 1E-23 184.4 5.1 196 121-329 18-227 (501)
174 PRK10261 glutathione transport 99.8 2.3E-19 5E-24 191.2 2.8 202 122-335 31-261 (623)
175 TIGR01277 thiQ thiamine ABC tr 99.8 2.6E-19 5.5E-24 165.9 2.6 186 128-325 19-211 (213)
176 PRK14251 phosphate ABC transpo 99.8 2.9E-19 6.2E-24 169.6 3.0 200 126-340 23-243 (251)
177 PRK13632 cbiO cobalt transport 99.8 2.6E-19 5.7E-24 172.0 2.5 196 126-334 28-233 (271)
178 PRK14239 phosphate transporter 99.7 2.3E-19 5E-24 170.3 2.0 200 126-340 24-244 (252)
179 PRK14274 phosphate ABC transpo 99.7 3.2E-19 6.9E-24 170.2 3.0 204 122-340 27-251 (259)
180 PRK14240 phosphate transporter 99.7 2.2E-19 4.8E-24 170.3 1.8 202 124-340 20-242 (250)
181 COG4181 Predicted ABC-type tra 99.7 5.9E-19 1.3E-23 154.2 4.2 185 126-323 29-226 (228)
182 PRK14248 phosphate ABC transpo 99.7 2.6E-19 5.6E-24 171.7 2.1 203 122-339 36-259 (268)
183 cd03299 ABC_ModC_like Archeal 99.7 2.9E-19 6.3E-24 168.2 2.4 196 127-334 19-221 (235)
184 PRK14258 phosphate ABC transpo 99.7 3.6E-19 7.9E-24 170.1 2.7 205 123-340 23-253 (261)
185 PRK14237 phosphate transporter 99.7 4.1E-19 8.9E-24 170.3 2.9 201 122-337 35-256 (267)
186 PRK14253 phosphate ABC transpo 99.7 3.6E-19 7.8E-24 168.8 2.4 203 121-338 17-239 (249)
187 PRK14235 phosphate transporter 99.7 4E-19 8.6E-24 170.4 2.8 202 121-337 33-256 (267)
188 TIGR03608 L_ocin_972_ABC putat 99.7 1.4E-19 3E-24 166.5 -0.4 179 122-314 13-204 (206)
189 PRK11701 phnK phosphonate C-P 99.7 6.3E-19 1.4E-23 168.1 4.0 199 125-335 24-244 (258)
190 PRK15134 microcin C ABC transp 99.7 5.5E-19 1.2E-23 185.1 3.9 203 123-338 302-521 (529)
191 PRK14271 phosphate ABC transpo 99.7 3.3E-19 7.1E-24 171.8 2.0 207 120-341 34-260 (276)
192 PRK09984 phosphonate/organopho 99.7 4.3E-19 9.4E-24 169.6 2.6 196 122-329 19-239 (262)
193 PRK14245 phosphate ABC transpo 99.7 4.5E-19 9.7E-24 168.3 2.7 201 125-340 21-242 (250)
194 cd00071 GMPK Guanosine monopho 99.7 1.6E-17 3.4E-22 143.7 12.0 120 135-254 1-120 (137)
195 PRK13549 xylose transporter AT 99.7 8.1E-19 1.8E-23 182.9 4.5 198 120-330 18-230 (506)
196 PRK14272 phosphate ABC transpo 99.7 4.7E-19 1E-23 168.2 2.4 203 122-338 19-242 (252)
197 PRK14269 phosphate ABC transpo 99.7 4.6E-19 9.9E-24 167.9 2.2 202 122-338 17-236 (246)
198 PRK14238 phosphate transporter 99.7 3.3E-19 7.2E-24 171.3 1.1 199 127-340 44-263 (271)
199 PRK14249 phosphate ABC transpo 99.7 3.7E-19 8E-24 169.0 1.4 201 126-341 23-244 (251)
200 TIGR03771 anch_rpt_ABC anchore 99.7 7.7E-19 1.7E-23 164.0 3.5 189 131-332 4-201 (223)
201 PRK14255 phosphate ABC transpo 99.7 4.7E-19 1E-23 168.3 2.0 203 121-338 19-242 (252)
202 PRK14243 phosphate transporter 99.7 5.5E-19 1.2E-23 169.2 2.5 204 122-340 25-256 (264)
203 PRK10418 nikD nickel transport 99.7 7.3E-19 1.6E-23 167.3 3.2 198 127-335 23-233 (254)
204 TIGR03873 F420-0_ABC_ATP propo 99.7 4.7E-19 1E-23 168.8 1.8 198 122-332 16-226 (256)
205 PRK09700 D-allose transporter 99.7 7.3E-19 1.6E-23 183.4 3.3 197 121-330 19-232 (510)
206 TIGR02323 CP_lyasePhnK phospho 99.7 1.1E-18 2.3E-23 165.9 4.1 201 123-335 19-241 (253)
207 PRK14257 phosphate ABC transpo 99.7 5.9E-19 1.3E-23 174.0 2.3 202 126-342 101-323 (329)
208 TIGR01978 sufC FeS assembly AT 99.7 1.1E-18 2.3E-23 164.7 4.0 195 121-328 14-230 (243)
209 PRK14262 phosphate ABC transpo 99.7 5.8E-19 1.2E-23 167.5 2.0 198 123-335 19-237 (250)
210 TIGR03269 met_CoM_red_A2 methy 99.7 6.6E-19 1.4E-23 184.1 2.6 198 121-330 14-256 (520)
211 PRK14246 phosphate ABC transpo 99.7 5.8E-19 1.3E-23 168.4 1.9 211 115-339 18-248 (257)
212 PRK14261 phosphate ABC transpo 99.7 7.4E-19 1.6E-23 167.1 2.4 200 122-336 21-241 (253)
213 PRK14244 phosphate ABC transpo 99.7 9.8E-19 2.1E-23 166.0 3.0 198 124-336 22-241 (251)
214 PRK14260 phosphate ABC transpo 99.7 8.7E-19 1.9E-23 167.3 2.4 200 126-340 26-251 (259)
215 cd03234 ABCG_White The White s 99.7 5.2E-19 1.1E-23 165.3 0.6 184 127-323 27-224 (226)
216 PRK13547 hmuV hemin importer A 99.7 1.1E-18 2.4E-23 167.8 2.8 199 122-332 16-244 (272)
217 TIGR02982 heterocyst_DevA ABC 99.7 1.5E-18 3.3E-23 161.6 3.6 186 122-320 20-218 (220)
218 PRK14263 phosphate ABC transpo 99.7 1.2E-18 2.6E-23 166.6 3.0 203 118-335 19-248 (261)
219 PRK09544 znuC high-affinity zi 99.7 1.4E-18 3E-23 165.3 3.3 191 123-334 20-211 (251)
220 PRK14236 phosphate transporter 99.7 1.4E-18 3.1E-23 167.0 3.3 204 122-340 40-264 (272)
221 PRK14275 phosphate ABC transpo 99.7 1.1E-18 2.5E-23 169.0 2.6 200 122-336 54-274 (286)
222 PRK10982 galactose/methyl gala 99.7 1.7E-18 3.6E-23 179.9 4.0 195 122-329 13-220 (491)
223 PRK14254 phosphate ABC transpo 99.7 1.3E-18 2.7E-23 168.5 2.8 202 122-338 54-275 (285)
224 cd03252 ABCC_Hemolysin The ABC 99.7 8.2E-19 1.8E-23 165.0 1.5 189 126-332 21-225 (237)
225 PRK14265 phosphate ABC transpo 99.7 1.1E-18 2.4E-23 168.0 2.3 204 121-339 34-265 (274)
226 cd03251 ABCC_MsbA MsbA is an e 99.7 9.2E-19 2E-23 164.3 1.6 186 127-330 22-223 (234)
227 PRK15134 microcin C ABC transp 99.7 1.6E-18 3.4E-23 181.7 3.1 201 122-334 24-248 (529)
228 cd03230 ABC_DR_subfamily_A Thi 99.7 8.9E-19 1.9E-23 157.2 1.1 151 126-320 19-172 (173)
229 PRK10419 nikE nickel transport 99.7 1.7E-18 3.7E-23 166.1 2.6 199 122-332 27-241 (268)
230 TIGR03269 met_CoM_red_A2 methy 99.7 1.7E-18 3.6E-23 181.1 2.6 188 129-329 306-514 (520)
231 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 1.8E-18 4E-23 161.6 2.6 191 112-323 27-222 (224)
232 cd03237 ABC_RNaseL_inhibitor_d 99.7 1.8E-18 3.9E-23 164.0 2.6 172 129-320 21-193 (246)
233 COG1123 ATPase components of v 99.7 2E-18 4.3E-23 176.5 2.5 204 125-340 27-252 (539)
234 TIGR01166 cbiO cobalt transpor 99.7 1.9E-18 4E-23 157.3 2.1 166 126-305 11-189 (190)
235 cd03215 ABC_Carb_Monos_II This 99.7 1.7E-18 3.7E-23 156.6 1.8 155 126-320 19-181 (182)
236 cd03229 ABC_Class3 This class 99.7 1.2E-18 2.6E-23 157.1 0.7 153 126-319 19-177 (178)
237 cd03233 ABC_PDR_domain1 The pl 99.7 2.6E-18 5.6E-23 158.1 2.8 171 123-323 23-200 (202)
238 PRK03695 vitamin B12-transport 99.7 2.8E-18 6E-23 162.9 2.7 192 128-333 17-223 (248)
239 TIGR01257 rim_protein retinal- 99.7 1.6E-18 3.4E-23 200.6 1.0 190 128-330 1960-2157(2272)
240 COG4586 ABC-type uncharacteriz 99.7 1.3E-18 2.8E-23 162.3 0.2 190 128-330 45-244 (325)
241 PRK11288 araG L-arabinose tran 99.7 5.2E-18 1.1E-22 176.6 4.5 191 122-325 19-222 (501)
242 PRK10247 putative ABC transpor 99.7 3.2E-18 6.9E-23 160.0 2.6 182 122-317 22-211 (225)
243 cd03254 ABCC_Glucan_exporter_l 99.7 2.7E-18 5.8E-23 160.7 1.8 182 128-327 24-221 (229)
244 PRK13543 cytochrome c biogenes 99.7 4.7E-18 1E-22 157.7 3.4 183 122-317 26-211 (214)
245 cd03232 ABC_PDR_domain2 The pl 99.7 1.9E-18 4.2E-23 157.7 0.5 163 124-323 24-190 (192)
246 cd03213 ABCG_EPDR ABCG transpo 99.7 1.6E-18 3.5E-23 158.5 -0.0 161 126-323 28-192 (194)
247 cd03289 ABCC_CFTR2 The CFTR su 99.7 2.6E-18 5.6E-23 165.4 1.3 187 128-334 25-227 (275)
248 TIGR02324 CP_lyasePhnL phospho 99.7 7E-18 1.5E-22 157.4 4.2 182 122-316 23-222 (224)
249 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 4.8E-18 1E-22 159.9 3.0 185 128-330 24-224 (238)
250 TIGR02633 xylG D-xylose ABC tr 99.7 6.5E-18 1.4E-22 175.8 4.2 194 122-328 16-226 (500)
251 COG1129 MglA ABC-type sugar tr 99.7 2.7E-18 5.8E-23 174.4 1.2 202 112-326 13-228 (500)
252 cd03369 ABCC_NFT1 Domain 2 of 99.7 2.4E-18 5.3E-23 158.6 0.8 174 128-326 29-206 (207)
253 COG3845 ABC-type uncharacteriz 99.7 5.5E-18 1.2E-22 169.4 3.3 186 128-326 25-223 (501)
254 PRK14252 phosphate ABC transpo 99.7 5.1E-18 1.1E-22 162.5 2.9 202 122-338 31-255 (265)
255 PRK13539 cytochrome c biogenes 99.7 3.3E-18 7.2E-23 157.9 1.5 179 123-316 18-198 (207)
256 PRK13538 cytochrome c biogenes 99.7 5.6E-18 1.2E-22 156.0 2.8 173 122-307 16-193 (204)
257 PRK11288 araG L-arabinose tran 99.7 5E-18 1.1E-22 176.7 2.3 186 130-328 276-481 (501)
258 PRK14266 phosphate ABC transpo 99.7 5.4E-18 1.2E-22 160.8 2.0 203 122-339 18-241 (250)
259 COG2274 SunT ABC-type bacterio 99.7 4.8E-18 1E-22 181.4 1.5 188 129-334 495-698 (709)
260 PRK10762 D-ribose transporter 99.7 8.4E-18 1.8E-22 175.0 3.1 187 130-329 275-481 (501)
261 cd03245 ABCC_bacteriocin_expor 99.7 2.8E-18 6E-23 159.6 -0.5 178 128-323 25-218 (220)
262 cd03231 ABC_CcmA_heme_exporter 99.7 6.8E-18 1.5E-22 155.1 2.1 175 126-315 19-197 (201)
263 TIGR01257 rim_protein retinal- 99.7 4.7E-18 1E-22 196.7 1.2 196 121-330 944-1147(2272)
264 PRK11174 cysteine/glutathione 99.7 5.1E-18 1.1E-22 179.9 1.1 189 126-333 369-573 (588)
265 cd03253 ABCC_ATM1_transporter 99.7 7.1E-18 1.5E-22 158.5 1.8 186 127-330 21-222 (236)
266 COG4988 CydD ABC-type transpor 99.7 7.6E-18 1.7E-22 171.8 2.0 187 128-333 342-544 (559)
267 PRK09700 D-allose transporter 99.7 6.7E-18 1.5E-22 176.1 1.4 185 130-327 286-493 (510)
268 PRK14264 phosphate ABC transpo 99.7 1E-17 2.3E-22 163.7 2.5 197 127-338 65-295 (305)
269 cd03246 ABCC_Protease_Secretio 99.7 5E-18 1.1E-22 152.4 0.1 146 128-320 23-172 (173)
270 PRK13546 teichoic acids export 99.7 1.3E-17 2.7E-22 159.8 2.7 186 125-332 42-232 (264)
271 cd03248 ABCC_TAP TAP, the Tran 99.7 7.9E-18 1.7E-22 157.2 1.1 175 128-320 35-225 (226)
272 PRK13549 xylose transporter AT 99.7 1E-17 2.2E-22 174.7 2.0 189 128-329 283-491 (506)
273 PLN03211 ABC transporter G-25; 99.7 7.7E-18 1.7E-22 180.0 1.1 203 115-330 76-294 (659)
274 COG4172 ABC-type uncharacteriz 99.7 1.7E-17 3.6E-22 162.0 3.0 202 126-341 306-525 (534)
275 PRK10790 putative multidrug tr 99.7 9.8E-18 2.1E-22 177.9 1.4 189 126-333 360-564 (592)
276 PRK15056 manganese/iron transp 99.7 1E-17 2.2E-22 161.2 1.3 199 122-332 22-230 (272)
277 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 9.5E-18 2.1E-22 180.9 1.3 187 126-333 472-674 (686)
278 CHL00131 ycf16 sulfate ABC tra 99.7 2.9E-17 6.2E-22 155.9 4.3 194 122-328 22-237 (252)
279 TIGR01189 ccmA heme ABC export 99.7 1.3E-17 2.8E-22 152.8 1.7 172 122-306 15-190 (198)
280 PRK10938 putative molybdenum t 99.7 1.1E-17 2.5E-22 173.6 1.6 195 124-331 20-223 (490)
281 PRK11176 lipid transporter ATP 99.7 1.2E-17 2.6E-22 176.9 1.5 189 128-333 364-568 (582)
282 cd03244 ABCC_MRP_domain2 Domai 99.7 8.6E-18 1.9E-22 156.4 -0.1 179 128-325 25-219 (221)
283 cd03247 ABCC_cytochrome_bd The 99.7 5.5E-18 1.2E-22 152.7 -1.5 152 127-323 22-176 (178)
284 KOG0055 Multidrug/pheromone ex 99.7 1.9E-17 4.1E-22 180.9 2.2 188 129-335 375-579 (1228)
285 COG1134 TagH ABC-type polysacc 99.7 6.1E-17 1.3E-21 149.6 5.1 183 128-331 48-235 (249)
286 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 2.5E-17 5.4E-22 178.4 2.9 186 128-333 500-701 (710)
287 PRK15177 Vi polysaccharide exp 99.7 1.9E-17 4.2E-22 153.6 1.6 178 128-328 8-188 (213)
288 COG4619 ABC-type uncharacteriz 99.7 2.5E-17 5.5E-22 143.7 2.2 190 118-321 14-212 (223)
289 TIGR02633 xylG D-xylose ABC tr 99.7 2.5E-17 5.4E-22 171.5 2.5 186 128-326 281-486 (500)
290 PRK11160 cysteine/glutathione 99.7 1.3E-17 2.9E-22 176.3 0.5 189 126-333 359-563 (574)
291 cd03217 ABC_FeS_Assembly ABC-t 99.7 3.4E-17 7.3E-22 150.4 2.9 162 125-325 18-187 (200)
292 cd03216 ABC_Carb_Monos_I This 99.7 2.6E-17 5.6E-22 146.4 2.0 138 126-322 19-161 (163)
293 PRK15439 autoinducer 2 ABC tra 99.7 2.2E-17 4.8E-22 172.2 1.6 188 130-330 286-490 (510)
294 TIGR03375 type_I_sec_LssB type 99.6 3.1E-17 6.7E-22 177.2 2.4 187 127-331 485-687 (694)
295 COG4608 AppF ABC-type oligopep 99.6 5.8E-17 1.3E-21 152.3 3.7 176 127-341 33-208 (268)
296 PRK11819 putative ABC transpor 99.6 4.2E-17 9.2E-22 171.8 2.9 186 120-328 20-246 (556)
297 cd03250 ABCC_MRP_domain1 Domai 99.6 2.9E-17 6.3E-22 151.1 1.3 171 122-319 20-203 (204)
298 PRK13541 cytochrome c biogenes 99.6 4.2E-17 9.2E-22 149.1 2.4 168 126-307 19-187 (195)
299 cd03228 ABCC_MRP_Like The MRP 99.6 1.6E-17 3.5E-22 148.8 -0.5 144 128-319 23-170 (171)
300 PRK10078 ribose 1,5-bisphospho 99.6 8.8E-15 1.9E-19 132.9 17.5 174 133-317 2-177 (186)
301 PRK13540 cytochrome c biogenes 99.6 6.4E-17 1.4E-21 148.5 3.4 171 122-306 16-190 (200)
302 KOG0058 Peptide exporter, ABC 99.6 2.2E-17 4.8E-22 171.6 0.4 187 130-334 491-693 (716)
303 PRK09580 sufC cysteine desulfu 99.6 1.1E-16 2.4E-21 151.4 5.0 194 122-328 16-231 (248)
304 TIGR01193 bacteriocin_ABC ABC- 99.6 2.9E-17 6.4E-22 177.7 0.9 187 128-332 495-697 (708)
305 cd03214 ABC_Iron-Siderophores_ 99.6 2E-17 4.4E-22 149.3 -0.3 158 125-323 17-178 (180)
306 cd03288 ABCC_SUR2 The SUR doma 99.6 3E-17 6.5E-22 156.6 0.7 188 126-332 40-243 (257)
307 PRK10535 macrolide transporter 99.6 7.1E-17 1.5E-21 172.8 3.3 196 122-331 23-231 (648)
308 COG1132 MdlB ABC-type multidru 99.6 6.1E-17 1.3E-21 171.0 2.4 187 129-333 351-553 (567)
309 PRK13657 cyclic beta-1,2-gluca 99.6 4.3E-17 9.2E-22 172.9 0.6 188 126-331 354-557 (588)
310 PRK10982 galactose/methyl gala 99.6 8.7E-17 1.9E-21 167.0 2.9 188 130-326 271-474 (491)
311 PRK15064 ABC transporter ATP-b 99.6 5.8E-17 1.3E-21 169.9 1.4 177 128-328 340-521 (530)
312 PRK13409 putative ATPase RIL; 99.6 5.2E-17 1.1E-21 171.6 1.0 175 129-326 361-536 (590)
313 PRK13545 tagH teichoic acids e 99.6 5.8E-17 1.3E-21 166.4 1.0 184 126-331 43-231 (549)
314 cd03223 ABCD_peroxisomal_ALDP 99.6 5.6E-17 1.2E-21 144.7 0.6 144 125-318 19-162 (166)
315 TIGR01846 type_I_sec_HlyB type 99.6 8.8E-17 1.9E-21 173.6 1.6 189 128-334 478-682 (694)
316 TIGR00958 3a01208 Conjugate Tr 99.6 6.1E-17 1.3E-21 175.2 0.1 187 127-333 501-703 (711)
317 cd03222 ABC_RNaseL_inhibitor T 99.6 5.6E-17 1.2E-21 146.1 -0.2 131 128-321 20-150 (177)
318 PRK10789 putative multidrug tr 99.6 7.8E-17 1.7E-21 170.3 0.8 189 128-334 336-540 (569)
319 cd03290 ABCC_SUR1_N The SUR do 99.6 1.1E-16 2.3E-21 148.9 1.6 175 127-319 21-217 (218)
320 COG1101 PhnK ABC-type uncharac 99.6 1.7E-16 3.6E-21 143.7 2.8 195 128-333 27-239 (263)
321 TIGR01842 type_I_sec_PrtD type 99.6 1.3E-16 2.8E-21 167.7 2.4 186 128-330 339-540 (544)
322 PRK15064 ABC transporter ATP-b 99.6 1.9E-16 4E-21 166.1 3.5 187 121-330 15-240 (530)
323 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 2E-16 4.4E-21 166.6 2.7 185 121-328 19-244 (552)
324 COG4172 ABC-type uncharacteriz 99.6 9.2E-16 2E-20 149.9 6.8 202 128-340 31-255 (534)
325 TIGR01192 chvA glucan exporter 99.6 9.4E-17 2E-21 170.1 -0.1 188 128-333 356-559 (585)
326 TIGR02204 MsbA_rel ABC transpo 99.6 1.4E-16 3.1E-21 168.4 1.2 186 128-331 361-562 (576)
327 TIGR02203 MsbA_lipidA lipid A 99.6 1E-16 2.2E-21 169.3 -0.0 188 128-332 353-556 (571)
328 KOG0057 Mitochondrial Fe/S clu 99.6 1.6E-16 3.4E-21 160.5 0.7 186 128-332 373-574 (591)
329 COG4136 ABC-type uncharacteriz 99.6 1.4E-16 3.1E-21 136.6 0.0 177 120-307 15-199 (213)
330 COG4674 Uncharacterized ABC-ty 99.6 4.5E-16 9.7E-21 139.0 3.2 199 129-340 27-243 (249)
331 PRK10938 putative molybdenum t 99.6 6E-16 1.3E-20 160.7 4.6 189 126-324 279-484 (490)
332 TIGR00955 3a01204 The Eye Pigm 99.6 1.9E-16 4.2E-21 168.7 0.9 196 122-330 40-254 (617)
333 COG4559 ABC-type hemin transpo 99.6 3.5E-16 7.6E-21 141.3 2.4 199 129-341 23-239 (259)
334 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 3E-16 6.4E-21 165.3 2.1 172 128-322 343-520 (552)
335 PRK11819 putative ABC transpor 99.6 3.5E-16 7.5E-21 164.9 2.5 174 126-322 343-522 (556)
336 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 2.6E-16 5.7E-21 137.1 0.5 124 127-319 20-143 (144)
337 COG4987 CydC ABC-type transpor 99.6 3.3E-16 7.2E-21 158.0 1.2 187 129-333 360-562 (573)
338 KOG0059 Lipid exporter ABCA1 a 99.6 1.1E-15 2.4E-20 168.5 5.3 189 130-331 588-786 (885)
339 PLN03232 ABC transporter C fam 99.6 3.7E-16 8E-21 180.6 1.2 189 128-335 1257-1461(1495)
340 PTZ00265 multidrug resistance 99.6 4.2E-16 9.2E-21 179.0 1.5 191 126-332 1187-1452(1466)
341 KOG0055 Multidrug/pheromone ex 99.6 6.2E-16 1.3E-20 169.2 2.3 186 129-333 1012-1214(1228)
342 PRK11147 ABC transporter ATPas 99.6 7.4E-16 1.6E-20 164.8 2.4 176 126-324 338-519 (635)
343 COG4107 PhnK ABC-type phosphon 99.6 2.3E-15 5E-20 132.1 5.0 219 112-338 11-247 (258)
344 cd03291 ABCC_CFTR1 The CFTR su 99.6 3.2E-16 7E-21 151.4 -0.4 177 128-332 58-247 (282)
345 cd03236 ABC_RNaseL_inhibitor_d 99.6 6.4E-16 1.4E-20 147.3 1.5 174 130-318 23-214 (255)
346 TIGR00956 3a01205 Pleiotropic 99.6 9.6E-16 2.1E-20 175.8 2.8 193 122-327 778-988 (1394)
347 PRK10636 putative ABC transpor 99.6 1E-15 2.3E-20 163.5 2.7 180 126-328 331-513 (638)
348 PLN03130 ABC transporter C fam 99.6 6.3E-16 1.4E-20 179.1 1.1 190 126-334 1258-1463(1622)
349 TIGR02868 CydC thiol reductant 99.6 6.3E-16 1.4E-20 161.9 0.8 160 126-302 354-528 (529)
350 COG4167 SapF ABC-type antimicr 99.5 4.3E-15 9.3E-20 131.4 5.3 204 129-341 35-248 (267)
351 TIGR00956 3a01205 Pleiotropic 99.5 7.1E-16 1.5E-20 176.8 -0.2 196 123-330 77-298 (1394)
352 TIGR02857 CydD thiol reductant 99.5 1.1E-15 2.3E-20 160.3 0.9 170 128-315 343-528 (529)
353 PRK13409 putative ATPase RIL; 99.5 1.1E-15 2.4E-20 161.5 1.1 216 86-318 42-286 (590)
354 TIGR00957 MRP_assoc_pro multi 99.5 1.5E-15 3.2E-20 175.9 1.9 187 128-333 1307-1509(1522)
355 PRK10522 multidrug transporter 99.5 2.1E-15 4.6E-20 158.7 2.8 179 126-324 342-530 (547)
356 PLN03073 ABC transporter F fam 99.5 1.8E-15 4E-20 162.9 2.0 172 126-322 528-703 (718)
357 PLN03140 ABC transporter G fam 99.5 3.5E-15 7.7E-20 171.0 4.3 193 126-330 184-425 (1470)
358 COG4618 ArpD ABC-type protease 99.5 7.5E-16 1.6E-20 154.3 -1.1 186 128-331 357-559 (580)
359 TIGR01194 cyc_pep_trnsptr cycl 99.5 2.4E-15 5.1E-20 158.6 2.2 178 126-323 361-550 (555)
360 PTZ00265 multidrug resistance 99.5 2.8E-15 6E-20 172.3 2.9 180 126-319 404-655 (1466)
361 PRK10636 putative ABC transpor 99.5 3.6E-15 7.9E-20 159.4 3.1 196 116-323 10-226 (638)
362 PTZ00243 ABC transporter; Prov 99.5 2.6E-15 5.6E-20 173.7 2.0 192 124-334 1327-1535(1560)
363 KOG0061 Transporter, ABC super 99.5 7.5E-15 1.6E-19 155.7 5.2 200 118-330 41-258 (613)
364 COG1119 ModF ABC-type molybden 99.5 1.4E-15 3E-20 140.6 -0.4 196 120-325 44-255 (257)
365 PLN03140 ABC transporter G fam 99.5 2.9E-15 6.2E-20 171.8 1.3 194 121-327 894-1105(1470)
366 TIGR01271 CFTR_protein cystic 99.5 9E-15 1.9E-19 169.0 2.5 189 124-332 1236-1440(1490)
367 TIGR02322 phosphon_PhnN phosph 99.5 1.7E-12 3.6E-17 116.8 16.3 173 133-315 1-177 (179)
368 COG0488 Uup ATPase components 99.5 1.6E-14 3.5E-19 149.9 3.5 187 114-324 10-231 (530)
369 cd00267 ABC_ATPase ABC (ATP-bi 99.5 9.4E-15 2E-19 128.9 1.1 133 128-319 20-156 (157)
370 cd03238 ABC_UvrA The excision 99.5 1.8E-14 3.9E-19 129.7 2.7 149 128-321 16-166 (176)
371 KOG0056 Heavy metal exporter H 99.5 5.5E-15 1.2E-19 147.1 -1.5 188 128-334 559-763 (790)
372 TIGR00954 3a01203 Peroxysomal 99.5 1.6E-14 3.4E-19 155.0 1.8 171 122-317 467-652 (659)
373 PLN03232 ABC transporter C fam 99.4 2.5E-14 5.5E-19 165.4 3.0 180 126-332 636-828 (1495)
374 PRK11147 ABC transporter ATPas 99.4 2.3E-14 5E-19 153.3 2.2 193 117-323 13-233 (635)
375 TIGR00957 MRP_assoc_pro multi 99.4 3.1E-14 6.7E-19 165.0 1.4 180 128-332 659-850 (1522)
376 PLN03130 ABC transporter C fam 99.4 3.5E-14 7.5E-19 164.8 1.2 179 126-332 636-828 (1622)
377 TIGR01271 CFTR_protein cystic 99.4 3.9E-14 8.4E-19 163.7 0.8 179 126-332 445-636 (1490)
378 COG4778 PhnL ABC-type phosphon 99.4 6E-14 1.3E-18 122.9 1.8 178 128-317 32-226 (235)
379 COG4133 CcmA ABC-type transpor 99.4 8.7E-14 1.9E-18 123.8 2.8 158 118-280 13-175 (209)
380 cd03278 ABC_SMC_barmotin Barmo 99.4 2E-14 4.4E-19 131.8 -2.2 157 130-317 20-189 (197)
381 PTZ00243 ABC transporter; Prov 99.4 6.7E-14 1.5E-18 162.1 1.5 186 122-334 675-872 (1560)
382 COG0396 sufC Cysteine desulfur 99.4 9.4E-14 2E-18 127.2 1.6 188 126-328 23-230 (251)
383 COG5265 ATM1 ABC-type transpor 99.3 1E-13 2.2E-18 136.4 -0.5 191 126-334 282-488 (497)
384 PLN03073 ABC transporter F fam 99.3 2.3E-13 5E-18 146.8 0.7 73 240-323 349-421 (718)
385 COG0488 Uup ATPase components 99.3 7.3E-13 1.6E-17 137.6 3.2 175 120-318 335-511 (530)
386 COG3709 Uncharacterized compon 99.3 1.2E-10 2.5E-15 101.3 15.3 174 132-315 4-181 (192)
387 cd03270 ABC_UvrA_I The excisio 99.3 6.7E-13 1.4E-17 124.3 0.8 76 239-323 141-224 (226)
388 PF03193 DUF258: Protein of un 99.3 3.6E-11 7.9E-16 106.1 10.2 114 111-225 5-147 (161)
389 PRK08356 hypothetical protein; 99.2 6.4E-10 1.4E-14 101.7 15.4 176 132-315 4-191 (195)
390 KOG0065 Pleiotropic drug resis 99.2 3.2E-11 6.9E-16 132.9 7.9 186 130-328 814-1017(1391)
391 COG4138 BtuD ABC-type cobalami 99.2 4.2E-11 9E-16 105.6 6.4 192 129-340 21-229 (248)
392 cd03240 ABC_Rad50 The catalyti 99.2 1.7E-12 3.6E-17 119.8 -2.5 163 135-317 24-196 (204)
393 cd03271 ABC_UvrA_II The excisi 99.1 7.7E-12 1.7E-16 119.4 0.4 77 241-326 175-260 (261)
394 cd03279 ABC_sbcCD SbcCD and ot 99.1 1.7E-12 3.6E-17 120.4 -4.4 59 253-319 151-209 (213)
395 PF00005 ABC_tran: ABC transpo 99.1 1.1E-12 2.5E-17 112.4 -6.6 121 130-264 8-137 (137)
396 KOG0054 Multidrug resistance-a 99.1 2.1E-11 4.5E-16 136.8 1.2 189 129-336 1162-1366(1381)
397 cd03272 ABC_SMC3_euk Eukaryoti 99.1 4.5E-12 9.8E-17 119.6 -4.1 66 242-317 165-234 (243)
398 cd03273 ABC_SMC2_euk Eukaryoti 99.1 3.8E-12 8.2E-17 121.0 -5.0 173 131-317 23-242 (251)
399 KOG0054 Multidrug resistance-a 99.1 6E-11 1.3E-15 133.1 3.6 176 129-333 543-732 (1381)
400 COG4170 SapD ABC-type antimicr 99.1 9.2E-11 2E-15 106.2 3.9 205 129-340 29-256 (330)
401 cd03274 ABC_SMC4_euk Eukaryoti 99.0 1.2E-12 2.7E-17 121.3 -10.7 56 252-317 148-203 (212)
402 cd03283 ABC_MutS-like MutS-lik 99.0 1.4E-10 3.1E-15 106.5 2.7 128 131-307 23-152 (199)
403 KOG0927 Predicted transporter 99.0 2.6E-10 5.6E-15 115.6 3.3 167 131-321 414-584 (614)
404 KOG0927 Predicted transporter 98.9 2.2E-10 4.8E-15 116.1 1.5 72 243-324 229-300 (614)
405 KOG0062 ATPase component of AB 98.9 1.4E-10 3.1E-15 116.9 -0.2 66 240-316 203-268 (582)
406 cd03276 ABC_SMC6_euk Eukaryoti 98.9 1.8E-10 4E-15 105.7 -1.9 61 251-317 129-189 (198)
407 COG4615 PvdE ABC-type sideroph 98.9 4.6E-10 9.9E-15 110.1 0.7 174 130-324 346-529 (546)
408 cd03275 ABC_SMC1_euk Eukaryoti 98.8 1.1E-10 2.5E-15 110.7 -5.2 57 253-318 177-233 (247)
409 COG1129 MglA ABC-type sugar tr 98.8 9.5E-10 2.1E-14 112.4 0.1 183 130-326 282-484 (500)
410 KOG0066 eIF2-interacting prote 98.8 1.7E-09 3.7E-14 107.1 0.5 143 132-303 612-761 (807)
411 COG4178 ABC-type uncharacteriz 98.8 4.3E-09 9.4E-14 109.7 3.4 153 128-302 414-573 (604)
412 PRK00349 uvrA excinuclease ABC 98.7 1.2E-08 2.6E-13 112.7 4.3 87 240-335 835-930 (943)
413 COG1245 Predicted ATPase, RNas 98.7 2.7E-09 5.9E-14 106.4 -0.6 166 129-318 363-531 (591)
414 PRK00635 excinuclease ABC subu 98.7 6.9E-09 1.5E-13 119.7 1.6 84 240-332 814-906 (1809)
415 cd03280 ABC_MutS2 MutS2 homolo 98.6 2E-08 4.3E-13 92.2 3.5 63 252-323 107-170 (200)
416 cd03243 ABC_MutS_homologs The 98.6 6.7E-09 1.5E-13 95.5 0.2 63 251-322 106-169 (202)
417 PRK04040 adenylate kinase; Pro 98.6 2.4E-06 5.3E-11 77.8 16.0 75 239-314 106-187 (188)
418 KOG0060 Long-chain acyl-CoA tr 98.6 4.1E-08 9E-13 100.6 3.9 153 130-303 458-627 (659)
419 KOG0065 Pleiotropic drug resis 98.5 8.8E-08 1.9E-12 106.3 4.9 190 128-329 136-348 (1391)
420 PRK14731 coaE dephospho-CoA ki 98.5 4.8E-07 1E-11 83.7 8.8 64 249-315 137-201 (208)
421 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 6.1E-07 1.3E-11 77.6 8.8 70 85-158 33-108 (141)
422 KOG0062 ATPase component of AB 98.5 4.7E-08 1E-12 99.0 1.3 166 133-323 390-559 (582)
423 TIGR01360 aden_kin_iso1 adenyl 98.4 8.9E-07 1.9E-11 79.7 8.8 92 223-314 81-185 (188)
424 TIGR00630 uvra excinuclease AB 98.4 9.9E-08 2.2E-12 105.3 2.6 79 242-329 835-922 (924)
425 cd03227 ABC_Class2 ABC-type Cl 98.4 6.4E-08 1.4E-12 85.9 0.6 56 253-317 99-154 (162)
426 cd01849 YlqF_related_GTPase Yl 98.4 1.3E-06 2.8E-11 76.8 8.7 85 90-175 24-141 (155)
427 cd01858 NGP_1 NGP-1. Autoanti 98.4 6.8E-07 1.5E-11 78.6 6.8 87 85-173 30-141 (157)
428 KOG0064 Peroxisomal long-chain 98.4 2.2E-07 4.8E-12 94.3 4.0 150 128-303 503-669 (728)
429 KOG2355 Predicted ABC-type tra 98.4 3.9E-07 8.4E-12 82.8 4.6 177 128-323 35-228 (291)
430 KOG0708 Membrane-associated gu 98.3 4.4E-06 9.6E-11 81.8 11.9 170 131-322 185-354 (359)
431 cd03277 ABC_SMC5_euk Eukaryoti 98.3 1.2E-07 2.6E-12 88.1 0.6 57 250-312 145-201 (213)
432 COG3845 ABC-type uncharacteriz 98.3 4.9E-07 1.1E-11 91.5 4.8 185 130-328 281-488 (501)
433 PRK00081 coaE dephospho-CoA ki 98.3 2.4E-06 5.2E-11 78.1 8.2 58 254-314 133-191 (194)
434 cd00227 CPT Chloramphenicol (C 98.3 1E-05 2.3E-10 72.5 12.1 162 132-312 1-172 (175)
435 PRK00091 miaA tRNA delta(2)-is 98.3 5.4E-06 1.2E-10 81.1 10.4 90 132-231 3-100 (307)
436 PRK14530 adenylate kinase; Pro 98.3 3E-05 6.6E-10 71.9 14.9 67 249-315 138-212 (215)
437 PRK09825 idnK D-gluconate kina 98.2 2.9E-05 6.2E-10 70.0 14.1 28 132-159 2-29 (176)
438 cd03284 ABC_MutS1 MutS1 homolo 98.2 8.5E-07 1.8E-11 82.6 4.2 24 133-156 30-53 (216)
439 TIGR00235 udk uridine kinase. 98.1 2.2E-05 4.8E-10 72.3 11.4 29 131-159 4-32 (207)
440 COG1245 Predicted ATPase, RNas 98.1 4.9E-07 1.1E-11 90.6 0.1 33 130-162 97-129 (591)
441 PRK14527 adenylate kinase; Pro 98.1 0.00012 2.6E-09 66.5 15.9 66 249-314 115-190 (191)
442 PRK14526 adenylate kinase; Pro 98.1 0.00013 2.7E-09 67.7 15.9 54 263-316 152-209 (211)
443 cd03282 ABC_MSH4_euk MutS4 hom 98.1 4.8E-07 1E-11 83.5 -0.6 37 121-157 17-53 (204)
444 PRK14531 adenylate kinase; Pro 98.1 0.00022 4.8E-09 64.4 16.8 66 249-314 111-182 (183)
445 PRK14732 coaE dephospho-CoA ki 98.1 8.2E-06 1.8E-10 74.8 7.4 64 247-314 124-188 (196)
446 PLN02422 dephospho-CoA kinase 98.1 1.7E-05 3.7E-10 74.5 9.7 58 255-315 135-193 (232)
447 PRK00698 tmk thymidylate kinas 98.1 7.3E-05 1.6E-09 68.2 13.3 27 132-158 2-28 (205)
448 PTZ00451 dephospho-CoA kinase; 98.1 1.6E-05 3.5E-10 75.2 9.0 66 247-316 139-207 (244)
449 PRK06762 hypothetical protein; 98.1 0.00012 2.5E-09 64.9 14.0 25 133-157 2-26 (166)
450 PRK14730 coaE dephospho-CoA ki 98.1 1.6E-05 3.4E-10 72.9 8.5 63 248-314 129-192 (195)
451 PLN02674 adenylate kinase 98.1 0.00029 6.2E-09 66.7 17.0 53 262-314 187-243 (244)
452 PRK14733 coaE dephospho-CoA ki 98.0 1.9E-05 4E-10 72.9 8.7 58 255-315 138-197 (204)
453 KOG0066 eIF2-interacting prote 98.0 2.2E-06 4.8E-11 85.5 2.4 66 241-317 418-483 (807)
454 cd03281 ABC_MSH5_euk MutS5 hom 98.0 4.4E-06 9.6E-11 77.6 4.3 54 250-308 105-159 (213)
455 cd03239 ABC_SMC_head The struc 98.0 2.3E-07 5.1E-12 83.7 -4.5 57 252-317 115-171 (178)
456 COG2401 ABC-type ATPase fused 98.0 2E-05 4.4E-10 78.4 8.4 53 245-304 517-569 (593)
457 TIGR02858 spore_III_AA stage I 98.0 8.2E-07 1.8E-11 85.3 -1.6 29 134-162 112-140 (270)
458 cd01672 TMPK Thymidine monopho 98.0 0.00038 8.2E-09 62.7 15.8 31 134-165 1-31 (200)
459 cd01855 YqeH YqeH. YqeH is an 97.9 2.8E-05 6.1E-10 70.5 7.9 65 93-157 59-151 (190)
460 TIGR01359 UMP_CMP_kin_fam UMP- 97.9 0.00071 1.5E-08 60.6 16.7 61 254-314 112-182 (183)
461 PRK13808 adenylate kinase; Pro 97.9 0.00054 1.2E-08 67.6 17.1 62 255-316 116-193 (333)
462 PRK14528 adenylate kinase; Pro 97.9 0.00044 9.6E-09 62.7 15.4 59 254-312 116-184 (186)
463 cd00820 PEPCK_HprK Phosphoenol 97.9 6.2E-06 1.3E-10 68.0 2.7 25 130-154 12-36 (107)
464 TIGR01351 adk adenylate kinase 97.9 0.00062 1.3E-08 62.8 16.3 49 266-314 157-209 (210)
465 cd03241 ABC_RecN RecN ATPase i 97.9 1.2E-06 2.6E-11 84.5 -2.1 57 253-319 192-248 (276)
466 cd03285 ABC_MSH2_euk MutS2 hom 97.9 2.5E-06 5.5E-11 79.7 -0.5 63 251-323 107-172 (222)
467 PRK05480 uridine/cytidine kina 97.9 0.00019 4.1E-09 66.1 12.0 27 132-158 5-31 (209)
468 COG1102 Cmk Cytidylate kinase 97.9 0.00028 6E-09 62.0 12.0 156 135-315 2-171 (179)
469 PRK01184 hypothetical protein; 97.8 0.00035 7.5E-09 62.9 12.9 92 224-316 80-178 (184)
470 cd01859 MJ1464 MJ1464. This f 97.8 4.3E-05 9.2E-10 66.9 6.7 66 92-157 38-125 (156)
471 PLN02459 probable adenylate ki 97.8 0.00079 1.7E-08 64.2 15.7 57 262-318 193-253 (261)
472 PRK11545 gntK gluconate kinase 97.8 0.00025 5.4E-09 63.0 11.6 20 139-158 1-20 (163)
473 PRK14734 coaE dephospho-CoA ki 97.8 9.3E-05 2E-09 68.0 8.9 63 248-314 129-192 (200)
474 PRK03846 adenylylsulfate kinas 97.8 0.00018 4E-09 65.8 10.9 29 131-159 22-50 (198)
475 PRK02496 adk adenylate kinase; 97.8 0.00086 1.9E-08 60.4 15.0 66 249-314 111-182 (184)
476 PLN02200 adenylate kinase fami 97.8 0.0018 3.9E-08 61.1 17.5 61 256-316 156-224 (234)
477 cd03287 ABC_MSH3_euk MutS3 hom 97.8 2.3E-05 5E-10 73.2 4.5 37 129-165 27-64 (222)
478 PRK14532 adenylate kinase; Pro 97.8 0.0012 2.5E-08 59.7 15.5 60 255-314 116-185 (188)
479 KOG3220 Similar to bacterial d 97.8 0.00015 3.2E-09 65.8 9.3 88 224-317 107-195 (225)
480 cd04466 S1_YloQ_GTPase S1_YloQ 97.8 3.6E-05 7.8E-10 57.9 4.6 33 30-63 35-68 (68)
481 smart00534 MUTSac ATPase domai 97.8 1.2E-05 2.6E-10 72.9 2.3 52 252-311 77-129 (185)
482 TIGR01313 therm_gnt_kin carboh 97.8 0.00052 1.1E-08 60.5 12.5 23 136-158 1-23 (163)
483 PRK13796 GTPase YqeH; Provisio 97.8 7E-05 1.5E-09 75.2 7.7 95 95-190 96-221 (365)
484 cd01130 VirB11-like_ATPase Typ 97.7 4.9E-05 1.1E-09 68.9 6.0 35 131-166 23-57 (186)
485 PF13671 AAA_33: AAA domain; P 97.7 0.00012 2.7E-09 62.6 8.0 24 135-158 1-24 (143)
486 PRK00279 adk adenylate kinase; 97.7 0.0018 3.9E-08 59.9 16.2 50 266-315 160-213 (215)
487 PRK07721 fliI flagellum-specif 97.7 9.8E-05 2.1E-09 75.6 8.0 178 129-335 154-346 (438)
488 PTZ00132 GTP-binding nuclear p 97.7 2E-05 4.4E-10 72.8 2.6 34 249-282 166-204 (215)
489 PRK12338 hypothetical protein; 97.7 0.00042 9E-09 68.0 11.6 26 133-158 4-29 (319)
490 COG0563 Adk Adenylate kinase a 97.7 0.00052 1.1E-08 62.0 11.4 65 247-313 108-176 (178)
491 TIGR00152 dephospho-CoA kinase 97.7 0.00011 2.4E-09 66.6 7.0 59 249-311 128-187 (188)
492 PRK13974 thymidylate kinase; P 97.7 0.0019 4.2E-08 59.7 15.3 27 132-158 2-28 (212)
493 TIGR01526 nadR_NMN_Atrans nico 97.7 0.00018 3.8E-09 71.2 8.7 27 133-159 162-188 (325)
494 TIGR01069 mutS2 MutS2 family p 97.6 2.1E-05 4.5E-10 86.0 2.0 46 252-305 401-447 (771)
495 PRK05541 adenylylsulfate kinas 97.6 7.9E-05 1.7E-09 66.7 5.3 28 131-158 5-32 (176)
496 PRK13973 thymidylate kinase; P 97.6 0.0031 6.8E-08 58.4 16.1 34 132-166 2-35 (213)
497 PRK08233 hypothetical protein; 97.6 0.0021 4.5E-08 57.3 14.5 27 132-158 2-28 (182)
498 PRK00889 adenylylsulfate kinas 97.6 0.00046 1E-08 61.6 10.1 28 132-159 3-30 (175)
499 PLN02318 phosphoribulokinase/u 97.6 0.00064 1.4E-08 71.5 12.1 55 134-193 66-120 (656)
500 cd02022 DPCK Dephospho-coenzym 97.6 0.00014 3E-09 65.5 6.4 51 247-301 124-174 (179)
No 1
>PLN02772 guanylate kinase
Probab=100.00 E-value=3.4e-63 Score=487.66 Aligned_cols=393 Identities=76% Similarity=1.198 Sum_probs=362.3
Q ss_pred CCCCCceeeccccCCCCcCCcceecccCCCCCceeccEEEEEec-CCe---eEEEEeeeCCCceEEcccccCCCCCCCCC
Q 015825 1 MGEAPAFIVDNLQNGNGFSNGFSLKSRDCETTTVIGDKTYVIAG-SDE---SIGVKIYDRSTGNWLIPAVRGIEPRPCKG 76 (399)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~vGD~v~~~~~-~~~---~~i~~i~~r~~~~l~rp~~an~~~~~~p~ 76 (399)
|||||+|+||+++++ ++|||++|++...+.+++||++++..+ ++. ...+.|++...+.|.+|.|.+..|.++-+
T Consensus 1 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~G 78 (398)
T PLN02772 1 MGEAPAFFVDHLENG--YTNGFGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKG 78 (398)
T ss_pred CCCCCceeeechhhc--cccCccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCc
Confidence 999999999999988 999999999999999999999999863 233 35888999989999999999999999999
Q ss_pred CCccCccccchhhhhccCCCceEEEEeCCChHHHHHHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 77 HSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 77 ~~~~~l~~dr~L~~~~~~~~~~~i~~~k~D~~~~~~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++..++++||+||+.+....+.+|||.++|+++++++.+.+|.+|+.++....+..+++++|+||||||||||++.|...
T Consensus 79 hSa~v~~~~rilv~~~~~~~~~~~w~l~~~t~~~~~~~~~~~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~ 158 (398)
T PLN02772 79 YSAVVLNKDRILVIKKGSAPDDSIWFLEVDTPFVREQKKLLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKE 158 (398)
T ss_pred ceEEEECCceEEEEeCCCCCccceEEEEcCCHHHHhhcccccceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999888999999999987666667899999999999999999999998
Q ss_pred cCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCceEEecchhhH
Q 015825 157 FPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGA 236 (399)
Q Consensus 157 ~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~ 236 (399)
.+..++..++||||+++..+.++..|+|.+.+.|..++..+.|+|+..+.+++||++++.++..+++|+.+++++|+++.
T Consensus 159 ~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGa 238 (398)
T PLN02772 159 FPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGA 238 (398)
T ss_pred ccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHH
Confidence 87778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 237 RSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 237 ~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
+.++...+..+++|+.+|+++.|.+|+.+|+..+++++++||+.+..+++.....+.||++|+|+|+++|++.+..++.+
T Consensus 239 r~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~~Ei~~~~~~~~fD~vIvNDdLe~A~~~L~~iL~~ 318 (398)
T PLN02772 239 RSVRASSLEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKSSGIFDHILYNDNLEECYKNLKKLLGL 318 (398)
T ss_pred HHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccCCCCEEEECCCHHHHHHHHHHHHhh
Confidence 99998778889999999999999999999999999999999999877776544456799999999999999999999988
Q ss_pred cCCeeeecCCCccccCCCcchhhhcccCeEEEEecCCc-cccccceeeeecccccCCCCCcccceEEEEeeccCCCCCCC
Q 015825 317 DGSIATNHQTSPKGIDLPADHSVSKVANKVIIKCGAAE-GKASKNLMVLDVSSLKGGAPGRTRGLQVYTVDSFSDGLNGV 395 (399)
Q Consensus 317 ~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (399)
.+..........+.+++|..|.|.++++++.++ .+ .+..++++.+|+++|.+++||||||+.++++++|||++||+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (398)
T PLN02772 319 DGLAAVNGVEAPEGINLPKEHSVSKMDDKIIIQ---ETGEKTSNKLIVLDLSSLNGGAPGRTRGLDVDAVKSFSDFLNGI 395 (398)
T ss_pred cCccccccccccccccCCcccceeecCCceEec---ccccccccceEEEEehhccCCCCCcccceEEEeeechhhcccCc
Confidence 876655556667788999999999999999888 23 67888999999999999999999999999999999999999
Q ss_pred CCC
Q 015825 396 NKL 398 (399)
Q Consensus 396 ~~~ 398 (399)
||+
T Consensus 396 ~~~ 398 (398)
T PLN02772 396 NQS 398 (398)
T ss_pred CCC
Confidence 996
No 2
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.97 E-value=8.1e-31 Score=232.30 Aligned_cols=181 Identities=49% Similarity=0.737 Sum_probs=171.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g 211 (399)
+|.+++|.||||+|||||+++|.... ....++++|||++|+++.+|+.|+|.+.+.|..++..+.|+||..+.+++||
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 68999999999999999999999877 4566999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCC
Q 015825 212 TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSS 291 (399)
Q Consensus 212 ~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~ 291 (399)
++...++..+..|..+++|++.+|+++++...+..+++|+.+|+++.|.+|+.+|+.++.+.+.+||..+..++.++.
T Consensus 81 T~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~-- 158 (191)
T COG0194 81 TSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISHAD-- 158 (191)
T ss_pred CcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred CcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 292 GIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 292 ~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
.||.|++|+|++.|+..+..++...
T Consensus 159 -~fdyvivNdd~e~a~~~l~~ii~ae 183 (191)
T COG0194 159 -EFDYVIVNDDLEKALEELKSIILAE 183 (191)
T ss_pred -hCCEEEECccHHHHHHHHHHHHHHH
Confidence 5899999999999999998877654
No 3
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.97 E-value=9.8e-32 Score=255.81 Aligned_cols=193 Identities=24% Similarity=0.262 Sum_probs=156.3
Q ss_pred CCCCceeccEEEEEecCCeeEEEEeeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhhhccCCCceEEEE
Q 015825 29 CETTTVIGDKTYVIAGSDESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCLWF 102 (399)
Q Consensus 29 ~~~~~~vGD~v~~~~~~~~~~i~~i~~r~~~~l~rp~~an~~------~~~~p~~~~~~l~~dr~L~~~~~~~~~~~i~~ 102 (399)
.+..|+|||+|.|+.....|+|++|+|| ||.|.||++||+| ++.+|+||+.+| ||||+++|..+|+|+|++
T Consensus 41 ~~~~~vVGD~V~~~~~~~~g~I~~i~~R-kn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~l--dR~Lv~ae~~gi~pvIvl 117 (301)
T COG1162 41 KDLKPVVGDRVVFEDENNNGVIEKILPR-KNVLIRPPVANNDQAIIVVSLVDPDFNTNLL--DRYLVLAEAGGIEPVIVL 117 (301)
T ss_pred cCccccccCeEEEecCCCcceEEEEecc-cCceeCCcccccceEEEEEeccCCCCCHHHH--HHHHHHHHHcCCcEEEEE
Confidence 3788999999999975445999999999 9999999999988 888999999999 999999999999999999
Q ss_pred eCCCh---HHH-----HHHHHHhCCeEEEeccC-c-------cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee
Q 015825 103 LEVDT---PYV-----REQKKVVGAEVVAWSKG-V-------IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (399)
Q Consensus 103 ~k~D~---~~~-----~~l~~~~g~~v~~~s~~-~-------~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~ 166 (399)
||+|. +.. ....+.+||+++.+|.. . ..++|++++|+|+||+|||||+|.|.+.....+| +|+
T Consensus 118 nK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~-eIS 196 (301)
T COG1162 118 NKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLINALLPELNQKTG-EIS 196 (301)
T ss_pred EccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCCeEEEECCCCCcHHHHHHhhCchhhhhhh-hhc
Confidence 99993 111 12347899999999954 1 2369999999999999999999999998877777 665
Q ss_pred -------ecCCCccccccCCeeEEecCh-----HH--HHHHHhhhhhHHHHHHhccc-------cCCcHHHHHHHHHcCC
Q 015825 167 -------HTTRAPRAMEKDGVHYHFTER-----SV--MEKAIKDGKFLEFASVHGNL-------YGTSVEAVEAVADAGK 225 (399)
Q Consensus 167 -------~ttr~~~~~~~~~i~yvfq~~-----~l--f~~~~~~~~~~E~~~~~~~~-------~g~~~~~i~~~~~~g~ 225 (399)
|||++.+.....+.|++..+| ++ .........|.|+..+.+.| ...|.|.++++++.+.
T Consensus 197 ~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~~~~CkFr~C~H~~EPgCav~~av~~g~ 276 (301)
T COG1162 197 EKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAFPEFAELARQCKFRDCTHTHEPGCAVKAAVEEGE 276 (301)
T ss_pred ccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHHHhHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 899999888886567774443 22 11222334788888887665 4578899998888765
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=2e-32 Score=251.93 Aligned_cols=221 Identities=14% Similarity=0.172 Sum_probs=182.4
Q ss_pred HHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChH
Q 015825 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERS 188 (399)
Q Consensus 113 l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~ 188 (399)
+.+.++......+.+....+|++++|+|||||||||+++||.+++.|+.| .+...... .....++++||+.|...
T Consensus 7 vsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G-~I~i~g~~i~~~d~~~LRr~IGYviQqig 85 (309)
T COG1125 7 VSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSG-EILIDGEDISDLDPVELRRKIGYVIQQIG 85 (309)
T ss_pred eehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCc-eEEECCeecccCCHHHHHHhhhhhhhhcc
Confidence 44556655555555566779999999999999999999999999999999 55542211 11223456999999999
Q ss_pred HHHHHHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHH--------HHcCCcceeEEEEcCCChHHHH
Q 015825 189 VMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARS--------VRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 189 lf~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~--------l~~~~~~~~~ili~~P~lllLD 260 (399)
+||++ ++.||+.+...+.+.+++.+++.+.+ +..+++++|..+.. .++|+...+.+++.+|++++||
T Consensus 86 LFPh~----Tv~eNIa~VP~L~~w~k~~i~~r~~E-Ll~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD 160 (309)
T COG1125 86 LFPHL----TVAENIATVPKLLGWDKERIKKRADE-LLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD 160 (309)
T ss_pred cCCCc----cHHHHHHhhhhhcCCCHHHHHHHHHH-HHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec
Confidence 99999 99999999999999999888877655 33345566543222 2456667777999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
||++++||.++.++|+.+.++++++.. |+|+||||++||++..++++.+.+|.++|.++|.+++.+|++++|+
T Consensus 161 EPFgALDpI~R~~lQ~e~~~lq~~l~k-------TivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~ 233 (309)
T COG1125 161 EPFGALDPITRKQLQEEIKELQKELGK-------TIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVE 233 (309)
T ss_pred CCccccChhhHHHHHHHHHHHHHHhCC-------EEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHH
Confidence 999999999999999999999988765 9999999999999999999999999999999999999999999999
Q ss_pred cccCeE
Q 015825 341 KVANKV 346 (399)
Q Consensus 341 ~~~~~~ 346 (399)
.+.+.-
T Consensus 234 ~f~g~~ 239 (309)
T COG1125 234 DFFGES 239 (309)
T ss_pred HHhccc
Confidence 876543
No 5
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=2.7e-31 Score=259.86 Aligned_cols=225 Identities=16% Similarity=0.123 Sum_probs=175.9
Q ss_pred HHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHH
Q 015825 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 113 l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf 190 (399)
+.+.+|......+.+....+|++++|+|||||||||++++|+|+..|..| .|....+.. -+.+.+++++|||++.+|
T Consensus 11 v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G-~I~l~G~~i~~lpp~kR~ig~VFQ~YALF 89 (352)
T COG3842 11 VSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG-EILLDGEDITDVPPEKRPIGMVFQSYALF 89 (352)
T ss_pred eeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhhcccceeecCcccC
Confidence 44667744444445566779999999999999999999999999999999 555322111 223345699999999999
Q ss_pred HHHHhhhhhHHHHHHhccccC-CcHHHHHHHHHcCCceE-----EecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYG-TSVEAVEAVADAGKRCI-----LDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g-~~~~~i~~~~~~g~~~v-----ldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
|+| ++.+|+.|.....+ .+.+++.+.+.+.+..+ .+--|..+...++|++..+.+|+..|.+++||||++
T Consensus 90 PHl----tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlS 165 (352)
T COG3842 90 PHM----TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLS 165 (352)
T ss_pred CCC----cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCccc
Confidence 999 99999999877544 34454555554432221 111222223335667777889999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
++|..-+++++..+++++++++ .|+|+||||.+||+...+++++|++|.+.|.++|.++|..|.+.+|+.+.+
T Consensus 166 aLD~kLR~~mr~Elk~lq~~~g-------iT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG 238 (352)
T COG3842 166 ALDAKLREQMRKELKELQRELG-------ITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFIG 238 (352)
T ss_pred chhHHHHHHHHHHHHHHHHhcC-------CeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHHHHHhC
Confidence 9999999999999999887753 499999999999999999999999999999999999999999999999877
Q ss_pred eEEEE
Q 015825 345 KVIIK 349 (399)
Q Consensus 345 ~~~~~ 349 (399)
...+-
T Consensus 239 ~~N~l 243 (352)
T COG3842 239 ESNIF 243 (352)
T ss_pred cceee
Confidence 65543
No 6
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.8e-31 Score=258.41 Aligned_cols=225 Identities=16% Similarity=0.136 Sum_probs=180.9
Q ss_pred HHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHH
Q 015825 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVME 191 (399)
Q Consensus 114 ~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~ 191 (399)
.+.+|...+..+.+.....|++++|+||||||||||+|+|+|+..+..| .+....+... ..+.+++++|||++.+||
T Consensus 10 ~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G-~I~i~g~~vt~l~P~~R~iamVFQ~yALyP 88 (338)
T COG3839 10 RKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSG-EILIDGRDVTDLPPEKRGIAMVFQNYALYP 88 (338)
T ss_pred EEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhHCCEEEEeCCccccC
Confidence 3455543223334455679999999999999999999999999999999 6654222111 222356999999999999
Q ss_pred HHHhhhhhHHHHHHhccccCCcHHHHHHHHHcC-----CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 192 KAIKDGKFLEFASVHGNLYGTSVEAVEAVADAG-----KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g-----~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
+| ++.+|+.|..+..+.+++++.+.+++. ...+++--|..+...++|+.....+++..|++.+||||++++
T Consensus 89 hm----tV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnL 164 (338)
T COG3839 89 HM----TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNL 164 (338)
T ss_pred CC----cHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHh
Confidence 99 999999999999988888877766542 222333334444445677788888999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccCeE
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANKV 346 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~ 346 (399)
|...+.+++..++++++++.. |.|++|||..||+...++++++.+|.+.|.++|.+++..|.+.+|+.+.+..
T Consensus 165 Da~lR~~mr~ei~~lh~~l~~-------T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~fVA~FiG~p 237 (338)
T COG3839 165 DAKLRVLMRSEIKKLHERLGT-------TTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFIGSP 237 (338)
T ss_pred hHHHHHHHHHHHHHHHHhcCC-------cEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchhhhhhcCCh
Confidence 999999999999998887643 9999999999999999999999999999999999999999999999987755
Q ss_pred EEEe
Q 015825 347 IIKC 350 (399)
Q Consensus 347 ~~~~ 350 (399)
.++.
T Consensus 238 ~mn~ 241 (338)
T COG3839 238 PMNF 241 (338)
T ss_pred hhcC
Confidence 4443
No 7
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.8e-28 Score=231.84 Aligned_cols=219 Identities=15% Similarity=0.127 Sum_probs=176.6
Q ss_pred HHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC--------ccccccCCeeEEe
Q 015825 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA--------PRAMEKDGVHYHF 184 (399)
Q Consensus 113 l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~--------~~~~~~~~i~yvf 184 (399)
+.+..|.-+=..+.+.....|++++|+|-||||||||+++|.++.+|+.| .+....+. .+...++.++++|
T Consensus 34 i~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G-~ilv~g~di~~~~~~~Lr~~Rr~~~sMVF 112 (386)
T COG4175 34 ILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG-EILVDGKDIAKLSAAELRELRRKKISMVF 112 (386)
T ss_pred HHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc-eEEECCcchhcCCHHHHHHHHhhhhhhhh
Confidence 34667765555556677789999999999999999999999999999999 55432221 1233445689999
Q ss_pred cChHHHHHHHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCceE-----EecchhhHHHHHcCCcceeEEEEcCCChHHH
Q 015825 185 TERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCI-----LDIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 185 q~~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~v-----ldld~~g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
|++.++|+. ++++|..|.....|.++++.++...+++..+ -+--|..+....+|++..+.+|+.+|++++|
T Consensus 113 Q~FaLlPhr----tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLM 188 (386)
T COG4175 113 QSFALLPHR----TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLM 188 (386)
T ss_pred hhhccccch----hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEe
Confidence 999999999 9999999999999999888777665543222 0001111111234555666799999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
||+++++||.-+.++|..|.++++++.. |+|+++||++||+..-++|..|.+|.++|.|+|++++..|++..|
T Consensus 189 DEaFSALDPLIR~~mQdeLl~Lq~~l~K-------TIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV 261 (386)
T COG4175 189 DEAFSALDPLIRTEMQDELLELQAKLKK-------TIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYV 261 (386)
T ss_pred cCchhhcChHHHHHHHHHHHHHHHHhCC-------eEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHH
Confidence 9999999999999999999999988765 999999999999999999999999999999999999999999988
Q ss_pred hccc
Q 015825 340 SKVA 343 (399)
Q Consensus 340 ~~~~ 343 (399)
..|.
T Consensus 262 ~~Fv 265 (386)
T COG4175 262 RDFV 265 (386)
T ss_pred HHHH
Confidence 8754
No 8
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.95 E-value=8.8e-27 Score=211.64 Aligned_cols=181 Identities=41% Similarity=0.636 Sum_probs=163.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g 211 (399)
++++++|+||||||||||++.|....+.. ...++||||+++..+.+|.+|+|.+.+.|..++..+.|+||..|.+++||
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDF-LFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCcc-ccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 57899999999999999999999877554 44789999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHcCCceEEecchhhHHHHHcCCcce-eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 212 TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDA-IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 212 ~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~-~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
++.+.+...++.|+.+++++++++++.++...+.. +.+|+.+|+.+.+.+|+..|+..+++++++++.....+...
T Consensus 82 t~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~--- 158 (186)
T PRK14737 82 TPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELDE--- 158 (186)
T ss_pred CcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh---
Confidence 99999999999999999999999999999877766 78999999999999999999988999999999986554433
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.+.||++|+|+++++++.++.+++..
T Consensus 159 ~~~~D~vI~N~dle~a~~ql~~ii~~ 184 (186)
T PRK14737 159 ANEFDYKIINDDLEDAIADLEAIICG 184 (186)
T ss_pred hccCCEEEECcCHHHHHHHHHHHHhc
Confidence 46789999999999999999887653
No 9
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.7e-28 Score=227.20 Aligned_cols=192 Identities=19% Similarity=0.146 Sum_probs=150.9
Q ss_pred HhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHh
Q 015825 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 116 ~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
.++...+.-+.+....+|++++|+||||||||||+|+|+|+..|..| .+....++. ......++|+||++.+|||+
T Consensus 12 ~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G-~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~-- 87 (248)
T COG1116 12 SFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG-EVLLDGRPV-TGPGPDIGYVFQEDALLPWL-- 87 (248)
T ss_pred EeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCccc-CCCCCCEEEEeccCcccchh--
Confidence 34443444444456679999999999999999999999999999999 666655554 33345689999999999999
Q ss_pred hhhhHHHHHHhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 196 DGKFLEFASVHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
++.+|+.+.....+.+..+.++.+.+ |+.-+.+..|..+....+|+...+.+++.+|++++||||++++|..|
T Consensus 88 --Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalT 165 (248)
T COG1116 88 --TVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165 (248)
T ss_pred --hHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHH
Confidence 99999998877766555444333332 33333334444445556777788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
++.+++.+.++.++. .+|+++||||++||+...++++.++.++
T Consensus 166 R~~lq~~l~~lw~~~-------~~TvllVTHdi~EAv~LsdRivvl~~~P 208 (248)
T COG1116 166 REELQDELLRLWEET-------RKTVLLVTHDVDEAVYLADRVVVLSNRP 208 (248)
T ss_pred HHHHHHHHHHHHHhh-------CCEEEEEeCCHHHHHhhhCEEEEecCCC
Confidence 999999999988764 3499999999999999999999999864
No 10
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.3e-28 Score=230.59 Aligned_cols=209 Identities=15% Similarity=0.143 Sum_probs=161.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecC---CCc-cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT---RAP-RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~tt---r~~-~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
.....|+.++|+||||||||||+++|+|+..|..|....+.. ... .....+++||+||++.+|++| ++.+|+
T Consensus 23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~Hm----tVa~NI 98 (345)
T COG1118 23 LDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHM----TVADNI 98 (345)
T ss_pred eeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccc----hHHhhh
Confidence 445689999999999999999999999999999994433211 111 122234699999999999999 999999
Q ss_pred HHhccccCC--cHHHHHHHHHcCCce-----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHH
Q 015825 204 SVHGNLYGT--SVEAVEAVADAGKRC-----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (399)
Q Consensus 204 ~~~~~~~g~--~~~~i~~~~~~g~~~-----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~ 276 (399)
.|...+... +...++..+++.+.+ +-+--|..+...++|+...+.+++.+|++++||||+.++|..-+.++++
T Consensus 99 AFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~ 178 (345)
T COG1118 99 AFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 178 (345)
T ss_pred hhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHH
Confidence 998765421 123333333332111 1111233333345667777789999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccCeEE
Q 015825 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANKVI 347 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~ 347 (399)
+|+++.+++ .++.|++|||++||++.+++++.+++|.+++.++|.++++.|...+|..+.+...
T Consensus 179 wLr~~~~~~-------~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~fV~~f~G~~n 242 (345)
T COG1118 179 WLRKLHDRL-------GVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVARFLGEVN 242 (345)
T ss_pred HHHHHHHhh-------CceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCccceecccccce
Confidence 999988765 3489999999999999999999999999999999999999999999988766543
No 11
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=7.4e-29 Score=223.93 Aligned_cols=218 Identities=17% Similarity=0.102 Sum_probs=170.9
Q ss_pred HHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-----ccccccCCeeEEecCh
Q 015825 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTER 187 (399)
Q Consensus 113 l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~~i~yvfq~~ 187 (399)
+.|.+|...+..+.+....+|++++|+||||||||||+++|.++..+..| .|...... .....+..+|+|||++
T Consensus 8 l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G-~I~i~g~~~~~~~~~~~~R~~vGmVFQ~f 86 (240)
T COG1126 8 LSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG-SITVDGEDVGDKKDILKLRRKVGMVFQQF 86 (240)
T ss_pred eeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCc-eEEECCEeccchhhHHHHHHhcCeecccc
Confidence 44667766666666667789999999999999999999999999999999 55532211 1122234689999999
Q ss_pred HHHHHHHhhhhhHHHHHHhcc-ccCCcHHHHHHHHHcC-----CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 188 SVMEKAIKDGKFLEFASVHGN-LYGTSVEAVEAVADAG-----KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 188 ~lf~~~~~~~~~~E~~~~~~~-~~g~~~~~i~~~~~~g-----~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
.+||++ +++||+.+... ..+.+++++++...+. +..-.+.-|..+...++|+...+.+|+.+|++.++||
T Consensus 87 nLFPHl----TvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE 162 (240)
T COG1126 87 NLFPHL----TVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE 162 (240)
T ss_pred cccccc----hHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC
Confidence 999999 99999987654 3677777766554332 1111222333344456777778889999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
||++|||+...++.+.++.+.++ ..|.++|||++.-|.+.+++++-+.+|.++..++|.+++..|..+...+
T Consensus 163 PTSALDPElv~EVL~vm~~LA~e--------GmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~R~~~ 234 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAEE--------GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTRQ 234 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHc--------CCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCHHHHH
Confidence 99999999999999998887653 3499999999999999999999999999998899999999998877666
Q ss_pred cc
Q 015825 342 VA 343 (399)
Q Consensus 342 ~~ 343 (399)
+-
T Consensus 235 FL 236 (240)
T COG1126 235 FL 236 (240)
T ss_pred HH
Confidence 53
No 12
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.93 E-value=3.4e-25 Score=200.68 Aligned_cols=181 Identities=46% Similarity=0.806 Sum_probs=164.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g 211 (399)
++++++|+||||||||||++.|+..++..++..++||||+++..+.+|..|+|.+.+.|..+...+.|+|+..+.++.||
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence 47899999999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCC
Q 015825 212 TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSS 291 (399)
Q Consensus 212 ~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~ 291 (399)
++...+...+..++.++++++++++..++.....++++|+.+|+...+.+++..++.++.+.+.+++..+..++..+.
T Consensus 81 t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~~-- 158 (183)
T PF00625_consen 81 TSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKEFEHYN-- 158 (183)
T ss_dssp EEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHGGGG--
T ss_pred hccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHHHhHhh--
Confidence 999999999999999999999999999999999999999999999999999999998888899999999887776642
Q ss_pred CcceEEEeCCCHHHHHHHHHHhhc
Q 015825 292 GIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 292 ~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
.||.+++|+++++++..+.+++.
T Consensus 159 -~fd~vi~n~~le~~~~~l~~ii~ 181 (183)
T PF00625_consen 159 -EFDYVIVNDDLEEAVKELKEIIE 181 (183)
T ss_dssp -GSSEEEECSSHHHHHHHHHHHHH
T ss_pred -cCCEEEECcCHHHHHHHHHHHHH
Confidence 28999999999999999998764
No 13
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.92 E-value=3.4e-24 Score=194.41 Aligned_cols=181 Identities=52% Similarity=0.867 Sum_probs=166.4
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~ 212 (399)
+++++|+|||||||+|+++.|....+..++..++||||+++..+..|..|+|.+.+.|..++..+.|+|+..+.++.||+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 68999999999999999999999887667888999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCC
Q 015825 213 SVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSG 292 (399)
Q Consensus 213 ~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~ 292 (399)
+...+...+..++.+++|++++++..++...+.++++|+.+|+.+.|.+|+..|+.++.+.+.+++..+..++.. .+
T Consensus 82 ~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~---~~ 158 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQE---YH 158 (184)
T ss_pred CHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh---hc
Confidence 999999999999999999999999999988888899999999999999999999888999999999987766544 25
Q ss_pred cceEEEeCCCHHHHHHHHHHhhcc
Q 015825 293 IFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 293 ~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.||.+|+|+++++++..+.+++..
T Consensus 159 ~fd~~I~n~~l~~~~~~l~~~i~~ 182 (184)
T smart00072 159 LFDYVIVNDDLEDAYEELKEILEA 182 (184)
T ss_pred cCCEEEECcCHHHHHHHHHHHHHh
Confidence 789999999999999999887753
No 14
>PRK12288 GTPase RsgA; Reviewed
Probab=99.92 E-value=5.4e-25 Score=217.58 Aligned_cols=199 Identities=24% Similarity=0.241 Sum_probs=150.4
Q ss_pred eecccCCCCCceeccEEEEEecC-C----eeEEEEeeeCCCceEEccc--------ccCCC-----CCCCCCCCccCccc
Q 015825 23 SLKSRDCETTTVIGDKTYVIAGS-D----ESIGVKIYDRSTGNWLIPA--------VRGIE-----PRPCKGHSAVLLNE 84 (399)
Q Consensus 23 ~~k~~~~~~~~~vGD~v~~~~~~-~----~~~i~~i~~r~~~~l~rp~--------~an~~-----~~~~p~~~~~~l~~ 84 (399)
..+.+++...|+|||||.|+..+ + .|+|++|+|| +|.|.||. |||+| .+..|.+++.+|
T Consensus 63 ~~~~~g~~~~~~vGD~V~~~~~~~~~~~~~~~I~~il~R-~n~L~R~~~~~~~q~iaANvD~vlIV~s~~p~~s~~~L-- 139 (347)
T PRK12288 63 RCNIRRTIRSLVTGDRVVWRPGKEALEGVSGVVEAVHPR-TSVLTRPDYYDGVKPIAANIDQIVIVSAVLPELSLNII-- 139 (347)
T ss_pred EEEecccCCCCCCCcEEEEEeCCCcccccceEEEEEecc-cceEECCCcccccceEEEEccEEEEEEeCCCCCCHHHH--
Confidence 45555554569999999998633 2 3899999999 89999998 69999 446799999999
Q ss_pred cchhhhhccCCCceEEEEeCCCh---HH---HHHH---HHHhCCeEEEeccC-cc-------CCCCcEEEEEcCCCCCHH
Q 015825 85 DRILVIKKGSSSDDCLWFLEVDT---PY---VREQ---KKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGVGKG 147 (399)
Q Consensus 85 dr~L~~~~~~~~~~~i~~~k~D~---~~---~~~l---~~~~g~~v~~~s~~-~~-------~~~g~~~~l~GpsG~GKS 147 (399)
||||++++..+++++|++||+|. +. ...+ .+.+||+++.+|+. .. .+.+++++|+|+||+|||
T Consensus 140 dr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~~~L~~ki~~~vG~sgVGKS 219 (347)
T PRK12288 140 DRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEELEAALTGRISIFVGQSGVGKS 219 (347)
T ss_pred HHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHHHHHhhCCEEEECCCCCCHH
Confidence 99999999999999999999993 11 2221 24679999998875 22 246889999999999999
Q ss_pred HHHhhhhhccCCcccceee-------ecCCCccccccCCeeEEecChH-----HH--HHHHhhhhhHHHHHHhccc----
Q 015825 148 TLISMLMKEFPSMFGFSVS-------HTTRAPRAMEKDGVHYHFTERS-----VM--EKAIKDGKFLEFASVHGNL---- 209 (399)
Q Consensus 148 Tl~~~L~~~~~~~~g~~i~-------~ttr~~~~~~~~~i~yvfq~~~-----lf--~~~~~~~~~~E~~~~~~~~---- 209 (399)
||+|.|.+.....+| .++ |||+..+.....+.+++..+|. ++ ........|.|+..+...|
T Consensus 220 TLiN~Ll~~~~~~t~-~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~ei~~~~~~CrF~d 298 (347)
T PRK12288 220 SLINALLPEAEILVG-DVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFVEFRDYLGTCKFRD 298 (347)
T ss_pred HHHHHhccccceeec-cccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccCCCCCHHHHHHhhHHHHHHhcCCCCCC
Confidence 999999998777777 554 7888877666554456644432 22 1112234788887777665
Q ss_pred ---cCCcHHHHHHHHHcCC
Q 015825 210 ---YGTSVEAVEAVADAGK 225 (399)
Q Consensus 210 ---~g~~~~~i~~~~~~g~ 225 (399)
...|.|.+.+++++|.
T Consensus 299 C~H~~EpgCaV~~Av~~g~ 317 (347)
T PRK12288 299 CKHDDDPGCALREAVEEGK 317 (347)
T ss_pred CccCCCCCChHHHHHHcCC
Confidence 4577899999888876
No 15
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.1e-25 Score=212.96 Aligned_cols=205 Identities=15% Similarity=0.092 Sum_probs=165.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec------CCCccccccCCeeEEecChHHHHHHHhhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT------TRAPRAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t------tr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
.+....+|++++++|.||||||||++++.++..|..|...... +....+..++.+|++||++.++..+ ++
T Consensus 25 vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr----TV 100 (339)
T COG1135 25 VSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR----TV 100 (339)
T ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc----hH
Confidence 4456679999999999999999999999999999999433321 1112223345699999999887655 99
Q ss_pred HHHHHHhccccCCcHHHHHHHHHcCCceE-----EecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 200 LEFASVHGNLYGTSVEAVEAVADAGKRCI-----LDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~i~~~~~~g~~~v-----ldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
.+|+.|...+.+.++.++++++.+.+..+ .+-.|..+...++|++..+.+++++|++++.||+++++||.+.+.+
T Consensus 101 ~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sI 180 (339)
T COG1135 101 FENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSI 180 (339)
T ss_pred HhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHH
Confidence 99999999999999998888776533221 1122333333467777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
.+.|+.+.++++. |+|++||.++-+...|+++.++..|.++..++..+++..|......+
T Consensus 181 L~LL~~In~~lgl-------TIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~~ 240 (339)
T COG1135 181 LELLKDINRELGL-------TIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQE 240 (339)
T ss_pred HHHHHHHHHHcCC-------EEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchHHHHH
Confidence 9999999988744 99999999999999999999999999999999999999996554333
No 16
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.91 E-value=2.7e-24 Score=208.14 Aligned_cols=191 Identities=25% Similarity=0.241 Sum_probs=144.9
Q ss_pred CCceeccEEEEEe-cCCeeEEEEeeeCCCceEEccc--------ccCCC------CCCCCCCCccCccccchhhhhccCC
Q 015825 31 TTTVIGDKTYVIA-GSDESIGVKIYDRSTGNWLIPA--------VRGIE------PRPCKGHSAVLLNEDRILVIKKGSS 95 (399)
Q Consensus 31 ~~~~vGD~v~~~~-~~~~~~i~~i~~r~~~~l~rp~--------~an~~------~~~~p~~~~~~l~~dr~L~~~~~~~ 95 (399)
..|+|||||.++. ++++|+|++|+|| +|.|+||+ ++|+| ++.+|.+++..+ ||+|+.++..+
T Consensus 33 ~~~~vGD~V~~~~~~~~~~~i~~i~~R-~~~l~R~~~~~~~~~i~anvD~vllV~d~~~p~~s~~~l--dr~L~~~~~~~ 109 (287)
T cd01854 33 IKPVVGDWVEVEPDDDGEGVIVRVLPR-KNLLSRPAAGGREQVIAANVDQLVIVVSLNEPFFNPRLL--DRYLVAAEAAG 109 (287)
T ss_pred CCccCCCEEEEEecCCCcEEEEEEECC-CceEEccCCCCcceeEEEeCCEEEEEEEcCCCCCCHHHH--HHHHHHHHHcC
Confidence 4699999999986 4457999999999 99999999 99999 566677888999 99999999999
Q ss_pred CceEEEEeCCCh--H-HH---HHHHHHhCCeEEEeccC-cc-------CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcc
Q 015825 96 SDDCLWFLEVDT--P-YV---REQKKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGVGKGTLISMLMKEFPSMF 161 (399)
Q Consensus 96 ~~~~i~~~k~D~--~-~~---~~l~~~~g~~v~~~s~~-~~-------~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~ 161 (399)
++++|++||+|. + .. .......||+++.+|+. .. .+.+++++|+|+||+|||||+|.|.+...+..
T Consensus 110 ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~~k~~~~~G~sg~GKSTlin~l~~~~~~~~ 189 (287)
T cd01854 110 IEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELREYLKGKTSVLVGQSGVGKSTLINALLPDLDLAT 189 (287)
T ss_pred CCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHHhhhccceEEEECCCCCCHHHHHHHHhchhhccc
Confidence 999999999993 2 11 11235679999998876 22 35789999999999999999999999988777
Q ss_pred cceee-------ecCCCccccccCCeeEEecChHH---H-HH---HHhhhhhHHHHHHhccc-------cCCcHHHHHHH
Q 015825 162 GFSVS-------HTTRAPRAMEKDGVHYHFTERSV---M-EK---AIKDGKFLEFASVHGNL-------YGTSVEAVEAV 220 (399)
Q Consensus 162 g~~i~-------~ttr~~~~~~~~~i~yvfq~~~l---f-~~---~~~~~~~~E~~~~~~~~-------~g~~~~~i~~~ 220 (399)
| .++ |||+........+.+++..++.+ . .. ......|.++..+...| ...|.|.++++
T Consensus 190 g-~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~f~~~~~~~~~C~F~~C~H~~Ep~Cav~~a 268 (287)
T cd01854 190 G-EISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEELAHYFPEFRELAGQCKFRDCTHTNEPGCAVKAA 268 (287)
T ss_pred c-ceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHHHHHHHhHHHHHHhCCCCCCCCcCCCCCCCHHHHH
Confidence 7 443 57776655555545678776654 1 11 11222455555555544 44778999999
Q ss_pred HHcCC
Q 015825 221 ADAGK 225 (399)
Q Consensus 221 ~~~g~ 225 (399)
+++|.
T Consensus 269 v~~g~ 273 (287)
T cd01854 269 VEAGE 273 (287)
T ss_pred HHcCC
Confidence 88876
No 17
>PRK00098 GTPase RsgA; Reviewed
Probab=99.91 E-value=6.2e-24 Score=206.71 Aligned_cols=201 Identities=24% Similarity=0.317 Sum_probs=151.5
Q ss_pred cceecccCC----CCCceeccEEEEEe-cCCeeEEEEeeeCCCceEEcccc-------cCCC------CCCCCCCCccCc
Q 015825 21 GFSLKSRDC----ETTTVIGDKTYVIA-GSDESIGVKIYDRSTGNWLIPAV-------RGIE------PRPCKGHSAVLL 82 (399)
Q Consensus 21 ~~~~k~~~~----~~~~~vGD~v~~~~-~~~~~~i~~i~~r~~~~l~rp~~-------an~~------~~~~p~~~~~~l 82 (399)
.+..+.+++ +..|+|||||.+.. .++.|+|++|+|| +|.++||.+ +|+| ++.+|.++..++
T Consensus 22 ~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~g~i~~i~~R-~~~l~R~~~~~~q~iaaniD~vllV~d~~~p~~~~~~i 100 (298)
T PRK00098 22 VYQCRARGKFRKKTNTPAVGDRVEFSAENNDEGVILEIHER-KNLLVRPPIFKSKLIAANVDQAVLVFAAKEPDFSTDLL 100 (298)
T ss_pred EEEEEeccccccCCCCcCCCCEEEEEECCCCcEEEEEEeCC-CceEECCCCccccceeecCCEEEEEEECCCCCCCHHHH
Confidence 355554443 34599999999986 4457999999999 899999998 9999 566788888889
Q ss_pred cccchhhhhccCCCceEEEEeCCCh----HHHH---HHHHHhCCeEEEeccC-cc-------CCCCcEEEEEcCCCCCHH
Q 015825 83 NEDRILVIKKGSSSDDCLWFLEVDT----PYVR---EQKKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGVGKG 147 (399)
Q Consensus 83 ~~dr~L~~~~~~~~~~~i~~~k~D~----~~~~---~l~~~~g~~v~~~s~~-~~-------~~~g~~~~l~GpsG~GKS 147 (399)
+|+|+.++..+++++|++||+|. +... ...+.+|++++.+|+. .. .+.|++++|+|+||+|||
T Consensus 101 --dr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l~gk~~~~~G~sgvGKS 178 (298)
T PRK00098 101 --DRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDELKPLLAGKVTVLAGQSGVGKS 178 (298)
T ss_pred --HHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHhhccCceEEEECCCCCCHH
Confidence 99999999999999999999993 1121 2235679999998866 22 358999999999999999
Q ss_pred HHHhhhhhccCCcccceee-------ecCCCccccccCCeeEEecChHHH-------HHHHhhhhhHHHHHHhcc-----
Q 015825 148 TLISMLMKEFPSMFGFSVS-------HTTRAPRAMEKDGVHYHFTERSVM-------EKAIKDGKFLEFASVHGN----- 208 (399)
Q Consensus 148 Tl~~~L~~~~~~~~g~~i~-------~ttr~~~~~~~~~i~yvfq~~~lf-------~~~~~~~~~~E~~~~~~~----- 208 (399)
||+|+|.+.....+| .++ |||+..+.....+.+|+..++.+. ........|.++..+.+.
T Consensus 179 tlin~l~~~~~~~~g-~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~f~~~~~~~~~c~f~~ 257 (298)
T PRK00098 179 TLLNALAPDLELKTG-EISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHYFPEFRPLSGDCKFRN 257 (298)
T ss_pred HHHHHHhCCcCCCCc-ceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999888777 554 688877776665556775554332 111112245565555553
Q ss_pred --ccCCcHHHHHHHHHcCC
Q 015825 209 --LYGTSVEAVEAVADAGK 225 (399)
Q Consensus 209 --~~g~~~~~i~~~~~~g~ 225 (399)
+++++.|.++++++.|.
T Consensus 258 c~h~~ep~c~v~~a~~~g~ 276 (298)
T PRK00098 258 CTHLHEPGCAVKAAVEEGE 276 (298)
T ss_pred CcCCCCCCChHHHHHHcCC
Confidence 47889999999998876
No 18
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.7e-25 Score=222.04 Aligned_cols=208 Identities=12% Similarity=0.133 Sum_probs=160.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
.+....+|++++|+||||||||||+++|+|+.++..| .+....+.. .....++++|+||++.+|+++ ++.+++
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~----tv~eNi 99 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG-QIFIDGEDVTHRSIQQRDICMVFQSYALFPHM----SLGENV 99 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEEEEeCCcccCCCC----CHHHHH
Confidence 4445568999999999999999999999999999999 555432211 112235699999999999988 899999
Q ss_pred HHhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
.|....++.+.....+.+.+ +..-+.+-.+..+...++|+...+.+++.+|++++||||++++|+.+++++++.|
T Consensus 100 ~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 179 (351)
T PRK11432 100 GYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKI 179 (351)
T ss_pred HHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 88755555544433332222 2222222233333344566777778999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccCe
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANK 345 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~ 345 (399)
+++.++. ..++++++||++++...+++++.+.+|++++.+++.+++..|.+..++.+.+.
T Consensus 180 ~~l~~~~-------g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~~a~~~g~ 239 (351)
T PRK11432 180 RELQQQF-------NITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASFMGD 239 (351)
T ss_pred HHHHHhc-------CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchHHHHhcCC
Confidence 9876543 23899999999999999999999999999999999999999998888887664
No 19
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.91 E-value=1.9e-25 Score=221.96 Aligned_cols=207 Identities=14% Similarity=0.129 Sum_probs=159.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
.+....+|++++|+||||||||||+++|+|+.++..| .+....+.. .....++++|+||++.+|+++ ++.+|+
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G-~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~----tv~eNi 97 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG-TIYQGGRDITRLPPQKRDYGIVFQSYALFPNL----TVADNI 97 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEEEEeCCcccCCCC----cHHHHH
Confidence 4445568999999999999999999999999999988 554322111 111245699999999999988 899999
Q ss_pred HHhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
.|....++.+.....+ .++. ++.-+++-.+..+...++|++..+.+++.+|++++||||++++|..+++.+++.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L 177 (353)
T TIGR03265 98 AYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI 177 (353)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 8865544444433332 2222 2222333334444445677777888999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
+++.++. ..++|+++||++++...+++++.+.+|++++.+++.+++..|....++.+.+
T Consensus 178 ~~l~~~~-------~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 236 (353)
T TIGR03265 178 RQLQRRL-------GVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFVG 236 (353)
T ss_pred HHHHHhc-------CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHHhcC
Confidence 9876543 2389999999999999999999999999999999999999998888776654
No 20
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=1.3e-25 Score=205.81 Aligned_cols=218 Identities=12% Similarity=0.068 Sum_probs=166.4
Q ss_pred HHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-c------cccccCCeeEEe
Q 015825 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-P------RAMEKDGVHYHF 184 (399)
Q Consensus 112 ~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-~------~~~~~~~i~yvf 184 (399)
.+.+.+|..++..+.+....+|++++++||||+|||||++.|.|+++|..| .+...... . ....+++.|++|
T Consensus 13 ~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~G-eI~i~G~~i~~ls~~~~~~ir~r~GvlF 91 (263)
T COG1127 13 GVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKG-EILIDGEDIPQLSEEELYEIRKRMGVLF 91 (263)
T ss_pred eeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCC-eEEEcCcchhccCHHHHHHHHhheeEEe
Confidence 455778989988888888889999999999999999999999999999999 55432211 1 112234689999
Q ss_pred cChHHHHHHHhhhhhHHHHHHhccc-cCCcHHHHHHHHHcCCce-----E-EecchhhHHHHHcCCcceeEEEEcCCChH
Q 015825 185 TERSVMEKAIKDGKFLEFASVHGNL-YGTSVEAVEAVADAGKRC-----I-LDIDVQGARSVRASPLDAIFIFICPPSME 257 (399)
Q Consensus 185 q~~~lf~~~~~~~~~~E~~~~~~~~-~g~~~~~i~~~~~~g~~~-----v-ldld~~g~~~l~~~~~~~~~ili~~P~ll 257 (399)
|+..+|..+ ++.||+.|.-+- ...++..+++.+...+.. . .++-|..+....+.+...+.+++.+|+++
T Consensus 92 Q~gALFssl----tV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell 167 (263)
T COG1127 92 QQGALFSSL----TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELL 167 (263)
T ss_pred ecccccccc----chhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEE
Confidence 999999988 999999886433 345666666544321111 1 22222222222334455566999999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcch
Q 015825 258 ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADH 337 (399)
Q Consensus 258 lLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~ 337 (399)
++|||++++||.+...+.+.++++++.+.. |.++||||+++++..+|+++.+.+++++..|+++++...+ +.
T Consensus 168 ~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~-------T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd-~P 239 (263)
T COG1127 168 FLDEPTSGLDPISAGVIDELIRELNDALGL-------TVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASD-DP 239 (263)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHhhCC-------EEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCC-CH
Confidence 999999999999999999999999887644 8999999999999999999999999999999999888653 44
Q ss_pred hhhcc
Q 015825 338 SVSKV 342 (399)
Q Consensus 338 ~v~~~ 342 (399)
.+.++
T Consensus 240 ~v~qf 244 (263)
T COG1127 240 WVRQF 244 (263)
T ss_pred HHHHH
Confidence 55554
No 21
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.1e-25 Score=199.81 Aligned_cols=201 Identities=13% Similarity=0.107 Sum_probs=150.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccc----eeeecCCCc------cccccCCeeEEecChHHHHHHHhhh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF----SVSHTTRAP------RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~----~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
....++++++|+|||||||||++++|........+. .+....... ....++.+|++||.+.-|+ +
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~---- 102 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-M---- 102 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-c----
Confidence 345689999999999999999999999886653321 332211111 1112345899999999998 4
Q ss_pred hhHHHHHHhccccCCcHHHHHHHHHcCC--ceE-------EecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 198 KFLEFASVHGNLYGTSVEAVEAVADAGK--RCI-------LDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~~~~~~g~--~~v-------ldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
+..||+.|..++.|...+...++++..+ ..+ ++-...++...++|++..+.+++..|++++||||++++||
T Consensus 103 SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDP 182 (253)
T COG1117 103 SIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP 182 (253)
T ss_pred hHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCc
Confidence 7899999998888876544444433211 001 1111122333456777788899999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcc
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKV 342 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~ 342 (399)
.+...+.+.+.+++++ +|+|||||++.+|....|+..-+..|.++..+...+++..|..+..+++
T Consensus 183 IsT~kIEeLi~eLk~~---------yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~~~~TedY 247 (253)
T COG1117 183 ISTLKIEELITELKKK---------YTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPKHKRTEDY 247 (253)
T ss_pred hhHHHHHHHHHHHHhc---------cEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCccHHHHHHH
Confidence 9999999999987743 4999999999999999999999999999999999999999987776553
No 22
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.90 E-value=3.7e-25 Score=221.28 Aligned_cols=208 Identities=13% Similarity=0.119 Sum_probs=159.1
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
.+....+|++++|+||||||||||+++|+|+.++..| .+....+.. .....++++|+||++.+|+++ ++.+|+
T Consensus 33 vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~l----tv~eNi 107 (375)
T PRK09452 33 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG-RIMLDGQDITHVPAENRHVNTVFQSYALFPHM----TVFENV 107 (375)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHCCEEEEecCcccCCCC----CHHHHH
Confidence 3445568999999999999999999999999999888 554432211 111235699999999999988 899999
Q ss_pred HHhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
.|....++.+.....+ .++. ++.-+++-.+..+....+|++..+.+++.+|++++||||++++|...++.+++.|
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L 187 (375)
T PRK09452 108 AFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNEL 187 (375)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 8865444444433322 2222 2222223233333334566777778999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccCe
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANK 345 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~ 345 (399)
+++.++. ..++|++|||++++...+++++.+.+|++.+.+++.+++..|.+.+++++.+.
T Consensus 188 ~~l~~~~-------g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~~~~a~~~g~ 247 (375)
T PRK09452 188 KALQRKL-------GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFIGE 247 (375)
T ss_pred HHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHhcCc
Confidence 9877643 23899999999999999999999999999999999999999988888876653
No 23
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.90 E-value=1.9e-23 Score=197.83 Aligned_cols=188 Identities=22% Similarity=0.244 Sum_probs=146.0
Q ss_pred ceeccEEEEEec-CCeeEEEEeeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhhhccCCCceEEEEeCC
Q 015825 33 TVIGDKTYVIAG-SDESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEV 105 (399)
Q Consensus 33 ~~vGD~v~~~~~-~~~~~i~~i~~r~~~~l~rp~~an~~------~~~~p~~~~~~l~~dr~L~~~~~~~~~~~i~~~k~ 105 (399)
|+|||||.++.. +++|+|++|+|| +|.|.||.++|+| ++.+|.+++..+ +|+|+.++..+++++|++||+
T Consensus 1 ~~vGD~V~~~~~~~~~~~i~~i~eR-~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l--~r~l~~~~~~~i~~vIV~NK~ 77 (245)
T TIGR00157 1 LVVGDRVVWEPGNVVKVYGGAIAER-KNELTRPIVANIDQIVIVSSAVLPELSLNQL--DRFLVVAEAQNIEPIIVLNKI 77 (245)
T ss_pred CCCCcEEEEEecCCCceEEEEEecc-cceEECcccccCCEEEEEEECCCCCCCHHHH--HHHHHHHHHCCCCEEEEEECc
Confidence 689999999874 457999999999 8999999999999 677799999999 999999998999999999999
Q ss_pred Ch---HHHH----HHHHHhCCeEEEeccC-cc-------CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee----
Q 015825 106 DT---PYVR----EQKKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS---- 166 (399)
Q Consensus 106 D~---~~~~----~l~~~~g~~v~~~s~~-~~-------~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~---- 166 (399)
|. .... ...+..||+++.+|+. .. .+.+++++|+|+||+|||||+|.|.+.....+| .++
T Consensus 78 DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~l~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~-~i~~~~~ 156 (245)
T TIGR00157 78 DLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEALQNRISVFAGQSGVGKSSLINALDPSVKQQVN-DISSKLG 156 (245)
T ss_pred ccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHhhhcCCEEEEECCCCCCHHHHHHHHhhhhhcccc-ceeccCC
Confidence 93 1111 1224689999998865 22 257899999999999999999999998777666 443
Q ss_pred ---ecCCCccccccCCeeEEecChHHH-------HHHHhhhhhHHHHHHhccc-------cCCcHHHHHHHHHcCC
Q 015825 167 ---HTTRAPRAMEKDGVHYHFTERSVM-------EKAIKDGKFLEFASVHGNL-------YGTSVEAVEAVADAGK 225 (399)
Q Consensus 167 ---~ttr~~~~~~~~~i~yvfq~~~lf-------~~~~~~~~~~E~~~~~~~~-------~g~~~~~i~~~~~~g~ 225 (399)
|||+........ .+|+..+|.+. ........|.|+..+...| ...|.|.+++++++|.
T Consensus 157 ~G~hTT~~~~l~~l~-~~~liDtPG~~~~~l~~~~~~~~~~~f~e~~~~~~~C~f~~C~H~~ep~C~v~~a~~~g~ 231 (245)
T TIGR00157 157 LGKHTTTHVELFHFH-GGLIADTPGFNEFGLWHLEPEQLTQGFVEFRDYLGECKFRDCLHQSEPGCAVRQAVEQGE 231 (245)
T ss_pred CCCCcCCceEEEEcC-CcEEEeCCCccccCCCCCCHHHHHHhCHHHHHHhCCCCCCCCccCCCCCChHHHHHHcCC
Confidence 688887766553 46776554331 1112234677877776655 4577899999988876
No 24
>PRK12289 GTPase RsgA; Reviewed
Probab=99.90 E-value=1.2e-23 Score=207.98 Aligned_cols=156 Identities=22% Similarity=0.219 Sum_probs=125.2
Q ss_pred CCCceeccEEEEEec---CCeeEEEEeeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhhhccCCCceEE
Q 015825 30 ETTTVIGDKTYVIAG---SDESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCL 100 (399)
Q Consensus 30 ~~~~~vGD~v~~~~~---~~~~~i~~i~~r~~~~l~rp~~an~~------~~~~p~~~~~~l~~dr~L~~~~~~~~~~~i 100 (399)
+..|+|||||.++.. ++.|+|++|+|| +|.|.||.+||+| +..+|.+++..| ||||+.++..+++++|
T Consensus 49 ~~~~~vGD~V~~~~~~~~~~~~~I~~vlpR-~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~L--dR~L~~a~~~~ip~IL 125 (352)
T PRK12289 49 GQQVMVGDRVIVEEPDWQGQRGAIAEVLPR-KTELDRPPVANADQILLVFALAEPPLDPWQL--SRFLVKAESTGLEIVL 125 (352)
T ss_pred CCCcccCCEEEEeecCCCCCceEEEEEecc-ccceechhhhcCCEEEEEEECCCCCCCHHHH--HHHHHHHHHCCCCEEE
Confidence 345999999999852 246999999999 9999999999999 556788999999 9999999999999999
Q ss_pred EEeCCCh---HHHHHH---HHHhCCeEEEeccC-cc-------CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee
Q 015825 101 WFLEVDT---PYVREQ---KKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (399)
Q Consensus 101 ~~~k~D~---~~~~~l---~~~~g~~v~~~s~~-~~-------~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~ 166 (399)
++||+|. +..+.+ .+.+||+++.+|+. .. .+.+++++|+|+||+|||||+|.|.+......| .++
T Consensus 126 VlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L~~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~-~vs 204 (352)
T PRK12289 126 CLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALLEQLRNKITVVAGPSGVGKSSLINRLIPDVELRVG-KVS 204 (352)
T ss_pred EEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhhhhccceEEEEeCCCCCHHHHHHHHcCccccccc-ccc
Confidence 9999993 222222 25789999998876 22 247889999999999999999999988776666 454
Q ss_pred -------ecCCCccccccCCeeEEecChHH
Q 015825 167 -------HTTRAPRAMEKDGVHYHFTERSV 189 (399)
Q Consensus 167 -------~ttr~~~~~~~~~i~yvfq~~~l 189 (399)
|||+........+.+++..+|.+
T Consensus 205 ~~~~rGrHTT~~~~l~~l~~g~~liDTPG~ 234 (352)
T PRK12289 205 GKLGRGRHTTRHVELFELPNGGLLADTPGF 234 (352)
T ss_pred CCCCCCCCcCceeEEEECCCCcEEEeCCCc
Confidence 69998877766544577655543
No 25
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=5.1e-25 Score=219.19 Aligned_cols=208 Identities=14% Similarity=0.126 Sum_probs=157.7
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+.++...+|++++|+||||||||||+++|+|+.++..| .+....... .....++++|+||++.+|+++ ++.++
T Consensus 22 ~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~----tv~eN 96 (356)
T PRK11650 22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG-EIWIGGRVVNELEPADRDIAMVFQNYALYPHM----SVREN 96 (356)
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEEEEeCCccccCCC----CHHHH
Confidence 34445568999999999999999999999999999989 555422211 111235699999999999887 89999
Q ss_pred HHHhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 203 ASVHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
+.|....++.+.....+ .++. +...+.+-.+..+...++|++..+.+++.+|++++||||++++|+.+++.+++.
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~ 176 (356)
T PRK11650 97 MAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLE 176 (356)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 98875544444433322 2222 222222222333333456777778899999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
++++.++. ..++|+++||++++...+++++.+.+|++++.+++.+++..|....++.+.+
T Consensus 177 l~~l~~~~-------g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~~~~~~~g 236 (356)
T PRK11650 177 IQRLHRRL-------KTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFVASFIG 236 (356)
T ss_pred HHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccHHHHHHcC
Confidence 99876543 2389999999999999999999999999999999999999998777776544
No 26
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.90 E-value=7.3e-25 Score=218.33 Aligned_cols=212 Identities=13% Similarity=0.081 Sum_probs=159.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcc--cceeeecCCCc--cccccCCeeEEecChHHHHHHHhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMF--GFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~--g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
+..+.+....+|++++|+||||||||||+++|+|+.++.. | .+....... .....+.++|+||++.+|+++
T Consensus 20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G-~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~---- 94 (362)
T TIGR03258 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG-RIAIADRDLTHAPPHKRGLALLFQNYALFPHL---- 94 (362)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCE-EEEECCEECCCCCHHHCCEEEEECCcccCCCC----
Confidence 3333444556899999999999999999999999999988 8 554322111 111235699999999999888
Q ss_pred hhHHHHHHhccccCCcHHHHHHH----HHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 198 KFLEFASVHGNLYGTSVEAVEAV----ADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~~~----~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++.+++.|....++.+.....+. ++. ++..+.+-.+..+...++|++..+.+++.+|++++||||++++|+..++
T Consensus 95 tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~ 174 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRA 174 (362)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 89999988755555554433332 222 2222222233333344567777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
++++.|+++.++. +..+++++|||++++...+++++.+.+|++++.+++.+++..|.+..++.+.+
T Consensus 175 ~l~~~l~~l~~~~------~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 240 (362)
T TIGR03258 175 NMREEIAALHEEL------PELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEFLG 240 (362)
T ss_pred HHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcCcHHHHHhhC
Confidence 9999999876542 12389999999999999999999999999999999999999998777665544
No 27
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=6.5e-25 Score=219.79 Aligned_cols=208 Identities=10% Similarity=0.036 Sum_probs=158.2
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+.+....+|++++|+||||||||||+++|+|+.++..| .+....... .....++++|+||++.+|+++ ++.||
T Consensus 37 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~l----tv~eN 111 (377)
T PRK11607 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAG-QIMLDGVDLSHVPPYQRPINMMFQSYALFPHM----TVEQN 111 (377)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHCCEEEEeCCCccCCCC----CHHHH
Confidence 34455568999999999999999999999999999888 554322111 112345699999999999988 89999
Q ss_pred HHHhccccCCcHHHHHHHH----Hc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 203 ASVHGNLYGTSVEAVEAVA----DA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~----~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
+.|.....+.+.....+.+ +. ++.-+.+-.+..+...++|++..+.+++.+|++++||||++++|...++.+++.
T Consensus 112 i~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 191 (377)
T PRK11607 112 IAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191 (377)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 9886544444444333322 21 222222333334444456777778899999999999999999999999999998
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
+.++.++. ..++|+++||++++...+++++.+.+|++++.+++.+++..|...+++.+.+
T Consensus 192 l~~l~~~~-------g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 251 (377)
T PRK11607 192 VVDILERV-------GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIG 251 (377)
T ss_pred HHHHHHhc-------CCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHHHHHhcC
Confidence 88876543 2489999999999999999999999999999999999999998877776554
No 28
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.90 E-value=4.7e-25 Score=219.38 Aligned_cols=214 Identities=14% Similarity=0.120 Sum_probs=159.2
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc---c-----cccCCeeEEecChHH
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---A-----MEKDGVHYHFTERSV 189 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~---~-----~~~~~i~yvfq~~~l 189 (399)
|......+.++...+|++++|+||||||||||+++|+|+++|..| .+........ . ..+++++|+||++.+
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G-~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAG-QIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCce-EEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 434444444556679999999999999999999999999999999 5543222111 0 114579999999998
Q ss_pred HHHHHhhhhhHHHHHHhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
|+++ ++.+|+.+....++.......+.+.+ ++....+-.+..+...++|++..+.+++.+|++++||||++
T Consensus 83 ~~~~----TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 83 FPHM----TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCCC----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 8887 88899887665555554433322222 11111122222233345667777789999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhccc
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVA 343 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~ 343 (399)
++|+.+++.+++.+.+++++. ..|+|+++||++++...+++++.+.+|.+++.+++++++..|.+..+..+.
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~-------~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~ 230 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATL-------QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFI 230 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHHHHh
Confidence 999999999999999876543 238999999999999999999999999999999999998888877766553
No 29
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=5.9e-25 Score=201.49 Aligned_cols=205 Identities=17% Similarity=0.124 Sum_probs=169.2
Q ss_pred HHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHH
Q 015825 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 112 ~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~ 191 (399)
++.+.+|......+.++...+|++++|+|||||||||++++|++++++..| .|.+...+......+.+||+|....+|+
T Consensus 7 ~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G-~I~~~g~~~~~~~~~rIGyLPEERGLy~ 85 (300)
T COG4152 7 GVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEG-EITWNGGPLSQEIKNRIGYLPEERGLYP 85 (300)
T ss_pred cchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCc-eEEEcCcchhhhhhhhcccChhhhccCc
Confidence 455778877766666677889999999999999999999999999999999 7777666665555667999999999999
Q ss_pred HHHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCceEEecc------hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 192 KAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDID------VQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld------~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
++ ++.+.+.|.+.+.|.+..++++.+..++.. +++. .+.+.+..+|+.+.++++++.|++++||||+++
T Consensus 86 k~----tv~dql~yla~LkGm~~~e~~~~~~~wLer-~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSG 160 (300)
T COG4152 86 KM----TVEDQLKYLAELKGMPKAEIQKKLQAWLER-LEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSG 160 (300)
T ss_pred cC----cHHHHHHHHHHhcCCcHHHHHHHHHHHHHh-ccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccC
Confidence 99 999999999999999999888777655422 1211 112223346778889999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
+||.+.+-+++.+.+++++ ..|+++.+|.++.+-+.|++++.+.+|..+..|+...+
T Consensus 161 LDPVN~elLk~~I~~lk~~--------GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~i 217 (300)
T COG4152 161 LDPVNVELLKDAIFELKEE--------GATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDI 217 (300)
T ss_pred CChhhHHHHHHHHHHHHhc--------CCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHH
Confidence 9999999999988887643 45899999999999999999999999998888775543
No 30
>PRK01889 GTPase RsgA; Reviewed
Probab=99.89 E-value=1.1e-22 Score=202.51 Aligned_cols=131 Identities=22% Similarity=0.248 Sum_probs=109.3
Q ss_pred CCceeccEEEEEecCCeeEEEEeeeCCCceEEccc----------ccCCC-----CCCCCCCCccCccccchhhhhccCC
Q 015825 31 TTTVIGDKTYVIAGSDESIGVKIYDRSTGNWLIPA----------VRGIE-----PRPCKGHSAVLLNEDRILVIKKGSS 95 (399)
Q Consensus 31 ~~~~vGD~v~~~~~~~~~~i~~i~~r~~~~l~rp~----------~an~~-----~~~~p~~~~~~l~~dr~L~~~~~~~ 95 (399)
..|+|||||.+.. ++.|+|++|+|| +|.|.||+ +||+| .+..|+|++.++ ||||++++..+
T Consensus 67 ~~~~vGD~V~~~~-~~~g~I~~i~pR-~~~L~R~~~~~~~~~q~iaANvD~vliV~s~~p~~~~~~l--dr~L~~a~~~~ 142 (356)
T PRK01889 67 DRPAVGDWVLLDN-EKKARIVRLLPR-RSLFSRKAAGTRSEEQLIAANVDTVFIVCSLNHDFNLRRI--ERYLALAWESG 142 (356)
T ss_pred CCCccCcEEEEec-CCceEEEEEECC-CceEEcCCCCCCccceeEEEeCCEEEEEEecCCCCChhHH--HHHHHHHHHcC
Confidence 5599999999975 457999999999 89999998 59999 444799999999 99999999999
Q ss_pred CceEEEEeCCCh--H---HHHHHH-HHhCCeEEEeccC-ccC--------CCCcEEEEEcCCCCCHHHHHhhhhhccCCc
Q 015825 96 SDDCLWFLEVDT--P---YVREQK-KVVGAEVVAWSKG-VIG--------NVEKPVVITGPSGVGKGTLISMLMKEFPSM 160 (399)
Q Consensus 96 ~~~~i~~~k~D~--~---~~~~l~-~~~g~~v~~~s~~-~~~--------~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~ 160 (399)
++|+|++||+|. + ..+.+. ...||+++.+|.. ..+ .+|+.++|+|+||+|||||++.|++...+.
T Consensus 143 i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~ 222 (356)
T PRK01889 143 AEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK 222 (356)
T ss_pred CCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc
Confidence 999999999993 1 222222 2468999998875 222 268999999999999999999999998887
Q ss_pred ccceee
Q 015825 161 FGFSVS 166 (399)
Q Consensus 161 ~g~~i~ 166 (399)
.| .++
T Consensus 223 ~G-~i~ 227 (356)
T PRK01889 223 TG-AVR 227 (356)
T ss_pred ee-eEE
Confidence 77 554
No 31
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.89 E-value=4.7e-22 Score=181.74 Aligned_cols=189 Identities=54% Similarity=0.864 Sum_probs=174.3
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
.....+.++|.||||+||+|++++|...++..+|..++||||.++..+.++.+|+|.+...|..+...+.|+|++.+.++
T Consensus 33 ~p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn 112 (231)
T KOG0707|consen 33 PPGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGN 112 (231)
T ss_pred CCCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcc
Confidence 34456899999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015825 209 LYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQG 288 (399)
Q Consensus 209 ~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~ 288 (399)
+||++.+.+++....++.+++|++.++.+.++...+.++.+++++|+..++.+|+.+++.++++++.++++.+..++...
T Consensus 113 ~yGtsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~ 192 (231)
T KOG0707|consen 113 KYGTSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEIL 192 (231)
T ss_pred cCCchHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHhhhhhhccc
Confidence 99999999988888899999999999999999889999999999999999999999999999999999999777777776
Q ss_pred cCCCcceEEEeC-CCHHHHHHHHHHhhccc
Q 015825 289 KSSGIFDHILYN-DKLEECYENLKKHLGLD 317 (399)
Q Consensus 289 ~~~~~~t~Viv~-hdleea~~~l~~ii~~~ 317 (399)
+.++.||.+++| +++++++..+..++...
T Consensus 193 ~~~g~~d~~~~ns~~lee~~kel~~~~~~~ 222 (231)
T KOG0707|consen 193 ENSGSFDLVIVNSDRLEEAYKELEIFISSD 222 (231)
T ss_pred cCCccccceecCCCchhhhhhhhhhhhhHH
Confidence 667789999999 89999999998876654
No 32
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.88 E-value=5.8e-24 Score=211.41 Aligned_cols=210 Identities=14% Similarity=0.147 Sum_probs=155.1
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
..+.+....+|++++|+||||||||||+++|+|++++..| .+....... .....+.++|+||++.+|+++ ++.
T Consensus 18 l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~----tv~ 92 (353)
T PRK10851 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG-HIRFHGTDVSRLHARDRKVGFVFQHYALFRHM----TVF 92 (353)
T ss_pred EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHCCEEEEecCcccCCCC----cHH
Confidence 3334445568999999999999999999999999999888 554422211 111234699999999888877 888
Q ss_pred HHHHHhcccc----CCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 201 EFASVHGNLY----GTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 201 E~~~~~~~~~----g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
+++.|....+ +.+..... +.++. +.....+-.+..+....+|+...+.+++.+|++++||||++++|+.++
T Consensus 93 eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r 172 (353)
T PRK10851 93 DNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVR 172 (353)
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 9888764331 22333222 22222 111122222222333456677777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
+.+++.|+++.++. ..++++++||++++...+++++.+.+|++++.+++.+++..|.+..++.+.+
T Consensus 173 ~~l~~~L~~l~~~~-------g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g 238 (353)
T PRK10851 173 KELRRWLRQLHEEL-------KFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFMG 238 (353)
T ss_pred HHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHhcC
Confidence 99999999876542 3389999999999999999999999999999999999999998777776544
No 33
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.2e-23 Score=210.53 Aligned_cols=212 Identities=18% Similarity=0.148 Sum_probs=155.8
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
.+....+....+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++.+|+.+ +
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G-~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~----t 91 (369)
T PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG-DLFIGEKRMNDVPPAERGVGMVFQSYALYPHL----S 91 (369)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHhHCCEEEEeCCcccCCCC----C
Confidence 333334455568999999999999999999999999999888 5543221111 11234689999999888876 8
Q ss_pred hHHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++...... .+.++. +....++-.+..+...++|+...+.+++.+|++++||||++++|+.+++.
T Consensus 92 v~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~ 171 (369)
T PRK11000 92 VAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 171 (369)
T ss_pred HHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 8888877544444333322 222222 12112222233333345667777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
+.+.|+++.++. ..++|+++||++++...+++++.+.+|.+.+.+++.+++..|....++.+.+
T Consensus 172 l~~~L~~l~~~~-------g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g 235 (369)
T PRK11000 172 MRIEISRLHKRL-------GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFIG 235 (369)
T ss_pred HHHHHHHHHHHh-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 999998876542 2388999999999999999999999999999999999999888777776544
No 34
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.88 E-value=4.7e-24 Score=207.00 Aligned_cols=207 Identities=20% Similarity=0.181 Sum_probs=157.3
Q ss_pred HHHHhC-CeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc---ccccCCeeEEecChH
Q 015825 113 QKKVVG-AEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AMEKDGVHYHFTERS 188 (399)
Q Consensus 113 l~~~~g-~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~~~~i~yvfq~~~ 188 (399)
+.+.+| ...+..+.++...+|++++|+||||||||||+++|+|+..|..| .+........ ......+||++|++.
T Consensus 10 l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G-~i~i~G~~~~~~~~~~~~~igy~~~~~~ 88 (293)
T COG1131 10 LTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG-EILVLGYDVVKEPAKVRRRIGYVPQEPS 88 (293)
T ss_pred eEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEEcCEeCccCHHHHHhheEEEccCCC
Confidence 445667 56666666677779999999999999999999999999999888 6654332211 122345899999999
Q ss_pred HHHHHHhhhhhHHHHHHhccccCCcH----HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 189 VMEKAIKDGKFLEFASVHGNLYGTSV----EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 189 lf~~~~~~~~~~E~~~~~~~~~g~~~----~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
+++.+ ++.|++.|...+|+.+. +.+.+.++. ++....+-....+....++++..+.+|+.+|++++||||+
T Consensus 89 ~~~~l----T~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt 164 (293)
T COG1131 89 LYPEL----TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164 (293)
T ss_pred CCccc----cHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 89988 99999999999998763 234444433 1111001112222333567778888999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+++|+.++..+++.|+.+..+ +..++++.+|.++++...+++++.+.+|.++..+++.++.
T Consensus 165 ~GLDp~~~~~~~~~l~~l~~~-------g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~ 225 (293)
T COG1131 165 SGLDPESRREIWELLRELAKE-------GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELK 225 (293)
T ss_pred cCCCHHHHHHHHHHHHHHHhC-------CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999997753 2248899999999999999999999999999988766543
No 35
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.88 E-value=1.1e-23 Score=198.32 Aligned_cols=212 Identities=16% Similarity=0.088 Sum_probs=149.7
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHHHHHHHh
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~lf~~~~~ 195 (399)
..+..+.++...+|++++|+||||||||||+++|+|.++|..| .+....++... ...+.++|++|+......+
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G-~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~-- 91 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG-EVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL-- 91 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCC-EEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc--
Confidence 4444445556678999999999999999999999999999999 66554433221 1223589999986443333
Q ss_pred hhhhHHHHHHhcc----ccC-CcHH---HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 196 DGKFLEFASVHGN----LYG-TSVE---AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 196 ~~~~~E~~~~~~~----~~g-~~~~---~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
++.|.+.+... .++ ...+ .+.++++. +...+.+-....+....+|+...+.+|+.+|++++||||++.+
T Consensus 92 --tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~L 169 (258)
T COG1120 92 --TVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHL 169 (258)
T ss_pred --EEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCcccc
Confidence 55555544322 222 1222 23333322 1111111111112223456666777999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhccc
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVA 343 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~ 343 (399)
|..++-++++.++++.++. ..++|++.||++.|...+++++.+.+|.+...|+|+++++......|+...
T Consensus 170 Di~~Q~evl~ll~~l~~~~-------~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vygv~ 239 (258)
T COG1120 170 DIAHQIEVLELLRDLNREK-------GLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGVD 239 (258)
T ss_pred CHHHHHHHHHHHHHHHHhc-------CCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhCCc
Confidence 9999999999999987652 348999999999999999999999999999999999998887666766554
No 36
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.88 E-value=1.4e-23 Score=209.89 Aligned_cols=218 Identities=16% Similarity=0.106 Sum_probs=161.6
Q ss_pred HHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCC----Cc--------cccccCCe
Q 015825 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR----AP--------RAMEKDGV 180 (399)
Q Consensus 113 l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr----~~--------~~~~~~~i 180 (399)
+.+.+|..+...+.++...+|++++|+||||||||||+++|+|+++|..| .+..... .. +.....++
T Consensus 30 ~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G-~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 30 ILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRG-SVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEECCEecccccccCCHHHHHHHhcCCE
Confidence 44778877777667777789999999999999999999999999999999 5544321 10 01112469
Q ss_pred eEEecChHHHHHHHhhhhhHHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCC
Q 015825 181 HYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPS 255 (399)
Q Consensus 181 ~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~ 255 (399)
+|+||++.+|+++ ++.+++.+.....+...... .+.++. ++....+..+..+....+++...+.+|+.+|+
T Consensus 109 ~~vfQ~~~l~p~~----Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 109 SMVFQKFALMPWL----TVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred EEEECCCcCCCCC----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999888876 88888877644444433322 222222 22222222222333345666777779999999
Q ss_pred hHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 256 MEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 256 lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+++||||++++|+.++.++++.|.++.++. ..++++++||++++.+.+++++.+.+|.+++.+++.++...|.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~-------~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~ 257 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKL-------NKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPA 257 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcc
Confidence 999999999999999999999999876543 2389999999999999999999999999999999888888887
Q ss_pred chhhhcc
Q 015825 336 DHSVSKV 342 (399)
Q Consensus 336 ~~~v~~~ 342 (399)
...++.+
T Consensus 258 ~~~~~~~ 264 (382)
T TIGR03415 258 NDYVADF 264 (382)
T ss_pred hHHHHHH
Confidence 6655544
No 37
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.88 E-value=2e-23 Score=206.48 Aligned_cols=207 Identities=13% Similarity=0.068 Sum_probs=152.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+..+.++...+|++++|+||||||||||+++|+|+.+|..| .+........ ...+..++|+||++.+|+.+
T Consensus 20 ~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G-~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~- 97 (343)
T TIGR02314 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG-SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR- 97 (343)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC-
Confidence 34444455679999999999999999999999999999988 5543222111 11234699999998887765
Q ss_pred hhhhhHHHHHHhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 195 KDGKFLEFASVHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+.....+.+.....+ .++. ++....+..+..+...++|+...+.+|+.+|+++++|||++++|+.
T Consensus 98 ---tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~ 174 (343)
T TIGR02314 98 ---TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174 (343)
T ss_pred ---cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 8888887765444444433332 2222 2222223333334444567777888999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
++..+.+.|+++.++. ..++|+++|+++.+.+.+++++.+.+|+++..+++.+++..|......
T Consensus 175 t~~~i~~lL~~l~~~~-------g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~~~~~ 238 (343)
T TIGR02314 175 TTQSILELLKEINRRL-------GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQ 238 (343)
T ss_pred HHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCcHHHH
Confidence 9999999999987543 238999999999999999999999999999989888888777544433
No 38
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.87 E-value=3.1e-21 Score=178.14 Aligned_cols=183 Identities=37% Similarity=0.601 Sum_probs=159.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
..+++++|+||||||||||++.|....+ .++..++||||+++..+..|..|+|.+...|..++..+.|+++..+.+++|
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y 89 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY 89 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence 4789999999999999999999986643 466688999999999999999999999999998888889999999999999
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
|++...+...++.|..++++++.+++..++...+....+|+.+|+..++.+|+..|+.++.+.+.+++..+..++...
T Consensus 90 Gt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~~-- 167 (206)
T PRK14738 90 GVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQL-- 167 (206)
T ss_pred cCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc--
Confidence 999999999999999999999999999898888888899999999999999999998778889999999887665432
Q ss_pred CCcceEEEeC--CCHHHHHHHHHHhhccc
Q 015825 291 SGIFDHILYN--DKLEECYENLKKHLGLD 317 (399)
Q Consensus 291 ~~~~t~Viv~--hdleea~~~l~~ii~~~ 317 (399)
..+++++++ .++++++..+.+++...
T Consensus 168 -~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 168 -PEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred -cCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 235777777 48999999998877644
No 39
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=8.3e-23 Score=181.77 Aligned_cols=177 Identities=16% Similarity=0.152 Sum_probs=137.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
..+|+.++++||||||||||+|.++|...|..| .+....|+.... -...|.+||+..++|++ ++++|++|...+
T Consensus 28 ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G-~i~l~~r~i~gP-gaergvVFQ~~~LlPWl----~~~dNvafgL~l 101 (259)
T COG4525 28 IASGELVVVLGPSGCGKTTLLNLIAGFVTPSRG-SIQLNGRRIEGP-GAERGVVFQNEALLPWL----NVIDNVAFGLQL 101 (259)
T ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCcCcccc-eEEECCEeccCC-CccceeEeccCccchhh----HHHHHHHHHHHh
Confidence 458999999999999999999999999999988 665544432211 12358999999999999 999999999999
Q ss_pred cCCcHHHHHHHHHcCCceE--Eecc---hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 015825 210 YGTSVEAVEAVADAGKRCI--LDID---VQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284 (399)
Q Consensus 210 ~g~~~~~i~~~~~~g~~~v--ldld---~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~ 284 (399)
.|.++.+..+...+.+..+ -+.+ +..+....+|+...+.++.++|.+++||||+.++|..+++.+|+.|-.++++
T Consensus 102 ~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~ 181 (259)
T COG4525 102 RGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE 181 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHH
Confidence 9998877666544311110 0000 0011112456667778999999999999999999999999999999998876
Q ss_pred HHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 285 IKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
-.. .+.++|||++||+....++++++.+
T Consensus 182 tgk-------~~lliTH~ieEAlflatrLvvlsp~ 209 (259)
T COG4525 182 TGK-------QVLLITHDIEEALFLATRLVVLSPG 209 (259)
T ss_pred hCC-------eEEEEeccHHHHHhhhheeEEecCC
Confidence 433 6789999999999999999999854
No 40
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.87 E-value=4.8e-23 Score=181.43 Aligned_cols=193 Identities=18% Similarity=0.179 Sum_probs=143.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee-----ecCCCccccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-----HTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~-----~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
.....|++++|+||||+|||||+|.++|...|..| .++ ||..++... -++++||+..+|.++ ++.+|
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G-~i~i~g~d~t~~~P~~R---PVSmlFQEnNLFaHL----tV~qN 91 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASG-EILINGVDHTASPPAER---PVSMLFQENNLFAHL----TVAQN 91 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCc-eEEEcCeecCcCCcccC---Chhhhhhccccchhh----hhhhh
Confidence 34568999999999999999999999999999999 554 455444332 278999999999999 88888
Q ss_pred HHHhcc----ccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 203 ASVHGN----LYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 203 ~~~~~~----~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
+.+.-+ +....++.+..++.. |..-+++--|..+...++|+...+.+|+.+-++++||||++++||..+.++...
T Consensus 92 igLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~L 171 (231)
T COG3840 92 IGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL 171 (231)
T ss_pred hcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHH
Confidence 876432 112223333333222 222122111222233345666677789998889999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+..+..+-. .|+++|||.++++....++++...+|++...+...+.+....
T Consensus 172 v~~l~~E~~-------~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 172 VSQLCDERK-------MTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred HHHHHHhhC-------CEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 999887643 399999999999999999999999999998887766665433
No 41
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.8e-23 Score=207.38 Aligned_cols=219 Identities=13% Similarity=0.097 Sum_probs=157.9
Q ss_pred HHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--------ccccCCeeEEe
Q 015825 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--------AMEKDGVHYHF 184 (399)
Q Consensus 113 l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--------~~~~~~i~yvf 184 (399)
+.+.+|..+...+.++...+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+|
T Consensus 34 ~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG-~I~i~G~~i~~~~~~~l~~~~~~~igyv~ 112 (400)
T PRK10070 34 ILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG-QVLIDGVDIAKISDAELREVRRKKIAMVF 112 (400)
T ss_pred HHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC-EEEECCEECCcCCHHHHHHHHhCCEEEEE
Confidence 44666765555445566779999999999999999999999999999989 5554322111 01124689999
Q ss_pred cChHHHHHHHhhhhhHHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHH
Q 015825 185 TERSVMEKAIKDGKFLEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 185 q~~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
|++.+|+.+ ++.+++.+....++...... .+.++. ++....+-.+..+...++|+...+.+++.+|++++|
T Consensus 113 Q~~~l~~~~----Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 113 QSFALMPHM----TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCcCCCCC----CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 998888766 78888877544444433322 222222 111112222222333456667777899999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
|||++++|+.+++.+++.|.++.++. ..++|+++|+++++...+++++.+.+|++++.+++.+++..|.+..+
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~-------g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v 261 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKH-------QRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV 261 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHC-------CCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHH
Confidence 99999999999999999999875432 23889999999999999999999999999988888888888876665
Q ss_pred hccc
Q 015825 340 SKVA 343 (399)
Q Consensus 340 ~~~~ 343 (399)
..+.
T Consensus 262 ~~~~ 265 (400)
T PRK10070 262 RTFF 265 (400)
T ss_pred HHHH
Confidence 5443
No 42
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=6.3e-23 Score=192.23 Aligned_cols=197 Identities=17% Similarity=0.127 Sum_probs=152.3
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-----ccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
+....+|+.++|+||||||||||+++|+|+++|..| .+.....+ .....++.+||+||+++.+ +...++.+
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G-~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q---~~~~tV~~ 99 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG-EVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQ---LFGPTVED 99 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCC-EEEECCeeccchhhHHHhhcceEEEEECcccc---cccCcHHH
Confidence 344568999999999999999999999999999999 44332211 1122234599999998643 22227888
Q ss_pred HHHHhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHH
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~ 276 (399)
.+.|.....+.+.+++++++.+ +...+.+-.+..+...++|+...+.+++..|++++||||++++|+..++++.+
T Consensus 100 evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~ 179 (235)
T COG1122 100 EVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE 179 (235)
T ss_pred HHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 8999888888888776665544 22222333444444456778888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
.+.++..+. ..|+|+++||++.+...+++++.+.+|.++..++|.+++..+
T Consensus 180 ~l~~L~~~~-------~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 180 LLKKLKEEG-------GKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHHHhcC-------CCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999987542 238999999999999999999999999999999887766553
No 43
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=1e-22 Score=181.80 Aligned_cols=216 Identities=13% Similarity=0.091 Sum_probs=159.9
Q ss_pred HHHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee----cCCCccccccCCeeEEecC
Q 015825 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH----TTRAPRAMEKDGVHYHFTE 186 (399)
Q Consensus 111 ~~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~----ttr~~~~~~~~~i~yvfq~ 186 (399)
+++.|.++...+....+....+|++++|+|||||||||.+.|+.|+.++..|..... |.-+.....+-|+||++|+
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE 87 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQE 87 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccccccc
Confidence 456788888887777777788999999999999999999999999999999944332 2223333345589999999
Q ss_pred hHHHHHHHhhhhhHHHHHHhccccCCcHH--HHH----HHHHcCCceEEecchh---hHHHHHcCCcceeEEEEcCCChH
Q 015825 187 RSVMEKAIKDGKFLEFASVHGNLYGTSVE--AVE----AVADAGKRCILDIDVQ---GARSVRASPLDAIFIFICPPSME 257 (399)
Q Consensus 187 ~~lf~~~~~~~~~~E~~~~~~~~~g~~~~--~i~----~~~~~g~~~vldld~~---g~~~l~~~~~~~~~ili~~P~ll 257 (399)
++.|..+ ++.+|+............ ..+ +.+++-. +-.+..+ .+....+.+...+.+++.+|.+.
T Consensus 88 ~SIFr~L----tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~--i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi 161 (243)
T COG1137 88 ASIFRKL----TVEDNIMAVLEIREKDLKKAERKEELDALLEEFH--ITHLRDSKAYSLSGGERRRVEIARALAANPKFI 161 (243)
T ss_pred chHhhcC----cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhc--hHHHhcCcccccccchHHHHHHHHHHhcCCCEE
Confidence 9999988 888887665544332222 111 2222211 0000000 00001233445666999999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcch
Q 015825 258 ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADH 337 (399)
Q Consensus 258 lLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~ 337 (399)
+||||+++.||..-.+|++.++.++.. ..-++|..|+..|++..+++.+.+.+|.+...|+|.++.++|.++
T Consensus 162 LLDEPFAGVDPiaV~dIq~iI~~L~~r--------giGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~Vr 233 (243)
T COG1137 162 LLDEPFAGVDPIAVIDIQRIIKHLKDR--------GIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVR 233 (243)
T ss_pred EecCCccCCCchhHHHHHHHHHHHHhC--------CceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhhh
Confidence 999999999999999999999987643 336678888999999999999999999999999999999999877
Q ss_pred hhh
Q 015825 338 SVS 340 (399)
Q Consensus 338 ~v~ 340 (399)
.++
T Consensus 234 ~~Y 236 (243)
T COG1137 234 RVY 236 (243)
T ss_pred hhc
Confidence 765
No 44
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.86 E-value=3.3e-23 Score=185.16 Aligned_cols=192 Identities=16% Similarity=0.102 Sum_probs=150.1
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee---cCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH---TTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~---ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
+....|++++++|||||||||++++|+.++.|..|..... +.+.+. ..+.++|.+|....+|..+ +..|++.
T Consensus 23 F~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~-~vrr~IGVl~~e~glY~Rl----T~rEnl~ 97 (245)
T COG4555 23 FEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS-FVRRKIGVLFGERGLYARL----TARENLK 97 (245)
T ss_pred EEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChH-HHhhhcceecCCcChhhhh----hHHHHHH
Confidence 4456999999999999999999999999999999943332 233332 2345689999888889888 9999999
Q ss_pred HhccccCCcHHHHHHHHHcCCceEEecc------hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 205 VHGNLYGTSVEAVEAVADAGKRCILDID------VQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g~~~vldld------~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
|.+.+|+....++++..++-. ..+++. .-++....+|+...+.+++++|++.++|||++++|..+...+++.+
T Consensus 98 ~Fa~L~~l~~~~~kari~~l~-k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi 176 (245)
T COG4555 98 YFARLNGLSRKEIKARIAELS-KRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFI 176 (245)
T ss_pred HHHHHhhhhhhHHHHHHHHHH-HHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHH
Confidence 999999998887776654411 111211 1111222456677778999999999999999999999999999998
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
.+++.+ .-.+|+.+|.++|+-+.||+++.+.+|.++..++++.+...
T Consensus 177 ~q~k~e--------gr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 177 KQLKNE--------GRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HHhhcC--------CcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 886642 22788999999999999999999999999999998876644
No 45
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.86 E-value=2.1e-20 Score=168.30 Aligned_cols=179 Identities=51% Similarity=0.785 Sum_probs=155.3
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~ 212 (399)
|++++|+||||||||||++.|++..+.. ...++++||++...+..+..|+|.+...|......+.+.++..+.+++|+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~-~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 79 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNL-KFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGT 79 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccc-cccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCC
Confidence 6899999999999999999999987653 336678999988888888899999988888877788888888888899999
Q ss_pred cHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCC
Q 015825 213 SVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSG 292 (399)
Q Consensus 213 ~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~ 292 (399)
....+.+.+.++..+++|++..+...++........+++.+|+.+.+.+|+..++..+.+++.+++.....++.. .+
T Consensus 80 ~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~~~---~~ 156 (180)
T TIGR03263 80 PKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAH---AD 156 (180)
T ss_pred cHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc---cc
Confidence 999999999999999999999998888877777778888889899999999999888889999999887655543 45
Q ss_pred cceEEEeCCCHHHHHHHHHHhhc
Q 015825 293 IFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 293 ~~t~Viv~hdleea~~~l~~ii~ 315 (399)
.||.++.|+++++++..+..++.
T Consensus 157 ~~d~~i~n~~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 157 EFDYVIVNDDLEKAVEELKSIIL 179 (180)
T ss_pred cCcEEEECCCHHHHHHHHHHHHh
Confidence 69999999999999999988653
No 46
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.6e-22 Score=201.24 Aligned_cols=205 Identities=15% Similarity=0.109 Sum_probs=151.4
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecChHHHHHHHhhhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+++ +
T Consensus 18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G-~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~----t 92 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKG-RIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHY----K 92 (352)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccccccccchhhCCEEEEcCCcccCCCC----c
Confidence 344568999999999999999999999999999888 554322111 111234689999998888776 7
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
+.+++.+... ....+.+.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.
T Consensus 93 v~enl~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~ 170 (352)
T PRK11144 93 VRGNLRYGMA--KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY 170 (352)
T ss_pred HHHHHHhhhh--hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 8888766422 1122333333332 221122222222333456667777899999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccCe
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANK 345 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~ 345 (399)
|+++.++. ..++++++||++++...+++++.+.+|++.+.+++.+++..|....++.+.+.
T Consensus 171 L~~l~~~~-------g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~~~~~~~~g~ 231 (352)
T PRK11144 171 LERLAREI-------NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAMRPWLPKEEQ 231 (352)
T ss_pred HHHHHHhc-------CCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcchhhhhcccCc
Confidence 98876432 23889999999999999999999999999999999999999988887776553
No 47
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=2.3e-23 Score=191.82 Aligned_cols=216 Identities=14% Similarity=0.133 Sum_probs=157.9
Q ss_pred HHHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee----cCCCccccccCCeeEEecC
Q 015825 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH----TTRAPRAMEKDGVHYHFTE 186 (399)
Q Consensus 111 ~~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~----ttr~~~~~~~~~i~yvfq~ 186 (399)
+++.+.+|--+...+.++...+|++++|+|||||||||++|+|.|.++|+.|..+.. +.-++....+.|+..-||.
T Consensus 8 ~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~ 87 (250)
T COG0411 8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQI 87 (250)
T ss_pred ccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccc
Confidence 345566776666666667778999999999999999999999999999999944432 2333444445678888999
Q ss_pred hHHHHHHHhhhhhHHHHHHhcccc-------CC-----cHHHHHHHHHcCCceEEecchhh------HHHHHcCCcceeE
Q 015825 187 RSVMEKAIKDGKFLEFASVHGNLY-------GT-----SVEAVEAVADAGKRCILDIDVQG------ARSVRASPLDAIF 248 (399)
Q Consensus 187 ~~lf~~~~~~~~~~E~~~~~~~~~-------g~-----~~~~i~~~~~~g~~~vldld~~g------~~~l~~~~~~~~~ 248 (399)
..+|+.+ ++.||+......+ +. ...+..+..... ...+.+.... +...++..+..+.
T Consensus 88 ~rlF~~l----TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~-Le~vgL~~~a~~~A~~LsyG~qR~LEIAr 162 (250)
T COG0411 88 TRLFPGL----TVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL-LEFVGLGELADRPAGNLSYGQQRRLEIAR 162 (250)
T ss_pred ccccCCC----cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHH-HHHcCCchhhcchhhcCChhHhHHHHHHH
Confidence 9999998 9999987653321 11 112222211111 1112221111 1111334456677
Q ss_pred EEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
++++.|++++||||.+++.+...+++.+.+++++++. ..+++++.||++-++..+++++++..|+++.+|+|.
T Consensus 163 ALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~-------g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 163 ALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRG-------GVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235 (250)
T ss_pred HHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcC-------CcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHH
Confidence 9999999999999999999988899999999877542 348899999999999999999999999999999999
Q ss_pred cccCCCcchh
Q 015825 329 KGIDLPADHS 338 (399)
Q Consensus 329 ~~~~~p~~~~ 338 (399)
++.+.|.+..
T Consensus 236 eV~~dp~Vie 245 (250)
T COG0411 236 EVRNNPRVIE 245 (250)
T ss_pred HHhcCHHhHH
Confidence 9999987654
No 48
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.85 E-value=1.6e-22 Score=197.53 Aligned_cols=203 Identities=16% Similarity=0.105 Sum_probs=146.6
Q ss_pred HhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc---ccccCCeeEEecChHHHHH
Q 015825 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 116 ~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~~~~i~yvfq~~~lf~~ 192 (399)
.++-..+..+.++...+|++++|+||||||||||+++|+|+++|..| .+.....+.. ......++|+||++.+|+.
T Consensus 16 ~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G-~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~ 94 (306)
T PRK13537 16 RYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG-SISLCGEPVPSRARHARQRVGVVPQFDNLDPD 94 (306)
T ss_pred EECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEecccchHHHHhcEEEEeccCcCCCC
Confidence 34433344444455678999999999999999999999999999888 5543222211 1123468999999887776
Q ss_pred HHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCceEEec------chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDI------DVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldl------d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
+ ++.|++.+.+..|+.+.......+.+... .+++ ....+....+++...+.+++.+|++++||||++++
T Consensus 95 ~----tv~e~l~~~~~~~~~~~~~~~~~~~~~l~-~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gL 169 (306)
T PRK13537 95 F----TVRENLLVFGRYFGLSAAAARALVPPLLE-FAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGL 169 (306)
T ss_pred C----cHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCC
Confidence 6 88899887776777654433322211110 1111 11222223456677778999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
|+.++..+++.++++.++ ..++++++|+++++...+++++.+.+|.++..+++.++..
T Consensus 170 D~~~~~~l~~~l~~l~~~--------g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 170 DPQARHLMWERLRSLLAR--------GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CHHHHHHHHHHHHHHHhC--------CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999886431 3488999999999999999999999999998888766543
No 49
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.85 E-value=7e-22 Score=181.89 Aligned_cols=200 Identities=17% Similarity=0.117 Sum_probs=141.3
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-----cccCCeeEEecChHH--HHHHHhhhhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-----MEKDGVHYHFTERSV--MEKAIKDGKF 199 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-----~~~~~i~yvfq~~~l--f~~~~~~~~~ 199 (399)
+.+..+|++++|+|+||||||||.++|+|+.++..| .+.....+... ...+.+.++||++.- -|.. ++
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G-~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~----tv 101 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG-SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR----TV 101 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCc-eEEECCcccCccccchhhccceeEEecCCccccCcch----hH
Confidence 345569999999999999999999999999999999 66543322211 234568899999642 2333 33
Q ss_pred HHHHHHhccccCCcH--HHHHHHHHc-CC-ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 200 LEFASVHGNLYGTSV--EAVEAVADA-GK-RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~--~~i~~~~~~-g~-~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
.+.+.-.....+..+ ..+.+.++. |+ ..+++.-|..+...++|+...+.+++.+|+++++|||++++|...+.++.
T Consensus 102 ~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Il 181 (252)
T COG1124 102 GRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQIL 181 (252)
T ss_pred HHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHH
Confidence 333322222223322 223333322 11 01111122223334566777778999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
..+.+++++.+ .++++++||+..+...|+++++|.+|.++......++...|....
T Consensus 182 nlL~~l~~~~~-------lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~y 237 (252)
T COG1124 182 NLLLELKKERG-------LTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPY 237 (252)
T ss_pred HHHHHHHHhcC-------ceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccHH
Confidence 99999887753 389999999999999999999999999999888888887765443
No 50
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=2.6e-22 Score=185.48 Aligned_cols=183 Identities=18% Similarity=0.162 Sum_probs=134.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec---CCC----ccccccCCeeEEecChHHHHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT---TRA----PRAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t---tr~----~~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
.++...+|++++|+||||||||||+++|.++..|..|...... +.. ........+||+||++.+++.+ +
T Consensus 24 v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~l----t 99 (226)
T COG1136 24 VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDL----T 99 (226)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCC----C
Confidence 3355679999999999999999999999999999888323221 111 1123345699999999999888 9
Q ss_pred hHHHHHHhccccCCcHH----HHHHHHHc-CCceEEe-cchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 199 FLEFASVHGNLYGTSVE----AVEAVADA-GKRCILD-IDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vld-ld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
+.||+.+...+.+.+.. .+...++. ++..... -.|..+...++|++..+.+++.+|++.+.||||.++|..+.+
T Consensus 100 v~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~ 179 (226)
T COG1136 100 VLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179 (226)
T ss_pred HHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHH
Confidence 99999876555554432 22222222 2221111 223344445677788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
.+.+.+.++.++. ..++|+||||.+-|. .+++++.+.+|.
T Consensus 180 ~V~~ll~~~~~~~-------g~tii~VTHd~~lA~-~~dr~i~l~dG~ 219 (226)
T COG1136 180 EVLELLRELNKER-------GKTIIMVTHDPELAK-YADRVIELKDGK 219 (226)
T ss_pred HHHHHHHHHHHhc-------CCEEEEEcCCHHHHH-hCCEEEEEeCCe
Confidence 9999999987653 338999999986665 899999998886
No 51
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.84 E-value=2.9e-22 Score=195.49 Aligned_cols=197 Identities=19% Similarity=0.105 Sum_probs=140.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||+..+|+.+ +
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~----t 82 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG-TARVAGYDVVREPRKVRRSIGIVPQYASVDEDL----T 82 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccCHHHHHhhcEEecCCCCCCCCC----c
Confidence 33334455679999999999999999999999999999888 555422111 111234589999998777765 7
Q ss_pred hHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.|++.+....++..... +.+.++. +.....+-.+..+....++++..+.+++.+|++++||||++++|+.+++.
T Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 162 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA 162 (302)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 788887765556554332 2222222 11111111122222334566777789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+++.++++.++ ..++++++|+++++...+++++.+.+|+++..+++.++.
T Consensus 163 l~~~l~~~~~~--------g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 212 (302)
T TIGR01188 163 IWDYIRALKEE--------GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELK 212 (302)
T ss_pred HHHHHHHHHhC--------CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999886532 238899999999999999999999999998877765543
No 52
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=6.2e-22 Score=185.57 Aligned_cols=195 Identities=12% Similarity=0.145 Sum_probs=134.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-cccCCeeEEecChHH---HHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-MEKDGVHYHFTERSV---MEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-~~~~~i~yvfq~~~l---f~~~~~~~~~~E 201 (399)
.+....+|++++|+||||||||||++.|+|+++|..| .+.....+... .....+||+||...+ ||- ++.|
T Consensus 23 i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G-~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~-----tV~d 96 (254)
T COG1121 23 ISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG-EIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPI-----TVKD 96 (254)
T ss_pred cEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcc-eEEEccccccccccCCeEEEcCcccccCCCCCc-----CHHH
Confidence 3455679999999999999999999999999999999 66543332211 112359999996522 331 5666
Q ss_pred HHHHhcc----ccCC----cHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 202 FASVHGN----LYGT----SVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 202 ~~~~~~~----~~g~----~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++..... +++. .++.+.++++. ++..+.+-....+...+.|+...+.+|+.+|++++||||+.+.|+.++.
T Consensus 97 ~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~ 176 (254)
T COG1121 97 VVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK 176 (254)
T ss_pred HHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHH
Confidence 6554321 1111 12444444433 2211111111112223455566677999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
.+.+.|.+++++ .+++++++||+..+.+.+++++.+.+ .+...+++++.++.+.
T Consensus 177 ~i~~lL~~l~~e--------g~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~~~~~ 230 (254)
T COG1121 177 EIYDLLKELRQE--------GKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVLTEEN 230 (254)
T ss_pred HHHHHHHHHHHC--------CCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhccCHHH
Confidence 999999998754 45999999999999999999887775 5677788887776654
No 53
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.84 E-value=3.9e-22 Score=197.37 Aligned_cols=205 Identities=17% Similarity=0.129 Sum_probs=146.4
Q ss_pred HHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHH
Q 015825 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 115 ~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~ 191 (399)
+.++-..+..+.++...+|++++|+||||||||||+++|+|+++|..| .+.....+. .......++|+||+..+++
T Consensus 49 k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G-~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~ 127 (340)
T PRK13536 49 KSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAG-KITVLGVPVPARARLARARIGVVPQFDNLDL 127 (340)
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCce-EEEECCEECCcchHHHhccEEEEeCCccCCC
Confidence 344444444444455679999999999999999999999999999888 555432221 1122346999999987776
Q ss_pred HHHhhhhhHHHHHHhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 192 KAIKDGKFLEFASVHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
.+ ++.+++.+.+..|+.......+ .++. ++....+-.+..+....++++..+.+++.+|++++||||++++
T Consensus 128 ~~----tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gL 203 (340)
T PRK13536 128 EF----TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGL 203 (340)
T ss_pred CC----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 65 7888887766666654332222 2221 1111111112222333456677778999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
|+.++..+++.|.++.++ ..++++++|+++++...+++++.+.+|+++..+++.++..
T Consensus 204 D~~~r~~l~~~l~~l~~~--------g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 204 DPHARHLIWERLRSLLAR--------GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CHHHHHHHHHHHHHHHhC--------CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999987532 2389999999999999999999999999998888776643
No 54
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.1e-21 Score=188.23 Aligned_cols=215 Identities=14% Similarity=0.107 Sum_probs=149.2
Q ss_pred HHHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----c---cccCCeeE
Q 015825 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----A---MEKDGVHY 182 (399)
Q Consensus 111 ~~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~---~~~~~i~y 182 (399)
.++.+.++...+..+.+....+|++++|+||||||||||+++|+|++++..| .+........ . .....++|
T Consensus 28 ~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G-~i~i~g~~~~~~~~~~~~~~~~~~i~~ 106 (269)
T cd03294 28 EEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSG-KVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred hhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEccccChhhhhhhhcCcEEE
Confidence 3556777776666666666779999999999999999999999999999888 5543221110 0 11245899
Q ss_pred EecChHHHHHHHhhhhhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChH
Q 015825 183 HFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSME 257 (399)
Q Consensus 183 vfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~ll 257 (399)
+||++.+|+.+ ++.+++.+....++..... +.+.++. +....++-.+..+....+++...+.+++.+|+++
T Consensus 107 v~q~~~~~~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~il 182 (269)
T cd03294 107 VFQSFALLPHR----TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL 182 (269)
T ss_pred EecCcccCCCC----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998776554 6777776543333322222 2222222 1111111111222233456666777999999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcch
Q 015825 258 ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADH 337 (399)
Q Consensus 258 lLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~ 337 (399)
+||||++++|+.+++.+.+.+.++..+. ..++++++|+++++...+++++.+.+|.+...+++.++++.|...
T Consensus 183 lLDEPt~~LD~~~~~~l~~~l~~~~~~~-------g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 255 (269)
T cd03294 183 LMDEAFSALDPLIRREMQDELLRLQAEL-------QKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPAND 255 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcH
Confidence 9999999999999999999998865431 238899999999998899999999999988888777776665433
No 55
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=8.1e-22 Score=195.55 Aligned_cols=203 Identities=14% Similarity=0.112 Sum_probs=145.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+..+.++...+|++++|+||||||||||+++|+|+++|..| .+........ ...+..++|+||++.+|+.+
T Consensus 20 il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~- 97 (343)
T PRK11153 20 ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG-RVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR- 97 (343)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC-
Confidence 33334455679999999999999999999999999999888 5543221111 11134689999998777655
Q ss_pred hhhhhHHHHHHhccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 195 KDGKFLEFASVHGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+....++.+..... +.++. +.....+-.+..+...++++...+.+++.+|++++||||++++|+.
T Consensus 98 ---tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~ 174 (343)
T PRK11153 98 ---TVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174 (343)
T ss_pred ---cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 778887765444444433222 22222 1111112222223334566677778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcc
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~ 336 (399)
++..+.+.|+++.++. ..++++++|+++++...+++++.+.+|.++..+++.+++..|..
T Consensus 175 ~~~~l~~~L~~l~~~~-------g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 234 (343)
T PRK11153 175 TTRSILELLKDINREL-------GLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKH 234 (343)
T ss_pred HHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999875432 23889999999999999999999999999888887777766543
No 56
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.3e-21 Score=179.12 Aligned_cols=195 Identities=17% Similarity=0.181 Sum_probs=141.1
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-------cccccCCeeEEecChHHHHHHHh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-------RAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-------~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
....+....+|++++|+||||||||||+++|.++..+..| .+....... ....+..+||+||.+.+.+.+
T Consensus 20 L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G-~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~-- 96 (258)
T COG3638 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG-EILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRL-- 96 (258)
T ss_pred eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcc-eEEecccchhccchHHHHHHHHhceeEeccCCccccc--
Confidence 3333445679999999999999999999999999999999 554322111 122245699999999988877
Q ss_pred hhhhHHHHHHhcc--------ccCCc-HHHHHHHHHcC-CceEEecchhhHHHH---HcCCcceeEEEEcCCChHHHHHH
Q 015825 196 DGKFLEFASVHGN--------LYGTS-VEAVEAVADAG-KRCILDIDVQGARSV---RASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 196 ~~~~~E~~~~~~~--------~~g~~-~~~i~~~~~~g-~~~vldld~~g~~~l---~~~~~~~~~ili~~P~lllLDEp 262 (399)
++++|+..+.. +++.. +++...++..- ..-+++...+....+ ++|++..+.+|+.+|++.+.|||
T Consensus 97 --sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEP 174 (258)
T COG3638 97 --SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEP 174 (258)
T ss_pred --HHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCc
Confidence 88888754322 12222 33333333221 111111111111112 45667777899999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
++++||.+.+.+++.|+...++. ..|+|+.-|+++-|.+.++|++.+..|+++..+++.+
T Consensus 175 vasLDp~~a~~Vm~~l~~in~~~-------g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 175 VASLDPESAKKVMDILKDINQED-------GITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred ccccChhhHHHHHHHHHHHHHHc-------CCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhh
Confidence 99999999999999999987653 4488999999999999999999999999999998765
No 57
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.9e-21 Score=182.82 Aligned_cols=197 Identities=15% Similarity=0.091 Sum_probs=137.1
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHHh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
....+....+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++.+|+.+
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-- 92 (235)
T cd03261 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG-EVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL-- 92 (235)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccChhhHHHHhcceEEEccCcccCCCC--
Confidence 3334455679999999999999999999999999999888 5543221110 11234689999998777654
Q ss_pred hhhhHHHHHHhcccc-CCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 196 DGKFLEFASVHGNLY-GTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~-g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+....+ +..... +.+.++. +.....+-.+..+....++++..+.+++.+|++++||||++++|+.
T Consensus 93 --tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 170 (235)
T cd03261 93 --TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170 (235)
T ss_pred --cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence 6777776542222 222222 2222222 1111122222223334566677778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+++.+.+.++++.++. ..++++++|+++++...+++++.+.+|.+...+++.++.
T Consensus 171 ~~~~l~~~l~~~~~~~-------~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 171 ASGVIDDLIRSLKKEL-------GLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHHHHHHHHHHhc-------CcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 9999999998875431 238899999999999999999999999888777665544
No 58
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.83 E-value=1.4e-19 Score=166.37 Aligned_cols=183 Identities=46% Similarity=0.739 Sum_probs=158.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
.+|++++|+||||||||||++.|++.++ .+...++++||+++..+..+..|.|.+...|..+...+.+.++..+.++.|
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 81 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYY 81 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccc
Confidence 4799999999999999999999999876 455577889999988888888999998888888777777887777778889
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
+.+...+...+..+..+++|+++++...++........+++.+|+...+.+|+..|+..+.+.+++++.....+...
T Consensus 82 ~~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~--- 158 (205)
T PRK00300 82 GTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEIAH--- 158 (205)
T ss_pred cCcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999998888887777788999999999999999999988899999999887665543
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
.+.|+++++|.+++++...+..++...
T Consensus 159 ~~~~d~vi~n~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 159 ASEYDYVIVNDDLDTALEELKAIIRAE 185 (205)
T ss_pred HHhCCEEEECCCHHHHHHHHHHHHHHH
Confidence 245799999999999999999987665
No 59
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.83 E-value=1.8e-21 Score=193.86 Aligned_cols=202 Identities=16% Similarity=0.090 Sum_probs=145.6
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecChHHHHHHHhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+....+.. .......++|+||++.+|+.+
T Consensus 16 isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~---- 90 (354)
T TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEG-EIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHL---- 90 (354)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECccCccccccchhhCCeEEEecCCccCCCC----
Confidence 3345568999999999999999999999999999888 554322111 011234689999998888766
Q ss_pred hhHHHHHHhccccCCc--HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 198 KFLEFASVHGNLYGTS--VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~--~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
++.+++.+....+... ...+.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+++.+
T Consensus 91 tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l 170 (354)
T TIGR02142 91 SVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEI 170 (354)
T ss_pred cHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHH
Confidence 7888877643222111 1122333322 121122222233333456677777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
.+.|+++.++. ..++++++|+++++...+++++.+.+|.+...+++.+++..|....+
T Consensus 171 ~~~L~~l~~~~-------g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 228 (354)
T TIGR02142 171 LPYLERLHAEF-------GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWL 228 (354)
T ss_pred HHHHHHHHHhc-------CCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCcccc
Confidence 99999876432 23889999999999999999999999999988888888887765544
No 60
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.8e-21 Score=180.38 Aligned_cols=189 Identities=15% Similarity=0.151 Sum_probs=140.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee-------cCCC-ccccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH-------TTRA-PRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~-------ttr~-~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
...+++|-|+||+|||||+|+|+|+..|..| .|.. +.+. .-+.+++.+||+||+..+|+++ ++.-|+
T Consensus 23 ~~GvTAlFG~SGsGKTslin~IaGL~rPdeG-~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~----tVrgNL 97 (352)
T COG4148 23 ARGITALFGPSGSGKTSLINMIAGLTRPDEG-RIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY----TVRGNL 97 (352)
T ss_pred CCceEEEecCCCCChhhHHHHHhccCCcccc-EEEECCEEeecccCCcccChhhheeeeEeeccccccce----EEecch
Confidence 3389999999999999999999999999988 4432 1111 1233445699999999999999 888888
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
.|..... ......+.+.- |...+++--|..+....+|++..-.++++.|++++||||++++|.....++.-.++++.
T Consensus 98 ~YG~~~~--~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~ 175 (352)
T COG4148 98 RYGMWKS--MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLR 175 (352)
T ss_pred hhhhccc--chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHH
Confidence 7753321 22222222211 22222222222222233555556669999999999999999999999999999999998
Q ss_pred HHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 283 EEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
++.. .-+++|+|.++|+...+++++.+.+|++...+..++++..|
T Consensus 176 ~e~~-------IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 176 DEIN-------IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred HhcC-------CCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 7753 37899999999999999999999999999999888888776
No 61
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=2.8e-21 Score=182.19 Aligned_cols=202 Identities=14% Similarity=0.145 Sum_probs=138.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
+....+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|++|++.+|+.. ++
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~----tv 91 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSG-TILFGGEDATDVPVQERNVGFVFQHYALFRHM----TV 91 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCCccccceEEEecCCcccCCC----CH
Confidence 33334455569999999999999999999999999999888 5543221110 11124589999997766544 67
Q ss_pred HHHHHHhccccCC----cHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 200 LEFASVHGNLYGT----SVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 200 ~E~~~~~~~~~g~----~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
.+++.+....++. ... .+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~ 171 (239)
T cd03296 92 FDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171 (239)
T ss_pred HHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 7777654322221 111 12222222 11111111122223334566677789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
++.+.+.|.++.++. ..++++++|+++++...+++++.+.+|.++..+++.++...+.
T Consensus 172 ~~~l~~~l~~~~~~~-------~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 229 (239)
T cd03296 172 RKELRRWLRRLHDEL-------HVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPA 229 (239)
T ss_pred HHHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcCCC
Confidence 999999998875431 2388999999999999999999999999888777666655443
No 62
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.3e-21 Score=183.68 Aligned_cols=199 Identities=16% Similarity=0.097 Sum_probs=136.8
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~ 193 (399)
.+..+.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+|+.+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG-SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 344444455679999999999999999999999999999888 5543221111 01134689999998777654
Q ss_pred HhhhhhHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 194 IKDGKFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+....++.... .+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+
T Consensus 98 ----t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~ 173 (233)
T cd03258 98 ----TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDP 173 (233)
T ss_pred ----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCH
Confidence 677776654322332222 22222222 111111222222233345666677799999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
.++..+.+.+.++.++. ..++++++|+++++...+++++.+.+|+++..+++.++.
T Consensus 174 ~~~~~l~~~l~~~~~~~-------~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 174 ETTQSILALLRDINREL-------GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999865431 238899999999998889999999999888776655443
No 63
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.82 E-value=4.1e-21 Score=180.49 Aligned_cols=198 Identities=15% Similarity=0.125 Sum_probs=135.5
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----ccccCCeeEEecChHHHHHHHhhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----AMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
..+.+....+|++++|+||||||||||+++|+|++++..| .+........ .....+++|+||++.+|+.+
T Consensus 16 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~---- 90 (236)
T cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSG-SVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL---- 90 (236)
T ss_pred ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc-eEEECCEECCCCCHHHHHhcCEEEEecccccccCC----
Confidence 3334455669999999999999999999999999999888 5543221111 11124589999998777655
Q ss_pred hhHHHHHHhccccCC----------cHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 198 KFLEFASVHGNLYGT----------SVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~----------~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
++.+++.+....++. ... .+.+.++. +....++-.+..+....+++...+.+++.+|++++||||
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 170 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEP 170 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 677776654322211 111 12222222 111111212222223345666677799999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
++++|+.++..+.+.++++.++ ..++|+++|+++++...+++++.+.+|.+...+++.++...
T Consensus 171 t~~LD~~~~~~l~~~l~~~~~~--------~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 171 AAGLNPEETEELAELIRELRER--------GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred cccCCHHHHHHHHHHHHHHHHC--------CCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 9999999999999999876431 23889999999999999999999999988877766555443
No 64
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3.7e-21 Score=179.07 Aligned_cols=193 Identities=18% Similarity=0.156 Sum_probs=133.0
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
....+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+++.+ ++
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~----tv 90 (220)
T cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG-RATVAGHDVVREPREVRRRIGIVFQDLSVDDEL----TG 90 (220)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEecCcChHHHhhcEEEecCCccccccC----cH
Confidence 3334445568999999999999999999999999999888 554322111 111124589999998766654 66
Q ss_pred HHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 200 LEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
.+++.+....++..... +.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+.+.+
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l 170 (220)
T cd03265 91 WENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 77766543333433222 2222222 111111112222233345666777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCC
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTS 327 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~ 327 (399)
.+.|.++..+. ..++++++|+++++...+++++.+.+|.++..+++
T Consensus 171 ~~~l~~~~~~~-------~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 216 (220)
T cd03265 171 WEYIEKLKEEF-------GMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTP 216 (220)
T ss_pred HHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCCh
Confidence 99998865431 23789999999999999999999999988766544
No 65
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.82 E-value=1.6e-21 Score=192.04 Aligned_cols=195 Identities=15% Similarity=0.132 Sum_probs=143.1
Q ss_pred EEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCcHH
Q 015825 138 ITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVE 215 (399)
Q Consensus 138 l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~~~ 215 (399)
|+||||||||||+++|+|++++..| .+....+... ......++|+||++.+|+.+ ++.+++.+....++....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G-~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~----tv~enl~~~~~~~~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSG-SIMLDGEDVTNVPPHLRHINMVFQSYALFPHM----TVEENVAFGLKMRKVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEEEEecCccccCCC----cHHHHHHHHHhhcCCCHH
Confidence 5899999999999999999999888 5554322111 11234689999998888776 788888775443343332
Q ss_pred H----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 216 A----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 216 ~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
. +.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.|+++.++.
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~----- 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL----- 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-----
Confidence 2 2222222 22222222233333345667777789999999999999999999999999999999876542
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
..++++++|+++++...+++++.+.+|++.+.+++.+++..|....++.+.+
T Consensus 151 --g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 202 (325)
T TIGR01187 151 --GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIG 202 (325)
T ss_pred --CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHHHhcC
Confidence 2389999999999999999999999999999999888888887766666544
No 66
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.82 E-value=3.6e-21 Score=189.90 Aligned_cols=206 Identities=14% Similarity=0.087 Sum_probs=143.6
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecCh--HHHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTER--SVMEKA 193 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~--~lf~~~ 193 (399)
..+.++...+|++++|+|+||||||||+++|+|++++..| .+........ ......++|+||++ .+++.+
T Consensus 37 l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G-~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~ 115 (331)
T PRK15079 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDG-EVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRM 115 (331)
T ss_pred EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCc-EEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCC
Confidence 3344456679999999999999999999999999999888 5544222110 01134699999996 345544
Q ss_pred HhhhhhHHHHHHhcccc--CCcHHHHHHH----HHc-CC-ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 194 IKDGKFLEFASVHGNLY--GTSVEAVEAV----ADA-GK-RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~--g~~~~~i~~~----~~~-g~-~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
++.+++.+....+ +.+.....+. ++. ++ ..+++-.+..+....+|+...+.+++.+|+++++|||+++
T Consensus 116 ----tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~ 191 (331)
T PRK15079 116 ----TIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSA 191 (331)
T ss_pred ----CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 6666665432222 2333333222 222 11 0111212222233345666777799999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
+|..++.++.+.|+++.++. ..++++++||++.+...+++++.+..|.++..+++.+++..|......
T Consensus 192 LD~~~~~~i~~lL~~l~~~~-------~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 192 LDVSIQAQVVNLLQQLQREM-------GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CCHHHHHHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCCHHHH
Confidence 99999999999999876542 238999999999999999999999999999988888888777654433
No 67
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.82 E-value=3.7e-21 Score=187.84 Aligned_cols=197 Identities=16% Similarity=0.116 Sum_probs=138.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+..+.++...+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+++.+ +
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~----t 93 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRG-KITVLGEPVPSRARLARVAIGVVPQFDNLDPEF----T 93 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECcccHHHHhhcEEEEeccccCCcCC----c
Confidence 33334455679999999999999999999999999999888 554322111 111234689999998776655 7
Q ss_pred hHHHHHHhccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++....... +.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+++.
T Consensus 94 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 173 (303)
T TIGR01288 94 VRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 173 (303)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 77777654444444332222 22221 11111111122223334566777789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+.+.++++.++ ..++++++|+++++...+++++.+.+|.++..+++.++.
T Consensus 174 l~~~l~~~~~~--------g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 174 IWERLRSLLAR--------GKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI 223 (303)
T ss_pred HHHHHHHHHhC--------CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999886431 238899999999999999999999999988877766554
No 68
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.81 E-value=6.3e-21 Score=178.77 Aligned_cols=198 Identities=14% Similarity=0.101 Sum_probs=135.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-----ccccccCCeeEEecChHHHHHHHhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
+..+.+....+|++++|+||||||||||+++|+|+.++..| .+...... ........++|+||++.+|+.+
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--- 90 (232)
T cd03218 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG-KILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL--- 90 (232)
T ss_pred eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccCCHhHHHhccEEEecCCccccccC---
Confidence 33334455669999999999999999999999999999888 55432211 1111124589999998777655
Q ss_pred hhhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 197 GKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
++.+++.+....++..... +.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.++
T Consensus 91 -tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 169 (232)
T cd03218 91 -TVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAV 169 (232)
T ss_pred -cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence 6777776543333332222 2222222 111111112222233345666777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+.+.++++.++ ..++++++|+++++...+++++.+.+|.+...+++.++..
T Consensus 170 ~~~~~~l~~~~~~--------~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 170 QDIQKIIKILKDR--------GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHHHHHHHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999876431 2378899999999999999999999998887666554443
No 69
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.81 E-value=2.5e-21 Score=188.78 Aligned_cols=198 Identities=14% Similarity=0.109 Sum_probs=142.4
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhh
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
..+..+.++...+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+.+
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G-~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~--- 90 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG-SVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM--- 90 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccChHHHHhceEEecCCCCCCCCC---
Confidence 3344444455679999999999999999999999999999999 554322111 111234689999998777765
Q ss_pred hhhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 197 GKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
++.|++.+....++.+... +.+.++. +.....+-.+..+....++++..+.+++.+|++++||||++++|+.++
T Consensus 91 -tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~ 169 (301)
T TIGR03522 91 -YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQL 169 (301)
T ss_pred -cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 7888887766666655332 2223322 221111111222223345667777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+.+++.++++.+ ..++++++|+++++...+++++.+.+|.+...+++.++.
T Consensus 170 ~~l~~~l~~~~~---------~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 170 VEIRNVIKNIGK---------DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS 220 (301)
T ss_pred HHHHHHHHHhcC---------CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999998887532 138899999999999999999999999999888766554
No 70
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1e-20 Score=175.23 Aligned_cols=190 Identities=15% Similarity=0.161 Sum_probs=129.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
+..+.++...+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++.+++.+ ++
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~----tv 89 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSG-EILIDGRDVTGVPPERRNIGMVFQDYALFPHL----TV 89 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEcCcCchhhccEEEEcCchhhccCC----cH
Confidence 33334455679999999999999999999999999999888 5543221110 11124589999998766554 67
Q ss_pred HHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 200 LEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
.+++.+....++..... +.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.++..+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l 169 (213)
T cd03259 90 AENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169 (213)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 77766543323322222 2222222 111111111222233345667777799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
.+.+.++.++. ..++++++|+++++...+++++.+.+|.+..
T Consensus 170 ~~~l~~~~~~~-------~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 170 REELKELQREL-------GITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred HHHHHHHHHHc-------CCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99998865421 2378999999999999999999998887654
No 71
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.9e-21 Score=186.28 Aligned_cols=197 Identities=15% Similarity=0.100 Sum_probs=139.4
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc------ccccCCeeEEecChHH-HHHHHhhh
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR------AMEKDGVHYHFTERSV-MEKAIKDG 197 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~------~~~~~~i~yvfq~~~l-f~~~~~~~ 197 (399)
+.++...+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++.. +...
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~---- 99 (287)
T PRK13637 25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG-KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE---- 99 (287)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-EEEECCEECCCcCccHHHHhhceEEEecCchhccccc----
Confidence 33445569999999999999999999999999999888 5543221111 1123468999998642 2222
Q ss_pred hhHHHHHHhccccCCcHHHHH----HHHHc-CCc--eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 198 KFLEFASVHGNLYGTSVEAVE----AVADA-GKR--CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~--~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
++.+++.+....++....... +.++. ++. -..+-.+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~ 179 (287)
T PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179 (287)
T ss_pred cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence 777887765444444443332 22322 221 11222222333345666777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+..+.+.++++.++. ..++++++|+++++...+++++.+.+|.++..+++.+++..
T Consensus 180 ~~~l~~~l~~l~~~~-------g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 180 RDEILNKIKELHKEY-------NMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999876432 23889999999999999999999999999888877766543
No 72
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.81 E-value=6.4e-21 Score=169.16 Aligned_cols=184 Identities=12% Similarity=0.095 Sum_probs=140.1
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee-------cCCCccccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH-------TTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~-------ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
+...+|+++.++|||||||||++++|.+...|..| .+.. ......+..++.+|++||++.+.+++ ++.
T Consensus 23 ~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G-~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~----tvy 97 (223)
T COG2884 23 FHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRG-KILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDR----TVY 97 (223)
T ss_pred EeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCc-eEEECCeecccccccccchhhheeeeEeeeccccccc----hHh
Confidence 44569999999999999999999999999999888 4432 22222334456799999999887776 999
Q ss_pred HHHHHhccccCCcHHHHHHHHHcCCceE-----EecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEAVEAVADAGKRCI-----LDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i~~~~~~g~~~v-----ldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
||+.|.....|.+...+++.+.+.+..+ ...-|..+....+|+...+.+++..|++++.|||+.++||++..+++
T Consensus 98 eNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im 177 (223)
T COG2884 98 ENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM 177 (223)
T ss_pred hhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH
Confidence 9999999999999888887665432111 11112222223456667777999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeec
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNH 324 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~ 324 (399)
+.+.++... ..|+++.|||.+-+-..-.+++.+++|+++..
T Consensus 178 ~lfeeinr~--------GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 178 RLFEEINRL--------GTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred HHHHHHhhc--------CcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 999887642 44888999998777666667788888877654
No 73
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=9.1e-21 Score=175.13 Aligned_cols=186 Identities=17% Similarity=0.147 Sum_probs=128.6
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
+.+....+|++++|+||||||||||+++|+|+.++..| .+..............++|+||++.+++.+ ++.+++.
T Consensus 18 ~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~----tv~e~l~ 92 (210)
T cd03269 18 DISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSG-EVLFDGKPLDIAARNRIGYLPEERGLYPKM----KVIDQLV 92 (210)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCCchhHHHHccEEEeccCCcCCcCC----cHHHHHH
Confidence 33445569999999999999999999999999999888 555433222112234689999998766654 6777776
Q ss_pred HhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 205 VHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 205 ~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
+....++..... +.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~ 172 (210)
T cd03269 93 YLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIR 172 (210)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 544334433222 2222222 11111111111222234556667778999999999999999999999999999988
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
++..+ ..++++++|+++++...+++++.+.+|.+..
T Consensus 173 ~~~~~--------~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 173 ELARA--------GKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred HHHHC--------CCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 76421 2388999999999988899999998887654
No 74
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.81 E-value=9.3e-21 Score=174.81 Aligned_cols=188 Identities=11% Similarity=0.099 Sum_probs=131.5
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
....+....+|++++|+||||||||||+++|+|+.++..| .+........ ......++|+||++.+++.+ ++.
T Consensus 16 l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~ 90 (208)
T cd03268 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG-EITFDGKSYQKNIEALRRIGALIEAPGFYPNL----TAR 90 (208)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCCcccchHHHHhhEEEecCCCccCccC----cHH
Confidence 3334445569999999999999999999999999999888 5654332211 11134589999997766655 777
Q ss_pred HHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 201 EFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
+++.+....++.....+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.+.
T Consensus 91 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 170 (208)
T cd03268 91 ENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELIL 170 (208)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHH
Confidence 87766543333333334433332 11111111111222234566677789999999999999999999999999999988
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
++.++ ..++++++|+++++...+++++.+.+|.++.
T Consensus 171 ~~~~~--------~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 171 SLRDQ--------GITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred HHHHC--------CCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 76531 2388999999999998999999999887654
No 75
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.81 E-value=1.1e-20 Score=175.53 Aligned_cols=186 Identities=17% Similarity=0.132 Sum_probs=127.0
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--------ccccCCeeEEecChHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--------AMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--------~~~~~~i~yvfq~~~lf~~~ 193 (399)
+..+.++...+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+|+.+
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG-EVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL 97 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCce-eEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCC
Confidence 33334455679999999999999999999999999999888 5543221111 01124589999998776654
Q ss_pred HhhhhhHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 194 IKDGKFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+....++.... .+.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+
T Consensus 98 ----tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~ 173 (218)
T cd03255 98 ----TALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDS 173 (218)
T ss_pred ----cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCH
Confidence 677777664333333222 22222222 111111222222333356667777899999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
.+++.+.+.+.++.++. ..++++++|+++++. .+++++.+.+|.
T Consensus 174 ~~~~~l~~~l~~~~~~~-------~~tii~~sH~~~~~~-~~d~v~~l~~G~ 217 (218)
T cd03255 174 ETGKEVMELLRELNKEA-------GTTIVVVTHDPELAE-YADRIIELRDGK 217 (218)
T ss_pred HHHHHHHHHHHHHHHhc-------CCeEEEEECCHHHHh-hhcEEEEeeCCc
Confidence 99999999999865421 238899999999875 889888887764
No 76
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.81 E-value=6.9e-21 Score=176.67 Aligned_cols=185 Identities=10% Similarity=0.092 Sum_probs=127.8
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHHh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
....+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+|+.+
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-- 95 (216)
T TIGR00960 19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRG-KIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR-- 95 (216)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEehhhcChhHHHHHHHhceEEecCccccccc--
Confidence 3334455569999999999999999999999999999888 5544322110 01134689999998777655
Q ss_pred hhhhHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 196 DGKFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
++.+++.+....++.... .+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 96 --tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~ 173 (216)
T TIGR00960 96 --TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPEL 173 (216)
T ss_pred --cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence 777777654333332222 22222322 11111222222333345666777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
++.+.+.+.++.++ ..++++++|+++.+...+++++.+.+|.
T Consensus 174 ~~~l~~~l~~~~~~--------~~tii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 174 SRDIMRLFEEFNRR--------GTTVLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred HHHHHHHHHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999876431 2388999999999988889988887764
No 77
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.81 E-value=1e-20 Score=176.93 Aligned_cols=188 Identities=15% Similarity=0.105 Sum_probs=131.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc-----CCcccceeeecCCCc------cccccCCeeEEecChHHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEF-----PSMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~-----~~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
.+....+|++++|+||||||||||+++|+|+. ++..| .+....... .......++|+||++.+| .+
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~- 95 (227)
T cd03260 19 ISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG-EVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PG- 95 (227)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCe-EEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cc-
Confidence 34455699999999999999999999999999 88888 554322211 111234689999998766 44
Q ss_pred hhhhhHHHHHHhccccCCcH-----HHHHHHHHc-CCceEEecc--hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 195 KDGKFLEFASVHGNLYGTSV-----EAVEAVADA-GKRCILDID--VQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~-----~~i~~~~~~-g~~~vldld--~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
++.+++.+....++... ..+.+.++. +....++-. +..+....+++...+.+++.+|++++||||++++
T Consensus 96 ---tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 172 (227)
T cd03260 96 ---SIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172 (227)
T ss_pred ---cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 77777765433333211 122233322 111111111 1223333456666777999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
|+.+++.+.+.|+++.++ .++++++|+++++...+++++.+.+|.++..+++.
T Consensus 173 D~~~~~~l~~~l~~~~~~---------~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 173 DPISTAKIEELIAELKKE---------YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred CHHHHHHHHHHHHHHhhC---------cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcc
Confidence 999999999999986532 28899999999999999999999999888766544
No 78
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.81 E-value=6.2e-21 Score=192.20 Aligned_cols=210 Identities=12% Similarity=0.043 Sum_probs=146.3
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~ 192 (399)
++...+..+.++...+|++++|+||||||||||+++|+|+++|..| .+....+... ....+.++|++|++.+++.
T Consensus 13 y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG-~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~ 91 (402)
T PRK09536 13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAG-TVLVAGDDVEALSARAASRRVASVPQDTSLSFE 91 (402)
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCc-EEEECCEEcCcCCHHHHhcceEEEccCCCCCCC
Confidence 3333444444455679999999999999999999999999999888 5543322211 1123458999999877655
Q ss_pred HHhhhhhHHHHHHhcccc----C-CcH---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 193 AIKDGKFLEFASVHGNLY----G-TSV---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~----g-~~~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
+ ++.+++.+....| + ... +.+.+.++. +...+.+-....+....+|+...+.+|+.+|++++||||+
T Consensus 92 ~----tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPt 167 (402)
T PRK09536 92 F----DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPT 167 (402)
T ss_pred C----CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 5 7777776543211 1 111 223333322 2211222222223333566777778999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
+++|+.++.++++.|+++.++ ..++++++|+++++.+.+++++.+.+|+++..+++++++..+....+
T Consensus 168 sgLD~~~~~~l~~lL~~l~~~--------g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~~l~~~ 235 (402)
T PRK09536 168 ASLDINHQVRTLELVRRLVDD--------GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAA 235 (402)
T ss_pred ccCCHHHHHHHHHHHHHHHhc--------CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcHHHHHH
Confidence 999999999999999987531 23889999999999999999999999999998988877766543333
No 79
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=7.3e-21 Score=184.61 Aligned_cols=196 Identities=15% Similarity=0.108 Sum_probs=138.5
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecChH--HHHHHHh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTERS--VMEKAIK 195 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~--lf~~~~~ 195 (399)
.+....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++. +|+ .
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~-- 101 (290)
T PRK13634 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG-TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE-E-- 101 (290)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh-h--
Confidence 3345569999999999999999999999999999888 554432211 1112346899999863 342 3
Q ss_pred hhhhHHHHHHhccccCCcHHHHHHH----HHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 196 DGKFLEFASVHGNLYGTSVEAVEAV----ADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~i~~~----~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+....++.+.....+. ++. ++. .+.+-.+..+....+++...+.+++.+|++++||||++++|+.
T Consensus 102 --tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~ 179 (290)
T PRK13634 102 --TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179 (290)
T ss_pred --hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 67788776543344443333222 221 111 1122222223333456667777999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+...+.+.|+++.++. ..++++++|+++++...+++++.+.+|+++..+++.+++..+
T Consensus 180 ~~~~l~~~L~~l~~~~-------g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 237 (290)
T PRK13634 180 GRKEMMEMFYKLHKEK-------GLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237 (290)
T ss_pred HHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCH
Confidence 9999999998875432 238899999999999999999999999998888777665543
No 80
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=4.3e-21 Score=175.51 Aligned_cols=203 Identities=15% Similarity=0.128 Sum_probs=148.9
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee-----cCCCccccccCCeeEEecChHHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH-----TTRAPRAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~-----ttr~~~~~~~~~i~yvfq~~~lf~ 191 (399)
||.-.+..+.+....+|++++++|+||+|||||+++|+|+.++..| .|.. |..++...-+.|++|+||....|+
T Consensus 13 YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G-~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 13 YGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSG-RIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred ccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-eEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 4443344445556679999999999999999999999999999888 5543 334444555678999999999999
Q ss_pred HHHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHH----------HcCCcceeEEEEcCCChHHHHH
Q 015825 192 KAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSV----------RASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l----------~~~~~~~~~ili~~P~lllLDE 261 (399)
.+ ++.||+.......... .... .....++++.|.-.... .+|......+|+..|++++|||
T Consensus 92 ~L----TVeENL~~g~~~~~~~-~~~~----~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDE 162 (237)
T COG0410 92 RL----TVEENLLLGAYARRDK-EAQE----RDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDE 162 (237)
T ss_pred hC----cHHHHHhhhhhccccc-cccc----ccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecC
Confidence 99 9999988654332210 0000 00111222333221111 2333445569999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~ 336 (399)
|+.++.|.-.+++.+.+++++++. ..++++|.++...|++.+|+.+++..|+++..+++.++...|..
T Consensus 163 Ps~GLaP~iv~~I~~~i~~l~~~~-------g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v 230 (237)
T COG0410 163 PSEGLAPKIVEEIFEAIKELRKEG-------GMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDV 230 (237)
T ss_pred CccCcCHHHHHHHHHHHHHHHHcC-------CcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHH
Confidence 999999988888888888877542 24889999999999999999999999999999998888877653
No 81
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.80 E-value=1.5e-20 Score=175.38 Aligned_cols=190 Identities=14% Similarity=0.093 Sum_probs=133.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
.+....+|++++|+||||||||||+++|+|.+++..| .+..............++|+||++.+++.+ ++.++..+
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~----t~~~~~~~ 93 (223)
T TIGR03740 19 ISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG-EIIFDGHPWTRKDLHKIGSLIESPPLYENL----TARENLKV 93 (223)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEeccccccccEEEEcCCCCccccC----CHHHHHHH
Confidence 3445569999999999999999999999999999888 554322221111123589999987666544 67777665
Q ss_pred hccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~ 284 (399)
....++.....+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.|.++.++
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~ 173 (223)
T TIGR03740 94 HTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173 (223)
T ss_pred HHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHC
Confidence 433333333444444432 1111111112222223455667778999999999999999999999999999999886431
Q ss_pred HHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 285 IKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
..++++++|+++++...+++++.+.+|.+...+++.
T Consensus 174 --------~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 174 --------GITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred --------CCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 237899999999999999999999999888766543
No 82
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.80 E-value=8.8e-21 Score=176.39 Aligned_cols=193 Identities=14% Similarity=0.090 Sum_probs=132.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+++.. +
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~----t 91 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG-TAYINGYSIRTDRKAARQSLGYCPQFDALFDEL----T 91 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccchHHHhhhEEEecCcCCccccC----C
Confidence 33334455569999999999999999999999999999888 554322111 111234589999997766554 6
Q ss_pred hHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++.+... +.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+.+.
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 171 (220)
T cd03263 92 VREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRA 171 (220)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHH
Confidence 777776654434433322 2222222 11111111111222234556667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
+.+.|+++.+ ..++++++|+++.+...+++++.+.+|.++..+++.
T Consensus 172 l~~~l~~~~~---------~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 217 (220)
T cd03263 172 IWDLILEVRK---------GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQ 217 (220)
T ss_pred HHHHHHHHhc---------CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHH
Confidence 9998887542 138899999999998889999999999887766543
No 83
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.80 E-value=1.2e-20 Score=173.78 Aligned_cols=183 Identities=12% Similarity=0.064 Sum_probs=127.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-cccccCCeeEEecChHH-HHHHHhhhhhHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-RAMEKDGVHYHFTERSV-MEKAIKDGKFLEFA 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-~~~~~~~i~yvfq~~~l-f~~~~~~~~~~E~~ 203 (399)
.+....+|++++|+||||||||||+++|+|+.+|..| .+....... .......++|+||++.. +..+ ++.+++
T Consensus 19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~----tv~e~l 93 (205)
T cd03226 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG-SILLNGKPIKAKERRKSIGYVMQDVDYQLFTD----SVREEL 93 (205)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEhhhHHhhcceEEEecChhhhhhhc----cHHHHH
Confidence 3345568999999999999999999999999999999 554432221 11123458999998642 2233 677777
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
.+....++.....+.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.++++.
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 173 (205)
T cd03226 94 LLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173 (205)
T ss_pred hhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 65433333222334444433 22222222233333345666777779999999999999999999999999999998764
Q ss_pred HHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCee
Q 015825 283 EEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIA 321 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~ 321 (399)
++ ..++++++|+++++...+++++.+.+|.+
T Consensus 174 ~~--------~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 174 AQ--------GKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred HC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 32 23889999999999888999988887754
No 84
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.80 E-value=1.2e-20 Score=175.66 Aligned_cols=193 Identities=15% Similarity=0.139 Sum_probs=131.2
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHhhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
....+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+.+
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~---- 90 (222)
T cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG-SIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL---- 90 (222)
T ss_pred eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC----
Confidence 3334455679999999999999999999999999999888 554322111 111134589999998777655
Q ss_pred hhHHHHHHhccccCC--cHHHHHHHHHcC--CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 198 KFLEFASVHGNLYGT--SVEAVEAVADAG--KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~--~~~~i~~~~~~g--~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
++.+++.+....++. ....+...++.. ....++-.+..+....+++...+.+++.+|++++||||++++|+.+++.
T Consensus 91 t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 170 (222)
T cd03224 91 TVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE 170 (222)
T ss_pred cHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHH
Confidence 677777664333321 111122222210 1001111111122223555666779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
+.+.|+++..+ ..++++++|+++++...+++++.+.+|.+...+++.
T Consensus 171 l~~~l~~~~~~--------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (222)
T cd03224 171 IFEAIRELRDE--------GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAA 217 (222)
T ss_pred HHHHHHHHHHC--------CCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHH
Confidence 99999876431 248899999999999999999999999887665433
No 85
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.5e-20 Score=177.46 Aligned_cols=197 Identities=17% Similarity=0.108 Sum_probs=136.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|++++|+||||||||||+++|+|+.+|..| .+....... .......++|+||++.+|+ . ++.+
T Consensus 22 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~----tv~e 95 (241)
T PRK14250 22 ISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG-SILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-G----TVKD 95 (241)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEhhhcChHHhhhcEEEEecCchhch-h----hHHH
Confidence 3445568999999999999999999999999999888 554322111 1111346899999987664 2 6667
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
++.+....++.....+.+.++. +.. ...+..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.|+
T Consensus 96 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 175 (241)
T PRK14250 96 NIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175 (241)
T ss_pred HHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 7654322222222233333322 110 01111111122234555666778999999999999999999999999999998
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
++.++. ..++++++|+++++...+++++.+.+|.++..+++.+++..|.
T Consensus 176 ~~~~~~-------g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 224 (241)
T PRK14250 176 KLKNKM-------NLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQ 224 (241)
T ss_pred HHHHhC-------CCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCC
Confidence 865421 2388999999999998999999999999988888777776654
No 86
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=5.9e-21 Score=186.44 Aligned_cols=195 Identities=15% Similarity=0.080 Sum_probs=138.0
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----------------------------ccccccC
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----------------------------PRAMEKD 178 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----------------------------~~~~~~~ 178 (399)
+....+|++++|+||||||||||+++|+|++++..| .+...... .......
T Consensus 27 sl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (305)
T PRK13651 27 SVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG-TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRR 105 (305)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEEeceecccccccccccccccccccccccccccchHHHHHh
Confidence 344569999999999999999999999999999888 44331100 0011234
Q ss_pred CeeEEecChH-HHHHHHhhhhhHHHHHHhccccCCcHHHHHHHHHc-----CCc-eEEecchhhHHHHHcCCcceeEEEE
Q 015825 179 GVHYHFTERS-VMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADA-----GKR-CILDIDVQGARSVRASPLDAIFIFI 251 (399)
Q Consensus 179 ~i~yvfq~~~-lf~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-----g~~-~vldld~~g~~~l~~~~~~~~~ili 251 (399)
.++|+||++. .+... ++.+++.+....++.+.+...+.+.+ ++. ...+-.+..+....+++...+.+++
T Consensus 106 ~ig~v~Q~~~~~l~~~----tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~ 181 (305)
T PRK13651 106 RVGVVFQFAEYQLFEQ----TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILA 181 (305)
T ss_pred ceEEEeeCcccccccc----cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHH
Confidence 6899999853 22222 77788776544455554433322221 111 1122222223333456677778999
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
.+|++++||||++++|+.+++.+.+.|+++.++ ..++++++||++.+...+++++.+.+|+++..+++.+++
T Consensus 182 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--------g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 182 MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ--------GKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--------CCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999886531 348899999999999999999999999999888877766
Q ss_pred CCC
Q 015825 332 DLP 334 (399)
Q Consensus 332 ~~p 334 (399)
..+
T Consensus 254 ~~~ 256 (305)
T PRK13651 254 SDN 256 (305)
T ss_pred cCH
Confidence 543
No 87
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2.1e-20 Score=176.55 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=136.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+.+ ++.+
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~e 94 (242)
T cd03295 20 LNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSG-EIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM----TVEE 94 (242)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCeEcCcCChHHhhcceEEEccCccccCCC----cHHH
Confidence 3455569999999999999999999999999999888 554322111 111134589999998776554 7777
Q ss_pred HHHHhccccCCcHH----HHHHHHHc-CCce--EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 202 FASVHGNLYGTSVE----AVEAVADA-GKRC--ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 202 ~~~~~~~~~g~~~~----~i~~~~~~-g~~~--vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
++.+....++.... .+.+.++. +... ..+-.+..+....+++...+.+++.+|++++||||++++|+.+++.+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 174 (242)
T cd03295 95 NIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174 (242)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 77654333332222 22222322 1110 11111112222345666777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
.+.|.++..+. ..++|+++|+++++...+++++.+.+|.++..+++.++...+
T Consensus 175 ~~~L~~~~~~~-------g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 227 (242)
T cd03295 175 QEEFKRLQQEL-------GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227 (242)
T ss_pred HHHHHHHHHHc-------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCC
Confidence 99999875421 238899999999999999999999999988777665554443
No 88
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.3e-20 Score=177.55 Aligned_cols=196 Identities=16% Similarity=0.133 Sum_probs=133.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+.....+.. ......++|+||+..+|+.+
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~- 93 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSG-SVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL- 93 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEEECCEeccccCHhHHHHHHhccEEEcccCcccccC-
Confidence 33334455679999999999999999999999999999888 5543222111 11234689999997776654
Q ss_pred hhhhhHHHHHHhcc--------ccCC-c---HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 195 KDGKFLEFASVHGN--------LYGT-S---VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 195 ~~~~~~E~~~~~~~--------~~g~-~---~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
++.+++.+... .++. . .+.+.+.++. +.....+..+..+....+++...+.+++.+|++++|||
T Consensus 94 ---tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 170 (241)
T cd03256 94 ---SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE 170 (241)
T ss_pred ---cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 66676654321 0111 1 1122222222 11111111222223334566667779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
|++++|+.+++.+.+.|+++.++. ..++++++|+++++...+++++.+.+|.++..+++.+
T Consensus 171 Pt~~LD~~~~~~l~~~l~~~~~~~-------~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (241)
T cd03256 171 PVASLDPASSRQVMDLLKRINREE-------GITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE 231 (241)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHH
Confidence 999999999999999999865431 2388999999999998999999999998887766554
No 89
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.80 E-value=1.9e-20 Score=173.23 Aligned_cols=187 Identities=13% Similarity=0.107 Sum_probs=127.5
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+++.. ++.+++
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~~~l 93 (213)
T cd03301 19 LNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSG-RIYIGGRDVTDLPPKDRDIAMVFQNYALYPHM----TVYDNI 93 (213)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCCcccceEEEEecChhhccCC----CHHHHH
Confidence 3445569999999999999999999999999999888 5543221110 01123589999997766544 677777
Q ss_pred HHhccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
.+....++....... +.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 173 (213)
T cd03301 94 AFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAEL 173 (213)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 654333333322222 22221 1111111111122223455666677899999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeec
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNH 324 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~ 324 (399)
+++..+. ..++++++|+++++...+++++.+.+|.++..
T Consensus 174 ~~~~~~~-------~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 174 KRLQQRL-------GTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred HHHHHHc-------CCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 8875431 23889999999999988999999988877643
No 90
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.3e-20 Score=175.48 Aligned_cols=191 Identities=15% Similarity=0.116 Sum_probs=130.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
+..+.+....+|++++|+||||||||||+++|+|+.++..| .+......... ....++|+||.+.+|+.+ ++.+
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~----tv~e 92 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG-EVLVDGEPVTG-PGPDRGYVFQQDALLPWL----TVLD 92 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECcc-ccCcEEEEecccccccCC----CHHH
Confidence 44444455679999999999999999999999999999888 55543322111 124589999987766544 6777
Q ss_pred HHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHH
Q 015825 202 FASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (399)
Q Consensus 202 ~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~ 276 (399)
++.+....++.... .+.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~ 172 (220)
T cd03293 93 NVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQE 172 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHH
Confidence 77654333332222 22222222 11111111112222334566667779999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc--CCeeeecC
Q 015825 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD--GSIATNHQ 325 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~--~~~~~~~~ 325 (399)
.++++.++. ..++++++|+++++...+++++.+. +|+++...
T Consensus 173 ~l~~~~~~~-------~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~ 216 (220)
T cd03293 173 ELLDIWRET-------GKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEV 216 (220)
T ss_pred HHHHHHHHc-------CCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEE
Confidence 998864331 2388999999999988899999888 67776543
No 91
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.80 E-value=1.4e-20 Score=178.34 Aligned_cols=198 Identities=14% Similarity=0.105 Sum_probs=136.5
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc-----ccceeeecCCCc------cccccCCeeEEecChHHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~-----~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
.+....+|++++|+||||||||||+++|+|+++|. .| .+....... .......++|+||++.+|+ .
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~- 96 (247)
T TIGR00972 20 INLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEG-KVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-M- 96 (247)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCce-EEEECCEEccccccchHHHHhheEEEecCcccCC-C-
Confidence 33455699999999999999999999999999886 78 554322111 1112346899999977665 4
Q ss_pred hhhhhHHHHHHhccccC-CcHHH----HHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 195 KDGKFLEFASVHGNLYG-TSVEA----VEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g-~~~~~----i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
++.+++.+....++ ..... +...++. +.. ..++-.+..+....+++...+.+++.+|++++||||++
T Consensus 97 ---tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 173 (247)
T TIGR00972 97 ---SIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173 (247)
T ss_pred ---CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 66777665432222 12222 2222222 221 11111112222234556667779999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
++|+.++..+.+.|+++.++ .++++++|+++++...+++++.+.+|.++..+++.++...|....
T Consensus 174 ~LD~~~~~~l~~~l~~~~~~---------~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 238 (247)
T TIGR00972 174 ALDPIATGKIEELIQELKKK---------YTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPKEKR 238 (247)
T ss_pred cCCHHHHHHHHHHHHHHHhc---------CeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChH
Confidence 99999999999999886431 388999999999999999999999999988887777766554433
No 92
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=99.80 E-value=1.1e-18 Score=174.71 Aligned_cols=185 Identities=37% Similarity=0.638 Sum_probs=163.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
.+.++++|+|++|+|...|-++|....+..++..++||||+++..+.+|..|+|.+...|...+..+.|+|+.+|.+++|
T Consensus 338 ~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlY 417 (542)
T KOG0609|consen 338 FRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLY 417 (542)
T ss_pred cccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCceecCcchhccc
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH-hCC------CCcHHHHHHHHHHHHH
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR-ARG------TETEDQILKRLRNAKE 283 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~-~lD------~~~~e~i~~~L~~~~~ 283 (399)
|++.+.++..+..|+.|++|+.|+.++.+|...+.++++|+.+|++..+.+--. ... ..+.+++++.+.+...
T Consensus 418 GTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d~~Lq~i~~eS~~ 497 (542)
T KOG0609|consen 418 GTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTDEDLQEIIDESAR 497 (542)
T ss_pred cchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhccccccccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998855322 221 3466778777776543
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
|+. .+.+.||.+|+|.|++.++..+..++..-
T Consensus 498 -ie~-~yghyfD~iIvN~dld~t~~eL~~~iekl 529 (542)
T KOG0609|consen 498 -IEQ-QYGHYFDLIIVNSDLDKTFRELKTAIEKL 529 (542)
T ss_pred -HHH-HhhhheeEEEEcCcHHHHHHHHHHHHHHh
Confidence 332 24679999999999999999998876543
No 93
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.6e-20 Score=166.16 Aligned_cols=220 Identities=14% Similarity=0.105 Sum_probs=154.3
Q ss_pred HHHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecC
Q 015825 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTE 186 (399)
Q Consensus 111 ~~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~ 186 (399)
+++.+.+|.+++.-..+....+|+++.|+||||||||||+.+++++.+...| .+....... .....+.++.+-|.
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G-~i~i~g~~~~~~~s~~LAk~lSILkQ~ 83 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSG-EITIDGLELTSTPSKELAKKLSILKQE 83 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCc-eEEEeeeecccCChHHHHHHHHHHHhh
Confidence 4566889988888777777789999999999999999999999999999998 655322111 11111123333333
Q ss_pred hHHHHHHHhhhhhHHHHHHhcccc--CCcHHHHHHHHHcCC--ceEEecchhhHHH---HHcCCcceeEEEEcCCChHHH
Q 015825 187 RSVMEKAIKDGKFLEFASVHGNLY--GTSVEAVEAVADAGK--RCILDIDVQGARS---VRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 187 ~~lf~~~~~~~~~~E~~~~~~~~~--g~~~~~i~~~~~~g~--~~vldld~~g~~~---l~~~~~~~~~ili~~P~lllL 259 (399)
.....++ ++.+.+.|+..-| |.+..+-+..+++.. ..+.++...-+.. .++|+...+.+++.+.+..+|
T Consensus 84 N~i~~rl----TV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlL 159 (252)
T COG4604 84 NHINSRL----TVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLL 159 (252)
T ss_pred chhhhee----EHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEe
Confidence 3222222 6666666654322 333232222232211 1111221111111 246667777899999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
|||++++|....-++++.++++.+++.. |+|+|-||+..|-..+|+++.+.+|+++.+|+|.+++.....+.+
T Consensus 160 DEPLNNLDmkHsv~iMk~Lrrla~el~K-------tiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~ei 232 (252)
T COG4604 160 DEPLNNLDMKHSVQIMKILRRLADELGK-------TIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEI 232 (252)
T ss_pred cCcccccchHHHHHHHHHHHHHHHHhCC-------eEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHHHH
Confidence 9999999999999999999999988866 899999999999999999999999999999999988877655555
Q ss_pred hcc
Q 015825 340 SKV 342 (399)
Q Consensus 340 ~~~ 342 (399)
+.+
T Consensus 233 ydm 235 (252)
T COG4604 233 YDM 235 (252)
T ss_pred hcC
Confidence 543
No 94
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.1e-20 Score=183.29 Aligned_cols=193 Identities=13% Similarity=0.093 Sum_probs=137.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecCh--HHHHHHHh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTER--SVMEKAIK 195 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~--~lf~~~~~ 195 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+.....+. .......++|+||++ .+|. .
T Consensus 25 vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~-- 100 (288)
T PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG-KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-E-- 100 (288)
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCc-EEEECCEECccccccccHHHHHhhEEEEecCcchhccc-c--
Confidence 3345569999999999999999999999999999989 554422211 111234689999986 3332 2
Q ss_pred hhhhHHHHHHhccccCCcHHHHHHHHHc-----CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 196 DGKFLEFASVHGNLYGTSVEAVEAVADA-----GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~i~~~~~~-----g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+....++.+.......+.+ ++. .+.+-.+..+....+++...+.+|+.+|++++||||++++|+.
T Consensus 101 --tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~ 178 (288)
T PRK13643 101 --TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 (288)
T ss_pred --hHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence 67787776544445444433322222 111 1122222223333456667778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
++..+.+.+.+++++ ..++++++|+++++...+++++.+.+|.++..+++.+++.
T Consensus 179 ~~~~l~~~l~~l~~~--------g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 179 ARIEMMQLFESIHQS--------GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHHHHHHHHHHC--------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 999999999876532 2389999999999999999999999999998888776654
No 95
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.80 E-value=1.3e-20 Score=175.04 Aligned_cols=189 Identities=15% Similarity=0.119 Sum_probs=130.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+.+ +
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~----t 94 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG-FATVDGFDVVKEPAEARRRLGFVSDSTGLYDRL----T 94 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEEECCEEcccCHHHHHhhEEEecCCcccCcCC----C
Confidence 33334455568999999999999999999999999999888 554322111 111234689999998776655 6
Q ss_pred hHHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++...... .+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+.+.
T Consensus 95 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~ 174 (218)
T cd03266 95 ARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174 (218)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHH
Confidence 7777766444344333222 222222 11111111111122234566677779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+.+.|.++.++ ..++|+++|+++++...+++++.+.+|.++.
T Consensus 175 l~~~l~~~~~~--------~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 175 LREFIRQLRAL--------GKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred HHHHHHHHHHC--------CCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 99999886431 3489999999999999999999998887654
No 96
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2e-20 Score=172.99 Aligned_cols=183 Identities=16% Similarity=0.093 Sum_probs=126.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc---ccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
.+....+| +++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+|+.+ ++.++
T Consensus 19 vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~~~ 92 (211)
T cd03264 19 VSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSG-TIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNF----TVREF 92 (211)
T ss_pred eeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCCccccchHHHHhheEEecCCCcccccC----CHHHH
Confidence 33445578 9999999999999999999999999888 5554322211 11134589999998777654 67777
Q ss_pred HHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 203 ASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 203 ~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
+.+....++.... .+.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 172 (211)
T cd03264 93 LDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNL 172 (211)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 6654333332222 22222222 111111212222222345666777799999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
++++.+ + .++++++|+++.+...+++++.+.+|.++.
T Consensus 173 l~~~~~--------~-~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 173 LSELGE--------D-RIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred HHHHhC--------C-CEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 987642 1 388999999999988899999998887654
No 97
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.79 E-value=2.8e-20 Score=175.23 Aligned_cols=205 Identities=14% Similarity=0.145 Sum_probs=140.9
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
.+....+|++++|+||||||||||+++|+|.+++..| .+.....+.. ......++|+||++.+|+.. ++.+++
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~----t~~enl 93 (237)
T TIGR00968 19 VNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG-RIRLNGQDATRVHARDRKIGFVFQHYALFKHL----TVRDNI 93 (237)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcCcCChhhcCEEEEecChhhccCC----cHHHHH
Confidence 3345569999999999999999999999999999888 4543221111 11234689999998777644 666776
Q ss_pred HHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 204 SVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 204 ~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
.+....++.... .+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|..+++.+.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l 173 (237)
T TIGR00968 94 AFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL 173 (237)
T ss_pred HhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 654333332222 22222222 1111111111122223455566677999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcc
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKV 342 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~ 342 (399)
.++.++. ..++++++|+++++...+++++.+.+|.++..++..+++..+....+..+
T Consensus 174 ~~~~~~~-------~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~~~ 230 (237)
T TIGR00968 174 RKLHDEV-------HVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSF 230 (237)
T ss_pred HHHHHhc-------CCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCCCcHHHHHh
Confidence 9865421 24899999999999999999999999999888877777776655544433
No 98
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.79 E-value=2.3e-20 Score=176.92 Aligned_cols=201 Identities=14% Similarity=0.102 Sum_probs=136.7
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc------------cccccCCeeEEecChHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------------RAMEKDGVHYHFTERSV 189 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~------------~~~~~~~i~yvfq~~~l 189 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (250)
T PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAG-TIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL 96 (250)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEccccccccchhhHHHHhhhhEEEEecCccc
Confidence 33334455669999999999999999999999999998888 554321110 01123468999999776
Q ss_pred HHHHHhhhhhHHHHHHhcc-ccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 190 MEKAIKDGKFLEFASVHGN-LYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~-~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.. ++.+++.+... .++..... +.+.++. +.....+-.+..+....+++...+.+++.+|++++||||+
T Consensus 97 ~~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt 172 (250)
T PRK11264 97 FPHR----TVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPT 172 (250)
T ss_pred CCCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 6544 67777654321 12222222 2222222 1111111122222233456667777999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+++|+.+++.+.+.+.++.++ ..++++++|+++++...+++++.+.+|.++..+++.++...+.
T Consensus 173 ~~LD~~~~~~l~~~l~~~~~~--------~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 236 (250)
T PRK11264 173 SALDPELVGEVLNTIRQLAQE--------KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQ 236 (250)
T ss_pred ccCCHHHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCC
Confidence 999999999999998876431 2388999999999988999999999999887777666655544
No 99
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.79 E-value=2.4e-20 Score=175.83 Aligned_cols=201 Identities=16% Similarity=0.119 Sum_probs=136.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc------ccccCCeeEEecChHHHHHHHh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR------AMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~------~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
+..+.+....+|++++|+||||||||||+++|+|.+++..| .+........ ......++|+||++.+++.+
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-- 92 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG-DLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL-- 92 (240)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCChhHHHHhhceEEEecccccCCCC--
Confidence 33334455569999999999999999999999999999888 5554322111 11134689999987766544
Q ss_pred hhhhHHHHHHhcc-ccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 196 DGKFLEFASVHGN-LYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 196 ~~~~~E~~~~~~~-~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+... .++..... +.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.
T Consensus 93 --tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~ 170 (240)
T PRK09493 93 --TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE 170 (240)
T ss_pred --cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 66676655321 12222222 2222222 1111111122222223455666777999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+++.+.+.+.++.++ ..++++++|+++++...+++++.+.+|.++..+++.+....+.
T Consensus 171 ~~~~l~~~l~~~~~~--------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 228 (240)
T PRK09493 171 LRHEVLKVMQDLAEE--------GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPP 228 (240)
T ss_pred HHHHHHHHHHHHHHc--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCCc
Confidence 999999999886432 2388999999999988899999999999887776665555443
No 100
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.79 E-value=3.2e-20 Score=176.31 Aligned_cols=201 Identities=14% Similarity=0.130 Sum_probs=137.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----------------ccccCCeeEEecChH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----------------AMEKDGVHYHFTERS 188 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----------------~~~~~~i~yvfq~~~ 188 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 97 (252)
T TIGR03005 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEG-QIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFN 97 (252)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcc
Confidence 3445569999999999999999999999999999888 4543221110 011346899999987
Q ss_pred HHHHHHhhhhhHHHHHHhcc-ccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 189 VMEKAIKDGKFLEFASVHGN-LYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 189 lf~~~~~~~~~~E~~~~~~~-~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
+|+.. ++.+++.+... .++..... +.+.++. +....++-.+..+....+++...+.+++.+|++++||||
T Consensus 98 ~~~~~----tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 173 (252)
T TIGR03005 98 LFPHK----TVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173 (252)
T ss_pred cCCCC----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 66554 66777655321 11222222 2222222 111111111222222345566677799999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
++++|+.++..+.+.|+++.++. ..++++++|+++++...+++++.+.+|+++..+++.++...|....
T Consensus 174 ~~~LD~~~~~~l~~~l~~~~~~~-------~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 174 TSALDPELVGEVLNVIRRLASEH-------DLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKEER 242 (252)
T ss_pred cccCCHHHHHHHHHHHHHHHHhc-------CcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCcHH
Confidence 99999999999999998865431 2388999999999989999999999999988777776666654333
No 101
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.8e-20 Score=181.59 Aligned_cols=194 Identities=12% Similarity=0.112 Sum_probs=135.3
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecChH--HHHHHHhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTERS--VMEKAIKD 196 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~--lf~~~~~~ 196 (399)
+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++. +|+ .
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~--- 101 (286)
T PRK13646 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG-TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-D--- 101 (286)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEECccccccchHHHHHhheEEEecChHhccch-h---
Confidence 344568999999999999999999999999999888 554322111 0112346899999863 343 2
Q ss_pred hhhHHHHHHhccccCCcHHHHHH----HHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 197 GKFLEFASVHGNLYGTSVEAVEA----VADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~~~~~i~~----~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
++.+++.+.....+.......+ .++. ++. ...+-.+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 102 -tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~ 180 (286)
T PRK13646 102 -TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS 180 (286)
T ss_pred -hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 6677776643333333333322 2221 111 11111122223334566677779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+..+.+.++++..+. ..++++++|+++++...+++++.+.+|.++..+++.+++..
T Consensus 181 ~~~l~~~l~~l~~~~-------g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 181 KRQVMRLLKSLQTDE-------NKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHHHHHHHHHHHHhC-------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999875431 34899999999999999999999999999888877665543
No 102
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.79 E-value=2.1e-20 Score=175.10 Aligned_cols=197 Identities=14% Similarity=0.098 Sum_probs=134.0
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
+....+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+.+
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--- 90 (230)
T TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG-SIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL--- 90 (230)
T ss_pred EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC---
Confidence 33334455669999999999999999999999999999888 555432111 111134689999998777654
Q ss_pred hhhHHHHHHhccccCCcHH-HHHHHHHcC--CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 197 GKFLEFASVHGNLYGTSVE-AVEAVADAG--KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~~~~-~i~~~~~~g--~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
++.+++.+....++.... ...+.++.. .....+-.+..+....+++...+.+++.+|++++||||++++|+.+++.
T Consensus 91 -tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~ 169 (230)
T TIGR03410 91 -TVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKD 169 (230)
T ss_pred -cHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 667776654333322211 112222110 0011111122222234556667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
+.+.|.++.++. ..++++++|+++++...+++++.+.+|.++..+++.++
T Consensus 170 l~~~l~~~~~~~-------~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 170 IGRVIRRLRAEG-------GMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHHHHHHcC-------CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999998865421 34889999999999988999999999988877765543
No 103
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.8e-20 Score=178.79 Aligned_cols=205 Identities=13% Similarity=0.073 Sum_probs=140.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+....+....+|++++|+||||||||||+++|+|+.++ ..| .+....... .......++|+||++.+|
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 105 (258)
T PRK14268 27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG-KVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF 105 (258)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcce-EEEECCEEcccccchHHHHhhhEEEEecCCccC
Confidence 33334455679999999999999999999999999874 577 454322111 111234689999997766
Q ss_pred HHHHhhhhhHHHHHHhccccCCcHHH----HHHHHHcC-Cc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGTSVEA----VEAVADAG-KR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~~~~~----i~~~~~~g-~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
+ . ++.+++.+....++..... +.+.++.. .. ..++-.+..+....++++..+.+++.+|++++|||
T Consensus 106 ~-~----tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 180 (258)
T PRK14268 106 P-M----SIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180 (258)
T ss_pred c-c----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 5 4 6777776543333333222 22223221 10 00111111222234566677779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
|++++|+.++..+.+.|+++.+ ..++|+++|+++++...+++++.+.+|++...+++.+++..|....+..
T Consensus 181 Pt~~LD~~~~~~l~~~l~~l~~---------~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 251 (258)
T PRK14268 181 PTSALDPISTARIEDLIMNLKK---------DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPREKSTED 251 (258)
T ss_pred CCcccCHHHHHHHHHHHHHHhh---------CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCCHHHHH
Confidence 9999999999999999987632 1388999999999999999999999999988888887777766555443
No 104
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.79 E-value=2.2e-20 Score=176.26 Aligned_cols=195 Identities=15% Similarity=0.120 Sum_probs=132.5
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHHh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
....+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+|+.+
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-- 94 (243)
T TIGR02315 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSG-SILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERL-- 94 (243)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCcc-EEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccc--
Confidence 3334455679999999999999999999999999999888 5543221110 11134589999998777654
Q ss_pred hhhhHHHHHHhccc--------cCC-cH---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 196 DGKFLEFASVHGNL--------YGT-SV---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 196 ~~~~~E~~~~~~~~--------~g~-~~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
++.+++.+.... .+. .. +.+.+.++. +....++-.+..+....+++...+.+++.+|++++||||
T Consensus 95 --tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 172 (243)
T TIGR02315 95 --TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEP 172 (243)
T ss_pred --cHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 667776542111 111 11 122222222 111111111222222345566677799999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
++++|+.+++.+.+.|+++.++. ..++++++|+++.+...+++++.+.+|.++..+++.+
T Consensus 173 t~~LD~~~~~~l~~~l~~~~~~~-------~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (243)
T TIGR02315 173 IASLDPKTSKQVMDYLKRINKED-------GITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSE 232 (243)
T ss_pred cccCCHHHHHHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHH
Confidence 99999999999999998865431 2388999999999988999999999998887776554
No 105
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.79 E-value=4.2e-20 Score=177.35 Aligned_cols=202 Identities=12% Similarity=0.094 Sum_probs=137.8
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~ 193 (399)
.+..+.++...+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||+..+|+.+
T Consensus 21 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 99 (269)
T PRK11831 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHG-EILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM 99 (269)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence 334444455679999999999999999999999999999888 5544321110 01134589999997766544
Q ss_pred HhhhhhHHHHHHhcccc-CCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 194 IKDGKFLEFASVHGNLY-GTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~-g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.+++.+....+ ..... .+...++. +.....+..+..+....+++...+.+++.+|++++||||++++|
T Consensus 100 ----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 175 (269)
T PRK11831 100 ----NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175 (269)
T ss_pred ----CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 6677765532111 11221 12222222 11111111222223334566667779999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.+++.+.+.++++.++. ..++++++|+++++...+++++.+.+|.++..+++.++...+
T Consensus 176 ~~~~~~l~~~l~~~~~~~-------g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 235 (269)
T PRK11831 176 PITMGVLVKLISELNSAL-------GVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235 (269)
T ss_pred HHHHHHHHHHHHHHHHhc-------CcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999998865431 238899999999999999999999999998888777666544
No 106
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.79 E-value=3.2e-20 Score=172.76 Aligned_cols=188 Identities=14% Similarity=0.122 Sum_probs=125.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----c---cccCCeeEEecChHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----A---MEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~---~~~~~i~yvfq~~~lf~~~ 193 (399)
+....+....+|++++|+||||||||||+++|+|.+++..| .+........ . .....++|+||++.+|+.+
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG-EVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF 98 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence 33334455679999999999999999999999999999888 5544322111 0 0114589999997666544
Q ss_pred HhhhhhHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 194 IKDGKFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+....+..... .+.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+
T Consensus 99 ----tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 174 (221)
T TIGR02211 99 ----TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDN 174 (221)
T ss_pred ----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCH
Confidence 677776653222222221 22222222 111111222222333345667777899999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
.+++.+.+.|.++.++. ..++++++|+++.+. .+++++.+.+|.++
T Consensus 175 ~~~~~l~~~l~~~~~~~-------~~tii~~tH~~~~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 175 NNAKIIFDLMLELNREL-------NTSFLVVTHDLELAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHh-hcCEEEEEeCCEec
Confidence 99999999998865431 238899999998874 47888888877553
No 107
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.79 E-value=3.9e-20 Score=171.32 Aligned_cols=181 Identities=15% Similarity=0.154 Sum_probs=124.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+|+.+ +
T Consensus 21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~----t 95 (214)
T TIGR02673 21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRG-QVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR----T 95 (214)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcccCCHHHHHHHHhheEEEecChhhccCC----c
Confidence 3345569999999999999999999999999999888 5543222111 01234689999998777654 6
Q ss_pred hHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++.... .+.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.++..
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~ 175 (214)
T TIGR02673 96 VYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSER 175 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHH
Confidence 77776654322332222 22222222 11111111222223334566677779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
+.+.++++.++ ..++++++|+++++...+++++.+.+|
T Consensus 176 l~~~l~~~~~~--------~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 176 ILDLLKRLNKR--------GTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHc--------CCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 99999986432 238899999999999889998887765
No 108
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.8e-20 Score=179.09 Aligned_cols=190 Identities=13% Similarity=0.085 Sum_probs=133.1
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChH-HHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERS-VMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~-lf~~~~~~~~~~ 200 (399)
.+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++. .+... ++.
T Consensus 24 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~----tv~ 98 (274)
T PRK13647 24 LSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG-RVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS----TVW 98 (274)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce-EEEECCEECCCCCHHHHHhhEEEEecChhhhhccC----cHH
Confidence 3344569999999999999999999999999999888 554432211 1111245899999863 23333 677
Q ss_pred HHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
+++.+.....+...... ...++. ++....+-.+..+....+++...+.+++.+|++++||||++++|+.++..+.
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~ 178 (274)
T PRK13647 99 DDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLM 178 (274)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence 77765433223333222 222222 2211122222233333456667778999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
+.+.++.++ ..++++++|+++++.+.+++++.+.+|.++..++++
T Consensus 179 ~~l~~~~~~--------g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 223 (274)
T PRK13647 179 EILDRLHNQ--------GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS 223 (274)
T ss_pred HHHHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999986532 248999999999999999999999999988877654
No 109
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.2e-20 Score=180.28 Aligned_cols=195 Identities=11% Similarity=0.073 Sum_probs=135.5
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChH-HHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERS-VMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~-lf~~~~~~~~~~ 200 (399)
.+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++. .+... ++.
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~----tv~ 100 (279)
T PRK13650 26 VSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG-QIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA----TVE 100 (279)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEECCcCcHHHHHhhceEEEcChHHhcccc----cHH
Confidence 3445569999999999999999999999999999888 554322111 1112345899999873 44443 777
Q ss_pred HHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
+++.+....++...... .+.++. +..-..+..+..+....+++...+.+++.+|++++||||++++|+.++..+.
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~ 180 (279)
T PRK13650 101 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180 (279)
T ss_pred HHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 77766543334443322 222222 2211122222222333456666777999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.++..+. ..++++++|+++++ ..+++++.+.+|++...+++.+++..
T Consensus 181 ~~l~~l~~~~-------g~tilivtH~~~~~-~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 181 KTIKGIRDDY-------QMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHHHHHhc-------CCEEEEEecCHHHH-HhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999876432 34899999999988 57999999999998887776655543
No 110
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3.3e-20 Score=182.81 Aligned_cols=205 Identities=13% Similarity=0.075 Sum_probs=138.5
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChH--HHHHHH
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERS--VMEKAI 194 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~--lf~~~~ 194 (399)
.+.++...+|++++|+|+||||||||+++|+|++++..| .+........ ...+..++|+||++. +++.+
T Consensus 32 ~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G-~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~- 109 (327)
T PRK11308 32 DGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGG-ELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRK- 109 (327)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc-EEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCcc-
Confidence 334455679999999999999999999999999999888 5543221110 111346999999963 33433
Q ss_pred hhhhhHHHHHHhcccc-CCcHHH----HHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 195 KDGKFLEFASVHGNLY-GTSVEA----VEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~-g~~~~~----i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.+++......+ +..... +.+.++. ++. ..++..+..+....+|+...+.+++.+|+++++|||++++|
T Consensus 110 ---~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD 186 (327)
T PRK11308 110 ---KVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186 (327)
T ss_pred ---CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCC
Confidence 3333332211111 122222 2222222 110 01111122222234566667779999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
..++.++.+.|.++.++. ..++++++||+..+...+++++.+..|.++..+++.+++..|......
T Consensus 187 ~~~~~~i~~lL~~l~~~~-------g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 187 VSVQAQVLNLMMDLQQEL-------GLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred HHHHHHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCCCCHHHH
Confidence 999999999999876543 338999999999999999999999999999999888888777654433
No 111
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=3.5e-20 Score=171.37 Aligned_cols=184 Identities=14% Similarity=0.092 Sum_probs=127.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
....+|++++|+||||||||||+++|+|+.++..| .+........ ......++|+||++.+|+.+ ++.+++.+
T Consensus 19 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~enl~~ 93 (211)
T cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSG-RVLINGVDVTAAPPADRPVSMLFQENNLFAHL----TVEQNVGL 93 (211)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcCcCCHhHccEEEEecccccCCCC----cHHHHHhc
Confidence 44569999999999999999999999999999888 5544222111 01124689999998776654 67777765
Q ss_pred hcccc-CC---cHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 206 HGNLY-GT---SVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 206 ~~~~~-g~---~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
..... .. ....+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 173 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD 173 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 32211 11 11223333322 111111111222233345566677799999999999999999999999999999998
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+..+. ..++++++|+++++...+++++.+.+|.++.
T Consensus 174 ~~~~~-------~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 174 LHAET-------KMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HHHhc-------CCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 65431 3488999999999999999999999887654
No 112
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.78 E-value=2.1e-20 Score=184.37 Aligned_cols=209 Identities=16% Similarity=0.122 Sum_probs=139.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc---ccceeeecCCCc-----c---ccccCCeeEEecCh--H
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM---FGFSVSHTTRAP-----R---AMEKDGVHYHFTER--S 188 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~---~g~~i~~ttr~~-----~---~~~~~~i~yvfq~~--~ 188 (399)
+..+.++...+|++++|+|+||||||||+++|+|++++. .| .+....... . ....+.++|+||++ .
T Consensus 31 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG-~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~ 109 (330)
T PRK09473 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGG-SATFNGREILNLPEKELNKLRAEQISMIFQDPMTS 109 (330)
T ss_pred EEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCe-EEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhh
Confidence 333444566799999999999999999999999999874 67 454322111 1 11123699999997 3
Q ss_pred HHHHHHhhhhhHHHHHHhccccCCcHHHH----HHHHHc-CCc---eEEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 189 VMEKAIKDGKFLEFASVHGNLYGTSVEAV----EAVADA-GKR---CILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 189 lf~~~~~~~~~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~---~vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+++.+.....+.+...... +...... .+.++. ++. ..++..+..+....+|+...+.+++.+|+++++|
T Consensus 110 l~p~~~v~~~i~~~~~~~~---~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilD 186 (330)
T PRK09473 110 LNPYMRVGEQLMEVLMLHK---GMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIAD 186 (330)
T ss_pred cCCCCCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 3343311112223322211 2222222 222221 110 0011112222233456666777999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
||++++|..++..+.+.|.++.++. ..++++++||++.+...+++++.+..|.++..+++.+++..|......
T Consensus 187 EPts~LD~~~~~~i~~lL~~l~~~~-------g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p~~pyt~ 259 (330)
T PRK09473 187 EPTTALDVTVQAQIMTLLNELKREF-------NTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYSI 259 (330)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHc-------CCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHH
Confidence 9999999999999999999876543 238999999999999999999999999999999988888888665544
Q ss_pred c
Q 015825 341 K 341 (399)
Q Consensus 341 ~ 341 (399)
.
T Consensus 260 ~ 260 (330)
T PRK09473 260 G 260 (330)
T ss_pred H
Confidence 3
No 113
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.8e-20 Score=183.28 Aligned_cols=208 Identities=15% Similarity=0.105 Sum_probs=139.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC----cccceeeecCCCc--------cccccCCeeEEecChH-
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS----MFGFSVSHTTRAP--------RAMEKDGVHYHFTERS- 188 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~----~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~- 188 (399)
+..+.++...+|++++|+|+||||||||+++|+|++++ ..| .+....... +....+.++|+||++.
T Consensus 22 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G-~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAE-KLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcce-EEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 33444456679999999999999999999999999873 556 444322111 1111235899999963
Q ss_pred -HHHHHHhhhhhHHHHHHhccccCCcHHH----HHHHHHc-CCc---eEEecchhhHHHHHcCCcceeEEEEcCCChHHH
Q 015825 189 -VMEKAIKDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKR---CILDIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 189 -lf~~~~~~~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~---~vldld~~g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
+++.+.....+.++.... .+..... +.+.++. ++. ..++..+..+....+|++..+.+++.+|+++++
T Consensus 101 ~l~p~~~v~~~i~~~l~~~---~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llil 177 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVH---QGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIA 177 (326)
T ss_pred hcCCcCCHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 344331111333433322 1222222 2222222 111 011112222333356667777899999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
|||++++|..++.++.+.|+++.++. ..++++++||++.+...+++++.+..|+++..+++.+++..|.....
T Consensus 178 DEPts~LD~~~~~~il~lL~~l~~~~-------g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p~hpyt 250 (326)
T PRK11022 178 DEPTTALDVTIQAQIIELLLELQQKE-------NMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYT 250 (326)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCCChHH
Confidence 99999999999999999999876542 23899999999999999999999999999999988888877765443
Q ss_pred h
Q 015825 340 S 340 (399)
Q Consensus 340 ~ 340 (399)
.
T Consensus 251 ~ 251 (326)
T PRK11022 251 Q 251 (326)
T ss_pred H
Confidence 3
No 114
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=8.1e-20 Score=160.80 Aligned_cols=220 Identities=14% Similarity=0.092 Sum_probs=159.0
Q ss_pred HHHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee--------cCCCc-------c--
Q 015825 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH--------TTRAP-------R-- 173 (399)
Q Consensus 111 ~~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~--------ttr~~-------~-- 173 (399)
+++-|.+|.--+....+....+|.++.|+|.|||||||++++|.=+..|..| .|.. +++.- +
T Consensus 10 ~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G-~I~v~geei~~k~~~~G~l~~ad~~q~ 88 (256)
T COG4598 10 EDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAG-SIRVNGEEIRLKRDKDGQLKPADKRQL 88 (256)
T ss_pred hHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCc-eEEECCeEEEeeeCCCCCeeeCCHHHH
Confidence 4555777765555555555679999999999999999999999999999887 3331 11110 0
Q ss_pred ccccCCeeEEecChHHHHHHHhhhhhHHHHHHh-ccccCCcHHHHHHHHHcCCc-----eEEecchhhHHHHHcCCccee
Q 015825 174 AMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH-GNLYGTSVEAVEAVADAGKR-----CILDIDVQGARSVRASPLDAI 247 (399)
Q Consensus 174 ~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~-~~~~g~~~~~i~~~~~~g~~-----~vldld~~g~~~l~~~~~~~~ 247 (399)
...+...+++||++.+|.+| +++||+.-. -+..|.++.+..+..+..+. .--+.-|..+...++|+...+
T Consensus 89 ~r~Rs~L~mVFQ~FNLWsHm----tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 89 QRLRTRLGMVFQHFNLWSHM----TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHhhHhhhhcchhHHH----HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 11123478999999999999 899887433 34466666655544332111 111111211222244555666
Q ss_pred EEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCC
Q 015825 248 FIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTS 327 (399)
Q Consensus 248 ~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~ 327 (399)
.+|+..|+..++|||++++||+.-.++.+.++.+.++ .-|.|++||.+.-|-+...+++-+.+|.+..+|+|
T Consensus 165 RaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE--------grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 165 RALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE--------GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh--------CCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 7999999999999999999998888888888876643 22899999999999999999999999999999999
Q ss_pred ccccCCCcchhhhccc
Q 015825 328 PKGIDLPADHSVSKVA 343 (399)
Q Consensus 328 ~~~~~~p~~~~v~~~~ 343 (399)
++++.+|....+.++.
T Consensus 237 ~qvf~nP~S~RlkqFl 252 (256)
T COG4598 237 EQVFGNPQSPRLKQFL 252 (256)
T ss_pred HHHhcCCCCHHHHHHH
Confidence 9999999887777653
No 115
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=5.1e-20 Score=172.97 Aligned_cols=190 Identities=13% Similarity=0.094 Sum_probs=127.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc--------cccCCeeEEecChHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA--------MEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~--------~~~~~i~yvfq~~~lf~~~ 193 (399)
+....++...+|++++|+||||||||||+++|+|++++..| .+......... .....++|+||++.+|+.+
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG-DVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF 102 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCC
Confidence 33334455668999999999999999999999999999888 55443221110 1124689999997766554
Q ss_pred HhhhhhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 194 IKDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+....++..... +.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+
T Consensus 103 ----tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 178 (233)
T PRK11629 103 ----TALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178 (233)
T ss_pred ----CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 6777776543222222222 2222222 111111111222222345666777799999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeec
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNH 324 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~ 324 (399)
.+++.+.+.++++.++ ...++++++|+++++.. +++++.+.+|.++..
T Consensus 179 ~~~~~l~~~l~~~~~~-------~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~ 226 (233)
T PRK11629 179 RNADSIFQLLGELNRL-------QGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAE 226 (233)
T ss_pred HHHHHHHHHHHHHHHh-------CCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEE
Confidence 9999999999886532 13488999999998765 568888888877653
No 116
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=6.8e-20 Score=172.07 Aligned_cols=198 Identities=14% Similarity=0.108 Sum_probs=136.8
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
.+....+|++++|+||||||||||+++|+|.+++..| .+........ ......++|+||++.+|..+ ++.+++
T Consensus 19 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~----t~~~nl 93 (232)
T cd03300 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSG-EILLDGKDITNLPPHKRPVNTVFQNYALFPHL----TVFENI 93 (232)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcCcCChhhcceEEEecccccCCCC----cHHHHH
Confidence 3344568999999999999999999999999999888 4443221110 11134689999998776544 666766
Q ss_pred HHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 204 SVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 204 ~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
.+....++.... .+...++. +....++..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l 173 (232)
T cd03300 94 AFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLEL 173 (232)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 554333332222 22222222 2222222222223333455666777999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
.++.++. ..++++++|+++++...+++++.+.+|.+...+++.+....+.
T Consensus 174 ~~~~~~~-------~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~~ 223 (232)
T cd03300 174 KRLQKEL-------GITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPA 223 (232)
T ss_pred HHHHHHc-------CCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCCc
Confidence 9875431 2389999999999988999999999998887776665655543
No 117
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=5.4e-20 Score=175.32 Aligned_cols=191 Identities=15% Similarity=0.109 Sum_probs=129.4
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
..+.+....+|++++|+||||||||||+++|+|++++..| .+......... ....++|+||++.+++.. ++.++
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~-~~~~~~~v~q~~~~~~~~----tv~e~ 90 (255)
T PRK11248 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG-SITLDGKPVEG-PGAERGVVFQNEGLLPWR----NVQDN 90 (255)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCC-CCCcEEEEeCCCccCCCC----cHHHH
Confidence 3334455669999999999999999999999999999888 55432221111 112379999997766544 67777
Q ss_pred HHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 203 ASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 203 ~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
+.+....++.... .+.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+.+.+.+.
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 170 (255)
T PRK11248 91 VAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL 170 (255)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 6654322232222 22222222 111111112222233345666677799999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc--CCeeeecCC
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD--GSIATNHQT 326 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~--~~~~~~~~~ 326 (399)
|.++.++- ..++|+++|+++++...+++++.+. +|.++...+
T Consensus 171 L~~~~~~~-------g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 171 LLKLWQET-------GKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLP 214 (255)
T ss_pred HHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEec
Confidence 98864321 3488999999999999999999887 477766543
No 118
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.78 E-value=4.9e-20 Score=173.92 Aligned_cols=197 Identities=15% Similarity=0.121 Sum_probs=135.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----ccccCCeeEEecChHHHHHHHhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----AMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
+..+.+....+|++++|+||||||||||+++|+|.+++..| .+........ .....+++|+||++.+|+.+
T Consensus 17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--- 92 (242)
T TIGR03411 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEG-SVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL--- 92 (242)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEECCeecCCCCHHHHHhcCeeEeccccccCCCC---
Confidence 34444455669999999999999999999999999999888 5554322211 11224689999998777655
Q ss_pred hhhHHHHHHhccc--------cCCcH----HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 197 GKFLEFASVHGNL--------YGTSV----EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 197 ~~~~E~~~~~~~~--------~g~~~----~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.+++.+.... ++... ..+.+.++. +....++-.+..+....++++..+.+++.+|++++||||+
T Consensus 93 -tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt 171 (242)
T TIGR03411 93 -TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV 171 (242)
T ss_pred -CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 677776653211 11111 122222222 1111112112222223455666777999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+++|+.+++.+.+.++++.. ..++++++|+++++...+++++.+.+|.++..+++.++..
T Consensus 172 ~~LD~~~~~~l~~~l~~~~~---------~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 172 AGMTDEETEKTAELLKSLAG---------KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred cCCCHHHHHHHHHHHHHHhc---------CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999988642 1288999999999999999999999998887776665543
No 119
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.78 E-value=3.3e-20 Score=171.74 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=124.9
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
.+....+|++++|+||||||||||+++|+|.+++..| .+........ ......++|+||++.+|+.+ +
T Consensus 20 ~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~----t 94 (214)
T cd03292 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSG-TIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR----N 94 (214)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC----c
Confidence 3345569999999999999999999999999999888 5543221110 11234689999998777655 6
Q ss_pred hHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++...+. +.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+++.
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 174 (214)
T cd03292 95 VYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence 777776543323322222 2222322 11111111222222334566667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
+.+.++++.++ ..++++++|+++.+...+++++.+.+|.
T Consensus 175 ~~~~l~~~~~~--------~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 175 IMNLLKKINKA--------GTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred HHHHHHHHHHc--------CCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999886432 2388999999999888888888887663
No 120
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.78 E-value=4.2e-20 Score=173.87 Aligned_cols=196 Identities=14% Similarity=0.111 Sum_probs=133.1
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
....+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+++.+ ++
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~----t~ 91 (236)
T TIGR03864 17 LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEG-QISVAGHDLRRAPRAALARLGVVFQQPTLDLDL----SV 91 (236)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCEEcccCChhhhhhEEEeCCCCCCcccC----cH
Confidence 3333445569999999999999999999999999999888 554322111 011123589999987665544 67
Q ss_pred HHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 200 LEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
.+++.+....++..... +.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+++.+
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l 171 (236)
T TIGR03864 92 RQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171 (236)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 77766544333332221 2222222 111111112222223345666777799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
.+.|.++.++. ..++++++|+++++. .+++++.+.+|.++..+++.++.
T Consensus 172 ~~~l~~~~~~~-------~~tiii~sH~~~~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 172 VAHVRALCRDQ-------GLSVLWATHLVDEIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHHHHHHHHhC-------CCEEEEEecChhhHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99998865321 238899999999986 49999999999888777655544
No 121
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.78 E-value=6.1e-20 Score=174.96 Aligned_cols=202 Identities=13% Similarity=0.067 Sum_probs=137.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----------------cccccCCeeEEe
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----------------RAMEKDGVHYHF 184 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----------------~~~~~~~i~yvf 184 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+|
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 98 (257)
T PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEG-SIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF 98 (257)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEcccccccccccccccchHHHHHhhceEEEe
Confidence 33334455569999999999999999999999999999888 554322111 111234689999
Q ss_pred cChHHHHHHHhhhhhHHHHHHhc-cccCCcHH----HHHHHHHc-CCceEE-ecchhhHHHHHcCCcceeEEEEcCCChH
Q 015825 185 TERSVMEKAIKDGKFLEFASVHG-NLYGTSVE----AVEAVADA-GKRCIL-DIDVQGARSVRASPLDAIFIFICPPSME 257 (399)
Q Consensus 185 q~~~lf~~~~~~~~~~E~~~~~~-~~~g~~~~----~i~~~~~~-g~~~vl-dld~~g~~~l~~~~~~~~~ili~~P~ll 257 (399)
|++.+++.+ ++.|++.+.. ..++.... .+.+.++. +....+ +-.+..+....+++...+.+++.+|+++
T Consensus 99 q~~~l~~~~----sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 174 (257)
T PRK10619 99 QHFNLWSHM----TVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVL 174 (257)
T ss_pred cCcccCCCC----cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 998776654 6777765422 12222222 22222222 111110 1111222233455666777999999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcc
Q 015825 258 ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 258 lLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~ 336 (399)
+||||++++|+.+++.+.+.|+++.++ ..++++++|+++++...+++++.+.+|.++..+++.++...|..
T Consensus 175 llDEPt~~LD~~~~~~l~~~l~~l~~~--------g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 245 (257)
T PRK10619 175 LFDEPTSALDPELVGEVLRIMQQLAEE--------GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQS 245 (257)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhhCccC
Confidence 999999999999999999998876432 34889999999999888999999999999887776666655543
No 122
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=5.8e-20 Score=174.72 Aligned_cols=200 Identities=12% Similarity=0.115 Sum_probs=135.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
+..+.+....+|++++|+||||||||||+++|+|+.++..| .+....... ......+++|+||++.+|+.+
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--- 95 (255)
T PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG-TILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREM--- 95 (255)
T ss_pred EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcc-eEEECCEECCCCCHHHHHhcCeEEeccCcccCCCC---
Confidence 34444455669999999999999999999999999999888 554322211 111123578999998777655
Q ss_pred hhhHHHHHHhcc----------ccCC-----c-H---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCCh
Q 015825 197 GKFLEFASVHGN----------LYGT-----S-V---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSM 256 (399)
Q Consensus 197 ~~~~E~~~~~~~----------~~g~-----~-~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~l 256 (399)
++.+++.+... .++. . . ..+.+.++. +....++-.+..+....++++..+.+++.+|++
T Consensus 96 -tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 174 (255)
T PRK11300 96 -TVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEI 174 (255)
T ss_pred -cHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 67777665321 1110 0 0 111222221 111111111222222345666777799999999
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 257 EELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 257 llLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
++||||++++|+.++..+.+.|.++.++. ..++++++|+++++...+++++.+.+|.++..+++.++...
T Consensus 175 lllDEPt~~LD~~~~~~l~~~L~~~~~~~-------~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 244 (255)
T PRK11300 175 LMLDEPAAGLNPKETKELDELIAELRNEH-------NVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNN 244 (255)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHhhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhhC
Confidence 99999999999999999999999875431 24889999999999999999999999998877776655443
No 123
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=4.4e-20 Score=177.99 Aligned_cols=197 Identities=15% Similarity=0.081 Sum_probs=135.8
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChH-HHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERS-VMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~-lf~~~~~~~~~~ 200 (399)
.++...+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++. .+... ++.
T Consensus 23 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~----tv~ 97 (277)
T PRK13652 23 INFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSG-SVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP----TVE 97 (277)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHhheEEEecCcccccccc----cHH
Confidence 3445569999999999999999999999999999888 554322111 1112345899999864 22222 677
Q ss_pred HHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
+++.+....++...+.. .+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.++..+.
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~ 177 (277)
T PRK13652 98 QDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177 (277)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 77765433333333322 222222 1111111112222233455566677999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.++++.++. ..++++++|+++++.+.+++++.+.+|.++..+++.+++..+
T Consensus 178 ~~l~~l~~~~-------g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 178 DFLNDLPETY-------GMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHHHHHHHhc-------CCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCH
Confidence 9998876432 238899999999999999999999999998888777666543
No 124
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.78 E-value=6.9e-20 Score=169.27 Aligned_cols=184 Identities=17% Similarity=0.127 Sum_probs=122.2
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHH-HHHHHhhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSV-MEKAIKDG 197 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~l-f~~~~~~~ 197 (399)
..+.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.. ++.+
T Consensus 17 l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~---- 91 (211)
T cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSG-EVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP---- 91 (211)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEcccCCHHHHHhhceEEecChhhhcCCC----
Confidence 3334445569999999999999999999999999999888 554322111 11123458999998643 3333
Q ss_pred hhHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 198 KFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++.+++.+....++.... .+.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+++
T Consensus 92 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 171 (211)
T cd03225 92 TVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171 (211)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 666776553322222222 12222222 1111111111222223455666777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
.+.+.|.++..+ ..++++++|+++++...+++++.+.+|
T Consensus 172 ~~~~~l~~~~~~--------~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 172 ELLELLKKLKAE--------GKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred HHHHHHHHHHHc--------CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999876532 238899999999998888998887665
No 125
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.78 E-value=5.3e-20 Score=175.54 Aligned_cols=187 Identities=16% Similarity=0.103 Sum_probs=131.2
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
..+....+|++++|+||||||||||+++|+|++++..| .+........ .....++|+||++.+|+.+ ++.+++.
T Consensus 30 ~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~-~~~~~i~~v~q~~~l~~~~----tv~enl~ 103 (257)
T PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG-ELLAGTAPLA-EAREDTRLMFQDARLLPWK----KVIDNVG 103 (257)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEHH-HhhCceEEEecCccCCCCC----cHHHHHH
Confidence 34445568999999999999999999999999999888 5543222211 1124589999997766544 7777776
Q ss_pred HhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 205 VHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
+.. +......+.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.++..+.+.|.++.+
T Consensus 104 ~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 181 (257)
T PRK11247 104 LGL--KGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQ 181 (257)
T ss_pred hcc--cchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 532 11112233333332 111111222222333345666777799999999999999999999999999999988654
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCC
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQT 326 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~ 326 (399)
+. ..++++++|+++.+...+++++.+.+|.++..++
T Consensus 182 ~~-------~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~ 217 (257)
T PRK11247 182 QH-------GFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT 217 (257)
T ss_pred Hc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecc
Confidence 31 2388999999999988899999999998876554
No 126
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=4.5e-20 Score=178.46 Aligned_cols=196 Identities=12% Similarity=0.074 Sum_probs=135.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc------cccccCCeeEEecChHH-HHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTERSV-MEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~l-f~~~~~~~~ 198 (399)
.+....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++.. +... +
T Consensus 25 vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G-~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~----t 99 (283)
T PRK13636 25 ININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG-RILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA----S 99 (283)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcc-EEEECCEECCCCcchHHHHHhhEEEEecCcchhhccc----c
Confidence 3345568999999999999999999999999999888 554433221 11123468999998632 2222 6
Q ss_pred hHHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++.+.... ...++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.++..
T Consensus 100 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~ 179 (283)
T PRK13636 100 VYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179 (283)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 7777765433334333322 222222 11111111122222234556667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.++++.++. ..++++++|+++++...+++++.+.+|.++..+++.++...
T Consensus 180 l~~~l~~l~~~~-------g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 180 IMKLLVEMQKEL-------GLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHHHHHHhC-------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999998875432 23899999999999989999999999999888877666543
No 127
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=4.2e-20 Score=178.36 Aligned_cols=194 Identities=14% Similarity=0.112 Sum_probs=133.5
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChH-HHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERS-VMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~-lf~~~~~~~~~~ 200 (399)
.+....+|++++|+||||||||||+++|+|..+|..| .+...... ........++|+||++. .+... ++.
T Consensus 26 vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~----tv~ 100 (279)
T PRK13635 26 VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG-TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA----TVQ 100 (279)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc----cHH
Confidence 3345569999999999999999999999999999888 55432211 11112346899999974 44433 777
Q ss_pred HHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
+++.+....++..... +...+.. ++...++..+..+....+++...+.+++.+|++++||||++++|+.++..+.
T Consensus 101 enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~ 180 (279)
T PRK13635 101 DDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL 180 (279)
T ss_pred HHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 8876643333333322 2222222 2211111122222223455666777999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.|+++..+. ..++++++|+++++. .+++++.+.+|.++..+++.++..
T Consensus 181 ~~l~~l~~~~-------~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 181 ETVRQLKEQK-------GITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHHHHHcC-------CCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHhc
Confidence 9999875431 348999999999886 599999999998887776655443
No 128
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1e-19 Score=171.64 Aligned_cols=200 Identities=14% Similarity=0.132 Sum_probs=135.3
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
.+..+.+....+|++++|+||||||||||+++|+|+.++..| .+....... ......+++|+||++.+++.+
T Consensus 17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-- 93 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG-NIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL-- 93 (241)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHHHHhCeEEeccCCcccccC--
Confidence 344444455679999999999999999999999999999888 554322211 111134689999998766654
Q ss_pred hhhhHHHHHHhccccC-CcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 196 DGKFLEFASVHGNLYG-TSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g-~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+....++ .... .+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.
T Consensus 94 --tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (241)
T PRK10895 94 --SVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 171 (241)
T ss_pred --cHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 67777665432221 1111 12222222 1111111111112223455666777999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+++.+.+.+..+..+ ..++++++|+++++...+++++.+.+|.++..+++.++...
T Consensus 172 ~~~~l~~~l~~~~~~--------g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 172 SVIDIKRIIEHLRDS--------GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHHHHHHHHHHHhc--------CCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 999998888875421 23889999999999999999999999998877776655443
No 129
>PRK10908 cell division protein FtsE; Provisional
Probab=99.78 E-value=6.2e-20 Score=171.04 Aligned_cols=185 Identities=12% Similarity=0.072 Sum_probs=127.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+++.+ +
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~----t 95 (222)
T PRK10908 21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAG-KIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDR----T 95 (222)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccCChhHHHHHHhheEEEecCccccccc----c
Confidence 3445569999999999999999999999999999888 5543221111 01234689999998766554 6
Q ss_pred hHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++..... +.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+++.
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (222)
T PRK10908 96 VYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEG 175 (222)
T ss_pred HHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence 777776543333333222 2222222 11111111122222234566667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+.+.+.++.++ ..++++++|+++++...+++++.+.+|.++.
T Consensus 176 l~~~l~~~~~~--------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 176 ILRLFEEFNRV--------GVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99998876432 2388999999999998899999998887653
No 130
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.8e-20 Score=179.32 Aligned_cols=194 Identities=12% Similarity=0.110 Sum_probs=133.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecChH-HHHHHHhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTERS-VMEKAIKD 196 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~-lf~~~~~~ 196 (399)
.+....+|++++|+||||||||||+++|+|+++|..| .+....... ......+++|+||++. .+..+
T Consensus 26 vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~--- 101 (287)
T PRK13641 26 ISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG-TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFEN--- 101 (287)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEECccccccchHHHHHhceEEEEeChhhhhccc---
Confidence 3345569999999999999999999999999999988 554432211 1112346899999863 22233
Q ss_pred hhhHHHHHHhccccCCcHHHHH----HHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 197 GKFLEFASVHGNLYGTSVEAVE----AVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
++.+++.+....++...+... +.++. +.. .+.+..+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 102 -tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~ 180 (287)
T PRK13641 102 -TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG 180 (287)
T ss_pred -hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 677777654333333333222 22222 111 11111112222234566677779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
++.+.+.|+++.++ ..++++++|+++.+...+++++.+.+|.++..+++.++..
T Consensus 181 ~~~l~~~l~~l~~~--------g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 181 RKEMMQLFKDYQKA--------GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999876421 2388999999999999999999999999888777665544
No 131
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.77 E-value=7.5e-20 Score=172.29 Aligned_cols=197 Identities=13% Similarity=0.100 Sum_probs=132.0
Q ss_pred HHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEec-ChHHH
Q 015825 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFT-ERSVM 190 (399)
Q Consensus 115 ~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq-~~~lf 190 (399)
+.+|...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+|+ ...++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG-EVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCEEccccchhhcccEEEEcCCccccC
Confidence 556666666556666779999999999999999999999999999888 554322111 1112345889984 44444
Q ss_pred HHHHhhhhhHHHHHHhccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 191 EKAIKDGKFLEFASVHGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
+.+ ++.+++.+....++....... ..++. +.....+-.+..+....+++...+.+++.+|++++||||+++
T Consensus 108 ~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 183 (236)
T cd03267 108 WDL----PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred CCC----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 443 566666554333333322222 22221 111111111122222345566677799999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+|+.+.+.+.+.|.++.++ ...++++++|+++++...+++++.+.+|.+..
T Consensus 184 LD~~~~~~l~~~l~~~~~~-------~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 184 LDVVAQENIRNFLKEYNRE-------RGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred CCHHHHHHHHHHHHHHHhc-------CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999999886532 13488999999999988899999998887654
No 132
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.77 E-value=9.7e-20 Score=174.66 Aligned_cols=207 Identities=13% Similarity=0.085 Sum_probs=136.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChH--HHHHHHh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERS--VMEKAIK 195 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~--lf~~~~~ 195 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++. +++..
T Consensus 28 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~-- 104 (267)
T PRK15112 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG-ELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQ-- 104 (267)
T ss_pred eeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCC-EEEECCEECCCCchhhHhccEEEEecCchhhcCcch--
Confidence 33344455679999999999999999999999999999989 554322111 1111235899999864 22332
Q ss_pred hhhhHHHHHHhcccc-CCcHH----HHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 196 DGKFLEFASVHGNLY-GTSVE----AVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~-g~~~~----~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+....+ +.... .+.+.++. +.. ...+..+..+....+++...+.+++.+|++++||||++++|+
T Consensus 105 --tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 182 (267)
T PRK15112 105 --RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDM 182 (267)
T ss_pred --hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCH
Confidence 3444443321111 11211 22222222 110 011111112222345566667789999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
.+++.+.+.|.++.++. ..++|+++|+++++...+++++.+.+|.+...+++.++...|.....+
T Consensus 183 ~~~~~l~~~l~~~~~~~-------g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 247 (267)
T PRK15112 183 SMRSQLINLMLELQEKQ-------GISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTK 247 (267)
T ss_pred HHHHHHHHHHHHHHHHc-------CcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcCCCCHHHH
Confidence 99999999999875432 238899999999998889999999999998888777777766554444
No 133
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=4.3e-20 Score=177.77 Aligned_cols=195 Identities=12% Similarity=0.037 Sum_probs=134.1
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----ccccCCeeEEecChHH-HHHHHhhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----AMEKDGVHYHFTERSV-MEKAIKDGKF 199 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~~~~~~i~yvfq~~~l-f~~~~~~~~~ 199 (399)
.++...+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.. +... ++
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~----tv 95 (274)
T PRK13644 21 INLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKG-KVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR----TV 95 (274)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEECCccccHHHHHhheEEEEEChhhhcccc----hH
Confidence 3445569999999999999999999999999999888 5544322111 1123468999998753 3333 67
Q ss_pred HHHHHHhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 200 LEFASVHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
.+++.+....++.......+ .++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.++..+
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 175 (274)
T PRK13644 96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 77776644333333332222 2221 111111111222222345566677799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
.+.++++.++ ..++++++|+++++ ..+++++.+.+|.++..+++.+++..+
T Consensus 176 ~~~l~~l~~~--------g~til~~tH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~ 226 (274)
T PRK13644 176 LERIKKLHEK--------GKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVLSDV 226 (274)
T ss_pred HHHHHHHHhC--------CCEEEEEecCHHHH-hhCCEEEEEECCEEEEECCHHHHhcCh
Confidence 9999886531 34889999999988 569999999999998877776665544
No 134
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.77 E-value=1.6e-19 Score=173.03 Aligned_cols=200 Identities=15% Similarity=0.102 Sum_probs=135.2
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChH--HHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERS--VME 191 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~--lf~ 191 (399)
.+..+.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++. +++
T Consensus 25 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 103 (265)
T TIGR02769 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG-TVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP 103 (265)
T ss_pred EEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence 344444556679999999999999999999999999999888 5543221111 011346899999863 233
Q ss_pred HHHhhhhhHHHHHHhcc-ccCCcH----HHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 192 KAIKDGKFLEFASVHGN-LYGTSV----EAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~-~~g~~~----~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
.+ ++.+++.+... ..+... ..+.+.++. +.. ..++..+..+....+++...+.+++.+|++++||||++
T Consensus 104 ~~----tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~ 179 (265)
T TIGR02769 104 RM----TVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVS 179 (265)
T ss_pred CC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 23 55565543211 111111 222233322 221 12222222233334566667779999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
++|+.+++.+.+.|+++.++. ..++++++|+++.+...+++++.+.+|.++..+++.++..
T Consensus 180 ~LD~~~~~~l~~~l~~~~~~~-------g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 180 NLDMVLQAVILELLRKLQQAF-------GTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred cCCHHHHHHHHHHHHHHHHhc-------CcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 999999999999999875431 2388999999999999999999999999988887776654
No 135
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.7e-20 Score=175.37 Aligned_cols=201 Identities=13% Similarity=0.095 Sum_probs=136.4
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc-----ccceeeecCCC------ccccccCCeeEEecChHHHHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRA------PRAMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~-----~g~~i~~ttr~------~~~~~~~~i~yvfq~~~lf~~~ 193 (399)
+.+....+|++++|+||||||||||+++|+|++++. .| .+...... .......+++|+||++.+|. +
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~ 102 (254)
T PRK14273 25 NINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEG-NVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-M 102 (254)
T ss_pred ceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCce-EEEECCEecccccccHHHHhhceEEEeecccccc-C
Confidence 334455699999999999999999999999998863 67 44432111 11112346899999976663 3
Q ss_pred HhhhhhHHHHHHhccccCC-cHH----HHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 194 IKDGKFLEFASVHGNLYGT-SVE----AVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~-~~~----~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.+++.+....++. ... .+...++. +.. ...+-.+..+....+++...+.+++.+|++++||||+
T Consensus 103 ----tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt 178 (254)
T PRK14273 103 ----SIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPT 178 (254)
T ss_pred ----cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 677777654322221 111 12222221 110 0001111112222345566667999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
+++|+.+++.+.+.|.++.+ ..++|+++|+++++...+++++.+.+|.++..+++.++...|.+....
T Consensus 179 ~~LD~~~~~~l~~~l~~~~~---------~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 246 (254)
T PRK14273 179 SALDPISTGKIEELIINLKE---------SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNTKTE 246 (254)
T ss_pred cccCHHHHHHHHHHHHHHhc---------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChHHH
Confidence 99999999999999988632 138899999999999999999999999999888888777777655443
No 136
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.3e-20 Score=174.07 Aligned_cols=200 Identities=14% Similarity=0.040 Sum_probs=136.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCC----ccccccCCeeEEecChHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~lf~~ 192 (399)
+..+.++...+|++++|+||||||||||+++|+|+.++ ..| .+...... ........++|+||++.+++.
T Consensus 18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSG-EVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCce-EEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 33344455679999999999999999999999999864 577 55432211 111123468999999766654
Q ss_pred HHhhhhhHHHHHHhccccC--CcHH----HHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 193 AIKDGKFLEFASVHGNLYG--TSVE----AVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g--~~~~----~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
+ ++.+++.+....++ .... .+.+.++. +... .++..+..+....+++...+.+++.+|++++|||
T Consensus 97 ~----tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE 172 (250)
T PRK14247 97 L----SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADE 172 (250)
T ss_pred C----cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4 77777765422221 1212 22222222 1110 1122222233334566677779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
|++++|+.+++.+.+.|.++.. ..++++++|+++++...+++++.+.+|.+...+++.++...|.
T Consensus 173 P~~~LD~~~~~~l~~~l~~~~~---------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 237 (250)
T PRK14247 173 PTANLDPENTAKIESLFLELKK---------DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPR 237 (250)
T ss_pred CCccCCHHHHHHHHHHHHHHhc---------CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcCCc
Confidence 9999999999999999987531 1388999999999989999999999999888887777666554
No 137
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.4e-20 Score=174.17 Aligned_cols=204 Identities=13% Similarity=0.056 Sum_probs=137.4
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc-----c-ccccCCeeEEecChHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP-----R-AMEKDGVHYHFTERSVME 191 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~-----~-~~~~~~i~yvfq~~~lf~ 191 (399)
..+.+....+|++++|+||||||||||+++|+|+.++ ..| .+....... . ......++|+||++.+|+
T Consensus 20 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (251)
T PRK14270 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEG-EVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP 98 (251)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCcc-EEEECCEecccccccHHHHHhheEEEecCCCcCC
Confidence 3333445569999999999999999999999999764 567 444322111 1 111345899999987665
Q ss_pred HHHhhhhhHHHHHHhccccCC-cHHH----HHHHHHcC-Cc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 192 KAIKDGKFLEFASVHGNLYGT-SVEA----VEAVADAG-KR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~-~~~~----i~~~~~~g-~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
+ ++.+++.+....++. .... +.+.++.. .. ...+..+..+....+++...+.+++.+|++++|||
T Consensus 99 -~----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 173 (251)
T PRK14270 99 -M----SIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDE 173 (251)
T ss_pred -C----cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3 677777654333332 1111 22222211 10 00111111222233455666678889999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
|++++|+.++..+.+.|+++.+. .++++++|+++++...+++++.+.+|.++..+++.+++..|....+..
T Consensus 174 P~~~LD~~~~~~l~~~L~~~~~~---------~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 244 (251)
T PRK14270 174 PTSALDPISTLKIEDLMVELKKE---------YTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQKKETED 244 (251)
T ss_pred CcccCCHHHHHHHHHHHHHHHhC---------CeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcCCCChHHHH
Confidence 99999999999999999886431 278999999999999999999999999988888887777765555443
No 138
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=9.1e-20 Score=180.02 Aligned_cols=205 Identities=13% Similarity=0.037 Sum_probs=137.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC----CcccceeeecCCCc-----c---ccccCCeeEEecChHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP----SMFGFSVSHTTRAP-----R---AMEKDGVHYHFTERSV 189 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~----~~~g~~i~~ttr~~-----~---~~~~~~i~yvfq~~~l 189 (399)
+..+.++...+|++++|+|+||||||||+++|+|+.+ +..| .+....... . ....+.++|+||++..
T Consensus 22 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~ 100 (330)
T PRK15093 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTAD-RMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcce-EEEECCEECCcCCHHHHHHHhCCCEEEEecCcch
Confidence 3344445667999999999999999999999999986 3566 554322111 1 1112368999999753
Q ss_pred --HHHHHhhhhhHHHHHHh--cccc-C---Cc----HHHHHHHHHc-CCc---eEEecchhhHHHHHcCCcceeEEEEcC
Q 015825 190 --MEKAIKDGKFLEFASVH--GNLY-G---TS----VEAVEAVADA-GKR---CILDIDVQGARSVRASPLDAIFIFICP 253 (399)
Q Consensus 190 --f~~~~~~~~~~E~~~~~--~~~~-g---~~----~~~i~~~~~~-g~~---~vldld~~g~~~l~~~~~~~~~ili~~ 253 (399)
++.+ ++.+++... ...+ + .. ...+.+.++. ++. .+++-.+..+....+|+...+.+++.+
T Consensus 101 ~l~p~~----tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~ 176 (330)
T PRK15093 101 CLDPSE----RVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQ 176 (330)
T ss_pred hcCccc----cHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCC
Confidence 3333 333333221 1000 1 01 1222233322 111 011112222333356667777899999
Q ss_pred CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 254 P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
|+++++|||++++|+.++.++.+.|+++.++. ..++|+++||++.+...+++++.+.+|+++..+++.+++..
T Consensus 177 P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-------g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~ 249 (330)
T PRK15093 177 PRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN-------NTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTT 249 (330)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-------CCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999876542 34899999999999999999999999999998988888877
Q ss_pred Ccchh
Q 015825 334 PADHS 338 (399)
Q Consensus 334 p~~~~ 338 (399)
|....
T Consensus 250 p~~~y 254 (330)
T PRK15093 250 PHHPY 254 (330)
T ss_pred CCCHH
Confidence 75444
No 139
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=5.7e-20 Score=180.61 Aligned_cols=194 Identities=14% Similarity=0.117 Sum_probs=135.2
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecC----CC----------------ccccccCCeeEEecC
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT----RA----------------PRAMEKDGVHYHFTE 186 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~tt----r~----------------~~~~~~~~i~yvfq~ 186 (399)
+....+|++++|+||||||||||+++|+|++++..| .+.... .. ........++|+||+
T Consensus 46 sl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G-~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~ 124 (320)
T PRK13631 46 SYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG-TIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQF 124 (320)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEECCEEcccccccccccccccccccchHHHHHhcEEEEEEC
Confidence 344568999999999999999999999999999888 554322 11 011123468999998
Q ss_pred hH--HHHHHHhhhhhHHHHHHhccccCCcHHHHHHHHH----c-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHH
Q 015825 187 RS--VMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVAD----A-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEE 258 (399)
Q Consensus 187 ~~--lf~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~----~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lll 258 (399)
+. +|. . ++.+++.+.....+.+.....+.+. . +.. ...+-.+..+...++++...+.+|+.+|++++
T Consensus 125 ~~~~l~~-~----tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLL 199 (320)
T PRK13631 125 PEYQLFK-D----TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILI 199 (320)
T ss_pred chhcccc-c----hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 63 332 2 6777776543222333333222221 1 111 11111122222334566677779999999999
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 259 LEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 259 LDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
||||++++|+.++..+.+.|.++..+ ..++++++|+++++...+++++.+.+|.++..+++.+++..+
T Consensus 200 LDEPtsgLD~~~~~~l~~~L~~l~~~--------g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 200 FDEPTAGLDPKGEHEMMQLILDAKAN--------NKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267 (320)
T ss_pred EECCccCCCHHHHHHHHHHHHHHHHC--------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 99999999999999999999876432 348999999999999999999999999999888877666544
No 140
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=7.1e-20 Score=174.00 Aligned_cols=200 Identities=15% Similarity=0.048 Sum_probs=135.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc-----ccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~-----~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+..+.+....+|++++|+||||||||||+++|+|++++. .| .+....... .......++|+||++.+|
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEG-EVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCce-EEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 333344555699999999999999999999999998763 67 554322111 111234689999998777
Q ss_pred HHHHhhhhhHHHHHHhccccCC--cHH----HHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT--SVE----AVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~--~~~----~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
+.+ ++.+++.+....++. ..+ .+.+.++. +... .++-.+..+....+++...+.+++.+|++++|
T Consensus 98 ~~~----tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 173 (253)
T PRK14267 98 PHL----TIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLM 173 (253)
T ss_pred CCC----cHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 654 677776653222221 222 22222222 1100 11112222223345666677799999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
|||++++|+.+.+.+.+.|+++.+ ..++|+++|+++++...+++++.+.+|+++..+++.++...|.
T Consensus 174 DEP~~~LD~~~~~~l~~~l~~~~~---------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 240 (253)
T PRK14267 174 DEPTANIDPVGTAKIEELLFELKK---------EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPE 240 (253)
T ss_pred cCCCccCCHHHHHHHHHHHHHHhh---------CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 999999999999999999988642 1389999999999999999999999999988887776665553
No 141
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.77 E-value=1.4e-19 Score=184.95 Aligned_cols=203 Identities=14% Similarity=0.124 Sum_probs=146.8
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC------ccccccCCeeEEecChH--HHHHHHhhhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA------PRAMEKDGVHYHFTERS--VMEKAIKDGK 198 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~------~~~~~~~~i~yvfq~~~--lf~~~~~~~~ 198 (399)
++...+|++++|+|+||||||||.++|+|+.+|..| .+...... .....+..+-++||++. +.+++ +
T Consensus 311 Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G-~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~----t 385 (539)
T COG1123 311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSG-SIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRM----T 385 (539)
T ss_pred eeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEEeCcccccccchhhhhhhheEEEEeCcccccCccc----c
Confidence 355679999999999999999999999999999887 44432211 11122345789999964 34555 6
Q ss_pred hHHHHHHhccccCC-cHHHHHHHHHcCCceEEecch-------hhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 199 FLEFASVHGNLYGT-SVEAVEAVADAGKRCILDIDV-------QGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 199 ~~E~~~~~~~~~g~-~~~~i~~~~~~g~~~vldld~-------~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+.+.+...-..++. .....++.+.+ +...+++.+ ..+...++|+...+.+|+..|+++++|||++++|+..
T Consensus 386 V~~~i~epL~~~~~~~~~~~~~rv~~-ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsv 464 (539)
T COG1123 386 VGDILAEPLRIHGGGSGAERRARVAE-LLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSV 464 (539)
T ss_pred HHHHHHhHHhhhcccchHHHHHHHHH-HHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHH
Confidence 66655443322221 12222222221 111122322 2222235667777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKV 342 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~ 342 (399)
+.++.+.|..++++++. ++++++||+.-+...++++++|..|+++..++.+.++..|..+.....
T Consensus 465 qa~VlnLl~~lq~e~g~-------t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 465 QAQVLNLLKDLQEELGL-------TYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred HHHHHHHHHHHHHHhCC-------EEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHH
Confidence 99999999999988754 999999999999999999999999999999988889999987765543
No 142
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.77 E-value=9.1e-20 Score=170.97 Aligned_cols=198 Identities=12% Similarity=0.043 Sum_probs=132.0
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCC----cccceeeecCCCccc--cccCCeeEEecChH-HH-HHHHhhhhhH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPS----MFGFSVSHTTRAPRA--MEKDGVHYHFTERS-VM-EKAIKDGKFL 200 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~----~~g~~i~~ttr~~~~--~~~~~i~yvfq~~~-lf-~~~~~~~~~~ 200 (399)
...+|++++|+||||||||||+++|+|+.++ ..| .+.....+... .....++|+||++. .| +.+ ++.
T Consensus 8 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~----t~~ 82 (230)
T TIGR02770 8 SLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSG-EILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF----TMG 82 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcccc-EEEECCEechhhhhhhheeEEEecCchhhcCccc----CHH
Confidence 3458999999999999999999999999988 788 55543322211 11236899999974 23 222 444
Q ss_pred HHHHHhccccCCcH----HHHHHHHHcC-Cc---eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 201 EFASVHGNLYGTSV----EAVEAVADAG-KR---CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 201 E~~~~~~~~~g~~~----~~i~~~~~~g-~~---~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
+++.+....++... ..+.+.++.. .. ...+..+..+....++++..+.+++.+|++++||||++++|+.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~ 162 (230)
T TIGR02770 83 NHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQA 162 (230)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence 44433211122111 1223333221 11 0111111122223455666777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
.+.+.+.++.++. ..++++++|+++++...+++++.+.+|.+...+++.+++..|....
T Consensus 163 ~l~~~l~~~~~~~-------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 221 (230)
T TIGR02770 163 RVLKLLRELRQLF-------GTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHET 221 (230)
T ss_pred HHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHH
Confidence 9999998865421 2388999999999999999999999999988887777766654433
No 143
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.77 E-value=1.5e-19 Score=168.87 Aligned_cols=190 Identities=14% Similarity=0.113 Sum_probs=127.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChH--HHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERS--VMEK 192 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~--lf~~ 192 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++. +++.
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG-SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 33444455679999999999999999999999999999888 5543222111 112346899999973 2333
Q ss_pred HHhhhhhHHHHHHhccccCC-cH-HHHH----HHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 193 AIKDGKFLEFASVHGNLYGT-SV-EAVE----AVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~-~~-~~i~----~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
+ ++.+++.+....++. .. .... +.++. +.. ...+..+..+....+++...+.+++.+|++++||||++
T Consensus 99 ~----tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 174 (228)
T cd03257 99 M----TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTS 174 (228)
T ss_pred C----CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCC
Confidence 3 666666543222221 11 1111 22222 111 11122222233334566677779999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
++|+.+++.+.+.+.++.++. ..++++++|+++++...+++++.+.+|.+..
T Consensus 175 ~LD~~~~~~l~~~l~~~~~~~-------~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 175 ALDVSVQAQILDLLKKLQEEL-------GLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred CCCHHHHHHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 999999999999999875431 2388999999999988899999999887654
No 144
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1e-19 Score=172.95 Aligned_cols=203 Identities=13% Similarity=0.084 Sum_probs=135.8
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCcc------ccccCCeeEEecChHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAPR------AMEKDGVHYHFTERSVME 191 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~~------~~~~~~i~yvfq~~~lf~ 191 (399)
....+....+|++++|+||||||||||+++|+|+.. +..| .+........ ......++|+||++.+|+
T Consensus 22 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (253)
T PRK14242 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEG-EILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP 100 (253)
T ss_pred ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCce-EEEECCEEccccccCHHHHhhcEEEEecCCCCCc
Confidence 333445556999999999999999999999999864 4567 5543221110 111346899999976664
Q ss_pred HHHhhhhhHHHHHHhccccCC-cH----HHHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 192 KAIKDGKFLEFASVHGNLYGT-SV----EAVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~-~~----~~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
. ++.+++.+....++. .. +.+...++. +... .++-.+..+....+++...+.+++.+|++++|||
T Consensus 101 -~----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDE 175 (253)
T PRK14242 101 -K----SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDE 175 (253)
T ss_pred -C----cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 2 566776554222221 11 122222222 1100 0111111222234556667779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
|++++|+.+++.+.+.|+++.. ..++++++|+++++...+++++.+.+|.++..+++.+++..|....+.
T Consensus 176 Pt~~LD~~~~~~l~~~l~~~~~---------~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 245 (253)
T PRK14242 176 PASALDPIATQKIEELIHELKA---------RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPREKQTE 245 (253)
T ss_pred CcccCCHHHHHHHHHHHHHHhc---------CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCCchHHH
Confidence 9999999999999999987632 138899999999999999999999999998888877777666554443
No 145
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.77 E-value=1.1e-19 Score=173.42 Aligned_cols=199 Identities=17% Similarity=0.092 Sum_probs=133.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
+....+....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++.+++.+
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~---- 91 (258)
T PRK13548 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSG-EVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF---- 91 (258)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEEcccCCHHHhhhheEEEccCCcCCCCC----
Confidence 33334455669999999999999999999999999999888 554322111 111123589999987665443
Q ss_pred hhHHHHHHhccccCCc----HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEE------cCCChHHHHHHHHhC
Q 015825 198 KFLEFASVHGNLYGTS----VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFI------CPPSMEELEERLRAR 266 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~----~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili------~~P~lllLDEpl~~l 266 (399)
++.+++.+....++.. ...+.+.++. +.....+-.+..+....++++..+.+++ .+|++++||||++++
T Consensus 92 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~L 171 (258)
T PRK13548 92 TVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSAL 171 (258)
T ss_pred CHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccC
Confidence 6777776543222221 1122222322 1111111112222223455666667888 489999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
|+.+++.+.+.|.++.++. ..++++++|+++++...+++++.+.+|.++..+++.++..
T Consensus 172 D~~~~~~l~~~l~~~~~~~-------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 172 DLAHQHHVLRLARQLAHER-------GLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred CHHHHHHHHHHHHHHHHhc-------CCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 9999999999999865221 2388999999999999999999999998887776655544
No 146
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.77 E-value=1.2e-19 Score=169.68 Aligned_cols=187 Identities=19% Similarity=0.146 Sum_probs=125.3
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--------ccccCCeeEEecChHHHHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--------AMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--------~~~~~~i~yvfq~~~lf~~~~ 194 (399)
..+.+....+|++++|+||||||||||+++|+|++++..| .+........ .....+++|+||++.+++.+
T Consensus 26 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~- 103 (228)
T PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSG-EVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL- 103 (228)
T ss_pred EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe-eEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc-
Confidence 3334455669999999999999999999999999999888 5543221110 01124589999997766544
Q ss_pred hhhhhHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 195 KDGKFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+....++.... .+.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.
T Consensus 104 ---tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~ 180 (228)
T PRK10584 104 ---NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQ 180 (228)
T ss_pred ---CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 666776553222222222 22222222 1111111122222333456666777999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
+.+.+.+.++++..+. ..++++++|+++.+ ..+++++.+.+|.+.
T Consensus 181 ~~~~l~~~l~~~~~~~-------~~tii~~sH~~~~~-~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 181 TGDKIADLLFSLNREH-------GTTLILVTHDLQLA-ARCDRRLRLVNGQLQ 225 (228)
T ss_pred HHHHHHHHHHHHHHhc-------CCEEEEEecCHHHH-HhCCEEEEEECCEEE
Confidence 9999999998875432 23889999999876 558998888888664
No 147
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.4e-19 Score=170.92 Aligned_cols=195 Identities=13% Similarity=0.110 Sum_probs=132.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----------cccccCCeeEEecChHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----------RAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----------~~~~~~~i~yvfq~~~lf~ 191 (399)
+..+.+....+|++++|+||||||||||+++|+|..++..| .+....... ......+++|+||++.+|+
T Consensus 17 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (242)
T PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSG-TLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWP 95 (242)
T ss_pred eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEecccccccchhhHHHHHhheEEEecCccccC
Confidence 33334455569999999999999999999999999999888 555432211 0111346899999987776
Q ss_pred HHHhhhhhHHHHHHh-ccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 192 KAIKDGKFLEFASVH-GNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~-~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
.+ ++.+++.+. ...++..... +.+.++. +....++..+..+....+++...+.+++.+|++++||||+++
T Consensus 96 ~~----tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~ 171 (242)
T PRK11124 96 HL----TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171 (242)
T ss_pred CC----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCc
Confidence 54 666766431 1122222222 2222222 221112222222233345666777799999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
+|+.+++.+.+.++++.++ ..++++++|+++++...+++++.+.+|.++..+++.+
T Consensus 172 LD~~~~~~l~~~l~~~~~~--------~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 172 LDPEITAQIVSIIRELAET--------GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred CCHHHHHHHHHHHHHHHHc--------CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999998876431 2388999999999988899999999998887665443
No 148
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=8.1e-20 Score=176.60 Aligned_cols=194 Identities=13% Similarity=0.066 Sum_probs=133.7
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcc---cceeeecCCCcc----ccccCCeeEEecChH-HHHHHHhhhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMF---GFSVSHTTRAPR----AMEKDGVHYHFTERS-VMEKAIKDGK 198 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~---g~~i~~ttr~~~----~~~~~~i~yvfq~~~-lf~~~~~~~~ 198 (399)
+....+|++++|+||||||||||+++|+|++++.. | .+........ ......++|+||++. .+... +
T Consensus 27 ~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G-~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~----t 101 (282)
T PRK13640 27 SFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS-KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA----T 101 (282)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCc-EEEECCEECCcCCHHHHHhheEEEEECHHHhhccC----C
Confidence 34556899999999999999999999999998876 6 5543222111 111345899999974 34443 7
Q ss_pred hHHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++...+.. .+.++. ++...++..+..+....+++...+.+++.+|++++||||++++|+.++..
T Consensus 102 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~ 181 (282)
T PRK13640 102 VGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQ 181 (282)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 7787765433344444332 222222 11111222222223334556667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.|.++.++. ..++++++|+++.+ ..+++++.+.+|+++..+++.+++..
T Consensus 182 l~~~l~~l~~~~-------g~tvli~tH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 182 ILKLIRKLKKKN-------NLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHHHHHHHhc-------CCEEEEEecCHHHH-HhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999998865421 33889999999988 47999999999999888876666544
No 149
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.76 E-value=1.2e-19 Score=167.79 Aligned_cols=183 Identities=16% Similarity=0.122 Sum_probs=123.6
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc------cccccCCeeEEecChHHHHHHHhhhh
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+.++...+|++++|+||||||||||+++|+|++++..| .+....+.. .......++|+||++.+|+.+ +
T Consensus 18 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~----t 92 (213)
T cd03262 18 GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSG-TIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL----T 92 (213)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCccchhHHHHHhcceEEecccccCCCC----c
Confidence 33445569999999999999999999999999999888 554322211 111234689999998766544 6
Q ss_pred hHHHHHHhcc-ccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 199 FLEFASVHGN-LYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 199 ~~E~~~~~~~-~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
+.+++.+... .++...+. +.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.+++
T Consensus 93 ~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~ 172 (213)
T cd03262 93 VLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVG 172 (213)
T ss_pred HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 6777655321 12222222 2222221 1111111111122223455566677999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
.+.+.++++.++ ..++++++|+++++...+++++.+.+|.
T Consensus 173 ~l~~~l~~~~~~--------~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 173 EVLDVMKDLAEE--------GMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred HHHHHHHHHHHc--------CCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 999999886532 2378899999999988899988887664
No 150
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.2e-19 Score=173.71 Aligned_cols=204 Identities=15% Similarity=0.098 Sum_probs=140.2
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCC----c--c--ccccCCeeEEecChHH--HH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRA----P--R--AMEKDGVHYHFTERSV--ME 191 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~----~--~--~~~~~~i~yvfq~~~l--f~ 191 (399)
++...+|++++|+|.|||||||+.+.|+++++. ..| .+....+. . + ...-+.++|+||++.. -|
T Consensus 25 s~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G-~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnP 103 (316)
T COG0444 25 SFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG-EILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNP 103 (316)
T ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeee-EEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCC
Confidence 355679999999999999999999999999973 334 44432221 1 1 1223468999999632 23
Q ss_pred HHHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCceEEecc---------hhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 192 KAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDID---------VQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld---------~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
-+.-..++.|.+..+.... .+++..+.+.+.+ ..+.+. |..+....+|+...+.+++++|++++.|||
T Consensus 104 v~~Ig~Qi~E~l~~h~~~~--~~~ea~~~a~~~L-~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEP 180 (316)
T COG0444 104 VMTIGDQIAEVLRLHGKGL--SKKEAKERAIELL-ELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEP 180 (316)
T ss_pred hhhHHHHHHHHHHHhhcch--hhHHHHHHHHHHH-HHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCC
Confidence 2222235666655432211 2222222111111 011121 111111234555666799999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
|++||...+.++.+.|++++++. ..+++++|||+.-+.+.+|++++|..|+++..++..+++..|.+.....
T Consensus 181 TTALDvt~QaqIl~Ll~~l~~e~-------~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT~~ 252 (316)
T COG0444 181 TTALDVTVQAQILDLLKELQREK-------GTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTRG 252 (316)
T ss_pred cchhhHHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHHHH
Confidence 99999999999999999988754 3489999999999999999999999999999999999999998776554
No 151
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.2e-19 Score=175.18 Aligned_cols=198 Identities=13% Similarity=0.046 Sum_probs=134.6
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHH-HHHHh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVM-EKAIK 195 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf-~~~~~ 195 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++..+ ...
T Consensus 25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~-- 101 (280)
T PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEG-KVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT-- 101 (280)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEeccccccHHHHhhheEEEecChhhhhccc--
Confidence 33334455569999999999999999999999999999888 554322111 111234689999987422 112
Q ss_pred hhhhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 196 DGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
++.+++.+....++.+... +.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 102 --~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~ 179 (280)
T PRK13633 102 --IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSG 179 (280)
T ss_pred --cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 4566665543333333322 2222222 22112222222223334556667779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
++.+.+.++++.++. ..++++++|+++++.. +++++.+.+|.+...+++.++..
T Consensus 180 ~~~l~~~l~~l~~~~-------g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 180 RREVVNTIKELNKKY-------GITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HHHHHHHHHHHHHhc-------CCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 999999999875431 3488999999999865 99999999999888787666554
No 152
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=7.8e-20 Score=174.58 Aligned_cols=203 Identities=13% Similarity=0.067 Sum_probs=135.4
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~ 191 (399)
..+.+....+|++++|+||||||||||+++|+|+++ +..| .+....... .......++|+||++.+|+
T Consensus 29 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 107 (260)
T PRK10744 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEG-EILLDGENILTPKQDIALLRAKVGMVFQKPTPFP 107 (260)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcce-EEEECCEEccccccchHHHhcceEEEecCCccCc
Confidence 333445556999999999999999999999999985 3567 454322111 1112346899999976664
Q ss_pred HHHhhhhhHHHHHHhcccc-CCcHHH----HHHHHHcCCc-----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 192 KAIKDGKFLEFASVHGNLY-GTSVEA----VEAVADAGKR-----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~-g~~~~~----i~~~~~~g~~-----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
. ++.+++.+....+ +.+.+. +.+.++.... ..++-.+..+....+++...+.+++.+|++++|||
T Consensus 108 -~----tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE 182 (260)
T PRK10744 108 -M----SIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDE 182 (260)
T ss_pred -C----cHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 3 6667765532222 222222 2222222110 00011111122223455666779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
|++++|+.+++.+.+.|+++.. ..++|+++|+++++...+++++.+.+|.++..+++.++...+....+.
T Consensus 183 Pt~~LD~~~~~~l~~~L~~~~~---------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 252 (260)
T PRK10744 183 PCSALDPISTGRIEELITELKQ---------DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPAKKQTE 252 (260)
T ss_pred CCccCCHHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCcHHHH
Confidence 9999999999999999887631 138899999999998899999999999998888777776666554443
No 153
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.6e-19 Score=173.95 Aligned_cols=195 Identities=16% Similarity=0.087 Sum_probs=133.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc------cccccCCeeEEecChH-HHHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTERS-VMEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~-lf~~~~~~~~ 198 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++. .+... +
T Consensus 21 vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~----t 95 (275)
T PRK13639 21 INFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSG-EVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP----T 95 (275)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEECccccchHHHHHhheEEEeeChhhhhccc----c
Confidence 3445569999999999999999999999999999888 554422211 0112346899999963 22222 6
Q ss_pred hHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++..... +.+.++. +..-..+..+..+....+++...+.+++.+|++++||||++++|+.++..
T Consensus 96 v~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 175 (275)
T PRK13639 96 VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175 (275)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 677765532222222222 2222222 11111222222222234555666779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.+.++.++ ..++++++|+++.+...+++++.+.+|.++..+++.+++..
T Consensus 176 l~~~l~~l~~~--------~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 176 IMKLLYDLNKE--------GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHHHHHHHC--------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999886532 23889999999999999999999999998887776666544
No 154
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.76 E-value=5.7e-20 Score=170.19 Aligned_cols=187 Identities=16% Similarity=0.156 Sum_probs=123.5
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
.+..+.+....+|++++|+||||||||||+++|+|+++|..| .+........ ....+++|+||++.++.. ...++.
T Consensus 13 ~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~-~~~~~i~~v~q~~~~~~~--~~~tv~ 88 (213)
T cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG-SIRVFGKPLE-KERKRIGYVPQRRSIDRD--FPISVR 88 (213)
T ss_pred EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC-EEEECCccHH-HHHhheEEeccccccccC--CCCcHH
Confidence 334444455679999999999999999999999999999888 5554332221 123458999998754221 012677
Q ss_pred HHHHHhccccC----Cc-H---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 201 EFASVHGNLYG----TS-V---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 201 E~~~~~~~~~g----~~-~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
|++.+....+. .. . +.+.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.++
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 168 (213)
T cd03235 89 DVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQ 168 (213)
T ss_pred HHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 77765422111 11 1 122222222 111111111111222345556667789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
+.+.+.+.++.++ ..++|+++|+++++...+++++.+.++
T Consensus 169 ~~l~~~l~~~~~~--------~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 169 EDIYELLRELRRE--------GMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred HHHHHHHHHHHhc--------CCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 9999999886531 238899999999998889998888765
No 155
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1e-19 Score=174.90 Aligned_cols=193 Identities=11% Similarity=0.043 Sum_probs=129.4
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc------ccccCCeeEEecChHHH-HHHHhhhhhH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR------AMEKDGVHYHFTERSVM-EKAIKDGKFL 200 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~------~~~~~~i~yvfq~~~lf-~~~~~~~~~~ 200 (399)
....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++..+ ... ++.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~----~~~ 96 (271)
T PRK13638 22 LDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKG-AVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYT----DID 96 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCcc-EEEECCEEcccccCCHHHHHhheEEEeeChhhccccc----cHH
Confidence 44568999999999999999999999999999888 5543222110 11124589999986532 111 344
Q ss_pred HHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
+++.+....++...... ...++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.++..+.
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~ 176 (271)
T PRK13638 97 SDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176 (271)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 55544322233222222 222221 1111111111222223455666777999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.|.++.++ ..++++++|+++++...+++++.+.+|.++..+++.+++..
T Consensus 177 ~~l~~~~~~--------g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 177 AIIRRIVAQ--------GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999886532 23889999999999989999999999998887776655443
No 156
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.1e-19 Score=174.57 Aligned_cols=196 Identities=13% Similarity=0.065 Sum_probs=131.8
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChH-HHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERS-VMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~-lf~~~~~~~~~~ 200 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++. .|+.. ++.
T Consensus 28 isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~----~v~ 102 (269)
T PRK13648 28 VSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG-EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS----IVK 102 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHhheeEEEeChHHhcccc----cHH
Confidence 3345569999999999999999999999999999888 555432221 1112345899999974 34332 444
Q ss_pred HHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
++..+....++..... +.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.+++.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~ 182 (269)
T PRK13648 103 YDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL 182 (269)
T ss_pred HHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 5554432222222222 2222222 1111122122222333455666777999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.++++.++. ..++++++|+++++.. +++++.+.+|.+...+++.++...+
T Consensus 183 ~~L~~~~~~~-------~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 183 DLVRKVKSEH-------NITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHHHHHHHhc-------CCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhcCH
Confidence 9998865321 2388999999998875 9999999999998887766665543
No 157
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.3e-19 Score=193.00 Aligned_cols=205 Identities=10% Similarity=0.006 Sum_probs=142.8
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----c--ccccCCeeEEecCh--HHHHHHH
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----R--AMEKDGVHYHFTER--SVMEKAI 194 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~--~~~~~~i~yvfq~~--~lf~~~~ 194 (399)
.+.++...+|++++|+||||||||||+++|+|+.++..| .+....... . ......++|+||++ .+++.+
T Consensus 341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~- 418 (623)
T PRK10261 341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGG-EIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQ- 418 (623)
T ss_pred eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCc-EEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCC-
Confidence 334455679999999999999999999999999999888 554422111 0 11134689999986 345544
Q ss_pred hhhhhHHHHHHhccccCC-cHH----HHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 195 KDGKFLEFASVHGNLYGT-SVE----AVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~-~~~----~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.+++.+....++. ... .+.+.++. +.. ...+..+..+....+|++..+.+++.+|++++||||++++|
T Consensus 419 ---tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD 495 (623)
T PRK10261 419 ---TVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred ---CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 566665543222221 121 22223322 110 11111222233345667777789999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
+.++.++.+.|+++.++. ..++|+++||++.+...+++++.+.+|+++..+++.+++..|......
T Consensus 496 ~~~~~~i~~ll~~l~~~~-------g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 496 VSIRGQIINLLLDLQRDF-------GIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred HHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHH
Confidence 999999999999876542 238999999999999999999999999999888888888777654433
No 158
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.76 E-value=9.6e-20 Score=174.46 Aligned_cols=200 Identities=15% Similarity=0.068 Sum_probs=134.1
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
.+..+.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+++..
T Consensus 21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~--- 96 (265)
T PRK10253 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHG-HVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI--- 96 (265)
T ss_pred EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCc-EEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC---
Confidence 344444455679999999999999999999999999999888 554322111 111123589999997666543
Q ss_pred hhhHHHHHHhcccc-----CCcH---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 197 GKFLEFASVHGNLY-----GTSV---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 197 ~~~~E~~~~~~~~~-----g~~~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.+++.+....+ .... ..+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|
T Consensus 97 -tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD 175 (265)
T PRK10253 97 -TVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175 (265)
T ss_pred -cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 6666665431100 0111 122222222 11111111111222234455666779999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+++.+.+.|.++.++. ..++++++|+++++...+++++.+.+|.++..+++.++..
T Consensus 176 ~~~~~~l~~~L~~l~~~~-------~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 176 ISHQIDLLELLSELNREK-------GYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999998865321 2388999999999999999999999999887777665543
No 159
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.4e-19 Score=174.58 Aligned_cols=192 Identities=13% Similarity=0.109 Sum_probs=131.7
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--------ccccCCeeEEecChH--HHHHHHhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--------AMEKDGVHYHFTERS--VMEKAIKD 196 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--------~~~~~~i~yvfq~~~--lf~~~~~~ 196 (399)
+....+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++. ++. .
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~--- 101 (280)
T PRK13649 27 NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG-SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-E--- 101 (280)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-c---
Confidence 344568999999999999999999999999999888 5543221110 111345899999862 332 2
Q ss_pred hhhHHHHHHhccccCCcHHHHH----HHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 197 GKFLEFASVHGNLYGTSVEAVE----AVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
++.+++.+....++....... +.++. +.. ...+..+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 102 -tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 180 (280)
T PRK13649 102 -TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180 (280)
T ss_pred -cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 677777654333333332222 22222 221 11121122222334566677779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
++.+.+.|.++.++ ..++++++|+++++...+++++.+.+|.+...+++.++..
T Consensus 181 ~~~l~~~l~~~~~~--------~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 181 RKELMTLFKKLHQS--------GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHHHHHHHHC--------CCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999876431 2388999999999998999999999998887776655544
No 160
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=7.9e-20 Score=169.40 Aligned_cols=186 Identities=15% Similarity=0.094 Sum_probs=125.3
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecChHHHHHHHhh
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
+.+....+ ++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+.+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--- 90 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGG-TIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHL--- 90 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEecccccchhhhhhHhhcEEEEecCCccCCCC---
Confidence 44455568 99999999999999999999999999888 444322111 111134689999997766544
Q ss_pred hhhHHHHHHhccccCC--cHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 197 GKFLEFASVHGNLYGT--SVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~--~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
++.+++.+....+.. ....+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+++.
T Consensus 91 -t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 169 (214)
T cd03297 91 -NVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ 169 (214)
T ss_pred -CHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 666776553222210 11122222222 11111111111222234556667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+.+.+.++.++. ..++++++|+++++...+++++.+.+|.++.
T Consensus 170 l~~~l~~~~~~~-------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 170 LLPELKQIKKNL-------NIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred HHHHHHHHHHHc-------CcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 999998875431 2388999999999988899999998887654
No 161
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.9e-19 Score=174.58 Aligned_cols=196 Identities=9% Similarity=0.027 Sum_probs=132.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC---------ccccccCCeeEEecChH--HHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA---------PRAMEKDGVHYHFTERS--VMEKAI 194 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~---------~~~~~~~~i~yvfq~~~--lf~~~~ 194 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+...... ........++|+||++. ++. .
T Consensus 30 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~- 106 (289)
T PRK13645 30 TSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG-QTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-E- 106 (289)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh-h-
Confidence 3344568999999999999999999999999999888 55432211 11112346899999863 232 2
Q ss_pred hhhhhHHHHHHhccccCCcHHHH----HHHHHc-CC-ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 195 KDGKFLEFASVHGNLYGTSVEAV----EAVADA-GK-RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~i----~~~~~~-g~-~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+....++...... ...++. ++ ....+..+..+....+++...+.+++.+|++++||||++++|+
T Consensus 107 ---tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~ 183 (289)
T PRK13645 107 ---TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183 (289)
T ss_pred ---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 56676665432223222222 222221 11 0011111222222345666677799999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
.+++.+.+.|.++.++. ..++++++|+++++...+++++.+.+|.++..+++.+++..+
T Consensus 184 ~~~~~l~~~l~~~~~~~-------~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 242 (289)
T PRK13645 184 KGEEDFINLFERLNKEY-------KKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQ 242 (289)
T ss_pred HHHHHHHHHHHHHHHhc-------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 99999999998865421 238899999999999999999999999988777666555443
No 162
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=7.3e-20 Score=172.27 Aligned_cols=197 Identities=14% Similarity=0.086 Sum_probs=132.1
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----ccccCCeeEEecChHHHHHHHhhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----AMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
....+....+|++++|+||||||||||+++|+|.+++..| .+........ ......++|+||+..+|+..
T Consensus 21 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~---- 95 (237)
T PRK11614 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSG-RIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM---- 95 (237)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc-eEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC----
Confidence 3333445569999999999999999999999999999888 5543322111 11234689999997766544
Q ss_pred hhHHHHHHhccccCCc--HHHHHHHHHcC--CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 198 KFLEFASVHGNLYGTS--VEAVEAVADAG--KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~--~~~i~~~~~~g--~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
++.+++.+........ ...+...++.. .....+-.+..+....+++...+.+++.+|++++||||++++|+.+++.
T Consensus 96 tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~ 175 (237)
T PRK11614 96 TVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ 175 (237)
T ss_pred cHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHH
Confidence 6677765532211110 11111111110 0000000111112223455666678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+.++++.++ ..++++++|+++++.+.+++++.+.+|.++..++++++..
T Consensus 176 l~~~l~~~~~~--------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 176 IFDTIEQLREQ--------GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHHHHHHHHC--------CCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99998876432 2488999999999999999999999999988887766654
No 163
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.3e-19 Score=172.34 Aligned_cols=201 Identities=14% Similarity=0.092 Sum_probs=133.7
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSV 189 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~l 189 (399)
.+..+.++...+|++++|+||||||||||+++|+|+++ +..| .+....... .......++|+||++.+
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G-~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKG-RVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 34444445567999999999999999999999999976 4667 454322111 11123458999999876
Q ss_pred HHHHHhhhhhHHHHHHhccccCCcH---HHHHHHHHcCCc-----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYGTSV---EAVEAVADAGKR-----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g~~~---~~i~~~~~~g~~-----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
|+ . ++.+++.+....++... +.+.+.++.... ..++-.+..+....++++..+.+++.+|++++|||
T Consensus 106 ~~-~----tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 180 (269)
T PRK14259 106 FP-K----SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDE 180 (269)
T ss_pred ch-h----hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 65 3 66777765433322221 222222222110 01111111222234556667779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC-----------CeeeecCCCccc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG-----------SIATNHQTSPKG 330 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~-----------~~~~~~~~~~~~ 330 (399)
|++++|+.+++.+.+.|.++.. ..++|+++|+++++...+++++.+.+ |+++..+++.++
T Consensus 181 Pt~gLD~~~~~~l~~~l~~~~~---------~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~ 251 (269)
T PRK14259 181 PCSALDPISTLKIEETMHELKK---------NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKI 251 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHhc---------CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHH
Confidence 9999999999999998887532 13889999999999999999999885 456666777777
Q ss_pred cCCCcc
Q 015825 331 IDLPAD 336 (399)
Q Consensus 331 ~~~p~~ 336 (399)
+..|..
T Consensus 252 ~~~~~~ 257 (269)
T PRK14259 252 FNSPKQ 257 (269)
T ss_pred HhCcCC
Confidence 666543
No 164
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.4e-19 Score=169.89 Aligned_cols=195 Identities=15% Similarity=0.147 Sum_probs=132.6
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+|+.+ ++.+++.+
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~e~l~~ 94 (232)
T PRK10771 20 LTVERGERVAILGPSGAGKSTLLNLIAGFLTPASG-SLTLNGQDHTTTPPSRRPVSMLFQENNLFSHL----TVAQNIGL 94 (232)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCeecCcCChhhccEEEEecccccccCC----cHHHHHhc
Confidence 34458999999999999999999999999999888 5544322111 11124689999998777654 67777755
Q ss_pred hccc-cCCc---HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 206 HGNL-YGTS---VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 206 ~~~~-~g~~---~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
.... .... ...+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.|.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~ 174 (232)
T PRK10771 95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ 174 (232)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 3211 1111 1122222222 111111111111222345556667789999999999999999999999999999988
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+..+. ..++|+++|+++++...+++++.+.+|++...+++.++...+
T Consensus 175 ~~~~~-------~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 175 VCQER-------QLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred HHHhc-------CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 65431 348899999999998889999999999888777666555544
No 165
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.76 E-value=2.1e-19 Score=155.61 Aligned_cols=199 Identities=14% Similarity=0.122 Sum_probs=143.5
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee------cCC----CccccccCCeeEEecChHHHHHHHhhh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH------TTR----APRAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~------ttr----~~~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
..-..|+.++++||||+|||||++.|.=+.-|..| .... ..+ ......+.++|++||.+.+|+++
T Consensus 23 l~~~~getlvllgpsgagkssllr~lnlle~p~sg-~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphl---- 97 (242)
T COG4161 23 LDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSG-TLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHL---- 97 (242)
T ss_pred ecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCC-eEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchh----
Confidence 33468999999999999999999999988888887 3321 111 11222345689999999999999
Q ss_pred hhHHHHH-HhccccCCcHHHHHHHHHcC-----CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 198 KFLEFAS-VHGNLYGTSVEAVEAVADAG-----KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 198 ~~~E~~~-~~~~~~g~~~~~i~~~~~~g-----~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
++.|++- ..-+..|.++++.+....+- +..+.|..|..+...+.++...+.+++..|.++++|||+.++||+-.
T Consensus 98 tv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeit 177 (242)
T COG4161 98 TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEIT 177 (242)
T ss_pred HHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHH
Confidence 8888864 33445677776655433221 11122222222233345666677799999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
.++-..++++.. -..|-||++|..+-|.+.+.+++-|.+|.++..|+. .-++.|..+..+
T Consensus 178 aqvv~iikel~~--------tgitqvivthev~va~k~as~vvyme~g~ive~g~a-~~ft~p~te~f~ 237 (242)
T COG4161 178 AQIVSIIKELAE--------TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA-SCFTEPQTEAFK 237 (242)
T ss_pred HHHHHHHHHHHh--------cCceEEEEEeehhHHHhhhhheEeeecCeeEeecch-hhccCccHHHHH
Confidence 888888887652 255889999999999999999999999999998874 356667655443
No 166
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1e-19 Score=173.52 Aligned_cols=202 Identities=12% Similarity=0.083 Sum_probs=134.7
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~ 191 (399)
..+.+....+|++++|+||||||||||+++|+|+.++ ..| .+....... .......++|+||+..+|+
T Consensus 20 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G-~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (258)
T PRK14241 20 VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG-EVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFP 98 (258)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcce-EEEECCEeccccccChHHHhcceEEEccccccCC
Confidence 3334455569999999999999999999999999864 477 554322111 1112346899999877665
Q ss_pred HHHhhhhhHHHHHHhccccCC-cHHHHH----HHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 192 KAIKDGKFLEFASVHGNLYGT-SVEAVE----AVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~-~~~~i~----~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
.+ ++.+++.+....++. ...... +.++. +.. ...+-.+..+....++++..+.+++.+|++++|||
T Consensus 99 ~~----tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 174 (258)
T PRK14241 99 TM----SIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDE 174 (258)
T ss_pred CC----cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 54 677777654322222 222222 22211 110 00111111122234556667779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc------CCeeeecCCCccccCCCc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD------GSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~------~~~~~~~~~~~~~~~~p~ 335 (399)
|++++|+.++..+.+.|.++.+ ..++|+++|+++++...+++++.+. +|+++..+++.+++..|.
T Consensus 175 Pt~~LD~~~~~~l~~~l~~~~~---------~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~~~~ 245 (258)
T PRK14241 175 PCSALDPISTLAIEDLINELKQ---------DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSNPT 245 (258)
T ss_pred CCccCCHHHHHHHHHHHHHHhc---------CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHhCcC
Confidence 9999999999999999987632 1388999999999999999998886 688888887777766554
Q ss_pred chh
Q 015825 336 DHS 338 (399)
Q Consensus 336 ~~~ 338 (399)
...
T Consensus 246 ~~~ 248 (258)
T PRK14241 246 QKA 248 (258)
T ss_pred cHH
Confidence 433
No 167
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.3e-19 Score=170.49 Aligned_cols=205 Identities=13% Similarity=0.076 Sum_probs=137.6
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC--C---cccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP--S---MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~--~---~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+..+.+....+|++++|+||||||||||+++|+|+++ + ..| .+....... .......++|+||++.+|
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14256 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTG-KILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCce-EEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence 3333445566999999999999999999999999975 3 457 554322111 111234689999997766
Q ss_pred HHHHhhhhhHHHHHHhccccCC-cHH----HHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT-SVE----AVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~-~~~----~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+.+ ++.+++.+....++. ... .+.+.++. +... .++..+..+....+++...+.+++.+|++++||
T Consensus 98 ~~~----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 173 (252)
T PRK14256 98 PAM----SIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMD 173 (252)
T ss_pred CcC----cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 654 667776543222221 111 12222222 1100 011111112223455566677899999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
||++++|+.+++.+.+.|+++.+. .++|+++|+++++...+++++.+.+|.+...+++.+++..|......
T Consensus 174 EP~~gLD~~~~~~l~~~l~~~~~~---------~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 244 (252)
T PRK14256 174 EPASALDPISTLKIEELIEELKEK---------YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPEKKQTE 244 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhC---------CcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCcHHHH
Confidence 999999999999999999886421 28899999999999999999999999998888877777776654443
No 168
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.3e-19 Score=173.50 Aligned_cols=200 Identities=15% Similarity=0.090 Sum_probs=134.6
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
.+..+.++...+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||+..+++.+
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~--- 100 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEG-EILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM--- 100 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC-EEEECCEehhhCCHHHHhhheEEeccCCCCCCCc---
Confidence 444445556679999999999999999999999999999888 554432111 111124589999987665544
Q ss_pred hhhHHHHHHhccc-c---CC-c---HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 197 GKFLEFASVHGNL-Y---GT-S---VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 197 ~~~~E~~~~~~~~-~---g~-~---~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.+++.+.... . +. . .+.+...++. +....++..+..+....+++...+.+++.+|++++||||++++|
T Consensus 101 -tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD 179 (265)
T PRK10575 101 -TVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179 (265)
T ss_pred -cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 666776553211 1 10 1 1122222222 11111111111222234555666779999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+++.+.+.|.++..+. ..++++++|+++++...+++++.+.+|.++..+++.++..
T Consensus 180 ~~~~~~~~~~l~~l~~~~-------~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 180 IAHQVDVLALVHRLSQER-------GLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 999999999999865431 3488999999999999999999999998887776655544
No 169
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.76 E-value=1.7e-19 Score=188.02 Aligned_cols=197 Identities=12% Similarity=0.079 Sum_probs=137.3
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----ccccCCeeEEecChHHHHHHHh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----AMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
.+....++...+|++++|+||||||||||+++|+|+++|..| .+........ .....+++|+||++.+++.+
T Consensus 25 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-- 101 (510)
T PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG-TLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL-- 101 (510)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHHHhCCEEEEeccCccCCCC--
Confidence 334444455679999999999999999999999999999888 5543322111 11123589999998766655
Q ss_pred hhhhHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 196 DGKFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
++.+++.+.........+.+.+.++. +.....+..+..+....++++..+.+|+.+|++++||||++++|+.+.+.+
T Consensus 102 --tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l 179 (510)
T PRK15439 102 --SVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERL 179 (510)
T ss_pred --cHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 77777765422111112223333332 221122222333333456677777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
.+.|+++.++ ..++|+++|+++++...+++++.+.+|.++..+++.+.
T Consensus 180 ~~~l~~~~~~--------g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 180 FSRIRELLAQ--------GVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999886432 23889999999999999999999999988876665544
No 170
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.75 E-value=2.1e-19 Score=168.62 Aligned_cols=186 Identities=16% Similarity=0.075 Sum_probs=127.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc-
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN- 208 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~- 208 (399)
..+|++++|+||||||||||+++|+|+.++..| .+........... ...+|+||++.+|+.+ ++.+++.+...
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~-~~~~~v~q~~~l~~~~----tv~e~l~~~~~~ 81 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSG-GVILEGKQITEPG-PDRMVVFQNYSLLPWL----TVRENIALAVDR 81 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCC-hhheEEecCcccCCCC----CHHHHHHHHHHh
Confidence 458999999999999999999999999999888 5544322111110 1147999987766654 67777655311
Q ss_pred -ccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 209 -LYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 209 -~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
..+..... +.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.++..+.+.|.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 161 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW 161 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 11222222 2222222 11111111222222334566667779999999999999999999999999999998865
Q ss_pred HHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 283 EEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
++. ..++++++|+++++...+++++.+.+|.++..+++.
T Consensus 162 ~~~-------~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 162 EEH-------RVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred Hhc-------CCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCce
Confidence 431 238899999999999999999999999888766543
No 171
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=2e-19 Score=173.39 Aligned_cols=196 Identities=13% Similarity=0.072 Sum_probs=134.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChH-HHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERS-VMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~-lf~~~~~~~~~~ 200 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+...... .......+++|+||++. .+... ++.
T Consensus 26 v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~----tv~ 100 (277)
T PRK13642 26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG-KVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA----TVE 100 (277)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC-EEEECCEECCcCCHHHHhcceEEEEECHHHhhccC----CHH
Confidence 3345569999999999999999999999999999888 55432211 11122346899999974 34433 677
Q ss_pred HHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
+++.+.....+...... ...++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~ 180 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 77765432223333222 222222 1111111112222223455666777999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.+.++.++. ..++++++|+++++. .+++++.+.+|.++..+++.+++..+
T Consensus 181 ~~l~~l~~~~-------g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 181 RVIHEIKEKY-------QLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHHHHHhc-------CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 9998875432 338999999999986 59999999999988877776665443
No 172
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.8e-19 Score=171.47 Aligned_cols=199 Identities=12% Similarity=0.088 Sum_probs=133.0
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
.+..+.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||+..+++.+
T Consensus 16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~--- 91 (255)
T PRK11231 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSG-TVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI--- 91 (255)
T ss_pred EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc-EEEECCEEhHHCCHHHHhhheEEecccCCCCCCc---
Confidence 334344455669999999999999999999999999999888 5544322211 11123589999987655443
Q ss_pred hhhHHHHHHhcc----ccCC-c---HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 197 GKFLEFASVHGN----LYGT-S---VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 197 ~~~~E~~~~~~~----~~g~-~---~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.+++.+... .++. . ...+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|
T Consensus 92 -tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 170 (255)
T PRK11231 92 -TVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170 (255)
T ss_pred -cHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 56666654311 1111 1 1122222222 11111111111222234555667779999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+++.+.+.|.++..+ ..++++++|+++++.+.+++++.+.+|.++..+++.++..
T Consensus 171 ~~~~~~l~~~l~~l~~~--------~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 171 INHQVELMRLMRELNTQ--------GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHHHHHHHHHHHHC--------CCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 99999999999876432 2388999999999999999999999998887776655543
No 173
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.75 E-value=4.7e-19 Score=184.39 Aligned_cols=196 Identities=11% Similarity=0.118 Sum_probs=136.1
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
.+....+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+++.+
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-- 94 (501)
T PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAG-SILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL-- 94 (501)
T ss_pred EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC--
Confidence 333334455668999999999999999999999999999888 554322111 111124589999998776655
Q ss_pred hhhhHHHHHHhcccc---C-CcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 196 DGKFLEFASVHGNLY---G-TSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~---g-~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
++.+++.+....+ + .... .+.+.++. +.....+-.+..+....+++...+.+|+.+|++++||||++++
T Consensus 95 --tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~L 172 (501)
T PRK10762 95 --TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDAL 172 (501)
T ss_pred --cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCC
Confidence 7778776643221 1 1111 22222222 1111222222233334566777788999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
|+.++..+.+.++++.++ ..++|+++||++++...+++++.+.+|.++..+++.+
T Consensus 173 D~~~~~~l~~~l~~l~~~--------~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 173 TDTETESLFRVIRELKSQ--------GRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred CHHHHHHHHHHHHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCc
Confidence 999999999999886432 2378999999999999999999999998877665544
No 174
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.3e-19 Score=191.21 Aligned_cols=202 Identities=17% Similarity=0.123 Sum_probs=139.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCC---------------Ccc---ccccCCeeEE
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR---------------APR---AMEKDGVHYH 183 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr---------------~~~---~~~~~~i~yv 183 (399)
+..+.++...+|++++|+||||||||||+++|+|++++..| .+..... ... ......++|+
T Consensus 31 ~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v 109 (623)
T PRK10261 31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGG-LVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI 109 (623)
T ss_pred EEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCe-EEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence 33444455679999999999999999999999999998777 4432110 000 0112358999
Q ss_pred ecCh--HHHHHHHhhhhhHHHHHHhccc-cCCcHHHHH----HHHHc-CCc---eEEecchhhHHHHHcCCcceeEEEEc
Q 015825 184 FTER--SVMEKAIKDGKFLEFASVHGNL-YGTSVEAVE----AVADA-GKR---CILDIDVQGARSVRASPLDAIFIFIC 252 (399)
Q Consensus 184 fq~~--~lf~~~~~~~~~~E~~~~~~~~-~g~~~~~i~----~~~~~-g~~---~vldld~~g~~~l~~~~~~~~~ili~ 252 (399)
||++ .+++.+ ++.+++.+.... .+....... +.++. +.. ..++..+..+....+|++..+.+|+.
T Consensus 110 ~Q~~~~~l~~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~ 185 (623)
T PRK10261 110 FQEPMTSLNPVF----TVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC 185 (623)
T ss_pred EeCchhhcCCCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhC
Confidence 9986 345544 677777654322 133332222 22222 110 01121222233345667777889999
Q ss_pred CCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 253 ~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+|++++||||++++|+.+++++.+.++++.++. ..++|+++||++.+...+++++.+.+|.++..+++.+++.
T Consensus 186 ~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~-------g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~ 258 (623)
T PRK10261 186 RPAVLIADEPTTALDVTIQAQILQLIKVLQKEM-------SMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFH 258 (623)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc-------CCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc
Confidence 999999999999999999999999999876442 2388999999999999999999999999988777777666
Q ss_pred CCc
Q 015825 333 LPA 335 (399)
Q Consensus 333 ~p~ 335 (399)
.|.
T Consensus 259 ~~~ 261 (623)
T PRK10261 259 APQ 261 (623)
T ss_pred CCC
Confidence 554
No 175
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.75 E-value=2.6e-19 Score=165.94 Aligned_cols=186 Identities=16% Similarity=0.118 Sum_probs=126.4
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
....+|++++|+||||||||||+++|+|+.++..| .+........ ......++|+||++.+|+.+ ++.+++.+
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~----t~~en~~~ 93 (213)
T TIGR01277 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASG-SIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL----TVRQNIGL 93 (213)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEcccCChhccceEEEeccCccCCCC----cHHHHHHh
Confidence 44568999999999999999999999999999888 5543221110 11234589999998777654 67777654
Q ss_pred hcc-ccCCc---HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 206 HGN-LYGTS---VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 206 ~~~-~~g~~---~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
... .+... ...+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|..+++.+.+.|.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 173 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQ 173 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 311 11111 1222222222 111111111122222345556666788999999999999999999999999999998
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecC
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQ 325 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~ 325 (399)
+.++. ..++++++|+++++...+++++.+.+|++...+
T Consensus 174 ~~~~~-------~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 174 LCSER-------QRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211 (213)
T ss_pred HHHhc-------CCEEEEEeCCHHHHHhhcCeEEEEECCeEEEec
Confidence 75431 248899999999998889999999988776543
No 176
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.9e-19 Score=169.65 Aligned_cols=200 Identities=15% Similarity=0.111 Sum_probs=134.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
.+....+|++++|+||||||||||+++|+|+.+ +..| .+....... ......+++|+||++.+|+ .
T Consensus 23 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G-~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~- 99 (251)
T PRK14251 23 ISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITG-EIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-F- 99 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcce-EEEECCEEcccccchHHHhhccEEEEecCCccCC-C-
Confidence 344556899999999999999999999999986 3567 554322211 1112346899999976663 2
Q ss_pred hhhhhHHHHHHhccccCCc-H----HHHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 195 KDGKFLEFASVHGNLYGTS-V----EAVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~-~----~~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
++.+++.+....++.. . ..+...++. +.. ..++..+..+....+++...+.+++.+|++++||||++
T Consensus 100 ---tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~ 176 (251)
T PRK14251 100 ---SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTS 176 (251)
T ss_pred ---cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCc
Confidence 6677765432222221 1 122222222 110 00111111222234556666778999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
++|+.+++.+.+.+.++.+ ..++++++|+++++...+++++.+.+|.+...+++.+++..|......
T Consensus 177 ~LD~~~~~~l~~~l~~~~~---------~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 243 (251)
T PRK14251 177 ALDPISSSEIEETLMELKH---------QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKKQITS 243 (251)
T ss_pred cCCHHHHHHHHHHHHHHHc---------CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhCCCCHHHH
Confidence 9999999999999987632 138899999999999999999999999998888777776666544433
No 177
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=2.6e-19 Score=172.05 Aligned_cols=196 Identities=12% Similarity=0.072 Sum_probs=131.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChH-HHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERS-VMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~-lf~~~~~~~~~~ 200 (399)
.+....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++. .|..+ ++.
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~----tv~ 102 (271)
T PRK13632 28 VSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG-EIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA----TVE 102 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc----cHH
Confidence 3344568999999999999999999999999999888 554322111 1112345899999974 34443 677
Q ss_pred HHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
+++.+.....+...... .+.++. +..-.++-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~ 182 (271)
T PRK13632 103 DDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK 182 (271)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 77765422222222222 222222 1111111111122223455566677999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.++++..+ +..++++++|+++++. .+++++.+.+|.+...+++.++...+
T Consensus 183 ~~l~~~~~~-------~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 183 KIMVDLRKT-------RKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHHHHHHHh-------cCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHhcCH
Confidence 999986542 1238899999998875 79999999999988777666555443
No 178
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.3e-19 Score=170.34 Aligned_cols=200 Identities=14% Similarity=0.091 Sum_probs=134.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC--C---cccceeeecCCCc------cccccCCeeEEecChHHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP--S---MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~--~---~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
.+....+|++++|+||||||||||+++|+|+.+ | ..| .+....... .......++|+||++.+|+ .
T Consensus 24 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~- 100 (252)
T PRK14239 24 VSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITG-SIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-M- 100 (252)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccc-eEEECCEECcCcccchHhhhhcEEEEecCCccCc-C-
Confidence 344556899999999999999999999999843 4 367 454322111 0112346899999987664 3
Q ss_pred hhhhhHHHHHHhccccCCc-HHH----HHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 195 KDGKFLEFASVHGNLYGTS-VEA----VEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~-~~~----i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
++.+++.+....++.. ... +...++. +.. ..++-.+..+....+++...+.+++.+|++++||||++
T Consensus 101 ---tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 177 (252)
T PRK14239 101 ---SIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTS 177 (252)
T ss_pred ---cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 6677766542222221 111 1112211 110 00111111122223455666678899999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
++|+.+++.+.+.|+++.. ..++++++|+++++...+++++.+.+|.+...+++.+++..|......
T Consensus 178 ~LD~~~~~~l~~~l~~~~~---------~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 244 (252)
T PRK14239 178 ALDPISAGKIEETLLGLKD---------DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKHKETE 244 (252)
T ss_pred ccCHHHHHHHHHHHHHHhh---------CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHH
Confidence 9999999999999987632 138899999999999999999999999998888888777777655444
No 179
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=3.2e-19 Score=170.21 Aligned_cols=204 Identities=13% Similarity=0.106 Sum_probs=136.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC--C---cccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP--S---MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~--~---~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+..+.+....+|++++|+||||||||||+++|+|.++ + ..| .+.....+. .......++|+||++.+|
T Consensus 27 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTG-EMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCce-EEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 3333445556999999999999999999999999986 2 367 443322111 111234689999997666
Q ss_pred HHHHhhhhhHHHHHHhccccCC-cHHH----HHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT-SVEA----VEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~-~~~~----i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+ . ++.+++.+....++. ..+. +.+.++. +... .++..+..+....+++...+.+++.+|++++||
T Consensus 106 ~-~----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllD 180 (259)
T PRK14274 106 P-Q----SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMD 180 (259)
T ss_pred c-c----CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4 2 566776554333332 2222 2222222 1110 111111122223455566677999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
||++++|+.++..+.+.|.++.+ ..++++++|+++.+...+++++.+.+|.+...+++.+++..|....+.
T Consensus 181 EPt~~LD~~~~~~l~~~l~~~~~---------~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 251 (259)
T PRK14274 181 EPTSALDPVSTRKIEELILKLKE---------KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQRTL 251 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHHhc---------CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCCCHHHH
Confidence 99999999999999999988642 138899999999999999999999999999888888777666544433
No 180
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.2e-19 Score=170.29 Aligned_cols=202 Identities=13% Similarity=0.085 Sum_probs=134.2
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHHHHH
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~ 192 (399)
.+.++...+|++++|+||||||||||+++|+|..++ ..| .+....... ....+..++|+||++.+|+
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~- 97 (250)
T PRK14240 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEG-EVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP- 97 (250)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEccccccchHHHhccEEEEecCCccCc-
Confidence 334455669999999999999999999999998652 467 554322111 1112345899999976665
Q ss_pred HHhhhhhHHHHHHhccccCC-cHHH----HHHHHHcCCc-----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 193 AIKDGKFLEFASVHGNLYGT-SVEA----VEAVADAGKR-----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~-~~~~----i~~~~~~g~~-----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
. ++.+++.+....++. .... +.+.++.... ..++-.+..+....+++...+.+++.+|++++||||
T Consensus 98 ~----t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 173 (250)
T PRK14240 98 M----SIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEP 173 (250)
T ss_pred c----cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3 666776654332332 1111 2222221110 000111111222345566677799999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
++++|+.++..+.+.|+++.. ..++++++|+++.+...+++++.+.+|.++..+++.++...|....+.
T Consensus 174 ~~~LD~~~~~~l~~~l~~~~~---------~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 242 (250)
T PRK14240 174 TSALDPISTLKIEELIQELKK---------DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNPKDKRTE 242 (250)
T ss_pred CccCCHHHHHHHHHHHHHHhc---------CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCChHHH
Confidence 999999999999988887531 138899999999999999999999999998877777666665544433
No 181
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.75 E-value=5.9e-19 Score=154.25 Aligned_cols=185 Identities=20% Similarity=0.168 Sum_probs=135.8
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-------cc-ccccCCeeEEecChHHHHHHHhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-------PR-AMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-------~~-~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
......+|+.++|+||||||||||+-.|+|+..+..| .++....+ .+ ......+|++||++.+.+.+
T Consensus 29 V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssG-eV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~l---- 103 (228)
T COG4181 29 VELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG-EVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL---- 103 (228)
T ss_pred ceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCc-eEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccc----
Confidence 3344568999999999999999999999999999999 66532211 11 12234689999999999988
Q ss_pred hhHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 198 KFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
+.+||+.....+.|.... ..++.+.. |+-..+.--|..+....+|++..+.+|...|++++.|||+.++|..+-+
T Consensus 104 tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~ 183 (228)
T COG4181 104 TALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183 (228)
T ss_pred hhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHH
Confidence 899999887777663322 22222222 3333333333333333456666777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
++...+=.+.++. ..|.|+||||..-|. .|+|.+.+..|+++.
T Consensus 184 ~iaDLlF~lnre~-------G~TlVlVTHD~~LA~-Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 184 KIADLLFALNRER-------GTTLVLVTHDPQLAA-RCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhhhc-------CceEEEEeCCHHHHH-hhhheeeeecceecc
Confidence 9988888777654 348999999986664 699999998887764
No 182
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.6e-19 Score=171.75 Aligned_cols=203 Identities=12% Similarity=0.064 Sum_probs=134.0
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+....+....+|++++|+||||||||||+++|+|+.+ +..| .+....... ......+++|+||++.+|
T Consensus 36 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 114 (268)
T PRK14248 36 AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEG-EILYEGLNILDSNINVVNLRREIGMVFQKPNPF 114 (268)
T ss_pred eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCce-EEEECCEEcccccccHHHHhccEEEEecCCccC
Confidence 3333444556999999999999999999999999764 4677 454322111 111234689999997666
Q ss_pred HHHHhhhhhHHHHHHhccccCCc-H----HHHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGTS-V----EAVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~~-~----~~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+ . ++.+++.+....++.. . ..+...+.. +... .++-.+..+....+++...+.+++.+|++++||
T Consensus 115 ~-~----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 189 (268)
T PRK14248 115 P-K----SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLD 189 (268)
T ss_pred c-c----cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 4 2 5666665432222211 1 112222221 1100 001111112222455666777999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
||++++|+.+++.+.+.++++.+ ..++++++|+++++...+++++.+.+|.++..+++.++...|.+..+
T Consensus 190 EPt~~LD~~~~~~l~~~l~~~~~---------~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 259 (268)
T PRK14248 190 EPASALDPISNAKIEELITELKE---------EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPKQQKT 259 (268)
T ss_pred CCCcccCHHHHHHHHHHHHHHhc---------CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChHH
Confidence 99999999999999999988642 13889999999999999999999999999888877777776655443
No 183
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=2.9e-19 Score=168.15 Aligned_cols=196 Identities=14% Similarity=0.147 Sum_probs=134.3
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||+..+|+.. ++.+++.
T Consensus 19 s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G-~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~----t~~e~l~ 93 (235)
T cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSG-KILLNGKDITNLPPEKRDISYVPQNYALFPHM----TVYKNIA 93 (235)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCEEcCcCChhHcCEEEEeecCccCCCc----cHHHHHH
Confidence 344568999999999999999999999999999888 5543221111 11134689999997766554 6677766
Q ss_pred HhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 205 VHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 205 ~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
+....++..... +.+.++. +....++-.+..+....+++...+.+++..|++++||||++++|+.+++.+.+.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 173 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHH
Confidence 543233322222 2222222 11111111111122234555666779999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
++..+. ..++++++|+++++...+++++.+.+|.++..+++.++...|
T Consensus 174 ~~~~~~-------~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 174 KIRKEF-------GVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HHHHhc-------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 865431 248899999999999899999999999888777666555554
No 184
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=3.6e-19 Score=170.11 Aligned_cols=205 Identities=12% Similarity=0.051 Sum_probs=137.5
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc-----ccceeeecCCC------ccccccCCeeEEecChHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRA------PRAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~-----~g~~i~~ttr~------~~~~~~~~i~yvfq~~~lf~ 191 (399)
..+.+....+|++++|+||||||||||+++|+|+.++. .| .+.....+ ........++|+||+..+|+
T Consensus 23 l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (261)
T PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEG-RVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP 101 (261)
T ss_pred eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccc-eEEECCEEhhccccchHHhhccEEEEecCCccCc
Confidence 33344555699999999999999999999999999874 45 33321111 11112346899999877665
Q ss_pred HHHhhhhhHHHHHHhccccCC-cHHH----HHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 192 KAIKDGKFLEFASVHGNLYGT-SVEA----VEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~-~~~~----i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
. ++.|++.+....++. +... +...++. +... .++-.+..+....+++...+.+++.+|++++|||
T Consensus 102 -~----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDE 176 (261)
T PRK14258 102 -M----SVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE 176 (261)
T ss_pred -c----cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4 667776553222222 2111 2222222 1100 1111111222234555666678999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC-----CeeeecCCCccccCCCcc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG-----SIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~-----~~~~~~~~~~~~~~~p~~ 336 (399)
|++++|+.+++.+.+.+.++..+. ..++++++|+++++...+++++.+.+ |.++..+++++++..|..
T Consensus 177 P~~~LD~~~~~~l~~~l~~l~~~~-------~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~~~~ 249 (261)
T PRK14258 177 PCFGLDPIASMKVESLIQSLRLRS-------ELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNSPHD 249 (261)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhC-------CCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHhCCCC
Confidence 999999999999999998865321 23889999999999999999999998 999888888888877765
Q ss_pred hhhh
Q 015825 337 HSVS 340 (399)
Q Consensus 337 ~~v~ 340 (399)
....
T Consensus 250 ~~~~ 253 (261)
T PRK14258 250 SRTR 253 (261)
T ss_pred HHHH
Confidence 4443
No 185
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=4.1e-19 Score=170.31 Aligned_cols=201 Identities=12% Similarity=0.031 Sum_probs=135.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+..+.+....+|++++|+||||||||||+++|+|+++ +..| .+....... ......+++|+||++.+|
T Consensus 35 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 113 (267)
T PRK14237 35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTG-QILYRGIDINRKEINVYEMRKHIGMVFQRPNPF 113 (267)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcce-EEEECCEEcccccCChHHHhcceEEEecCCccc
Confidence 3333445556999999999999999999999999986 3577 554322111 111234689999997666
Q ss_pred HHHHhhhhhHHHHHHhccccCC-cHHH----HHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT-SVEA----VEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~-~~~~----i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+ . ++.+++.+.....+. .... +.+.++. +.. ..++-.+..+....+++...+.+++..|++++||
T Consensus 114 ~-~----tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD 188 (267)
T PRK14237 114 A-K----SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMD 188 (267)
T ss_pred c-c----cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4 2 667776653222222 1211 2222222 110 0111111112223345566677999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcch
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADH 337 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~ 337 (399)
||++++|+.+.+.+.+.|.++.. ..++|+++|+++++...+++++.+.+|.++..+++.++...|...
T Consensus 189 EPt~~LD~~~~~~l~~~l~~~~~---------~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 256 (267)
T PRK14237 189 EPASALDPISTMQLEETMFELKK---------NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNPKLQ 256 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHhc---------CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCcH
Confidence 99999999999999999987632 127899999999999999999999999999888877776665433
No 186
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=3.6e-19 Score=168.77 Aligned_cols=203 Identities=14% Similarity=0.093 Sum_probs=134.5
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCC-----ccccccCCeeEEecChHHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRA-----PRAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~-----~~~~~~~~i~yvfq~~~lf 190 (399)
.+..+.+....+|++++|+||||||||||+++|+|+.++ ..| .+...... .......+++|+||++.+|
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITG-KLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCce-EEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 344444455679999999999999999999999999875 366 44432111 1112234689999998766
Q ss_pred HHHHhhhhhHHHHHHhccccCCc-HHHH----HHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGTS-VEAV----EAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~~-~~~i----~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+ . ++.+++.+....++.. .... .+.++. +... .++..+..+....++++..+.+++.+|++++||
T Consensus 96 ~-~----tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 170 (249)
T PRK14253 96 P-M----SIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMD 170 (249)
T ss_pred c-c----cHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 5 3 6667765532222211 1111 112211 1100 011111112223345566677899999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
||++++|+.+...+.+.|+++.++ .++++++|+++++...+++++.+.+|++...+++.++...|....
T Consensus 171 EP~~~LD~~~~~~l~~~l~~~~~~---------~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 239 (249)
T PRK14253 171 EPTSALDPIATHKIEELMEELKKN---------YTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPKDDR 239 (249)
T ss_pred CCCccCCHHHHHHHHHHHHHHhcC---------CeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCCChH
Confidence 999999999999999998886421 388999999999999999999999999988777666655554433
No 187
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=4e-19 Score=170.42 Aligned_cols=202 Identities=13% Similarity=0.104 Sum_probs=134.8
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSV 189 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~l 189 (399)
.+..+.+....+|++++|+||||||||||+++|+|+.++ ..| .+....... .......++|+||++.+
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTG-KITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCce-EEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 344444455679999999999999999999999999864 677 554322111 11123458999999766
Q ss_pred HHHHHhhhhhHHHHHHhccccCC--cHH----HHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYGT--SVE----AVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEE 258 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g~--~~~----~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lll 258 (399)
|+ . ++.+++.+....++. ... .+.+.++. +... .++-.+..+....+++...+.+++.+|++++
T Consensus 112 ~~-~----tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 186 (267)
T PRK14235 112 FP-K----SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVIL 186 (267)
T ss_pred CC-C----cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 54 2 566766554322221 111 12222222 1100 0111111222234556667779999999999
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcch
Q 015825 259 LEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADH 337 (399)
Q Consensus 259 LDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~ 337 (399)
||||++++|+.++..+.+.|+++.. ..++++++|+++.+...+++++.+.+|.++..+++.++...|...
T Consensus 187 LDEPt~~LD~~~~~~l~~~L~~l~~---------~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 256 (267)
T PRK14235 187 MDEPCSALDPIATAKVEELIDELRQ---------NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNPDDP 256 (267)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHhc---------CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCCH
Confidence 9999999999999999999987632 138899999999998889999999999988877766666555433
No 188
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.74 E-value=1.4e-19 Score=166.51 Aligned_cols=179 Identities=15% Similarity=0.123 Sum_probs=117.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecChHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~lf~~~ 193 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+....... ......+++|+||++.+|+.+
T Consensus 13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (206)
T TIGR03608 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSG-QVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENE 91 (206)
T ss_pred EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEccccchhhHHHHHHhCeeEEecchhhccCC
Confidence 33334455568999999999999999999999999999888 554432221 111234689999998777654
Q ss_pred HhhhhhHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 194 IKDGKFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+....++.... .+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+
T Consensus 92 ----t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~ 167 (206)
T TIGR03608 92 ----TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDP 167 (206)
T ss_pred ----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCH
Confidence 677777654332332222 22222322 111111111122222345566677799999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
.+++.+.+.++++.++ ..++++++|+++.. ..+++++
T Consensus 168 ~~~~~l~~~l~~~~~~--------~~tii~~sh~~~~~-~~~d~i~ 204 (206)
T TIGR03608 168 KNRDEVLDLLLELNDE--------GKTIIIVTHDPEVA-KQADRVI 204 (206)
T ss_pred HHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHH-hhcCEEE
Confidence 9999999999876432 23889999998753 4555543
No 189
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.74 E-value=6.3e-19 Score=168.10 Aligned_cols=199 Identities=14% Similarity=0.079 Sum_probs=130.2
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-----cc---cc-----ccCCeeEEecChH--H
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PR---AM-----EKDGVHYHFTERS--V 189 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-----~~---~~-----~~~~i~yvfq~~~--l 189 (399)
+.+....+|++++|+||||||||||+++|+|+++|..| .+...... .. .. ....++|+||++. +
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG-EVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGL 102 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCccccccccccCCHHHHHHHhhcceEEEeeCccccc
Confidence 34445569999999999999999999999999999888 55443322 11 00 1235899999863 2
Q ss_pred HHHHHhhhhhHHHHHHh----cc-ccCCcHHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 190 MEKAIKDGKFLEFASVH----GN-LYGTSVEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~----~~-~~g~~~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
+... ++.+++.+. .. .++.....+.+.++. +.. ..++-.+..+....+++...+.+++.+|++++||||
T Consensus 103 ~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEP 178 (258)
T PRK11701 103 RMQV----SAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEP 178 (258)
T ss_pred Cccc----cHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2222 223333221 10 011111122222222 110 011111111222345556667789999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
++++|+.+.+.+.+.++++..+. ..++|+++|+++.+...+++++.+.+|.++..+++.++...|.
T Consensus 179 t~~LD~~~~~~l~~~l~~~~~~~-------~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~ 244 (258)
T PRK11701 179 TGGLDVSVQARLLDLLRGLVREL-------GLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQ 244 (258)
T ss_pred cccCCHHHHHHHHHHHHHHHHhc-------CcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCC
Confidence 99999999999999998765431 2388999999999999999999999999988887777666554
No 190
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.74 E-value=5.5e-19 Score=185.10 Aligned_cols=203 Identities=13% Similarity=0.099 Sum_probs=137.8
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----c--cccCCeeEEecChH--HHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----A--MEKDGVHYHFTERS--VMEKA 193 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~--~~~~~i~yvfq~~~--lf~~~ 193 (399)
....+....+|++++|+||||||||||+++|+|+++ ..| .+....+... . .....++|+||++. +++.+
T Consensus 302 l~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G-~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~ 379 (529)
T PRK15134 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQG-EIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRL 379 (529)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCc-EEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcc
Confidence 333445567999999999999999999999999986 677 5543221110 0 11245899999863 44444
Q ss_pred HhhhhhHHHHHHhccccC--CcHH----HHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 194 IKDGKFLEFASVHGNLYG--TSVE----AVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g--~~~~----~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
++.+++.+....++ .... .+.+.++. +.. ...+-.+..+....++++..+.+++.+|++++||||+++
T Consensus 380 ----tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 455 (529)
T PRK15134 380 ----NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSS 455 (529)
T ss_pred ----cHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccc
Confidence 67777665322221 2221 22222322 110 011111222223345667777899999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
+|+.+++.+.+.|+++.++. ..++|+++||++.+...+++++.+.+|.++..+++.++++.|....
T Consensus 456 LD~~~~~~l~~~l~~~~~~~-------~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 521 (529)
T PRK15134 456 LDKTVQAQILALLKSLQQKH-------QLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEY 521 (529)
T ss_pred cCHHHHHHHHHHHHHHHHhh-------CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCCChH
Confidence 99999999999999876432 2388999999999999999999999999988887777776665443
No 191
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=3.3e-19 Score=171.85 Aligned_cols=207 Identities=13% Similarity=0.062 Sum_probs=139.1
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc-----cccccCCeeEEecChHH
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP-----RAMEKDGVHYHFTERSV 189 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~l 189 (399)
..+..+.++...+|++++|+||||||||||+++|+|++++ ..| .+....... .......++|+||++.+
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l 112 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSG-DVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP 112 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCce-EEEECCEEccccchhHHHhhheEEeccCCcc
Confidence 3444444455679999999999999999999999999875 467 554322111 11123468999999876
Q ss_pred HHHHHhhhhhHHHHHHhccccC-CcHHHHH----HHHHc-CCceE----EecchhhHHHHHcCCcceeEEEEcCCChHHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYG-TSVEAVE----AVADA-GKRCI----LDIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g-~~~~~i~----~~~~~-g~~~v----ldld~~g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
|+ . ++.+++.+...... ....... +.++. +.... ++-.+..+....+++...+.+++.+|++++|
T Consensus 113 ~~-~----tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllL 187 (276)
T PRK14271 113 FP-M----SIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLL 187 (276)
T ss_pred CC-c----cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 65 3 56666654321111 1222221 22222 11100 1111112222345566677799999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
|||++++|..+++.+.+.|.++.++ .++|+++|+++++...+++++.+.+|.++..+++.++...|.....
T Consensus 188 DEPt~~LD~~~~~~l~~~L~~~~~~---------~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~ 258 (276)
T PRK14271 188 DEPTSALDPTTTEKIEEFIRSLADR---------LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAET 258 (276)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhcC---------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCcHHH
Confidence 9999999999999998888876421 3899999999999999999999999999888888877777765544
Q ss_pred hc
Q 015825 340 SK 341 (399)
Q Consensus 340 ~~ 341 (399)
..
T Consensus 259 ~~ 260 (276)
T PRK14271 259 AR 260 (276)
T ss_pred HH
Confidence 43
No 192
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.74 E-value=4.3e-19 Score=169.60 Aligned_cols=196 Identities=12% Similarity=0.113 Sum_probs=131.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcc---cceeeecCCCcc---------ccccCCeeEEecChHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMF---GFSVSHTTRAPR---------AMEKDGVHYHFTERSV 189 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~---g~~i~~ttr~~~---------~~~~~~i~yvfq~~~l 189 (399)
+..+.+....+|++++|+||||||||||+++|+|.+++.. | .+........ .....+++|+||++.+
T Consensus 19 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (262)
T PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGS-HIELLGRTVQREGRLARDIRKSRANTGYIFQQFNL 97 (262)
T ss_pred EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCce-EEEECCEecccccccchhHHHHHhheEEEcccccc
Confidence 3333445556999999999999999999999999998753 6 4443221110 1113458999999877
Q ss_pred HHHHHhhhhhHHHHHHhccc--------cCC-c---HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCCh
Q 015825 190 MEKAIKDGKFLEFASVHGNL--------YGT-S---VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSM 256 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~--------~g~-~---~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~l 256 (399)
|+.+ ++.+++.+.... ++. . ...+.+.++. +.....+..+..+....+++...+.+++..|++
T Consensus 98 ~~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 173 (262)
T PRK09984 98 VNRL----SVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKV 173 (262)
T ss_pred ccCC----cHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCE
Confidence 6654 677776543210 011 1 1122222222 111111111222222345556667789999999
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 257 EELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 257 llLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
++||||++++|..+.+.+.+.|+++..+. ..++|+++|+++++...+++++.+.+|.+...+++.+
T Consensus 174 lllDEPt~~LD~~~~~~l~~~l~~~~~~~-------g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 174 ILADEPIASLDPESARIVMDTLRDINQND-------GITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred EEecCccccCCHHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999875431 2388999999999999999999999998887777655
No 193
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=4.5e-19 Score=168.29 Aligned_cols=201 Identities=13% Similarity=0.129 Sum_probs=134.5
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhc---cCC--cccceeeecCCCc------cccccCCeeEEecChHHHHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKE---FPS--MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~---~~~--~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~ 193 (399)
..+....+|++++|+||||||||||+++|+|+ .++ ..| .+.....+. ......+++|+||++.+|+ .
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 98 (250)
T PRK14245 21 GISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEG-EIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-K 98 (250)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCce-EEEECCEecccccccHHHHhhheEEEecCCccCc-c
Confidence 33445568999999999999999999999986 344 367 454322111 1112346899999976654 2
Q ss_pred HhhhhhHHHHHHhccccCCc-H----HHHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 194 IKDGKFLEFASVHGNLYGTS-V----EAVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~-~----~~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.+++.+....++.. . ..+.+.++. +... .++-.+..+....+++...+.+++.+|++++||||+
T Consensus 99 ----tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 174 (250)
T PRK14245 99 ----SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174 (250)
T ss_pred ----cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 5666665432222211 1 122223322 1110 011111122223455566677899999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
+++|+.+++.+.+.|+++.+ ..++++++|+++++...+++++.+.+|.++..+++.++...|......
T Consensus 175 ~~LD~~~~~~l~~~l~~~~~---------~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~~~~~~~~ 242 (250)
T PRK14245 175 SALDPISTAKVEELIHELKK---------DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQ 242 (250)
T ss_pred ccCCHHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcCCCChHHH
Confidence 99999999999999988631 238899999999999999999999999999888888887776554443
No 194
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.74 E-value=1.6e-17 Score=143.67 Aligned_cols=120 Identities=58% Similarity=0.918 Sum_probs=111.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCcH
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSV 214 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~~ 214 (399)
+++|+||||||||||++.|++.++..++..++|+||+++..+.++..|+|.+...|..+...+.|.++..+.++.||.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 47899999999999999999998777777888999999988888999999999999988888899999999999999999
Q ss_pred HHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCC
Q 015825 215 EAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPP 254 (399)
Q Consensus 215 ~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P 254 (399)
..+.+..+.++.++++++.++...++...+....+|+.+|
T Consensus 81 ~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~ 120 (137)
T cd00071 81 AAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP 120 (137)
T ss_pred HHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeEEEEEECC
Confidence 9999999999999999999999999998889999999987
No 195
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=8.1e-19 Score=182.87 Aligned_cols=198 Identities=14% Similarity=0.109 Sum_probs=137.4
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC--cccceeeecCCCc-----cccccCCeeEEecChHHHHH
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS--MFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~--~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~ 192 (399)
..+....+....+|++++|+||||||||||+++|+|++++ ..| .+....... ......+++|+||++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEG-EIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCe-EEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 3344444455679999999999999999999999999986 677 554322111 11113468999999877665
Q ss_pred HHhhhhhHHHHHHhcccc--C-CcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 193 AIKDGKFLEFASVHGNLY--G-TSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~--g-~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
+ ++.+++.+....+ + ...+ .+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++
T Consensus 97 ~----tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~ 172 (506)
T PRK13549 97 L----SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTA 172 (506)
T ss_pred C----cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 5 7778776643221 1 1222 22233322 11112222233333345677778889999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
++|+.++..+.+.|.++.++ ..++|+++|+++.+...+++++.+.+|.++..+++.++
T Consensus 173 ~LD~~~~~~l~~~l~~l~~~--------~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 173 SLTESETAVLLDIIRDLKAH--------GIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred CCCHHHHHHHHHHHHHHHHC--------CCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 99999999999999887421 23789999999999999999999999988877665543
No 196
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=4.7e-19 Score=168.19 Aligned_cols=203 Identities=12% Similarity=0.088 Sum_probs=134.7
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc-----ccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~-----~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+..+.++...+|++++|+||||||||||+++|+|.+++. .| .+....... ......+++|+||++.+|
T Consensus 19 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14272 19 AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTG-RILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF 97 (252)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCce-eEEECCEEcccCccCHHHhhceeEEEeccCccC
Confidence 333344556699999999999999999999999998753 56 444322111 111234689999997766
Q ss_pred HHHHhhhhhHHHHHHhccccCC-cHHHHHHH----HHcC-Cc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT-SVEAVEAV----ADAG-KR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~-~~~~i~~~----~~~g-~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+.. ++.+++.+.....+. ......+. +... .. ...+..+..+....+++...+.+++.+|++++||
T Consensus 98 ~~~----t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 173 (252)
T PRK14272 98 PTM----SVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMD 173 (252)
T ss_pred cCC----CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 554 667776543222221 12211111 1111 00 0011111112222345566677999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
||++++|+.+++.+.+.|+++.+ ..++++++|+++.+...+++++.+.+|.++..+++.++...|....
T Consensus 174 EP~~~LD~~~~~~l~~~l~~~~~---------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 242 (252)
T PRK14272 174 EPTSALDPASTARIEDLMTDLKK---------VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRDER 242 (252)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCcHH
Confidence 99999999999999999887642 1388999999999998999999999999988887777766665433
No 197
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=4.6e-19 Score=167.87 Aligned_cols=202 Identities=14% Similarity=0.097 Sum_probs=135.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC---CcccceeeecCCC----ccccccCCeeEEecChHHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP---SMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~---~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+..+.+....+|++++|+||||||||||+++|+|+++ +..| .+...... ........++|+||++.+|+ .
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~- 93 (246)
T PRK14269 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDG-LVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K- 93 (246)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCce-EEEECCEecccCCHHHHhhhEEEEecCCcccc-c-
Confidence 3333445556999999999999999999999999874 5677 55432211 11122346899999987764 3
Q ss_pred hhhhhHHHHHHhccccCC--cHH----HHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 195 KDGKFLEFASVHGNLYGT--SVE----AVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~--~~~----~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.+++.+....++. ... .+.+.++. +.. ..++-.+..+....+++...+.+++.+|++++||||+
T Consensus 94 ---tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 170 (246)
T PRK14269 94 ---SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPT 170 (246)
T ss_pred ---cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 677777654322221 111 12222222 110 0011111112223455566677999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
+++|+.++..+.+.|.++.. ..++++++|+++++...+++++.+.+|+++..+++.+++..|....
T Consensus 171 ~~LD~~~~~~l~~~l~~~~~---------~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 236 (246)
T PRK14269 171 SALDPISSGVIEELLKELSH---------NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEK 236 (246)
T ss_pred ccCCHHHHHHHHHHHHHHhC---------CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCCCcHH
Confidence 99999999999888887531 2388999999999999999999999999998887777766554333
No 198
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=3.3e-19 Score=171.34 Aligned_cols=199 Identities=14% Similarity=0.130 Sum_probs=133.6
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHHHHHHh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
+....+|++++|+|+||||||||+++|+|+++ +..| .+.....+. .......++|+||++.+|+ .
T Consensus 44 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~-- 119 (271)
T PRK14238 44 NLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTG-KILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP-K-- 119 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCce-eEEECCEEcccccccHHHHhhhEEEEecCCcccc-c--
Confidence 34456899999999999999999999999986 4677 454322111 1111346899999977664 2
Q ss_pred hhhhHHHHHHhccccCCc-HHHH----HHHHHcCCc--eE---EecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 196 DGKFLEFASVHGNLYGTS-VEAV----EAVADAGKR--CI---LDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~-~~~i----~~~~~~g~~--~v---ldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
++.+++.+....++.. .... .+.+..... .+ ++-.+..+....+++...+.+++.+|++++||||+++
T Consensus 120 --tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~ 197 (271)
T PRK14238 120 --SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSA 197 (271)
T ss_pred --cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 5667766532222221 1111 111211100 00 0111111222234556667789999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
+|+.+...+.+.|.++.+ ..++++++|+++++...+++++.+.+|.+...+++.+++..|......
T Consensus 198 LD~~~~~~l~~~l~~~~~---------~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 263 (271)
T PRK14238 198 LDPISTLKVEELVQELKK---------DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPSDKRTE 263 (271)
T ss_pred CCHHHHHHHHHHHHHHHc---------CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCCCHHHH
Confidence 999999999998887642 138899999999999999999999999998888877777776554433
No 199
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=3.7e-19 Score=168.96 Aligned_cols=201 Identities=14% Similarity=0.083 Sum_probs=135.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc-----ccceeeecCCCc------cccccCCeeEEecChHHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~-----~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
.+....+|++++|+||||||||||+++|+|++++. .| .+....... .......++|+||++.+|+ .
T Consensus 23 ~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~- 99 (251)
T PRK14249 23 INMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEG-AVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP-K- 99 (251)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCccc-EEEECCEEccccccChHHhhceEEEEecCCccCc-C-
Confidence 33455689999999999999999999999999876 36 443321111 0111346899999987664 2
Q ss_pred hhhhhHHHHHHhccccCCcH-H----HHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 195 KDGKFLEFASVHGNLYGTSV-E----AVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~-~----~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
++.+++.+....++... + .+...+.. +.. -.++-.+..+....+++...+.+++.+|++++||||++
T Consensus 100 ---tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~ 176 (251)
T PRK14249 100 ---SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCS 176 (251)
T ss_pred ---cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 56677665433222221 1 11111111 110 00111111122223455666679999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
++|+.+.+.+.+.|.++. + ..++++++|+++.+...+++++.+.+|.+...+++.++...|....+..
T Consensus 177 ~LD~~~~~~l~~~l~~~~-~--------~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 244 (251)
T PRK14249 177 ALDPVSTMRIEELMQELK-Q--------NYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPRDKRTED 244 (251)
T ss_pred cCCHHHHHHHHHHHHHHh-c--------CCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhCCCChHHHH
Confidence 999999999988888753 1 2389999999999999999999999999988888777777776655443
No 200
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.74 E-value=7.7e-19 Score=164.03 Aligned_cols=189 Identities=14% Similarity=0.106 Sum_probs=128.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc--
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN-- 208 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~-- 208 (399)
.+|++++|+||||||||||+++|+|.+++..| .+.....+... ....++|+||++.++... ..++.+++.+...
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~--~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKG-TVKVAGASPGK-GWRHIGYVPQRHEFAWDF--PISVAHTVMSGRTGH 79 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCccchH-hhCcEEEecccccccCCC--CccHHHHHHhccccc
Confidence 47999999999999999999999999999888 66554433221 234589999987543211 1155566544311
Q ss_pred --ccCCc----HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHH
Q 015825 209 --LYGTS----VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (399)
Q Consensus 209 --~~g~~----~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~ 281 (399)
.+... ...+...++. +.....+-.+..+....+++...+.+++.+|+++++|||++++|+.+++.+.+.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~ 159 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 11111 1223333332 2211222222223333456667777999999999999999999999999999999876
Q ss_pred HHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 282 KEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 282 ~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
.++ ..++++++|+++++...+++++.+ +|+++..+++.++..
T Consensus 160 ~~~--------~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 160 AGA--------GTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHc--------CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 532 238899999999999889998888 788887776665543
No 201
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=4.7e-19 Score=168.28 Aligned_cols=203 Identities=16% Similarity=0.098 Sum_probs=135.0
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC--C---cccceeeecCCCc------cccccCCeeEEecChHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP--S---MFGFSVSHTTRAP------RAMEKDGVHYHFTERSV 189 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~--~---~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~l 189 (399)
.+..+.+....+|++++|+||||||||||+++|+|..+ + ..| .+....... .......++|+||++.+
T Consensus 19 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITG-NVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCccc-EEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 34444445567999999999999999999999999864 3 367 444322111 11123468999999776
Q ss_pred HHHHHhhhhhHHHHHHhccccCC-cHH----HHHHHHHc-CCc-e---EEecchhhHHHHHcCCcceeEEEEcCCChHHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYGT-SVE----AVEAVADA-GKR-C---ILDIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g~-~~~----~i~~~~~~-g~~-~---vldld~~g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
|+ . ++.+++.+....++. ..+ .+.+.++. +.. . .++..+..+....+++...+.+++.+|++++|
T Consensus 98 ~~-~----tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 172 (252)
T PRK14255 98 FP-F----SIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILL 172 (252)
T ss_pred CC-C----cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 65 3 566666553222221 111 11111211 110 0 01111111222345556667799999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
|||++++|+.+++.+.+.|+++.++ .++|+++|+++++...+++++.+.+|.++..+++.+.+..|....
T Consensus 173 DEPt~~LD~~~~~~l~~~l~~~~~~---------~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 242 (252)
T PRK14255 173 DEPTSALDPISSTQIENMLLELRDQ---------YTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKEKE 242 (252)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHhC---------CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCChH
Confidence 9999999999999999999886421 388999999999999999999999999988888777777765443
No 202
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=5.5e-19 Score=169.16 Aligned_cols=204 Identities=12% Similarity=0.090 Sum_probs=134.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+....+....+|++++|+||||||||||+++|+|+.. +..| .+....... .......++|+||++.+|
T Consensus 25 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 103 (264)
T PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEG-KVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPF 103 (264)
T ss_pred EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCce-EEEECCEEccccccChHHHhhhEEEEccCCccc
Confidence 3344445567999999999999999999999999865 2567 444322111 111234589999987666
Q ss_pred HHHHhhhhhHHHHHHhccccCCc---HHHHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGTS---VEAVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~~---~~~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
+ . ++.+++.+.....+.. .+.+...++. +... ..+..+..+....+++...+.+++.+|++++||||
T Consensus 104 ~-~----tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 178 (264)
T PRK14243 104 P-K----SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEP 178 (264)
T ss_pred c-c----cHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4 2 5666665532221111 1112222221 1100 01111111222345556667789999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc---------CCeeeecCCCccccCC
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD---------GSIATNHQTSPKGIDL 333 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~---------~~~~~~~~~~~~~~~~ 333 (399)
++++|+.+++.+.+.|.++.++ .++|+++|+++++...+++++.+. .|.++..+++.+++..
T Consensus 179 t~~LD~~~~~~l~~~L~~~~~~---------~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~~~ 249 (264)
T PRK14243 179 CSALDPISTLRIEELMHELKEQ---------YTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNS 249 (264)
T ss_pred CccCCHHHHHHHHHHHHHHhcC---------CEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhC
Confidence 9999999999999999876421 388999999999999999999887 6888888888888777
Q ss_pred Ccchhhh
Q 015825 334 PADHSVS 340 (399)
Q Consensus 334 p~~~~v~ 340 (399)
|......
T Consensus 250 ~~~~~~~ 256 (264)
T PRK14243 250 PQQQATR 256 (264)
T ss_pred CCcHHHH
Confidence 7654433
No 203
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.74 E-value=7.3e-19 Score=167.32 Aligned_cols=198 Identities=11% Similarity=0.105 Sum_probs=131.4
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC----cccceeeecCCCc--cccccCCeeEEecChH-HHHHHHhhhhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS----MFGFSVSHTTRAP--RAMEKDGVHYHFTERS-VMEKAIKDGKF 199 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~----~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~-lf~~~~~~~~~ 199 (399)
+....+|++++|+||||||||||+++|+|+.++ ..| .+.....+. .......++|+||++. .|.... ++
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G-~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~---~~ 98 (254)
T PRK10418 23 SLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAG-RVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH---TM 98 (254)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCC-EEEECCeeccccccccceEEEEecCCccccCccc---cH
Confidence 345569999999999999999999999999988 778 554322211 1111245899999864 232111 34
Q ss_pred HHHHHHhccccCCcH--HHHHHHHHc-CCce---EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 200 LEFASVHGNLYGTSV--EAVEAVADA-GKRC---ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~--~~i~~~~~~-g~~~---vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
.++..+....++... ..+.+.++. +... +++-.+..+....+++...+.+++.+|++++||||++++|+.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~ 178 (254)
T PRK10418 99 HTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQAR 178 (254)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHH
Confidence 444332211122221 223333332 1110 1111111222234556667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+.+.|+++.++. ..++++++|+++++...+++++.+.+|.+...+++.++...|.
T Consensus 179 l~~~L~~~~~~~-------g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 233 (254)
T PRK10418 179 ILDLLESIVQKR-------ALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPK 233 (254)
T ss_pred HHHHHHHHHHhc-------CcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCCC
Confidence 999998865431 2388999999999999999999999999988887777766554
No 204
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.74 E-value=4.7e-19 Score=168.76 Aligned_cols=198 Identities=13% Similarity=0.099 Sum_probs=132.6
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
+....+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|++|++..+..+
T Consensus 16 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~---- 90 (256)
T TIGR03873 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAG-TVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL---- 90 (256)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCC-EEEECCEEcccCCHHHHhhheEEecccCccCCCC----
Confidence 33334445569999999999999999999999999999888 554322111 111123589999987544433
Q ss_pred hhHHHHHHhcc----ccCCc----HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 198 KFLEFASVHGN----LYGTS----VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 198 ~~~E~~~~~~~----~~g~~----~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+... .++.. .+.+.+.++. +.....+-.+..+....+++...+.+++..|++++||||++++|+
T Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 170 (256)
T TIGR03873 91 TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDV 170 (256)
T ss_pred CHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 67777655321 11111 1122222322 111111111112222344556667789999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
.+...+.+.|+++.++ ..++++++|+++.+...+++++.+.+|.++..+++.++..
T Consensus 171 ~~~~~l~~~l~~~~~~--------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 171 RAQLETLALVRELAAT--------GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999886532 2388999999999999999999999999888777665543
No 205
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.74 E-value=7.3e-19 Score=183.35 Aligned_cols=197 Identities=14% Similarity=0.108 Sum_probs=136.2
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
.+....++...+|++++|+||||||||||+++|+|+.+|..| .+....... ......+++|+||++.+++.+
T Consensus 19 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~-- 95 (510)
T PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKG-TITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL-- 95 (510)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCcc-EEEECCEECCCCCHHHHHHCCeEEEeecccccCCC--
Confidence 334444455679999999999999999999999999999888 554322111 111124589999997766654
Q ss_pred hhhhHHHHHHhcc----ccCC---cHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 196 DGKFLEFASVHGN----LYGT---SVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 196 ~~~~~E~~~~~~~----~~g~---~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.+++.+... .++. ... .+.+.++. +.....+-.+..+....++++..+.+++.+|++++||||+
T Consensus 96 --tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt 173 (510)
T PRK09700 96 --TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPT 173 (510)
T ss_pred --cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 67777655321 1221 111 22222222 1111122222333334566777788999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
+++|+.++..+.+.|+++.++ ..++|+++||++.+...+++++.+.+|.++..+++.++
T Consensus 174 ~~LD~~~~~~l~~~l~~l~~~--------g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 174 SSLTNKEVDYLFLIMNQLRKE--------GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred CCCCHHHHHHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999999999999987532 23889999999999999999999999988777665544
No 206
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.73 E-value=1.1e-18 Score=165.93 Aligned_cols=201 Identities=13% Similarity=0.099 Sum_probs=130.6
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-----cc---c-----cccCCeeEEecChHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PR---A-----MEKDGVHYHFTERSV 189 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-----~~---~-----~~~~~i~yvfq~~~l 189 (399)
..+.+....+|++++|+||||||||||+++|+|+.++..| .+.....+ .. . ....+++|+||++..
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (253)
T TIGR02323 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHG-TATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRD 97 (253)
T ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEEecccccccccccCCHHHHHHhhhcceEEEEeCccc
Confidence 3334455669999999999999999999999999999888 55443221 10 0 012458999998632
Q ss_pred --HHHHHhhhhhHHHHHHh----c-cccCCcHHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 190 --MEKAIKDGKFLEFASVH----G-NLYGTSVEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 190 --f~~~~~~~~~~E~~~~~----~-~~~g~~~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+... ++.+++.+. . ..+......+.+.++. +.. ..++..+..+....+++...+.+++.+|++++||
T Consensus 98 ~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllD 173 (253)
T TIGR02323 98 GLRMRV----SAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMD 173 (253)
T ss_pred ccCccc----cHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 1111 222332211 0 0111111222222222 110 0111112222223456667777999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
||++++|+.+++.+.+.+.++..+. ..++|+++|+++++...+++++.+.+|.++..+++.++...|.
T Consensus 174 EP~~~LD~~~~~~l~~~l~~~~~~~-------~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~~~ 241 (253)
T TIGR02323 174 EPTGGLDVSVQARLLDLLRGLVRDL-------GLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQ 241 (253)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcCCC
Confidence 9999999999999999998765431 2388999999999998999999999999988777766665543
No 207
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=5.9e-19 Score=174.02 Aligned_cols=202 Identities=13% Similarity=0.075 Sum_probs=140.6
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCcc------ccccCCeeEEecChHHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAPR------AMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~~------~~~~~~i~yvfq~~~lf~~~~ 194 (399)
.+....+|++++|+||||||||||+++|+|+.+ +..| .+........ ...+..++|+||++.+|.
T Consensus 101 is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G-~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~--- 176 (329)
T PRK14257 101 LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEG-EIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE--- 176 (329)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEccccccchHhhhccEEEEecCCccCC---
Confidence 334556999999999999999999999999985 3467 4443222111 112346899999987663
Q ss_pred hhhhhHHHHHHhccccCCcHHH-----HHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 195 KDGKFLEFASVHGNLYGTSVEA-----VEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~-----i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
+++.+++.|.....+..... +...++. ++.. .++-....+...+++++..+.+++..|++++||||++
T Consensus 177 --~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts 254 (329)
T PRK14257 177 --MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS 254 (329)
T ss_pred --CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 27778887643322222221 2222222 1100 0111111122234566667779999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcc
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKV 342 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~ 342 (399)
++|+.+...+++.|+.+.+ .+++++++|+++.+.+.+++++.+.+|.++..+++.+++..|....+..+
T Consensus 255 ~LD~~~~~~i~~~i~~l~~---------~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~~~~~~~~ 323 (329)
T PRK14257 255 ALDPIATAKIEELILELKK---------KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKRTKDY 323 (329)
T ss_pred cCCHHHHHHHHHHHHHHhc---------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCcHHHHHH
Confidence 9999999999998887532 24899999999999988999999999999999999999999887665543
No 208
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.73 E-value=1.1e-18 Score=164.69 Aligned_cols=195 Identities=13% Similarity=0.075 Sum_probs=128.6
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc--CCcccceeeecCCCc-----cccccCCeeEEecChHHHHHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~--~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~ 193 (399)
.+..+.+....+|++++|+||||||||||+++|+|+. ++..| .+....... ......+++|+||++.+++.+
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSG-TILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc-eEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 3344444556799999999999999999999999995 67788 554322211 111123478999998776654
Q ss_pred HhhhhhHHHHHHhccccC-------CcH----HHHHHHHHc-CCc-eEEecchh-hHHHHHcCCcceeEEEEcCCChHHH
Q 015825 194 IKDGKFLEFASVHGNLYG-------TSV----EAVEAVADA-GKR-CILDIDVQ-GARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g-------~~~----~~i~~~~~~-g~~-~vldld~~-g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
++.+++.+....+. ... +.+.+.++. +.. ...+..+. .+....+++...+.+++.+|++++|
T Consensus 93 ----t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 168 (243)
T TIGR01978 93 ----SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAIL 168 (243)
T ss_pred ----CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 55555443211110 111 112222222 111 11111111 1333345666677799999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHH-HHHhhcccCCeeeecCCCc
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN-LKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~-l~~ii~~~~~~~~~~~~~~ 328 (399)
|||++++|+.+++.+.+.|.++.++ ..++++++|+++.+... +++++.+.+|.++..+++.
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~~--------~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 169 DEIDSGLDIDALKIVAEGINRLREP--------DRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHC--------CcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 9999999999999999999886431 23889999999999887 7999999999887766554
No 209
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=5.8e-19 Score=167.47 Aligned_cols=198 Identities=14% Similarity=0.078 Sum_probs=132.7
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~ 191 (399)
....+....+|++++|+||||||||||+++|+|+.++ ..| .+....... .......++|+||++.+|+
T Consensus 19 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14262 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEG-KIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP 97 (250)
T ss_pred EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcce-EEEECCEEcccchhhHHHhhhhEEEEecCCccCc
Confidence 3334455669999999999999999999999999863 567 454322111 1112346899999977665
Q ss_pred HHHhhhhhHHHHHHhccccCC-cHHH----HHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 192 KAIKDGKFLEFASVHGNLYGT-SVEA----VEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~-~~~~----i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
. ++.+++.+....++. .... +...++. +... ..+..+..+....+++...+.+++.+|++++|||
T Consensus 98 -~----tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDE 172 (250)
T PRK14262 98 -M----SIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDE 172 (250)
T ss_pred -c----cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3 666776553222222 1111 2222221 1100 0111111122224556667779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
|++++|+.++..+.+.|.++.+ ..++++++|+++.+...+++++.+.+|.++..+++.++...|.
T Consensus 173 P~~~LD~~~~~~l~~~l~~~~~---------~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 237 (250)
T PRK14262 173 PTSALDPIATQRIEKLLEELSE---------NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPK 237 (250)
T ss_pred CccccCHHHHHHHHHHHHHHhc---------CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCCC
Confidence 9999999999999999987642 1388999999999999999999999999988887776665553
No 210
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.73 E-value=6.6e-19 Score=184.10 Aligned_cols=198 Identities=12% Similarity=0.006 Sum_probs=132.0
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc--CCcccceeeec-----------------------CC-----
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSHT-----------------------TR----- 170 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~--~~~~g~~i~~t-----------------------tr----- 170 (399)
.+....+....+|++++|+||||||||||+++|+|+. ++..| .+... ..
T Consensus 14 ~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G-~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 92 (520)
T TIGR03269 14 EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG-RIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE 92 (520)
T ss_pred EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCce-EEEEecccccccccccccccccccccccccccccc
Confidence 3333344556799999999999999999999999996 57777 44321 00
Q ss_pred -----C-c---cccccCCeeEEecC-hHHHHHHHhhhhhHHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhh
Q 015825 171 -----A-P---RAMEKDGVHYHFTE-RSVMEKAIKDGKFLEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQG 235 (399)
Q Consensus 171 -----~-~---~~~~~~~i~yvfq~-~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g 235 (399)
. . ....+..++|+||+ ..+|+.+ ++.+++.+....++.+.... .+.++. +.....+-.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~----tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 168 (520)
T TIGR03269 93 EVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDD----TVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARD 168 (520)
T ss_pred chhhhccCHHHHHHhhhcEEEEeccccccCCCC----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCccc
Confidence 0 0 00112358999997 4555544 56666655333233332222 222222 111111111222
Q ss_pred HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 236 ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 236 ~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
+....+++...+.+++.+|++++||||++++|+.+.+.+.+.|+++.++. ..++++++||++.+...+++++.
T Consensus 169 LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~-------g~tviivtHd~~~~~~~~d~i~~ 241 (520)
T TIGR03269 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKAS-------GISMVLTSHWPEVIEDLSDKAIW 241 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhc-------CcEEEEEeCCHHHHHHhcCEEEE
Confidence 23334566777789999999999999999999999999999999875432 23889999999999999999999
Q ss_pred ccCCeeeecCCCccc
Q 015825 316 LDGSIATNHQTSPKG 330 (399)
Q Consensus 316 ~~~~~~~~~~~~~~~ 330 (399)
+.+|.++..+++.++
T Consensus 242 l~~G~i~~~g~~~~~ 256 (520)
T TIGR03269 242 LENGEIKEEGTPDEV 256 (520)
T ss_pred EeCCEEeeecCHHHH
Confidence 999988766655443
No 211
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=5.8e-19 Score=168.42 Aligned_cols=211 Identities=12% Similarity=0.057 Sum_probs=141.3
Q ss_pred HHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee------ecCCC----ccccccCCeeEEe
Q 015825 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS------HTTRA----PRAMEKDGVHYHF 184 (399)
Q Consensus 115 ~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~------~ttr~----~~~~~~~~i~yvf 184 (399)
+.+|-..+..+.+....+|++++|+||||||||||+++|+|..++..| .+. ..... .......+++|+|
T Consensus 18 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G-~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~ 96 (257)
T PRK14246 18 LYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS-KIKVDGKVLYFGKDIFQIDAIKLRKEVGMVF 96 (257)
T ss_pred EecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcC-ceeEcCEEEECCcccccCCHHHHhcceEEEc
Confidence 334444444445555679999999999999999999999999988776 222 11111 1111234689999
Q ss_pred cChHHHHHHHhhhhhHHHHHHhccccC-CcHHHH----HHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCC
Q 015825 185 TERSVMEKAIKDGKFLEFASVHGNLYG-TSVEAV----EAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPP 254 (399)
Q Consensus 185 q~~~lf~~~~~~~~~~E~~~~~~~~~g-~~~~~i----~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P 254 (399)
|++.+|+.+ ++.+++.+.....+ ...+.. ...++. +... ..+-.+..+....+++...+.+++.+|
T Consensus 97 q~~~~~~~~----tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P 172 (257)
T PRK14246 97 QQPNPFPHL----SIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKP 172 (257)
T ss_pred cCCccCCCC----cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 998776554 66676665422112 122222 222222 1110 011111122223455666777999999
Q ss_pred ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 255 ~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
++++||||++++|..++..+.+.+.++.. .+++++++|+.+.+...+++++.+.+|++...+++.++...|
T Consensus 173 ~llllDEPt~~LD~~~~~~l~~~l~~~~~---------~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~~ 243 (257)
T PRK14246 173 KVLLMDEPTSMIDIVNSQAIEKLITELKN---------EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSP 243 (257)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHhc---------CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999987632 248999999999999999999999999998888877777766
Q ss_pred cchhh
Q 015825 335 ADHSV 339 (399)
Q Consensus 335 ~~~~v 339 (399)
.....
T Consensus 244 ~~~~~ 248 (257)
T PRK14246 244 KNELT 248 (257)
T ss_pred CcHHH
Confidence 54443
No 212
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=7.4e-19 Score=167.08 Aligned_cols=200 Identities=12% Similarity=0.098 Sum_probs=133.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+..+.+....+|++++|+||||||||||+++|+|+..+ ..| .+....... ......+++|+||++.+|
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 99 (253)
T PRK14261 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITG-DILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99 (253)
T ss_pred eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcce-EEEECCEEccccccchhhhhceEEEEecCCccC
Confidence 34444455669999999999999999999999998652 357 443321111 111234689999998766
Q ss_pred HHHHhhhhhHHHHHHhccccCC-cHH----HHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT-SVE----AVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~-~~~----~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+ . ++.+++.+....++. ... .+.+.++. +.. ..++-....+....+++...+.+++.+|++++||
T Consensus 100 ~-~----tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 174 (253)
T PRK14261 100 P-K----SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMD 174 (253)
T ss_pred c-c----cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4 2 666776654332221 111 12222221 110 0011111112223455566777999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcc
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~ 336 (399)
||++++|+.+++.+.+.+.++.+. .++++++|+++++...+++++.+.+|+++..+++.++...|..
T Consensus 175 EP~~gLD~~~~~~l~~~l~~~~~~---------~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 241 (253)
T PRK14261 175 EPCSALDPIATAKIEDLIEDLKKE---------YTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHE 241 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhC---------ceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhCCCc
Confidence 999999999999999888876421 3889999999999999999999999999888877777666543
No 213
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=9.8e-19 Score=166.04 Aligned_cols=198 Identities=14% Similarity=0.118 Sum_probs=132.3
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHHHH
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~ 192 (399)
.+.++...+|++++|+||||||||||+++|+|+.+ +..| .+....... .......++|+||++.+|+.
T Consensus 22 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (251)
T PRK14244 22 FDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKG-ELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK 100 (251)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcce-EEEECCEehHhcccchHHHhhhEEEEecCcccccC
Confidence 33444556999999999999999999999999975 3567 554322111 01123468999999766642
Q ss_pred HHhhhhhHHHHHHhccccCC--cHH----HHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 193 AIKDGKFLEFASVHGNLYGT--SVE----AVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~--~~~----~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
++.+++.+....++. ... .+.+.++. +..- .++..+..+....+++...+.+++.+|++++|||
T Consensus 101 -----tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 175 (251)
T PRK14244 101 -----SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDE 175 (251)
T ss_pred -----CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 455665543222221 111 12222222 1110 0111112222234566667779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~ 336 (399)
|++++|+.+++.+.+.|.++.. ..++++++|+++++...+++++.+.+|.++..+++.++...|..
T Consensus 176 Pt~~LD~~~~~~l~~~l~~~~~---------~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 241 (251)
T PRK14244 176 PCSALDPVATNVIENLIQELKK---------NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQS 241 (251)
T ss_pred CCccCCHHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcCCCC
Confidence 9999999999999998887631 23899999999999999999999999999888877777666543
No 214
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=8.7e-19 Score=167.28 Aligned_cols=200 Identities=13% Similarity=0.062 Sum_probs=134.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
.+....+|++++|+|+||||||||+++|+|++++ ..| .+....... ......+++|+||++.+|+ .
T Consensus 26 isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~- 102 (259)
T PRK14260 26 ISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEG-VVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-M- 102 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccce-EEEECCEeccccccchHhhhhheEEEecccccCC-c-
Confidence 3345569999999999999999999999999874 357 444322111 0112346899999987665 3
Q ss_pred hhhhhHHHHHHhccccC-CcHH----HHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 195 KDGKFLEFASVHGNLYG-TSVE----AVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g-~~~~----~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
++.+++.+....++ .+.. .+.+.+.. +.. ..++-.+..+....+++...+.+++.+|++++||||++
T Consensus 103 ---tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 179 (259)
T PRK14260 103 ---SIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179 (259)
T ss_pred ---cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 67777655322221 1111 12222222 110 01111111222234555666778999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc-----CCeeeecCCCccccCCCcchhh
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD-----GSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~-----~~~~~~~~~~~~~~~~p~~~~v 339 (399)
++|+.++..+.+.|.++.+ ..++++++|+++++...+++++.+. +|.++..+++.+++..|....+
T Consensus 180 ~LD~~~~~~l~~~l~~~~~---------~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~~~~~~~ 250 (259)
T PRK14260 180 ALDPIATMKVEELIHSLRS---------ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSNPLDSRT 250 (259)
T ss_pred cCCHHHHHHHHHHHHHHhc---------CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhcCCCChHH
Confidence 9999999999999988642 1388999999999999999998886 4888888888877766655444
Q ss_pred h
Q 015825 340 S 340 (399)
Q Consensus 340 ~ 340 (399)
.
T Consensus 251 ~ 251 (259)
T PRK14260 251 R 251 (259)
T ss_pred H
Confidence 3
No 215
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.73 E-value=5.2e-19 Score=165.33 Aligned_cols=184 Identities=15% Similarity=0.093 Sum_probs=123.5
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccC---CcccceeeecCCCcc-ccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFP---SMFGFSVSHTTRAPR-AMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~---~~~g~~i~~ttr~~~-~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+....+|++++|+||||||||||+++|+|.++ +..| .+........ ......++|+||++.+|+.+ ++.++
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G-~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~----tv~en 101 (226)
T cd03234 27 SLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSG-QILFNGQPRKPDQFQKCVAYVRQDDILLPGL----TVRET 101 (226)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCce-EEEECCEECChHHhcccEEEeCCCCccCcCC----cHHHH
Confidence 34556999999999999999999999999998 7788 4443222111 12234689999998777655 67777
Q ss_pred HHHhccccC---CcHHH----HHH-HHHcC-CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 203 ASVHGNLYG---TSVEA----VEA-VADAG-KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 203 ~~~~~~~~g---~~~~~----i~~-~~~~g-~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+...... ..... +.. .++.. ...+.+-.+..+....+++...+.+++.+|++++||||++++|+.++..
T Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~ 181 (226)
T cd03234 102 LTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALN 181 (226)
T ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHH
Confidence 765432211 11111 111 11111 1001111111122223455566678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCH-HHHHHHHHHhhcccCCeeee
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKL-EECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdl-eea~~~l~~ii~~~~~~~~~ 323 (399)
+.+.+.++.++ ..++++++|++ +++...+++++.+.+|+++.
T Consensus 182 ~~~~l~~~~~~--------~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 182 LVSTLSQLARR--------NRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred HHHHHHHHHHC--------CCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 99999876432 23889999998 68999999999999887764
No 216
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.73 E-value=1.1e-18 Score=167.79 Aligned_cols=199 Identities=12% Similarity=0.069 Sum_probs=129.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc--------ccceeeecCCCcc----ccccCCeeEEecChHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM--------FGFSVSHTTRAPR----AMEKDGVHYHFTERSV 189 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~--------~g~~i~~ttr~~~----~~~~~~i~yvfq~~~l 189 (399)
+....+....+|++++|+||||||||||+++|+|++++. .| .+........ ......++|+||++..
T Consensus 16 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~ 94 (272)
T PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTG-DVTLNGEPLAAIDAPRLARLRAVLPQAAQP 94 (272)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCce-EEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence 333344556699999999999999999999999999886 67 5544322111 1112246899998654
Q ss_pred HHHHHhhhhhHHHHHHhcccc----CC-cH---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEE---------
Q 015825 190 MEKAIKDGKFLEFASVHGNLY----GT-SV---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFI--------- 251 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~----g~-~~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili--------- 251 (399)
+..+ ++.+++.+....+ +. .. ..+...++. +....++-.+..+....++++..+.+++
T Consensus 95 ~~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~ 170 (272)
T PRK13547 95 AFAF----SAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAA 170 (272)
T ss_pred CCCC----cHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccC
Confidence 3333 6677765532111 10 11 112222222 1111111111112222345555666777
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
.+|++++||||++++|+.+++.+.+.++++.++. ..++++++|+++++...+++++.+.+|.++..+++.++.
T Consensus 171 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-------~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 171 QPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDW-------NLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred CCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhc-------CCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 5899999999999999999999999999875432 238899999999998899999999999988777666554
Q ss_pred C
Q 015825 332 D 332 (399)
Q Consensus 332 ~ 332 (399)
.
T Consensus 244 ~ 244 (272)
T PRK13547 244 T 244 (272)
T ss_pred C
Confidence 4
No 217
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.73 E-value=1.5e-18 Score=161.58 Aligned_cols=186 Identities=15% Similarity=0.148 Sum_probs=125.0
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+....++...+|++++|+||||||||||+++|+|.+++..| .+........ .....+++|+||++.+|+..
T Consensus 20 il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~- 97 (220)
T TIGR02982 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG-SLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL- 97 (220)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC-
Confidence 33333445568999999999999999999999999999888 5543222111 11235689999998777644
Q ss_pred hhhhhHHHHHHhccccC-CcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 195 KDGKFLEFASVHGNLYG-TSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g-~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.++..+....+. ...+. +.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|.
T Consensus 98 ---t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~ 174 (220)
T TIGR02982 98 ---TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDS 174 (220)
T ss_pred ---CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCH
Confidence 67777765443332 22222 2222222 111111112222222345566677799999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
.+++.+.+.|+++.++. ..++++++|+++ ....+++++.+.+|.
T Consensus 175 ~~~~~l~~~l~~~~~~~-------~~tii~~sh~~~-~~~~~d~v~~l~~g~ 218 (220)
T TIGR02982 175 KSGRDVVELMQKLAREQ-------GCTILIVTHDNR-ILDVADRIVHMEDGK 218 (220)
T ss_pred HHHHHHHHHHHHHHHHc-------CCEEEEEeCCHH-HHhhCCEEEEEECCE
Confidence 99999999998875432 248999999997 457888888887764
No 218
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.2e-18 Score=166.56 Aligned_cols=203 Identities=12% Similarity=0.072 Sum_probs=135.4
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecC
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTE 186 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~ 186 (399)
+-..+....+....+|++++|+||||||||||+++|+|+++| ..| .+....... .......++|+||+
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 97 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEG-HVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCce-EEEECCEeccccccchHhhhhceEEEecC
Confidence 333444444456679999999999999999999999999875 567 554322111 11223468999999
Q ss_pred hHHHHHHHhhhhhHHHHHHhccccCCc---HHHHHHHHHcC-CceE----EecchhhHHHHHcCCcceeEEEEcCCChHH
Q 015825 187 RSVMEKAIKDGKFLEFASVHGNLYGTS---VEAVEAVADAG-KRCI----LDIDVQGARSVRASPLDAIFIFICPPSMEE 258 (399)
Q Consensus 187 ~~lf~~~~~~~~~~E~~~~~~~~~g~~---~~~i~~~~~~g-~~~v----ldld~~g~~~l~~~~~~~~~ili~~P~lll 258 (399)
+.+|. + ++.+++.+....++.. ...+.+.++.. +... .+-.+..+....+++...+.+++.+|++++
T Consensus 98 ~~~~~-~----tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 172 (261)
T PRK14263 98 PNPFS-M----SIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLL 172 (261)
T ss_pred Ccccc-c----cHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 76653 3 6777776543322211 12233333321 1000 000011112223455566678899999999
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc--------CCeeeecCCCccc
Q 015825 259 LEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD--------GSIATNHQTSPKG 330 (399)
Q Consensus 259 LDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~--------~~~~~~~~~~~~~ 330 (399)
||||++++|+.++..+.+.+.++.+ ..++++++|+++++...+++++.+. +|+++..+++.++
T Consensus 173 lDEPtsgLD~~~~~~l~~~l~~~~~---------~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~ 243 (261)
T PRK14263 173 LDEPCSALDPIATRRVEELMVELKK---------DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQI 243 (261)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHH
Confidence 9999999999999999999987631 1388899999999999999999985 7888888887777
Q ss_pred cCCCc
Q 015825 331 IDLPA 335 (399)
Q Consensus 331 ~~~p~ 335 (399)
+..|.
T Consensus 244 ~~~~~ 248 (261)
T PRK14263 244 FQNPR 248 (261)
T ss_pred HhCCC
Confidence 66654
No 219
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.72 E-value=1.4e-18 Score=165.29 Aligned_cols=191 Identities=14% Similarity=0.109 Sum_probs=128.7
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
....++...+|++++|+||||||||||+++|+|+.++..| .+.... ...++|+||++.+++.+. .++.++
T Consensus 20 l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G-~i~~~~-------~~~i~~v~q~~~~~~~l~--~~~~~~ 89 (251)
T PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG-VIKRNG-------KLRIGYVPQKLYLDTTLP--LTVNRF 89 (251)
T ss_pred EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECC-------ccCEEEeccccccccccC--hhHHHH
Confidence 3334455569999999999999999999999999999888 554322 124899999875544320 133344
Q ss_pred HHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHH
Q 015825 203 ASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~ 281 (399)
..+. .+.....+...++. +....++..+..+....+++...+.+++.+|++++||||++++|+.++..+.+.|.++
T Consensus 90 ~~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 166 (251)
T PRK09544 90 LRLR---PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQL 166 (251)
T ss_pred Hhcc---ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 3221 11222333333322 1111111112222223455666777899999999999999999999999999999886
Q ss_pred HHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 282 KEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 282 ~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
.++. ..++|+++|+++++...+++++.+.+ .++..+++.++...|
T Consensus 167 ~~~~-------g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~~ 211 (251)
T PRK09544 167 RREL-------DCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLHP 211 (251)
T ss_pred HHhc-------CCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCCH
Confidence 5432 23889999999999999999988865 566667766665544
No 220
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.4e-18 Score=167.05 Aligned_cols=204 Identities=15% Similarity=0.096 Sum_probs=135.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+..+.++...+|++++|+||||||||||+++|+|+.++ ..| .+....... .......++|+||+..+|
T Consensus 40 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G-~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEG-EIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCce-EEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 33334455569999999999999999999999999763 577 443321111 111234689999987666
Q ss_pred HHHHhhhhhHHHHHHhccccCC-cH----HHHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT-SV----EAVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~-~~----~~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+ . ++.+++.+....++. .. ..+.+.++. +.. ..++..+..+....+++...+.+++.+|++++||
T Consensus 119 ~-~----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD 193 (272)
T PRK14236 119 P-K----SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLD 193 (272)
T ss_pred c-c----cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 4 2 556666543222221 11 112222221 110 0011111112223455566677899999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
||++++|+.++..+.+.+.++.+ + .++++++|+++++...+++++.+.+|.++..+++.++...|....+.
T Consensus 194 EPt~gLD~~~~~~l~~~L~~~~~--~-------~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 264 (272)
T PRK14236 194 EPTSALDPISTLKIEELITELKS--K-------YTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTSPAKKQTE 264 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh--C-------CeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhcCCCcHHHH
Confidence 99999999999999999988642 1 28899999999999999999999999998888777776666544444
No 221
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.1e-18 Score=168.95 Aligned_cols=200 Identities=13% Similarity=0.138 Sum_probs=133.6
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+..+.+....+|++++|+||||||||||+++|+|+.+ +..| .+....... ......+++|+||++.+|
T Consensus 54 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G-~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 132 (286)
T PRK14275 54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTG-ALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPF 132 (286)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCce-EEEECCEEhhhcccchHHhhhcEEEECCCCCCC
Confidence 3333445566999999999999999999999999753 3677 444322111 111234689999997665
Q ss_pred HHHHhhhhhHHHHHHhccccCCc-HH----HHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGTS-VE----AVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~~-~~----~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+ . ++.+++.+....++.. .. .+.+.++. +.. ..++-.+..+....++++..+.+++.+|++++||
T Consensus 133 ~-~----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD 207 (286)
T PRK14275 133 P-K----SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLD 207 (286)
T ss_pred c-c----CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4 2 6777776543222221 11 12222221 110 0111111122223456666777999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcc
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~ 336 (399)
||++++|+.+.+.+.+.|+++.. ..++++++|+++++...+++++.+.+|.+...+++.++...|..
T Consensus 208 EPt~gLD~~~~~~l~~~L~~~~~---------~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~~~~ 274 (286)
T PRK14275 208 EPTSALDPKATAKIEDLIQELRG---------SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKD 274 (286)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCc
Confidence 99999999999999988887532 13889999999999999999999999999888877776665543
No 222
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.7e-18 Score=179.86 Aligned_cols=195 Identities=13% Similarity=0.117 Sum_probs=134.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
+....+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+++.+
T Consensus 13 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--- 88 (491)
T PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSG-SILFQGKEIDFKSSKEALENGISMVHQELNLVLQR--- 88 (491)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCce-EEEECCEECCCCCHHHHHhCCEEEEecccccccCC---
Confidence 33334455669999999999999999999999999999888 554332211 111134689999997666554
Q ss_pred hhhHHHHHHhcc-ccC--CcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 197 GKFLEFASVHGN-LYG--TSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 197 ~~~~E~~~~~~~-~~g--~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+... ..+ .... .+.+.++. +.....+-.+..+....++++..+.+++.+|++++||||++++|+
T Consensus 89 -tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~ 167 (491)
T PRK10982 89 -SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTE 167 (491)
T ss_pred -CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence 77777665321 111 1112 12222222 111112222223333456677777899999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
.+.+.+.+.+.++.++ ..++++++|+++++...+++++.+.+|.++..+++.+
T Consensus 168 ~~~~~l~~~l~~l~~~--------g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 168 KEVNHLFTIIRKLKER--------GCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred HHHHHHHHHHHHHHhC--------CCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhh
Confidence 9999999998886421 2388999999999999999999999998887665543
No 223
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.3e-18 Score=168.54 Aligned_cols=202 Identities=13% Similarity=0.113 Sum_probs=132.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+....++...+|++++|+||||||||||+++|+|+++ +..| .+....... .......++|+||++.+|
T Consensus 54 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G-~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~ 132 (285)
T PRK14254 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEG-ELTFRGKNVYDADVDPVALRRRIGMVFQKPNPF 132 (285)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCce-EEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 3333445556899999999999999999999999986 4677 444321111 111234689999997655
Q ss_pred HHHHhhhhhHHHHHHhccccCCcH---HHHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGTSV---EAVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~~~---~~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
+ . ++.+++.+.....+... ..+.+.++. +.. ..++..+..+....++++..+.+++.+|++++||||
T Consensus 133 ~-~----tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEP 207 (285)
T PRK14254 133 P-K----SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEP 207 (285)
T ss_pred c-C----CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4 2 56666654322222221 122222222 110 001111112222345666677799999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhh-cccCCeeeecCCCccccCCCcchh
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHL-GLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii-~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
++++|+.+++.+.+.|+++.++ .++|+++|+++.+...+++++ .+.+|.++..+.+.+++..+....
T Consensus 208 ts~LD~~~~~~l~~~L~~~~~~---------~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~~~~~~ 275 (285)
T PRK14254 208 ASALDPVATSKIEDLIEELAEE---------YTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENPESQR 275 (285)
T ss_pred CCCCCHHHHHHHHHHHHHHhcC---------CEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhCcCCHH
Confidence 9999999999999988876421 288999999999998899864 568888887777666665554433
No 224
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.72 E-value=8.2e-19 Score=165.04 Aligned_cols=189 Identities=17% Similarity=0.168 Sum_probs=127.6
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+ . ++.+
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~----tv~~ 94 (237)
T cd03252 21 ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENG-RVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R----SIRD 94 (237)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c----hHHH
Confidence 3344568999999999999999999999999999888 554432211 1111345899999976553 2 6777
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CCce-----------EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GKRC-----------ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~~~-----------vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+... +.....+....+. +... .++-.+..+....+++...+.+++.+|++++||||++++|+.
T Consensus 95 nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~ 172 (237)
T cd03252 95 NIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYE 172 (237)
T ss_pred HhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 7765322 1222222221111 1100 001111122223455666677999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+++.+.+.|.++.+ ..++++++|+++++. .+++++.+.+|.++..+++.++..
T Consensus 173 ~~~~l~~~l~~~~~---------~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 173 SEHAIMRNMHDICA---------GRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred HHHHHHHHHHHhcC---------CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999887531 238899999999884 699999999998887776655543
No 225
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.1e-18 Score=167.95 Aligned_cols=204 Identities=14% Similarity=0.078 Sum_probs=134.3
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSV 189 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~l 189 (399)
.+..+.+....+|++++|+||||||||||+++|+|+.++ ..| .+....... ......+++|+||++.+
T Consensus 34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l 112 (274)
T PRK14265 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEG-RLLYRDRNIYDSQINSVKLRRQVGMVFQRPNP 112 (274)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCc-eEEECCEecccccchhHHHhhcEEEEccCCcc
Confidence 344444455679999999999999999999999998753 466 444322111 11123468999999766
Q ss_pred HHHHHhhhhhHHHHHHhccccCCc---HHHHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYGTS---VEAVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g~~---~~~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
|+ . ++.+++.+.....+.. ...+...++. +.. ..++..+..+....++++..+.+++.+|++++|||
T Consensus 113 ~~-~----tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDE 187 (274)
T PRK14265 113 FP-K----SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDE 187 (274)
T ss_pred cc-c----cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 54 2 5566665432222111 1112222221 110 00111111122223455666778999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc---------CCeeeecCCCccccC
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD---------GSIATNHQTSPKGID 332 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~---------~~~~~~~~~~~~~~~ 332 (399)
|++++|+.+++.+.+.|.++.+ ..++++++|+++++...+++++.+. +|.++..+++.+++.
T Consensus 188 Pt~~LD~~~~~~l~~~L~~~~~---------~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~ 258 (274)
T PRK14265 188 PCSALDPISTRQVEELCLELKE---------QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFG 258 (274)
T ss_pred CcccCCHHHHHHHHHHHHHHhc---------CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHh
Confidence 9999999999999999987632 1388999999999999999999986 788888888887777
Q ss_pred CCcchhh
Q 015825 333 LPADHSV 339 (399)
Q Consensus 333 ~p~~~~v 339 (399)
.|.....
T Consensus 259 ~~~~~~~ 265 (274)
T PRK14265 259 SPQTKEA 265 (274)
T ss_pred CCCCHHH
Confidence 7654443
No 226
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=9.2e-19 Score=164.30 Aligned_cols=186 Identities=16% Similarity=0.127 Sum_probs=125.9
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+....+|++++|+||||||||||+++|+|+.++..| .+...... ........++|+||++.+|+ . ++.++
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~----tv~en 95 (234)
T cd03251 22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSG-RILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-D----TVAEN 95 (234)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCC-EEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-c----cHHHH
Confidence 344568999999999999999999999999999888 55432211 11112345899999876654 2 67777
Q ss_pred HHHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 203 ASVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+.+....+ ........... +....++-.+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 96 l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 173 (234)
T cd03251 96 IAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173 (234)
T ss_pred hhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 76543222 22222211111 11111111112222234556667779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
++.+.+.|.++.+ ..++++++|+++++.. +++++.+.+|.+...+++.++
T Consensus 174 ~~~l~~~l~~~~~---------~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 223 (234)
T cd03251 174 ERLVQAALERLMK---------NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEEL 223 (234)
T ss_pred HHHHHHHHHHhcC---------CCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHH
Confidence 9999999987531 2378899999998854 999999999988766654433
No 227
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.72 E-value=1.6e-18 Score=181.68 Aligned_cols=201 Identities=14% Similarity=0.142 Sum_probs=131.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCcc--------ccccCCeeEEecChH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAPR--------AMEKDGVHYHFTERS 188 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~~--------~~~~~~i~yvfq~~~ 188 (399)
+....++...+|++++|+||||||||||+++|+|++++ ..| .+........ ......++|+||++.
T Consensus 24 ~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~ 102 (529)
T PRK15134 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSG-DIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM 102 (529)
T ss_pred eeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccce-EEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence 33334455569999999999999999999999999986 567 5543221110 011135899999864
Q ss_pred --HHHHHHhhhhhHHHHHHhccc-cCCcHH----HHHHHHHc-CCce---EEecchhhHHHHHcCCcceeEEEEcCCChH
Q 015825 189 --VMEKAIKDGKFLEFASVHGNL-YGTSVE----AVEAVADA-GKRC---ILDIDVQGARSVRASPLDAIFIFICPPSME 257 (399)
Q Consensus 189 --lf~~~~~~~~~~E~~~~~~~~-~g~~~~----~i~~~~~~-g~~~---vldld~~g~~~l~~~~~~~~~ili~~P~ll 257 (399)
+++.+ ++.+++.+.... .+.+.. .+.+.++. +... ..+-.+..+....+++...+.+++.+|+++
T Consensus 103 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~ll 178 (529)
T PRK15134 103 VSLNPLH----TLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELL 178 (529)
T ss_pred hhcCchh----hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 23332 344443321111 122222 22223322 1100 011111222233456677778999999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 258 ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 258 lLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+||||++++|+.+.+.+.+.|+++.++. ..++|+++|+++.+...+++++.+.+|.++..+++.++...+
T Consensus 179 llDEPt~~LD~~~~~~l~~~l~~l~~~~-------g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 248 (529)
T PRK15134 179 IADEPTTALDVSVQAQILQLLRELQQEL-------NMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAP 248 (529)
T ss_pred EEcCCCCccCHHHHHHHHHHHHHHHHhc-------CCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhhCC
Confidence 9999999999999999999999875432 238899999999999999999999999988777766665444
No 228
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=8.9e-19 Score=157.21 Aligned_cols=151 Identities=19% Similarity=0.169 Sum_probs=110.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc---ccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
.+....+|++++|+||||||||||+++|+|.+++..| .+........ ......++|+||++.+|+.+ ++.++
T Consensus 19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~~~ 93 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG-EIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENL----TVREN 93 (173)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEcccchHhhhccEEEEecCCccccCC----cHHHH
Confidence 3345568999999999999999999999999999888 5543221110 11234689999997666543 55555
Q ss_pred HHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 203 ASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
+. + ....+++...+.+++.+|++++||||++++|+.+++.+.+.++++.
T Consensus 94 ~~----------------L---------------S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 142 (173)
T cd03230 94 LK----------------L---------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142 (173)
T ss_pred hh----------------c---------------CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 43 0 1111223334447888999999999999999999999999999865
Q ss_pred HHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 283 EEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
++ ..++++++|+.+++...+++++.+.+|.
T Consensus 143 ~~--------g~tiii~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 143 KE--------GKTILLSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred HC--------CCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence 32 2378999999999888889988887653
No 229
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.72 E-value=1.7e-18 Score=166.15 Aligned_cols=199 Identities=14% Similarity=0.116 Sum_probs=132.6
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChH--HHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERS--VMEK 192 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~--lf~~ 192 (399)
+..+.++...+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++. +++.
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG-~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 105 (268)
T PRK10419 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG-NVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPR 105 (268)
T ss_pred eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCC
Confidence 33444455679999999999999999999999999999888 5554322111 112346899999863 2222
Q ss_pred HHhhhhhHHHHHHhcc-ccCCcHH----HHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 193 AIKDGKFLEFASVHGN-LYGTSVE----AVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~-~~g~~~~----~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
. ++.+++.+... .++.... .+.+.++. +.. .+.+..+..+....+++...+.+++.+|++++||||+++
T Consensus 106 ~----t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~ 181 (268)
T PRK10419 106 K----TVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSN 181 (268)
T ss_pred C----CHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 2 44444432211 1111111 22233322 111 111222222222345556677799999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+|..+++.+.+.|+++.++. ..++++++|+++.+...+++++.+.+|.++..+++.++..
T Consensus 182 LD~~~~~~~~~~l~~~~~~~-------~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 182 LDLVLQAGVIRLLKKLQQQF-------GTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred cCHHHHHHHHHHHHHHHHHc-------CcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 99999999999998875432 2388999999999999999999999999888887776653
No 230
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.72 E-value=1.7e-18 Score=181.10 Aligned_cols=188 Identities=15% Similarity=0.105 Sum_probs=130.3
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec-CC-------Cc---cccccCCeeEEecChHHHHHHHhhh
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT-TR-------AP---RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t-tr-------~~---~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
...+|++++|+||||||||||+++|+|+.++..| .+... .. .. .......++|+||++.+++.+
T Consensus 306 ~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~---- 380 (520)
T TIGR03269 306 EVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG-EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHR---- 380 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCC----
Confidence 3469999999999999999999999999999888 55431 11 00 001123589999997766655
Q ss_pred hhHHHHHHhccccCCcHH----HHHHHHHc-CCce-----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 198 KFLEFASVHGNLYGTSVE----AVEAVADA-GKRC-----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~-----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.+++.+...+ ..+.. .+.+.++. +... .++-.+..+....++++..+.+++.+|++++||||++++|
T Consensus 381 tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD 459 (520)
T TIGR03269 381 TVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMD 459 (520)
T ss_pred cHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 677776543211 11221 22222322 1110 1122222233335667777789999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
+.+.+.+.+.|+++.++. ..++++++||++++...+++++.+.+|.+...+++.+
T Consensus 460 ~~~~~~l~~~l~~l~~~~-------g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 514 (520)
T TIGR03269 460 PITKVDVTHSILKAREEM-------EQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEE 514 (520)
T ss_pred HHHHHHHHHHHHHHHHHc-------CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999998875432 2388999999999999999999999998877665443
No 231
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.71 E-value=1.8e-18 Score=161.62 Aligned_cols=191 Identities=18% Similarity=0.179 Sum_probs=124.0
Q ss_pred HHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHH
Q 015825 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 112 ~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~ 191 (399)
.+...+|.+.+..+.+....+|++++|+||||||||||+++|+|+.++..| .+....+..... ..++.++ +
T Consensus 27 ~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~---~~~~~~~-----~ 97 (224)
T cd03220 27 GRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG-TVTVRGRVSSLL---GLGGGFN-----P 97 (224)
T ss_pred hhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEchhh---cccccCC-----C
Confidence 344566667666666667779999999999999999999999999999888 554322211100 0111111 1
Q ss_pred HHHhhhhhHHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 192 KAIKDGKFLEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
.+ ++.+++.+....++...... .+.++. +....++..+..+....+++...+.+++.+|++++||||++++
T Consensus 98 ~~----tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 98 EL----TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred CC----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 11 45555544322233222221 222211 1111111122222233455666777999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
|+.++..+.+.+.++.++ ..++++++|+++++...+++++.+.+|.+..
T Consensus 174 D~~~~~~~~~~l~~~~~~--------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQ--------GKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred CHHHHHHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999876432 2378999999999998899999998887654
No 232
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.71 E-value=1.8e-18 Score=163.96 Aligned_cols=172 Identities=16% Similarity=0.068 Sum_probs=117.5
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
...+|++++|+||||||||||+++|+|.++|..| .+....+ .++|++|....+... ++.+++.+...
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G-~i~~~g~--------~i~~~~q~~~~~~~~----tv~e~l~~~~~ 87 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG-DIEIELD--------TVSYKPQYIKADYEG----TVRDLLSSITK 87 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCC-eEEECCc--------eEEEecccccCCCCC----CHHHHHHHHhh
Confidence 3458999999999999999999999999999888 5543221 378999886543322 56666543222
Q ss_pred ccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015825 209 LYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287 (399)
Q Consensus 209 ~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~ 287 (399)
.++.......+.++. +....++-.+..+....++++..+.+++.+|++.+||||++++|+.++..+.+.|+++..+.
T Consensus 88 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-- 165 (246)
T cd03237 88 DFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN-- 165 (246)
T ss_pred hccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc--
Confidence 111111112222221 11111121222222334566677779999999999999999999999999999998875431
Q ss_pred ccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 288 GKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 288 ~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
..++++++|+++++...+++++.+.+..
T Consensus 166 -----~~tiiivsHd~~~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 166 -----EKTAFVVEHDIIMIDYLADRLIVFEGEP 193 (246)
T ss_pred -----CCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence 2388999999999998899988887643
No 233
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.71 E-value=2e-18 Score=176.55 Aligned_cols=204 Identities=16% Similarity=0.130 Sum_probs=141.4
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc----ccceeeecCC--------CccccccCCeeEEecChH-HHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM----FGFSVSHTTR--------APRAMEKDGVHYHFTERS-VME 191 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~----~g~~i~~ttr--------~~~~~~~~~i~yvfq~~~-lf~ 191 (399)
+.++...+|++++|+|.|||||||+++.|.|+++.. .| .+....+ ..+....+.++|+||++- .+.
T Consensus 27 ~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G-~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~sln 105 (539)
T COG1123 27 DVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSG-EVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLN 105 (539)
T ss_pred cceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccce-EEEECCcchhcCCHHHHHHhccccEEEEecCchhhcC
Confidence 344667799999999999999999999999999875 45 4433221 112222346899999953 333
Q ss_pred HHHhh-hhhHHHHHHhccccCCcHHHHHHHHHcCCceEEec--------chhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 192 KAIKD-GKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDI--------DVQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 192 ~~~~~-~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldl--------d~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
...+. ..+.|....+.. ...++.++.+.+.+. .+.+ -|..+....+|+...+.+++++|+++++|||
T Consensus 106 P~~tIg~Qi~E~~~~h~~---~~~~ea~~~a~elL~-~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP 181 (539)
T COG1123 106 PVMTIGDQIREALRLHGK---GSRAEARKRAVELLE-QVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181 (539)
T ss_pred chhhHHHHHHHHHHHhcc---ccHHHHHHHHHHHHH-HcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence 22222 234444433321 223333322221110 0111 1222222345556666799999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
|.++|..++.++.+.|+.+.++.+. .+++++||+.-+.+.+|++++|.+|.++..|++++++..|......
T Consensus 182 TTaLDvt~q~qIL~llk~l~~e~g~-------a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~ 252 (539)
T COG1123 182 TTALDVTTQAQILDLLKDLQRELGM-------AVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTR 252 (539)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCc-------EEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccH
Confidence 9999999999999999999877543 8899999999999999999999999999999999999888765433
No 234
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.71 E-value=1.9e-18 Score=157.29 Aligned_cols=166 Identities=15% Similarity=0.128 Sum_probs=108.9
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc------cccccCCeeEEecChH--HHHHHHhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTERS--VMEKAIKDG 197 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~--lf~~~~~~~ 197 (399)
.+....+|++++|+||||||||||+++|+|..++..| .+....... ......+++|+||++. .| ..
T Consensus 11 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~---- 84 (190)
T TIGR01166 11 LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSG-AVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-AA---- 84 (190)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-eEEECCEEccccccchHHHHhhEEEEecChhhccc-cc----
Confidence 3345568999999999999999999999999999888 554322111 1111345899999863 23 22
Q ss_pred hhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 198 KFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++.+++.+....++..... +.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+++
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 164 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGRE 164 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 6677776543323333222 2222222 1111111112222223455666777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHH
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEE 305 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdlee 305 (399)
.+.+.|.++.++ ..++++++|++++
T Consensus 165 ~~~~~l~~~~~~--------~~tili~sH~~~~ 189 (190)
T TIGR01166 165 QMLAILRRLRAE--------GMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHc--------CCEEEEEeecccc
Confidence 999999886432 2388999998765
No 235
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.71 E-value=1.7e-18 Score=156.63 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=112.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecCh---HHHHHHHhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTER---SVMEKAIKDG 197 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~---~lf~~~~~~~ 197 (399)
.+....+|++++|+||||||||||+++|+|.+++..| .+....... .......++|+||++ .+++.+
T Consensus 19 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~---- 93 (182)
T cd03215 19 VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASG-EITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL---- 93 (182)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC----
Confidence 3345568999999999999999999999999999888 554322111 111234689999984 234433
Q ss_pred hhHHHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
++.+++.+... +....+++...+.+++.+|++++||||++++|+.+++.+.+.
T Consensus 94 t~~e~l~~~~~---------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 146 (182)
T cd03215 94 SVAENIALSSL---------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL 146 (182)
T ss_pred cHHHHHHHHhh---------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHH
Confidence 66676654321 011122334445588899999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
+.++.++ ..++++++|+++++...+++++.+.+|.
T Consensus 147 l~~~~~~--------~~tiii~sh~~~~~~~~~d~v~~l~~G~ 181 (182)
T cd03215 147 IRELADA--------GKAVLLISSELDELLGLCDRILVMYEGR 181 (182)
T ss_pred HHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence 9886431 2388999999999988899988887663
No 236
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.2e-18 Score=157.12 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=109.8
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc------cccccCCeeEEecChHHHHHHHhhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
.+....+|++++|+||||||||||+++|+|.+++..| .+....... .......++|+||++.+|+.. ++
T Consensus 19 i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~----t~ 93 (178)
T cd03229 19 VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSG-SILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHL----TV 93 (178)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccchhHHHHhhcEEEEecCCccCCCC----CH
Confidence 3445569999999999999999999999999999888 554322111 111234689999987655433 55
Q ss_pred HHHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 200 LEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
.++..+. . ....+++...+.+++.+|++.+||||++++|+.++..+.+.+.
T Consensus 94 ~~~l~~~-----l------------------------S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~ 144 (178)
T cd03229 94 LENIALG-----L------------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLK 144 (178)
T ss_pred HHheeec-----C------------------------CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 5554322 0 1111223334447788999999999999999999999999999
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
++.++. ..++++++|+.+++...+++++.+.+|
T Consensus 145 ~~~~~~-------~~tiii~sH~~~~~~~~~d~i~~l~~g 177 (178)
T cd03229 145 SLQAQL-------GITVVLVTHDLDEAARLADRVVVLRDG 177 (178)
T ss_pred HHHHhc-------CCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 875431 238899999999988888888877655
No 237
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=2.6e-18 Score=158.10 Aligned_cols=171 Identities=15% Similarity=0.081 Sum_probs=119.7
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC---CcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP---SMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~---~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
..+.+....+|++++|+||||||||||+++|+|.++ +..| .+....... .......++|+||+..+|+.+
T Consensus 23 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G-~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~--- 98 (202)
T cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG-DIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL--- 98 (202)
T ss_pred eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcce-EEEECCEECccchhhhcceEEEEecccccCCCC---
Confidence 333345567999999999999999999999999998 7778 554322111 111234589999987666654
Q ss_pred hhhHHHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHH
Q 015825 197 GKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~ 276 (399)
++.+++.+..... .+-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+
T Consensus 99 -tv~~~l~~~~~~~------------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~ 159 (202)
T cd03233 99 -TVRETLDFALRCK------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK 159 (202)
T ss_pred -cHHHHHhhhhhhc------------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHH
Confidence 7777776542211 010111122233455566668899999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcceEEE-eCCCHHHHHHHHHHhhcccCCeeee
Q 015825 277 RLRNAKEEIKQGKSSGIFDHIL-YNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Vi-v~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
.++++.++. ..++++ ++|+.+++...+++++.+.+|+++.
T Consensus 160 ~l~~~~~~~-------~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 160 CIRTMADVL-------KTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred HHHHHHHhC-------CCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 999875431 225555 5667888888999999999987764
No 238
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.71 E-value=2.8e-18 Score=162.86 Aligned_cols=192 Identities=13% Similarity=0.125 Sum_probs=126.6
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+...+|++++|+||||||||||+++|+|+.++ .| .+....... .......++|+||++..+..+ ++.+++
T Consensus 17 l~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~----tv~~nl 90 (248)
T PRK03695 17 AEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SG-SIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAM----PVFQYL 90 (248)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-Ce-EEEECCEecCcCCHHHHhhheEEecccCccCCCc----cHHHHH
Confidence 44568999999999999999999999999865 67 554322211 111123478999986555443 666776
Q ss_pred HHhccccCCcH---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEc-------CCChHHHHHHHHhCCCCcHH
Q 015825 204 SVHGNLYGTSV---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFIC-------PPSMEELEERLRARGTETED 272 (399)
Q Consensus 204 ~~~~~~~g~~~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~-------~P~lllLDEpl~~lD~~~~e 272 (399)
.+....+.... ..+.+.++. +....++..+..+....+++...+.+++. +|++++||||++++|+.++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~ 170 (248)
T PRK03695 91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA 170 (248)
T ss_pred HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHH
Confidence 65422211111 122222222 11111111111122223455556667775 56999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
.+.+.|+++.++ ..++++++|+++++...+++++.+.+|+++..+++.++...
T Consensus 171 ~l~~~L~~~~~~--------~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 223 (248)
T PRK03695 171 ALDRLLSELCQQ--------GIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTP 223 (248)
T ss_pred HHHHHHHHHHhC--------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCc
Confidence 999999876432 23889999999999999999999999998887776655443
No 239
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.71 E-value=1.6e-18 Score=200.56 Aligned_cols=190 Identities=16% Similarity=0.083 Sum_probs=140.4
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
....+|++++|+||||||||||+++|+|+.++..| .+....... ....+..+||++|...+++.+ ++.|++.
T Consensus 1960 f~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG-~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~L----Tv~E~L~ 2034 (2272)
T TIGR01257 1960 VGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSG-DATVAGKSILTNISDVHQNMGYCPQFDAIDDLL----TGREHLY 2034 (2272)
T ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEECCEECcchHHHHhhhEEEEeccccCCCCC----CHHHHHH
Confidence 44569999999999999999999999999999999 554322111 111234589999998877766 7888887
Q ss_pred HhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 205 VHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
+....++.+.+.+++.+.+ ++....+-.+..+....++++..+.+++.+|++++||||++++|+.+++.+++.|.
T Consensus 2035 l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~ 2114 (2272)
T TIGR01257 2035 LYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIV 2114 (2272)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 7666667655443333221 11111111122222334666777789999999999999999999999999999998
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
++.++ ..++|+++|+++++...+++++.+.+|++...+++.++
T Consensus 2115 ~l~~~--------g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2115 SIIRE--------GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred HHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 86432 34899999999999999999999999999888877654
No 240
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=1.3e-18 Score=162.31 Aligned_cols=190 Identities=16% Similarity=0.102 Sum_probs=135.9
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc---ccccCCeeEEecChH-HHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AMEKDGVHYHFTERS-VMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~~~~i~yvfq~~~-lf~~~~~~~~~~E~~ 203 (399)
+...+|++++++|||||||||++++|.|++.|..| .+......|. ....+.++++|.... +++.+ -..+..
T Consensus 45 f~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G-~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl----p~~ds~ 119 (325)
T COG4586 45 FEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG-KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL----PALDSL 119 (325)
T ss_pred eecCCCcEEEEEcCCCCcchhhHHHHhCccccCCC-eEEecCcCcchhHHHHHHHHHHHhhhhheeeeec----hhhhhH
Confidence 45679999999999999999999999999999998 5543322221 112233556554432 22222 123334
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEecchhhHHHH------HcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSV------RASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l------~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
......|..+.+..++.+.. +..++|++..-...+ ++.+.+.+.+|+++|+++.||||+.++|...+..+++.
T Consensus 120 ~v~~~Iy~Ipd~~F~~r~~~-l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~F 198 (325)
T COG4586 120 EVLKLIYEIPDDEFAERLDF-LTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREF 198 (325)
T ss_pred HHHHHHHhCCHHHHHHHHHH-HHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHH
Confidence 44455677777777665543 444566653222222 34456677899999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
++++.++. .+|+++.+|+++.....+++++.++.|+++..|+-.++
T Consensus 199 lke~n~~~-------~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l 244 (325)
T COG4586 199 LKEYNEER-------QATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244 (325)
T ss_pred HHHHHHhh-------CceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHH
Confidence 99877553 46999999999999999999999999999987765433
No 241
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.70 E-value=5.2e-18 Score=176.62 Aligned_cols=191 Identities=12% Similarity=0.078 Sum_probs=132.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+++.+
T Consensus 19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~--- 94 (501)
T PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAG-SILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM--- 94 (501)
T ss_pred EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEECCCCCHHHHHhCCEEEEEechhccCCC---
Confidence 33344455679999999999999999999999999999888 554322111 111134689999997766654
Q ss_pred hhhHHHHHHhcc--ccC-CcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 197 GKFLEFASVHGN--LYG-TSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 197 ~~~~E~~~~~~~--~~g-~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+... .++ .... .+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+
T Consensus 95 -tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 173 (501)
T PRK11288 95 -TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173 (501)
T ss_pred -CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCH
Confidence 67777765321 122 1221 22222322 111111222223333456677777899999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecC
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQ 325 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~ 325 (399)
.+.+.+.+.|.++.++ ..++|+++|+++++...+++++.+.+|.++...
T Consensus 174 ~~~~~l~~~l~~~~~~--------g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~ 222 (501)
T PRK11288 174 REIEQLFRVIRELRAE--------GRVILYVSHRMEEIFALCDAITVFKDGRYVATF 222 (501)
T ss_pred HHHHHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 9999999999886421 348999999999999999999999999876543
No 242
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.70 E-value=3.2e-18 Score=160.03 Aligned_cols=182 Identities=13% Similarity=0.113 Sum_probs=120.4
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
+....+....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++.+|+ .
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~---- 95 (225)
T PRK10247 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSG-TLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-D---- 95 (225)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-eEEECCEEcCcCCHHHHHhccEEEeccccccc-c----
Confidence 34444455679999999999999999999999999999888 554322111 1112346899999976654 2
Q ss_pred hhHHHHHHhccccCCc--HHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 198 KFLEFASVHGNLYGTS--VEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~--~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
++.+++.+....++.. ...+.+.++. +.. ...+..+..+....++++..+.+++.+|++++||||++++|+.+.+.
T Consensus 96 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (225)
T PRK10247 96 TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN 175 (225)
T ss_pred cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 5667665532222221 2223333332 111 11121122222234555666779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
+.+.+.++.++. ..++++++|+.+++. .+++++.+.
T Consensus 176 l~~~l~~~~~~~-------~~tvii~sh~~~~~~-~~d~i~~l~ 211 (225)
T PRK10247 176 VNEIIHRYVREQ-------NIAVLWVTHDKDEIN-HADKVITLQ 211 (225)
T ss_pred HHHHHHHHHHhc-------CCEEEEEECChHHHH-hCCEEEEEe
Confidence 999988865431 238899999998874 688887774
No 243
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2.7e-18 Score=160.65 Aligned_cols=182 Identities=21% Similarity=0.189 Sum_probs=121.9
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++.+|+ . ++.+++
T Consensus 24 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~----tv~~~~ 97 (229)
T cd03254 24 FSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG-QILIDGIDIRDISRKSLRSMIGVVLQDTFLFS-G----TIMENI 97 (229)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCEeHHHcCHHHHhhhEEEecCCchhhh-h----HHHHHH
Confidence 44569999999999999999999999999999888 554322111 1112345899999976654 2 667776
Q ss_pred HHhccccCCcHHHHHHHHHc-CCce-----------EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRC-----------ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~-----------vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+....+ ....+...++. +... .++-.+..+....++++..+.+++.+|++++||||++++|+.++
T Consensus 98 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~ 175 (229)
T cd03254 98 RLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETE 175 (229)
T ss_pred hccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 5542211 12222221111 1100 00000111222334556666799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTS 327 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~ 327 (399)
+.+.+.+..+. + ..++++++|+++++. .+++++.+.+|.++..++.
T Consensus 176 ~~l~~~l~~~~-~--------~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~~~ 221 (229)
T cd03254 176 KLIQEALEKLM-K--------GRTSIIIAHRLSTIK-NADKILVLDDGKIIEEGTH 221 (229)
T ss_pred HHHHHHHHHhc-C--------CCEEEEEecCHHHHh-hCCEEEEEeCCeEEEeCCH
Confidence 99999888753 1 238899999998875 5999999999888765543
No 244
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.70 E-value=4.7e-18 Score=157.71 Aligned_cols=183 Identities=13% Similarity=0.063 Sum_probs=121.4
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-cccCCeeEEecChHHHHHHHhhhhhH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-MEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
+....+....+|++++|+||||||||||+++|+|++++..| .+......... .....++|++|.+.+++.+ ++.
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~----t~~ 100 (214)
T PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESG-QIQIDGKTATRGDRSRFMAYLGHLPGLKADL----STL 100 (214)
T ss_pred eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCe-eEEECCEEccchhhhhceEEeecCcccccCC----cHH
Confidence 33334455669999999999999999999999999999888 55443221111 1123588999987665544 666
Q ss_pred HHHHHhccccCCc-HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 201 EFASVHGNLYGTS-VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 201 E~~~~~~~~~g~~-~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
++..+....++.. ...+.+.+.. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+.+.+.+.+
T Consensus 101 e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 180 (214)
T PRK13543 101 ENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180 (214)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 7665543222322 1222222222 1111112222222233455666677999999999999999999999999999988
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
.++.++ ..++++++|+++++...+++++.+.
T Consensus 181 ~~~~~~--------~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 181 SAHLRG--------GGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred HHHHhC--------CCEEEEEecChhhhhhhcceEEEEe
Confidence 876432 2388999999999998888876543
No 245
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=1.9e-18 Score=157.69 Aligned_cols=163 Identities=15% Similarity=0.088 Sum_probs=116.3
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc--CCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~--~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
...+....+|++++|+||||||||||+++|+|.. ++..| .+..............++|+||++.+|+.+ ++.+
T Consensus 24 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G-~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~----tv~~ 98 (192)
T cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITG-EILINGRPLDKNFQRSTGYVEQQDVHSPNL----TVRE 98 (192)
T ss_pred EccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcce-EEEECCEehHHHhhhceEEecccCccccCC----cHHH
Confidence 3334455689999999999999999999999975 36777 554332221111224589999987666554 6777
Q ss_pred HHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHH
Q 015825 202 FASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~ 281 (399)
++.+..... .+....+++...+.+++.+|+++++|||++++|+.+++.+.+.++++
T Consensus 99 ~l~~~~~~~------------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~ 154 (192)
T cd03232 99 ALRFSALLR------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL 154 (192)
T ss_pred HHHHHHHHh------------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 766532110 11222334455566888999999999999999999999999999876
Q ss_pred HHHHHhccCCCcceEEEeCCCHH-HHHHHHHHhhcccC-Ceeee
Q 015825 282 KEEIKQGKSSGIFDHILYNDKLE-ECYENLKKHLGLDG-SIATN 323 (399)
Q Consensus 282 ~~~l~~~~~~~~~t~Viv~hdle-ea~~~l~~ii~~~~-~~~~~ 323 (399)
.++ ..++++++|+++ ++...+++++.+.+ |.++.
T Consensus 155 ~~~--------~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 155 ADS--------GQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY 190 (192)
T ss_pred HHc--------CCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence 431 238899999998 46778899988887 77654
No 246
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.70 E-value=1.6e-18 Score=158.48 Aligned_cols=161 Identities=18% Similarity=0.132 Sum_probs=116.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc--CCcccceeeecCCCccc-cccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSHTTRAPRA-MEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~--~~~~g~~i~~ttr~~~~-~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
.+....+|++++|+||||||||||+++|+|+. ++..| .+......... .....++|+||++.+|+.+ ++.++
T Consensus 28 ~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~----t~~~~ 102 (194)
T cd03213 28 VSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG-EVLINGRPLDKRSFRKIIGYVPQDDILHPTL----TVRET 102 (194)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCce-EEEECCEeCchHhhhheEEEccCcccCCCCC----cHHHH
Confidence 33445689999999999999999999999999 88888 55443222111 1234589999987666544 66666
Q ss_pred HHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 203 ASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
+.+....+ . +....+++...+.+++.+|++++||||++++|+.+++.+.+.++++.
T Consensus 103 i~~~~~~~-------------------~-----LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~ 158 (194)
T cd03213 103 LMFAAKLR-------------------G-----LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA 158 (194)
T ss_pred HHHHHHhc-------------------c-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 65432111 1 11122334445568888999999999999999999999999998764
Q ss_pred HHHHhccCCCcceEEEeCCCHH-HHHHHHHHhhcccCCeeee
Q 015825 283 EEIKQGKSSGIFDHILYNDKLE-ECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hdle-ea~~~l~~ii~~~~~~~~~ 323 (399)
++ ..++++++|+++ ++...+++++.+.+|.+..
T Consensus 159 ~~--------~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 159 DT--------GRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred hC--------CCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 32 238899999986 6777889999998887654
No 247
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.70 E-value=2.6e-18 Score=165.40 Aligned_cols=187 Identities=16% Similarity=0.113 Sum_probs=130.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||+|||||+++|+|+++ ..| .+...... .....+..++|+||++.+|+. ++.+++
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G-~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-----tv~~nl 97 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG-DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-----TFRKNL 97 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCc-EEEECCEEhhhCCHHHHhhhEEEECCCcccchh-----hHHHHh
Confidence 4456999999999999999999999999997 567 55432211 111123468999999887752 667776
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEEecchhh-----------HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCILDIDVQG-----------ARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g-----------~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
...+. ...+.+.+.++. ++...++--+.+ +....+++...+.+++.+|++++||||++++|+.+.
T Consensus 98 ~~~~~---~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~ 174 (275)
T cd03289 98 DPYGK---WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITY 174 (275)
T ss_pred hhccC---CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHH
Confidence 43321 223334433332 111000000111 222234555666799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
..+++.|.+.. ..+++++++|+++.+. .+++++.+.+|.++..++|.+++..+
T Consensus 175 ~~l~~~l~~~~---------~~~tii~isH~~~~i~-~~dri~vl~~G~i~~~g~~~~l~~~~ 227 (275)
T cd03289 175 QVIRKTLKQAF---------ADCTVILSEHRIEAML-ECQRFLVIEENKVRQYDSIQKLLNEK 227 (275)
T ss_pred HHHHHHHHHhc---------CCCEEEEEECCHHHHH-hCCEEEEecCCeEeecCCHHHHhhCc
Confidence 99998888632 1368999999998765 59999999999999999998888865
No 248
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.70 E-value=7e-18 Score=157.36 Aligned_cols=182 Identities=15% Similarity=0.095 Sum_probs=119.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec--CC--Ccc-----c---cccCCeeEEecChHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT--TR--APR-----A---MEKDGVHYHFTERSV 189 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t--tr--~~~-----~---~~~~~i~yvfq~~~l 189 (399)
+....+....+|++++|+||||||||||+++|+|++++..| .+... .. ... . ....+++|+||++.+
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 101 (224)
T TIGR02324 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSG-RILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV 101 (224)
T ss_pred EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence 33444455679999999999999999999999999999888 55432 11 110 0 112458999999877
Q ss_pred HHHHHhhhhhHHHHHHhccccCCcHH----HHHHHHHc-CCce-EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYGTSVE----AVEAVADA-GKRC-ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~-vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.+ ++.+++.+....++.... .+.+.++. +... ..+..+..+....+++...+.+++.+|++++||||+
T Consensus 102 ~~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 177 (224)
T TIGR02324 102 IPRV----SALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPT 177 (224)
T ss_pred CCCc----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 6655 566665543222222222 22222222 1111 111111222223455666677899999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
+++|+.+.+.+.+.++++..+ ..++++++|+.+.+...+++++..
T Consensus 178 ~~LD~~~~~~l~~~l~~~~~~--------g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 178 ASLDAANRQVVVELIAEAKAR--------GAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred ccCCHHHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999886432 248899999998888788876654
No 249
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.70 E-value=4.8e-18 Score=159.91 Aligned_cols=185 Identities=16% Similarity=0.115 Sum_probs=124.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+...+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++.+++ . ++.+++
T Consensus 24 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~----tv~e~l 97 (238)
T cd03249 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSG-EILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G----TIAENI 97 (238)
T ss_pred EEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCC-EEEECCEehhhcCHHHHHhhEEEECCchhhhh-h----hHHHHh
Confidence 44568999999999999999999999999999888 454322111 1111235899999976654 3 667776
Q ss_pred HHhccccCCcHHHHHHHHHc-C-----------CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-G-----------KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g-----------~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+....+ .........+. + ....++-.+..+....+++...+.+++.+|++++||||++++|+.++
T Consensus 98 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~ 175 (238)
T cd03249 98 RYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175 (238)
T ss_pred hccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 6532221 11222111111 1 11111111112222344556666789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
+.+.+.|+.+. + ..++++++|+++++. .+++++.+.+|.++..++..++
T Consensus 176 ~~l~~~l~~~~-~--------g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 176 KLVQEALDRAM-K--------GRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDEL 224 (238)
T ss_pred HHHHHHHHHhc-C--------CCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHH
Confidence 99999988753 1 247889999999886 7999999999988766654433
No 250
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.70 E-value=6.5e-18 Score=175.82 Aligned_cols=194 Identities=13% Similarity=0.099 Sum_probs=132.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC--cccceeeecCCCc-----cccccCCeeEEecChHHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS--MFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~--~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+....+....+|++++|+||||||||||+++|+|+.++ ..| .+....... ......+++|+||++.+++.+
T Consensus 16 il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~- 93 (500)
T TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDG-EIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL- 93 (500)
T ss_pred eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCe-EEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC-
Confidence 33334455669999999999999999999999999886 577 554322111 111124689999997766654
Q ss_pred hhhhhHHHHHHhcccc--C--CcHH----HHHHHHHc-CCceEE-ecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 195 KDGKFLEFASVHGNLY--G--TSVE----AVEAVADA-GKRCIL-DIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~--g--~~~~----~i~~~~~~-g~~~vl-dld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
++.+++.+....+ + .... .+.+.++. +..... +..+..+....++++..+.+|+.+|++++||||++
T Consensus 94 ---tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~ 170 (500)
T TIGR02633 94 ---SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSS 170 (500)
T ss_pred ---cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 6777766543221 1 1122 22222322 111111 11122233345667777889999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
++|+.+.+.+.+.|+++.++ ..++++++||++++...+++++.+.+|.++..+++.
T Consensus 171 ~LD~~~~~~l~~~l~~l~~~--------g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (500)
T TIGR02633 171 SLTEKETEILLDIIRDLKAH--------GVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMS 226 (500)
T ss_pred CCCHHHHHHHHHHHHHHHhC--------CCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcc
Confidence 99999999999999886421 338899999999999999999999999887666544
No 251
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.70 E-value=2.7e-18 Score=174.43 Aligned_cols=202 Identities=16% Similarity=0.149 Sum_probs=142.8
Q ss_pred HHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecC-----CCccccccCCeeEEecC
Q 015825 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT-----RAPRAMEKDGVHYHFTE 186 (399)
Q Consensus 112 ~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~tt-----r~~~~~~~~~i~yvfq~ 186 (399)
++.|.+|--....+.++...+|++.+|+|.||||||||+|.|+|.++|..| .+.... ..+..-...|+..++|+
T Consensus 13 ~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G-~I~~~G~~~~~~sp~~A~~~GI~~V~QE 91 (500)
T COG1129 13 GISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG-EILIDGKPVAFSSPRDALAAGIATVHQE 91 (500)
T ss_pred cceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCc-eEEECCEEccCCCHHHHHhCCcEEEeec
Confidence 344556644444445566779999999999999999999999999999999 665432 23334445689999999
Q ss_pred hHHHHHHHhhhhhHHHHHHhcccc---C-CcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChH
Q 015825 187 RSVMEKAIKDGKFLEFASVHGNLY---G-TSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSME 257 (399)
Q Consensus 187 ~~lf~~~~~~~~~~E~~~~~~~~~---g-~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~ll 257 (399)
..+++.+ ++.||+.+..... + .......+ .+.. +...-.+.....+.-.++|.+..+.++..++.++
T Consensus 92 l~L~p~L----sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arll 167 (500)
T COG1129 92 LSLVPNL----SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVL 167 (500)
T ss_pred hhccCCc----cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998 9999986554321 1 22232222 2221 1110011111111112455666667888899999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCC
Q 015825 258 ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQT 326 (399)
Q Consensus 258 lLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~ 326 (399)
+|||||++|+....+.+.+.+++++++ ...+|+++|.++|+++.+|++.++.+|..+....
T Consensus 168 IlDEPTaaLt~~E~~~Lf~~ir~Lk~~--------Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 168 ILDEPTAALTVKETERLFDLIRRLKAQ--------GVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhC--------CCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999887778888888877642 4589999999999999999999999998876554
No 252
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.70 E-value=2.4e-18 Score=158.62 Aligned_cols=174 Identities=14% Similarity=0.084 Sum_probs=121.6
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++.+|+ . ++.+++
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~----tv~~~l 102 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEG-KIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-G----TIRSNL 102 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-eEEECCEEhHHCCHHHHHhhEEEEecCCcccC-c----cHHHHh
Confidence 44568999999999999999999999999999888 554322111 1112346899999986553 2 666766
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
.+... .....+.+.++ ++..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.|+++..
T Consensus 103 ~~~~~---~~~~~~~~~l~------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 173 (207)
T cd03369 103 DPFDE---YSDEEIYGALR------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT 173 (207)
T ss_pred cccCC---CCHHHHHHHhh------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC
Confidence 54321 12233333332 1212222233345556667788999999999999999999999888888887421
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCC
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQT 326 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~ 326 (399)
..++++++|+++++.. +++++.+.+|.+...++
T Consensus 174 ---------~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 174 ---------NSTILTIAHRLRTIID-YDKILVMDAGEVKEYDH 206 (207)
T ss_pred ---------CCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCC
Confidence 2488999999998865 89999999887765543
No 253
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.70 E-value=5.5e-18 Score=169.42 Aligned_cols=186 Identities=15% Similarity=0.114 Sum_probs=134.0
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-----ccccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+...+|++.+|+|.||||||||+++|.|.+.|+.| .+....++ |..-...|+|+++|++.+++.+ |+.||
T Consensus 25 l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~G-eI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~l----TV~EN 99 (501)
T COG3845 25 LSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSG-EIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTL----TVAEN 99 (501)
T ss_pred eeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcc-eEEECCEEeccCCHHHHHHcCCcEEeecccccccc----chhhh
Confidence 55679999999999999999999999999999999 66544333 2333345899999999999988 99999
Q ss_pred HHHhccc---cCCcHHHHHHHHHc-CCceEEecchhh----HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 203 ASVHGNL---YGTSVEAVEAVADA-GKRCILDIDVQG----ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 203 ~~~~~~~---~g~~~~~i~~~~~~-g~~~vldld~~g----~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
+.....- .......+++.+.+ ....=++++|.. +.--.+|+...+-+|...+++++|||||+-+-|...+++
T Consensus 100 iiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~l 179 (501)
T COG3845 100 IILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADEL 179 (501)
T ss_pred hhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 8775432 12233333333222 001111222211 111235666777799999999999999999977766777
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCC
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQT 326 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~ 326 (399)
.+.++.+.++ ..++|++||-++|+.+.+|++-++..|+.+....
T Consensus 180 f~~l~~l~~~--------G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 180 FEILRRLAAE--------GKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHHHC--------CCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 7777765532 4599999999999999999999999998765543
No 254
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=5.1e-18 Score=162.51 Aligned_cols=202 Identities=11% Similarity=0.053 Sum_probs=131.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc--------cccccCCeeEEecChH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP--------RAMEKDGVHYHFTERS 188 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~ 188 (399)
+..+.+....+|++++|+||||||||||+++|+|+..+ ..| .+....... ......+++|+||++.
T Consensus 31 vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 109 (265)
T PRK14252 31 ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEG-EIILHPDNVNILSPEVDPIEVRMRISMVFQKPN 109 (265)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCccc-EEEEcCccccccccccCHHHHhccEEEEccCCc
Confidence 34444455669999999999999999999999999864 466 443221110 0112346899999976
Q ss_pred HHHHHHhhhhhHHHHHHhccccCCcH-----HHHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHH
Q 015825 189 VMEKAIKDGKFLEFASVHGNLYGTSV-----EAVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEE 258 (399)
Q Consensus 189 lf~~~~~~~~~~E~~~~~~~~~g~~~-----~~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lll 258 (399)
+|+ . ++.+++.+....++... +.+...+.. +... .++-....+....+++...+.+++.+|++++
T Consensus 110 ~~~-~----tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 184 (265)
T PRK14252 110 PFP-K----SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILL 184 (265)
T ss_pred CCc-c----hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 664 2 45666654322222211 122222221 1100 0000000111123445556678999999999
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 259 LEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 259 LDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
||||++++|+.+.+.+.+.|.++.. ..++++++|+++++...+++++.+.+|.+...++..+++..|....
T Consensus 185 lDEPt~gLD~~~~~~l~~~l~~l~~---------~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 255 (265)
T PRK14252 185 FDEPTSALDPIATASIEELISDLKN---------KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPKNKQ 255 (265)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHh---------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHH
Confidence 9999999999999999999887642 1388999999999999999999999999988887777766554433
No 255
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.70 E-value=3.3e-18 Score=157.88 Aligned_cols=179 Identities=14% Similarity=0.099 Sum_probs=117.0
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-cccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-MEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
....+....+|++++|+||||||||||+++|+|+.++..| .+......... .....++|+++...+++.+ ++.+
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----tv~~ 92 (207)
T PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG-TIKLDGGDIDDPDVAEACHYLGHRNAMKPAL----TVAE 92 (207)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEeCcchhhHhhcEEecCCCcCCCCC----cHHH
Confidence 3334455669999999999999999999999999999888 55432211110 1234578998775554433 6667
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
++.+....++.....+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+.+.+.+.|.+
T Consensus 93 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 172 (207)
T PRK13539 93 NLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRA 172 (207)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 6655433333333333333332 111111222222223345666677799999999999999999999999999999987
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
+.++ ..++++++|+++++.. ++++.+
T Consensus 173 ~~~~--------~~tiii~sH~~~~~~~--~~~~~~ 198 (207)
T PRK13539 173 HLAQ--------GGIVIAATHIPLGLPG--ARELDL 198 (207)
T ss_pred HHHC--------CCEEEEEeCCchhhcc--CcEEee
Confidence 6432 2388999999988765 555444
No 256
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.69 E-value=5.6e-18 Score=155.99 Aligned_cols=173 Identities=17% Similarity=0.107 Sum_probs=115.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+....+....+|++++|+||||||||||+++|+|.+++..| .+....... .......++|+++...+++.+ +
T Consensus 16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----t 90 (204)
T PRK13538 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG-EVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTEL----T 90 (204)
T ss_pred EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEcccchHHhhhheEEeCCccccCcCC----c
Confidence 33344455679999999999999999999999999999988 554322111 111234588999887666544 7
Q ss_pred hHHHHHHhccccCC-cHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHH
Q 015825 199 FLEFASVHGNLYGT-SVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (399)
Q Consensus 199 ~~E~~~~~~~~~g~-~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~ 276 (399)
+.|++.+....++. ....+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+
T Consensus 91 v~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 170 (204)
T PRK13538 91 ALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEA 170 (204)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 77777665433331 22333333332 11111121222222334566667779999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcceEEEeCCCHHHHH
Q 015825 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECY 307 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Viv~hdleea~ 307 (399)
.|+++.++ ..++++++|+++..-
T Consensus 171 ~l~~~~~~--------~~tiii~sh~~~~i~ 193 (204)
T PRK13538 171 LLAQHAEQ--------GGMVILTTHQDLPVA 193 (204)
T ss_pred HHHHHHHC--------CCEEEEEecChhhhc
Confidence 99876421 238899999986654
No 257
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.69 E-value=5e-18 Score=176.71 Aligned_cols=186 Identities=10% Similarity=0.050 Sum_probs=128.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChH---HHHHHHhhhhhHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERS---VMEKAIKDGKFLE 201 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~---lf~~~~~~~~~~E 201 (399)
..+|++++|+||||||||||+++|+|+.++..| .+....+.. ......+++|+||++. .|+.+ ++.+
T Consensus 276 i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~----tv~e 350 (501)
T PRK11288 276 VRAGEIVGLFGLVGAGRSELMKLLYGATRRTAG-QVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH----SVAD 350 (501)
T ss_pred EeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCc-eEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC----CHHH
Confidence 459999999999999999999999999999888 665432211 1111246899999864 55544 6666
Q ss_pred HHHHhcccc----C--CcH----HHHHHHHHcCCc--eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLY----G--TSV----EAVEAVADAGKR--CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~----g--~~~----~~i~~~~~~g~~--~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+....+ + ... +.+.+.+..... ...+-.+..+....++++..+.+++.+|++++||||++++|+.
T Consensus 351 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~ 430 (501)
T PRK11288 351 NINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVG 430 (501)
T ss_pred HhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHh
Confidence 655422111 1 011 122222322110 1112222233334566677778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
+++.+.+.|.++.++ ..++|+++||++++...+++++.+.+|.++..+++.
T Consensus 431 ~~~~l~~~l~~l~~~--------g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~ 481 (501)
T PRK11288 431 AKHEIYNVIYELAAQ--------GVAVLFVSSDLPEVLGVADRIVVMREGRIAGELARE 481 (501)
T ss_pred HHHHHHHHHHHHHhC--------CCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccc
Confidence 999999999886532 238999999999999999999999999888766544
No 258
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=5.4e-18 Score=160.82 Aligned_cols=203 Identities=14% Similarity=0.086 Sum_probs=132.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+....+....+|++++|+||||||||||+++|+|+.. +..| .+....... ......+++|+||++.+|
T Consensus 18 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14266 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEG-HIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPF 96 (250)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCcc-EEEECCEEcccccccHHHHhhheEEEecCCccC
Confidence 3333445556899999999999999999999999853 2567 454322111 111234689999997766
Q ss_pred HHHHhhhhhHHHHHHhccccCC-cHHHHH----HHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT-SVEAVE----AVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~-~~~~i~----~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+ . ++.+++.+....++. ..+... +.++. +... .++.....+....+++...+.+++.+|++++||
T Consensus 97 ~-~----t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 171 (250)
T PRK14266 97 P-K----SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMD 171 (250)
T ss_pred c-c----hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4 2 456666543222221 112121 22221 1100 001111112222345566667899999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
||++++|+.+...+.+.|+++.. ..++++++|+++++...+++++.+.+|.+...+++.++...|.....
T Consensus 172 EP~~gLD~~~~~~l~~~l~~~~~---------~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 241 (250)
T PRK14266 172 EPCSALDPISTTKIEDLIHKLKE---------DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPKDKRT 241 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc---------CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhCCCChHH
Confidence 99999999999999998887632 23889999999999999999888999999888887777666654443
No 259
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.69 E-value=4.8e-18 Score=181.39 Aligned_cols=188 Identities=19% Similarity=0.169 Sum_probs=138.0
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
...+|+.++|+|+||||||||+|+|.|++.|..| .+.....+. ....++.++|+.|+.-+|. +++.||+.
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G-~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-----gSI~eNi~ 568 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG-RILLDGVDLNDIDLASLRRQVGYVLQDPFLFS-----GSIRENIA 568 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEeHHhcCHHHHHhheeEEcccchhhc-----CcHHHHHh
Confidence 3468999999999999999999999999999999 665433221 1222456999999987664 37888887
Q ss_pred HhccccCCcHHHHHHHHH-cCCceEEecch-----------hhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 205 VHGNLYGTSVEAVEAVAD-AGKRCILDIDV-----------QGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~-~g~~~vldld~-----------~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
+..-. .+.+++.+++. .+...++.--| .++...++|+...+.+++.+|++++|||+|+++|+++++
T Consensus 569 l~~p~--~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~ 646 (709)
T COG2274 569 LGNPE--ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA 646 (709)
T ss_pred cCCCC--CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHH
Confidence 75432 22333433322 12111110001 122334677788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
.+.+.|.+.. ..+|+|+++|.+ .+++.+++++++++|++++.|+.+++...-
T Consensus 647 ~I~~~L~~~~---------~~~T~I~IaHRl-~ti~~adrIiVl~~Gkiv~~gs~~ell~~~ 698 (709)
T COG2274 647 IILQNLLQIL---------QGRTVIIIAHRL-STIRSADRIIVLDQGKIVEQGSHEELLAQG 698 (709)
T ss_pred HHHHHHHHHh---------cCCeEEEEEccc-hHhhhccEEEEccCCceeccCCHHHHHHhc
Confidence 9999998753 245999999987 566789999999999999999988877653
No 260
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.69 E-value=8.4e-18 Score=175.04 Aligned_cols=187 Identities=15% Similarity=0.144 Sum_probs=129.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecCh---HHHHHHHhhhhhHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTER---SVMEKAIKDGKFLE 201 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~---~lf~~~~~~~~~~E 201 (399)
..+|++++|+||||||||||+++|+|+.+|..| .+....... ......+++|+||++ .+++.+ ++.+
T Consensus 275 i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~----tv~e 349 (501)
T PRK10762 275 LRKGEILGVSGLMGAGRTELMKVLYGALPRTSG-YVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM----SVKE 349 (501)
T ss_pred EcCCcEEEEecCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC----cHHH
Confidence 458999999999999999999999999999888 555422111 111124689999985 344444 6666
Q ss_pred HHHHhcc-----ccC-CcH----HHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGN-----LYG-TSV----EAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~-----~~g-~~~----~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+... .++ ... ..+.+.++. +.. ...+-.+..+....++++..+.+++.+|++++||||++++|+.
T Consensus 350 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~ 429 (501)
T PRK10762 350 NMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVG 429 (501)
T ss_pred HhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHh
Confidence 6654211 011 111 122333332 110 1122222233334566777778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
+.+.+.+.|+++..+ ..++++++||++++...+++++.+.+|.++..+++.+
T Consensus 430 ~~~~l~~~l~~~~~~--------g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 430 AKKEIYQLINQFKAE--------GLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHHHHHHC--------CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 999999999987532 3388999999999999999999999998887666554
No 261
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.68 E-value=2.8e-18 Score=159.56 Aligned_cols=178 Identities=16% Similarity=0.185 Sum_probs=119.1
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|..++..| .+....... .......++|+||++.+|+ . ++.+++
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~----tv~e~l 98 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG-SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-G----TLRDNI 98 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-eEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-c----hHHHHh
Confidence 44569999999999999999999999999999888 554432211 0111245899999987664 3 666776
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEEecc-----------hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCILDID-----------VQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vldld-----------~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+....+ ....+.+.++. +....++.. +..+....+++...+.+++.+|++++||||++++|+.++
T Consensus 99 ~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 176 (220)
T cd03245 99 TLGAPLA--DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176 (220)
T ss_pred hcCCCCC--CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 5432211 22222222221 110000000 011222234556666789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
..+.+.|+++.. + .++++++|+++.. ..+++++.+.+|.++.
T Consensus 177 ~~l~~~l~~~~~--------~-~tii~~sH~~~~~-~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 177 ERLKERLRQLLG--------D-KTLIIITHRPSLL-DLVDRIIVMDSGRIVA 218 (220)
T ss_pred HHHHHHHHHhcC--------C-CEEEEEeCCHHHH-HhCCEEEEEeCCeEee
Confidence 999999987542 1 3889999999875 7888988888876653
No 262
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.68 E-value=6.8e-18 Score=155.13 Aligned_cols=175 Identities=17% Similarity=0.097 Sum_probs=117.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
.+....+|++++|+|+||||||||+++|+|+.++..| .+....... ......+++|++|.+.+++.+ ++.++
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~e~ 93 (201)
T cd03231 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG-RVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTL----SVLEN 93 (201)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccccHHhhhheEEeccccccCCCc----CHHHH
Confidence 3345569999999999999999999999999999888 554322111 112234689999987665544 67777
Q ss_pred HHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHH
Q 015825 203 ASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~ 281 (399)
+.+....+ ....+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.+.++
T Consensus 94 l~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 171 (201)
T cd03231 94 LRFWHADH--SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171 (201)
T ss_pred HHhhcccc--cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 66543222 22333333332 1111111112222223455666777999999999999999999999999999988875
Q ss_pred HHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 282 KEEIKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 282 ~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
..+ ..++++++|+..+....+.+.+.
T Consensus 172 ~~~--------g~tiii~sH~~~~~~~~~~~~~~ 197 (201)
T cd03231 172 CAR--------GGMVVLTTHQDLGLSEAGARELD 197 (201)
T ss_pred HhC--------CCEEEEEecCchhhhhccceeEe
Confidence 421 34889999998887776666543
No 263
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.68 E-value=4.7e-18 Score=196.66 Aligned_cols=196 Identities=14% Similarity=0.059 Sum_probs=142.5
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
.+..+.+....+|++++|+||||||||||+++|+|+.+|..| .+....... ....+..++|+||+..+|+.+
T Consensus 944 ~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG-~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~L---- 1018 (2272)
T TIGR01257 944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSG-TVLVGGKDIETNLDAVRQSLGMCPQHNILFHHL---- 1018 (2272)
T ss_pred eEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCce-EEEECCEECcchHHHHhhcEEEEecCCcCCCCC----
Confidence 334444455679999999999999999999999999999888 554322111 111234689999998777766
Q ss_pred hhHHHHHHhccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 198 KFLEFASVHGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++.|++.+....++.+....+ +.++. ++....+..+..+....++++..+.+|+.+|++++||||++++|+.+++
T Consensus 1019 TV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~ 1098 (2272)
T TIGR01257 1019 TVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRR 1098 (2272)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHH
Confidence 888888877666665433322 22322 1111112222233334566777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
.+.+.|++++ + ..++++++|+++++...+++++.+.+|++...+++..+
T Consensus 1099 ~l~~lL~~l~-~--------g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1099 SIWDLLLKYR-S--------GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred HHHHHHHHHh-C--------CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999998863 1 23889999999999999999999999998887776544
No 264
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.68 E-value=5.1e-18 Score=179.90 Aligned_cols=189 Identities=14% Similarity=0.151 Sum_probs=136.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|+.++|+||||||||||++.|+|++ |..| .+.....+.. ...++.++|++|++.+|. +++.|
T Consensus 369 i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G-~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-----~TI~e 441 (588)
T PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQG-SLKINGIELRELDPESWRKHLSWVGQNPQLPH-----GTLRD 441 (588)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc-EEEECCEecccCCHHHHHhheEEecCCCcCCC-----cCHHH
Confidence 33455699999999999999999999999999 7788 6654332221 122346999999987774 38889
Q ss_pred HHHHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
|+.+... ..+.+++.++++. |....+.-.-..+...++|+...+.+++.+|++++||||++++|.+
T Consensus 442 NI~~g~~--~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~ 519 (588)
T PRK11174 442 NVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519 (588)
T ss_pred HhhcCCC--CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 9887532 2344555554432 1111111000112234567777888999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+++.+++.+.++.+ ..|+++++|.++ ....+|+++.+++|.++..|+.+++...
T Consensus 520 te~~i~~~l~~~~~---------~~TvIiItHrl~-~i~~aD~Iivl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 520 SEQLVMQALNAASR---------RQTTLMVTHQLE-DLAQWDQIWVMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred HHHHHHHHHHHHhC---------CCEEEEEecChH-HHHhCCEEEEEeCCeEeecCCHHHHHhc
Confidence 99999998877531 238899999994 5567999999999999999987777644
No 265
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=7.1e-18 Score=158.50 Aligned_cols=186 Identities=18% Similarity=0.130 Sum_probs=124.9
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+....+|++++|+||||||||||+++|+|+.++..| .+...... ........++|+||++.+|+ . ++.++
T Consensus 21 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~----tv~~n 94 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSG-SILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-D----TIGYN 94 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-EEEECCEEhhhCCHHHHHhhEEEECCCChhhc-c----hHHHH
Confidence 344569999999999999999999999999999888 55442211 11112345899999987664 2 67777
Q ss_pred HHHhccccCCcHHHHHHHHHc-CCce-----------EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 203 ASVHGNLYGTSVEAVEAVADA-GKRC-----------ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~-g~~~-----------vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+.+.... .....+...... +... .++-.+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 95 l~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~ 172 (236)
T cd03253 95 IRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172 (236)
T ss_pred HhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 7654321 122222221111 1100 0000011122223455666779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
++.+.+.|.++.+ ..++++++|+.+.+. .+++++.+.+|.+...+++.++
T Consensus 173 ~~~l~~~l~~~~~---------~~tiii~sh~~~~~~-~~d~~~~l~~g~i~~~~~~~~~ 222 (236)
T cd03253 173 EREIQAALRDVSK---------GRTTIVIAHRLSTIV-NADKIIVLKDGRIVERGTHEEL 222 (236)
T ss_pred HHHHHHHHHHhcC---------CCEEEEEcCCHHHHH-hCCEEEEEECCEEEeeCCHHHH
Confidence 9999888887532 237889999999885 4999999999988776654443
No 266
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=7.6e-18 Score=171.81 Aligned_cols=187 Identities=18% Similarity=0.197 Sum_probs=139.1
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+|+||||||||++.|+|+.++..| .+.....+.+ ...++.++|+.|++-+|.. ++.||+
T Consensus 342 ~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G-~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-----TireNi 415 (559)
T COG4988 342 LTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG-EIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-----TIRENI 415 (559)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCc-eEEECCccccccCHHHHHhHeeeeCCCCccccc-----cHHHHh
Confidence 34569999999999999999999999999999888 6664322211 2223468999999876653 788888
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEEecchhhH-----------HHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGA-----------RSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~-----------~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+...- .+.+++.++++. +...+++- |.|. ...++|++..+.+|+.++++.++|||++++|.+++
T Consensus 416 ~l~~~~--~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE 492 (559)
T COG4988 416 LLARPD--ASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETE 492 (559)
T ss_pred hccCCc--CCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHH
Confidence 775432 345656555443 22222222 2222 22345666777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.+.+.++.++ -|+++++|++..+ ..+|+++++++|++++.+++.+++..
T Consensus 493 ~~i~~~l~~l~~~---------ktvl~itHrl~~~-~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 493 QIILQALQELAKQ---------KTVLVITHRLEDA-ADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred HHHHHHHHHHHhC---------CeEEEEEcChHHH-hcCCEEEEecCCceeccCCHHHHhhc
Confidence 9999999987643 2888999998555 47999999999999999998877644
No 267
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.68 E-value=6.7e-18 Score=176.13 Aligned_cols=185 Identities=13% Similarity=0.113 Sum_probs=126.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecCh---HHHHHHHhhhhhHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTER---SVMEKAIKDGKFLE 201 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~---~lf~~~~~~~~~~E 201 (399)
..+|++++|+||||||||||+++|+|+.+|..| .+....... ......+++|+||++ .+++.+ ++.+
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~----tv~e 360 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKRAGG-EIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF----SIAQ 360 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC-eEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC----cHHH
Confidence 458999999999999999999999999999888 555432111 111124689999973 355544 6667
Q ss_pred HHHHhccc--------cCC-cH----HHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 202 FASVHGNL--------YGT-SV----EAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 202 ~~~~~~~~--------~g~-~~----~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
++.+.... ++. .. ..+.+.++. +.. ...+-.+..+....++++..+.+++.+|++++||||++++
T Consensus 361 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~L 440 (510)
T PRK09700 361 NMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGI 440 (510)
T ss_pred HhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCc
Confidence 66543211 011 11 112233322 111 1112222233334566677778999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCC
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTS 327 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~ 327 (399)
|+.+.+.+.+.|+++.++ ..++|+++||++++...+++++.+.+|.+...++.
T Consensus 441 D~~~~~~l~~~l~~l~~~--------g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 441 DVGAKAEIYKVMRQLADD--------GKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred CHHHHHHHHHHHHHHHHC--------CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 999999999999986532 23889999999999999999999999987765443
No 268
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1e-17 Score=163.66 Aligned_cols=197 Identities=17% Similarity=0.139 Sum_probs=128.6
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHHHHHHh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
+....+|++++|+||||||||||+++|+|+++ +..| .+....... .......++|+||++.+|+ .
T Consensus 65 s~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G-~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~-- 140 (305)
T PRK14264 65 SMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDG-SVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-K-- 140 (305)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEcccccccHHHHhhceEEEccCCcccc-c--
Confidence 34456899999999999999999999999975 4677 454322111 1112346899999976654 2
Q ss_pred hhhhHHHHHHhccc------------cCCc-----HHHHHHHHHcC-Cc----eEEecchhhHHHHHcCCcceeEEEEcC
Q 015825 196 DGKFLEFASVHGNL------------YGTS-----VEAVEAVADAG-KR----CILDIDVQGARSVRASPLDAIFIFICP 253 (399)
Q Consensus 196 ~~~~~E~~~~~~~~------------~g~~-----~~~i~~~~~~g-~~----~vldld~~g~~~l~~~~~~~~~ili~~ 253 (399)
++.+++.+.... ++.. ...+...++.. .. -.++..+..+....++++..+.+++..
T Consensus 141 --tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~ 218 (305)
T PRK14264 141 --SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVD 218 (305)
T ss_pred --cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcC
Confidence 566666543211 1111 11122222211 00 001111111222244556677799999
Q ss_pred CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHh-hcccCCeeeecCCCccccC
Q 015825 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKH-LGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 254 P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~i-i~~~~~~~~~~~~~~~~~~ 332 (399)
|++++||||++++|+.++..+.+.|+++.++ .++++++|+++.+...++++ +.+.+|.++..+++.+++.
T Consensus 219 p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~---------~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 219 PEVILMDEPASALDPIATSKIEDLIEELAEE---------YTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFE 289 (305)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHhcC---------CEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999876431 27899999999999999986 4668898888777776666
Q ss_pred CCcchh
Q 015825 333 LPADHS 338 (399)
Q Consensus 333 ~p~~~~ 338 (399)
.|....
T Consensus 290 ~~~~~~ 295 (305)
T PRK14264 290 NPESQR 295 (305)
T ss_pred CcccHH
Confidence 554333
No 269
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.68 E-value=5e-18 Score=152.36 Aligned_cols=146 Identities=18% Similarity=0.162 Sum_probs=105.4
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+ . ++.+++
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~----tv~~~l 96 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG-RVRLDGADISQWDPNELGDHVGYLPQDDELFS-G----SIAENI 96 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-eEEECCEEcccCCHHHHHhheEEECCCCcccc-C----cHHHHC
Confidence 44568999999999999999999999999999888 554322111 1111345899999876553 1 555554
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
.+ ...+++...+.+++.+|++++||||++++|+.++..+.+.++++.+
T Consensus 97 --------LS------------------------~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~ 144 (173)
T cd03246 97 --------LS------------------------GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA 144 (173)
T ss_pred --------cC------------------------HHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh
Confidence 01 1112223334478889999999999999999999999999987643
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
+ ..++++++|+++.+ ..+++++.+.+|.
T Consensus 145 ~--------~~tii~~sh~~~~~-~~~d~v~~l~~G~ 172 (173)
T cd03246 145 A--------GATRIVIAHRPETL-ASADRILVLEDGR 172 (173)
T ss_pred C--------CCEEEEEeCCHHHH-HhCCEEEEEECCC
Confidence 1 23889999999876 5788888777653
No 270
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.67 E-value=1.3e-17 Score=159.80 Aligned_cols=186 Identities=13% Similarity=0.092 Sum_probs=122.6
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
..+....+|++++|+||||||||||+++|+|++++..| .+..... .+++++....++.+ ++.+++.
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G-~I~~~g~---------~~~~~~~~~~~~~~----tv~enl~ 107 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG-KVDRNGE---------VSVIAISAGLSGQL----TGIENIE 107 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCE---------EeEEecccCCCCCC----cHHHHHH
Confidence 34455679999999999999999999999999999888 5443221 23444443222222 4555554
Q ss_pred HhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 205 VHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
+....++........ .++. +....++..+..+....++++..+.+++.+|++++||||++++|+.+++.+.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~ 187 (264)
T PRK13546 108 FKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIY 187 (264)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 322222222222221 1211 11111111112222234455666778999999999999999999999889988888
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
++.+ ...++|+++|+++++...+++++.+.+|.+...+++.++..
T Consensus 188 ~~~~--------~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 188 EFKE--------QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHH--------CCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 7642 13388999999999998899999999999887777655544
No 271
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.67 E-value=7.9e-18 Score=157.21 Aligned_cols=175 Identities=18% Similarity=0.153 Sum_probs=116.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++.+|+ . ++.+++
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~----tv~~nl 108 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG-QVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-R----SLQDNI 108 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc-EEEECCCchHHcCHHHHHhhEEEEecccHHHh-h----hHHHHh
Confidence 44568999999999999999999999999999999 555432221 1112345899999987664 2 667776
Q ss_pred HHhccccCCcHHHHHH---------HHHc---CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEA---------VADA---GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~---------~~~~---g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+..... ....+.+ .++. +....++-.+..+....++++..+.+++.+|++++||||++++|+.++
T Consensus 109 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 186 (226)
T cd03248 109 AYGLQSC--SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186 (226)
T ss_pred ccccCCC--CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 5532211 1111111 1111 111111111111222345556667799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
+.+.+.+.++.+ ..++++++|+++++. .+++++.+.+|.
T Consensus 187 ~~l~~~l~~~~~---------~~tii~~sh~~~~~~-~~d~i~~l~~g~ 225 (226)
T cd03248 187 QQVQQALYDWPE---------RRTVLVIAHRLSTVE-RADQILVLDGGR 225 (226)
T ss_pred HHHHHHHHHHcC---------CCEEEEEECCHHHHH-hCCEEEEecCCc
Confidence 999998887532 138899999999885 588888887663
No 272
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1e-17 Score=174.67 Aligned_cols=189 Identities=11% Similarity=0.107 Sum_probs=128.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-CcccceeeecCCCc-----cccccCCeeEEecChH---HHHHHHhhhh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFP-SMFGFSVSHTTRAP-----RAMEKDGVHYHFTERS---VMEKAIKDGK 198 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~---lf~~~~~~~~ 198 (399)
+...+|++++|+||||||||||+++|+|+.+ +..| .+....+.. ......+++|+||++. +++.+ +
T Consensus 283 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~----t 357 (506)
T PRK13549 283 FSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEG-EIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM----G 357 (506)
T ss_pred eEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCc-EEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCC----C
Confidence 4456999999999999999999999999988 4788 554322111 1111345899999853 44443 6
Q ss_pred hHHHHHHhc--cccC---CcH----HHHHHHHHcC-Cc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 199 FLEFASVHG--NLYG---TSV----EAVEAVADAG-KR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 199 ~~E~~~~~~--~~~g---~~~----~~i~~~~~~g-~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
+.+++.+.. ..++ ... ..+.+.++.. .. ...+..+..+....+++...+.+++.+|++++||||++++|
T Consensus 358 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD 437 (506)
T PRK13549 358 VGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437 (506)
T ss_pred HHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 666665421 1111 111 1222333321 11 11122222233345667777889999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
+.+.+.+.+.+..+.++ ..++|+++||++++...+++++.+.+|.+...+++.+
T Consensus 438 ~~~~~~l~~~l~~l~~~--------g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 438 VGAKYEIYKLINQLVQQ--------GVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HhHHHHHHHHHHHHHHC--------CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999886532 2388999999999999999999999998887666553
No 273
>PLN03211 ABC transporter G-25; Provisional
Probab=99.67 E-value=7.7e-18 Score=180.02 Aligned_cols=203 Identities=13% Similarity=0.124 Sum_probs=140.0
Q ss_pred HHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc--ccceeeecCCCccccccCCeeEEecChHHHHH
Q 015825 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM--FGFSVSHTTRAPRAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 115 ~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~--~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~ 192 (399)
+.++.+.+..+.+....+|++++|+||||||||||+++|+|..++. .| .+.....+........++|++|+..+++.
T Consensus 76 ~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG-~I~inG~~~~~~~~~~i~yv~Q~~~l~~~ 154 (659)
T PLN03211 76 RQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTG-TILANNRKPTKQILKRTGFVTQDDILYPH 154 (659)
T ss_pred ccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeE-EEEECCEECchhhccceEEECcccccCCc
Confidence 3444445555555566799999999999999999999999998763 67 55543322211122458999999877766
Q ss_pred HHhhhhhHHHHHHhcccc---CCcHHHH----HHHHHc-CCceEE-----ecchhhHHHHHcCCcceeEEEEcCCChHHH
Q 015825 193 AIKDGKFLEFASVHGNLY---GTSVEAV----EAVADA-GKRCIL-----DIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~---g~~~~~i----~~~~~~-g~~~vl-----dld~~g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
+ ++.|++.+...++ ....++. .+.++. ++.... +-...++....+++...+.+++.+|++++|
T Consensus 155 l----TV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlL 230 (659)
T PLN03211 155 L----TVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 230 (659)
T ss_pred C----CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEE
Confidence 5 7888877654332 1222222 222222 111110 111122333456677777899999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHH-HHHHHHHHhhcccCCeeeecCCCccc
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLE-ECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdle-ea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
|||++++|..++..+.+.|+++.++ ..++++++|+++ ++.+.+++++.+.+|+++..+++.+.
T Consensus 231 DEPtsgLD~~~~~~l~~~L~~l~~~--------g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~ 294 (659)
T PLN03211 231 DEPTSGLDATAAYRLVLTLGSLAQK--------GKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDA 294 (659)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHhC--------CCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHH
Confidence 9999999999999999999886531 238899999987 58888999999999999887776554
No 274
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.67 E-value=1.7e-17 Score=161.99 Aligned_cols=202 Identities=13% Similarity=0.133 Sum_probs=142.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec-------CCCccccccCCeeEEecCh--HHHHHHHhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT-------TRAPRAMEKDGVHYHFTER--SVMEKAIKD 196 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t-------tr~~~~~~~~~i~yvfq~~--~lf~~~~~~ 196 (399)
.+....+|++++++|.||||||||-.+|.+++++. | .|... ++......++..-.|||++ ++-|.|
T Consensus 306 isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G-~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRm--- 380 (534)
T COG4172 306 ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-G-EIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRM--- 380 (534)
T ss_pred ceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-c-eEEECCccccccChhhhhhhhhhceEEEeCCCCCCCccc---
Confidence 33455699999999999999999999999999885 6 45432 2221222234577999996 234554
Q ss_pred hhhHHHHHHhcccc--CCcHHHHHHHHHcCCceEEecchhhHHH-------HHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 197 GKFLEFASVHGNLY--GTSVEAVEAVADAGKRCILDIDVQGARS-------VRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 197 ~~~~E~~~~~~~~~--g~~~~~i~~~~~~g~~~vldld~~g~~~-------l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.+.+.-..... ..+..+..+.+.+.+.. +.+|+..... .++|+...+.+++..|++.+||||++++|
T Consensus 381 -tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~E-VGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD 458 (534)
T COG4172 381 -TVGQIIEEGLRVHEPKLSAAERDQRVIEALEE-VGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458 (534)
T ss_pred -CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHH-cCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh
Confidence 4444433222221 12233222222221111 1234433332 35667777789999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
..-+.++.+.|+.++++.+ ..+++++||+.-+-+.++++++|.+|+++.+|..+.++.+|.......
T Consensus 459 ~SVQaQvv~LLr~LQ~k~~-------LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 459 RSVQAQVLDLLRDLQQKHG-------LSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred HHHHHHHHHHHHHHHHHhC-------CeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 9889999999999887653 388999999999999999999999999999999999999998665443
No 275
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.67 E-value=9.8e-18 Score=177.90 Aligned_cols=189 Identities=19% Similarity=0.189 Sum_probs=137.6
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|+.++|+|+||||||||++.|+|+++|..| .+.....+. ....++.++|++|++.+|+. ++.+
T Consensus 360 i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G-~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-----Ti~~ 433 (592)
T PRK10790 360 INLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG-EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-----TFLA 433 (592)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCc-eEEECCEEhhhCCHHHHHhheEEEccCCccccc-----hHHH
Confidence 3345569999999999999999999999999999988 665433221 11223568999999988764 7888
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CCc-----------eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GKR-----------CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~~-----------~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
|+.+.. ..+.+++.++++. +.. ..+.-.-......++|+...+.+++.+|++++||||++++|+.
T Consensus 434 NI~~~~---~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~ 510 (592)
T PRK10790 434 NVTLGR---DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510 (592)
T ss_pred HHHhCC---CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 888764 2344555544432 111 1110000112223566677777999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+++.+.+.+.++.. .+|+|+++|+++. +..+|+++.+++|+++..|++.+++..
T Consensus 511 t~~~i~~~l~~~~~---------~~tvIivtHr~~~-l~~~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 511 TEQAIQQALAAVRE---------HTTLVVIAHRLST-IVEADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHHHHHHHHHHHhC---------CCEEEEEecchHH-HHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999998877431 2489999999844 557999999999999999998887744
No 276
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1e-17 Score=161.16 Aligned_cols=199 Identities=14% Similarity=0.056 Sum_probs=124.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccc-cCCeeEEecChHHHHHHHhhhhhH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAME-KDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~-~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+........... ...++|+||++.+.... ...+.
T Consensus 22 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~--~~~~~ 98 (272)
T PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASG-KISILGQPTRQALQKNLVAYVPQSEEVDWSF--PVLVE 98 (272)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEhHHhhccceEEEeccccccccCC--Ccchh
Confidence 33334455569999999999999999999999999999888 5543322211111 13489999986431110 01233
Q ss_pred HHHHHh--cc--ccCCc----HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 201 EFASVH--GN--LYGTS----VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 201 E~~~~~--~~--~~g~~----~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
+++.+. .. .+... ...+...++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.++
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~ 178 (272)
T PRK15056 99 DVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178 (272)
T ss_pred hheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 333211 00 01111 1122222222 111111111111222344556666789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+.+.|.++..+ ..++++++|+++++...+++++.+ +|.+...+++.++..
T Consensus 179 ~~l~~~L~~~~~~--------g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 179 ARIISLLRELRDE--------GKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 9999999876431 237899999999999889987666 788877777665543
No 277
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.67 E-value=9.5e-18 Score=180.93 Aligned_cols=187 Identities=16% Similarity=0.113 Sum_probs=136.6
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|+.++|+|+||||||||++.|+|+++|..| .+.....+.+ ...++.++|++|++.+|.. ++.|
T Consensus 472 isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G-~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-----TI~e 545 (686)
T TIGR03797 472 VSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG-SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-----SIFE 545 (686)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEEcCcCCHHHHHhccEEEccCCccCcc-----cHHH
Confidence 3344569999999999999999999999999999999 6654332221 1223468999999887743 7889
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CCceEEecch-----------hhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GKRCILDIDV-----------QGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~-----------~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
|+.+... .+.+++.++++. +....+.--| ..+...++|+...+.+++.+|++++||||++++|+.
T Consensus 546 Ni~~~~~---~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~ 622 (686)
T TIGR03797 546 NIAGGAP---LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNR 622 (686)
T ss_pred HHhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 9877533 345555554443 2211110001 112334567777788999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+++.+.+.++++ ..|+|+++|.++. ...+|+++.+++|+++..|+.+++...
T Consensus 623 te~~i~~~L~~~-----------~~T~IiItHr~~~-i~~~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 623 TQAIVSESLERL-----------KVTRIVIAHRLST-IRNADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHHHHHHHh-----------CCeEEEEecChHH-HHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999888763 1389999999855 467999999999999999987776643
No 278
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.67 E-value=2.9e-17 Score=155.95 Aligned_cols=194 Identities=13% Similarity=0.107 Sum_probs=123.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhc--cCCcccceeeecCCC-----ccccccCCeeEEecChHHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKE--FPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~--~~~~~g~~i~~ttr~-----~~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+..+.+....+|++++|+||||||||||+++|+|+ +++..| .+...... .......+++|+||++.+++.+
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~- 99 (252)
T CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEG-DILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV- 99 (252)
T ss_pred eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCc-eEEECCEEcccCChhhhheeeEEEEeccccccccc-
Confidence 33334455668999999999999999999999997 467778 55432211 1111112477899987666543
Q ss_pred hhhhhHHHHHHhccc----cC---CcH----HHHHHHHHc-CCc-eEEecchh-hHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 195 KDGKFLEFASVHGNL----YG---TSV----EAVEAVADA-GKR-CILDIDVQ-GARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~----~g---~~~----~~i~~~~~~-g~~-~vldld~~-g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+..++..+.... .+ ... ..+.+.++. +.. ..++-.+. .+....+++...+.+++.+|++++||
T Consensus 100 ---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD 176 (252)
T CHL00131 100 ---SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILD 176 (252)
T ss_pred ---cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 344443322110 01 011 112222221 111 01111111 12333455566677999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHH-HHHhhcccCCeeeecCCCc
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN-LKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~-l~~ii~~~~~~~~~~~~~~ 328 (399)
||++++|+.+++.+.+.|.++.++ ..++|+++|+++.+... +++++.+.+|.++..+++.
T Consensus 177 EPt~~LD~~~~~~l~~~l~~~~~~--------g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 177 ETDSGLDIDALKIIAEGINKLMTS--------ENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhC--------CCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 999999999999999999886431 23889999999888765 7899999999888777654
No 279
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.67 E-value=1.3e-17 Score=152.84 Aligned_cols=172 Identities=17% Similarity=0.118 Sum_probs=112.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+..+.+....+|++++|+||||||||||+++|+|.+++..| .+....... .......++|++|...+++.+ +
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~----t 89 (198)
T TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG-EVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL----S 89 (198)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEEcccchHHhhhheEEeccCcccccCC----c
Confidence 33334455679999999999999999999999999999888 554322211 111124588999886655543 6
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
+.+++.+....++.....+.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|..+++.+.+.
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 169 (198)
T TIGR01189 90 ALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGL 169 (198)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 7777665433333222233333332 221112222222333345566677799999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHH
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEEC 306 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea 306 (399)
+.++.++ ..++++++|+....
T Consensus 170 l~~~~~~--------~~tii~~sH~~~~~ 190 (198)
T TIGR01189 170 LRAHLAR--------GGIVLLTTHQDLGL 190 (198)
T ss_pred HHHHHhC--------CCEEEEEEcccccc
Confidence 8876421 23788999976443
No 280
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.67 E-value=1.1e-17 Score=173.58 Aligned_cols=195 Identities=13% Similarity=0.097 Sum_probs=126.6
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHH--HHH--HHh
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSV--MEK--AIK 195 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~l--f~~--~~~ 195 (399)
...+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.. +.. ...
T Consensus 20 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G-~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 98 (490)
T PRK10938 20 QLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSG-ERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDT 98 (490)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCc-eEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhc
Confidence 334455679999999999999999999999999999888 554321111 01112347899997532 110 000
Q ss_pred hhhhHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 196 DGKFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
..++.++..+. ......+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+.+.+
T Consensus 99 ~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 174 (490)
T PRK10938 99 GRTTAEIIQDE----VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174 (490)
T ss_pred cccHHHhcccc----hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 11333332211 0111222333322 111111222222333456667777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
.+.|.++.++ ..++++++|+++.+...+++++.+.+|.++..+++.++.
T Consensus 175 ~~~l~~~~~~--------g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 175 AELLASLHQS--------GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHHHHhc--------CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999886532 238899999999999999999999999887766655443
No 281
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.67 E-value=1.2e-17 Score=176.87 Aligned_cols=189 Identities=15% Similarity=0.113 Sum_probs=136.5
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+||||||||||+++|+|+++|..| .+.....+. ....++.++|++|++.+|+. ++.+|+
T Consensus 364 l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-----Ti~~Ni 437 (582)
T PRK11176 364 FKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEG-EILLDGHDLRDYTLASLRNQVALVSQNVHLFND-----TIANNI 437 (582)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCc-eEEECCEEhhhcCHHHHHhhceEEccCceeecc-----hHHHHH
Confidence 44569999999999999999999999999999999 665433221 11223568999999877753 788888
Q ss_pred HHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+...- ....+++.++++. |....+.-.-..+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 438 ~~~~~~-~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~ 516 (582)
T PRK11176 438 AYARTE-QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516 (582)
T ss_pred hcCCCC-CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHH
Confidence 764211 1234444444332 112211111111233456677777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
..+.+.+.++. ..+|+|+++|+++ ....+|+++.+++|+++..|+..+++..
T Consensus 517 ~~i~~~l~~~~---------~~~tvI~VtHr~~-~~~~~D~Ii~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 517 RAIQAALDELQ---------KNRTSLVIAHRLS-TIEKADEILVVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HHHHHHHHHHh---------CCCEEEEEecchH-HHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99998888743 1348999999984 5677999999999999998987777644
No 282
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.66 E-value=8.6e-18 Score=156.37 Aligned_cols=179 Identities=15% Similarity=0.105 Sum_probs=120.0
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+...+|++++|+||||||||||+++|+|..++..| .+....... .......++|+||++.+++ . ++.+++
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~----tv~enl 98 (221)
T cd03244 25 FSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG-SILIDGVDISKIGLHDLRSRISIIPQDPVLFS-G----TIRSNL 98 (221)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC-EEEECCEEhHhCCHHHHhhhEEEECCCCcccc-c----hHHHHh
Confidence 44568999999999999999999999999999888 554432211 1112346899999977554 2 566766
Q ss_pred HHhccccCCcHHHHHHHHHc-CC-----------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GK-----------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~-----------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+... .....+.+.++. +. ...++-.+..+....+++...+.+++.+|++++||||++++|+.++
T Consensus 99 ~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~ 175 (221)
T cd03244 99 DPFGE---YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175 (221)
T ss_pred CcCCC---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 54321 122222222211 11 0000111111222234555666799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQ 325 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~ 325 (399)
+.+.+.++++.. ..++++++|+++++. .+++++.+.+|.+...+
T Consensus 176 ~~l~~~l~~~~~---------~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~ 219 (221)
T cd03244 176 ALIQKTIREAFK---------DCTVLTIAHRLDTII-DSDRILVLDKGRVVEFD 219 (221)
T ss_pred HHHHHHHHHhcC---------CCEEEEEeCCHHHHh-hCCEEEEEECCeEEecC
Confidence 999998887531 137889999998875 48999999888776554
No 283
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.66 E-value=5.5e-18 Score=152.71 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=109.0
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++.+|+ . ++.+++
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~----tv~~~i 95 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG-EITLDGVPVSDLEKALSSLISVLNQRPYLFD-T----TLRNNL 95 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-EEEECCEEHHHHHHHHHhhEEEEccCCeeec-c----cHHHhh
Confidence 344569999999999999999999999999999888 554332211 1112345899999876553 2 455554
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
. . .+....+++...+.+++.+|++++||||++++|+.+++.+.+.+.++.
T Consensus 96 --~---~------------------------~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~- 145 (178)
T cd03247 96 --G---R------------------------RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL- 145 (178)
T ss_pred --c---c------------------------cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-
Confidence 0 0 011112233344457889999999999999999999999998888752
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+ ..++++++|+++++. .+++++.+.+|.+..
T Consensus 146 ~--------~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~ 176 (178)
T cd03247 146 K--------DKTLIWITHHLTGIE-HMDKILFLENGKIIM 176 (178)
T ss_pred C--------CCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 1 238899999998874 688988888887653
No 284
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.66 E-value=1.9e-17 Score=180.93 Aligned_cols=188 Identities=19% Similarity=0.188 Sum_probs=139.9
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
...+|++++|+|||||||||+++.|.+++.|..| .+.....+.+ ...+..+|.|+|+|.+|.. ++.||+.
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G-~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-----tI~eNI~ 448 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSG-EVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-----TIRENIR 448 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCc-eEEEcCccchhcchHHHHhhcCeeeechhhhcc-----cHHHHHh
Confidence 3468999999999999999999999999999999 6665433322 1223468999999977753 7889988
Q ss_pred HhccccCCcHHHHHHHHHcCC-------------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 205 VHGNLYGTSVEAVEAVADAGK-------------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g~-------------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
|... ....+++.++.+... ..+-+-.++ +...++|+...+.+++.+|++++|||+|++||++++
T Consensus 449 ~G~~--dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se 525 (1228)
T KOG0055|consen 449 YGKP--DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESE 525 (1228)
T ss_pred cCCC--cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHH
Confidence 7532 123444444432211 011111111 222356677777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
..+++.|.++... -|.+++.|.+...-. +|.++.+.+|.++..|++.+++..++
T Consensus 526 ~~Vq~ALd~~~~g---------rTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~~G 579 (1228)
T KOG0055|consen 526 RVVQEALDKASKG---------RTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIALGG 579 (1228)
T ss_pred HHHHHHHHHhhcC---------CeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhccc
Confidence 9999999886532 189999999976654 99999999999999999999998874
No 285
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=6.1e-17 Score=149.60 Aligned_cols=183 Identities=18% Similarity=0.175 Sum_probs=132.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
+...+|+.++|+|+||||||||++.|+|.++|+.| .+..+.+-...... +.|+ + +.+ +..||+.+.+
T Consensus 48 f~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G-~v~v~G~v~~li~l-g~Gf--~-----pel----TGreNi~l~~ 114 (249)
T COG1134 48 FEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG-KVKVTGKVAPLIEL-GAGF--D-----PEL----TGRENIYLRG 114 (249)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc-eEEEcceEehhhhc-ccCC--C-----ccc----chHHHHHHHH
Confidence 56679999999999999999999999999999999 66554432212111 1221 1 233 7788998888
Q ss_pred cccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 208 NLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
.++|...+++.+..++ .+-.+++.....+......++...++...+|+++++||-++.-|+.-++.-.+++.++.
T Consensus 115 ~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~ 194 (249)
T COG1134 115 LILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELV 194 (249)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHH
Confidence 8899888877765543 12223333333333333444555567788999999999999988765555555565542
Q ss_pred HHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 283 EEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
++ .-++|+++||++.+.+.|++++.+++|.+...+++.+++
T Consensus 195 ~~--------~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 195 EK--------NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred Hc--------CCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHH
Confidence 21 238899999999999999999999999999999988665
No 286
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.66 E-value=2.5e-17 Score=178.37 Aligned_cols=186 Identities=15% Similarity=0.111 Sum_probs=135.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+||||||||||+++|+|+++|..| .+.....+.+ ...++.++|++|++.+|.. ++.||+
T Consensus 500 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G-~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-----Ti~eNi 573 (710)
T TIGR03796 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG-EILFDGIPREEIPREVLANSVAMVDQDIFLFEG-----TVRDNL 573 (710)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEeHHHCCHHHHHhheeEEecCChhhhc-----cHHHHh
Confidence 44569999999999999999999999999999999 6655433221 1224568999999887753 788988
Q ss_pred HHhccccCCcHHHHHHHHHc-C-----------CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-G-----------KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g-----------~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+... ..+.+++.++++. + ....+.-.-..+...++|+...+.+++.+|++++||||++++|..++
T Consensus 574 ~l~~~--~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te 651 (710)
T TIGR03796 574 TLWDP--TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETE 651 (710)
T ss_pred hCCCC--CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHH
Confidence 76432 2344444444332 1 11111111111223456677777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.+.+.+ . ..|+|+++|.++.. ..+|+++.+++|+++..|+..++...
T Consensus 652 ~~i~~~l~~----~-------~~T~IiitHrl~~i-~~~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 652 KIIDDNLRR----R-------GCTCIIVAHRLSTI-RDCDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred HHHHHHHHh----c-------CCEEEEEecCHHHH-HhCCEEEEEeCCEEEEecCHHHHHHc
Confidence 999988874 1 24899999998654 56999999999999999987776643
No 287
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.66 E-value=1.9e-17 Score=153.61 Aligned_cols=178 Identities=13% Similarity=0.029 Sum_probs=117.0
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee-ecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-HTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH 206 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~-~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~ 206 (399)
....+|++++|+||||||||||+++|+|+.++..| .+. ...... .++ +...+++.+ ++.+++.+.
T Consensus 8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG-~i~~~~~~~~------~~~---~~~~l~~~l----tv~enl~~~ 73 (213)
T PRK15177 8 FVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG-DFIGLRGDAL------PLG---ANSFILPGL----TGEENARMM 73 (213)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCC-CEEEecCcee------ccc---cccccCCcC----cHHHHHHHH
Confidence 44568999999999999999999999999999999 443 211100 011 122334443 667777665
Q ss_pred ccccCCcHHHHHHHHHc--CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 015825 207 GNLYGTSVEAVEAVADA--GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284 (399)
Q Consensus 207 ~~~~g~~~~~i~~~~~~--g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~ 284 (399)
...++.........+.. +.....+..+..+....+++...+.+++.+|++.+||||+.++|+.++..+.+.+.+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~ 153 (213)
T PRK15177 74 ASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ 153 (213)
T ss_pred HHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC
Confidence 44444443333222211 1100111111122223455666777999999999999999999998888888877543211
Q ss_pred HHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 285 IKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
.++++++|+++++...+++++.+.+|.++..++..
T Consensus 154 ---------~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 188 (213)
T PRK15177 154 ---------KGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLA 188 (213)
T ss_pred ---------CcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHH
Confidence 26789999999998899999999999888765543
No 288
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.66 E-value=2.5e-17 Score=143.66 Aligned_cols=190 Identities=16% Similarity=0.163 Sum_probs=123.4
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee-----cCCCccccccCCeeEEecChHHHHH
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH-----TTRAPRAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~-----ttr~~~~~~~~~i~yvfq~~~lf~~ 192 (399)
+...+....++...+|+.++|+||||||||||+++++.+++|..| .+.. ++-.+... +..++|+-|.+.+|..
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G-~l~f~Ge~vs~~~pea~-Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSG-TLLFEGEDVSTLKPEAY-RQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCc-eEEEcCccccccChHHH-HHHHHHHHcCcccccc
Confidence 334444445556679999999999999999999999999999998 4433 22222222 3348899999988864
Q ss_pred HHhhhhhHHHHHHhcccc--CCcHHHHHHHHHc-CC-ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 193 AIKDGKFLEFASVHGNLY--GTSVEAVEAVADA-GK-RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~--g~~~~~i~~~~~~-g~-~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+|+.|.-..+ ...+......+.. ++ ..+++-....+....+|+...+.-|..-|++++|||+++++|+
T Consensus 92 -----tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~ 166 (223)
T COG4619 92 -----TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDE 166 (223)
T ss_pred -----chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcCh
Confidence 5667766543332 2233333333322 11 1111111101111112233333455667999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCee
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIA 321 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~ 321 (399)
.+.+.+.+.+-++-++ ....++.+|||.+++....++++....|.+
T Consensus 167 ~nkr~ie~mi~~~v~~-------q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 167 SNKRNIEEMIHRYVRE-------QNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhHHHHHHHHHHHhhh-------hceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999998888877542 233678999999999999999888776643
No 289
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.66 E-value=2.5e-17 Score=171.45 Aligned_cols=186 Identities=12% Similarity=0.106 Sum_probs=125.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-cccceeeecCCCc-----cccccCCeeEEecChH---HHHHHHhhhh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-MFGFSVSHTTRAP-----RAMEKDGVHYHFTERS---VMEKAIKDGK 198 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~---lf~~~~~~~~ 198 (399)
....+|++++|+||||||||||+++|+|+.+| ..| .+....+.. ......+++|+||+.. +++.+ +
T Consensus 281 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~----t 355 (500)
T TIGR02633 281 FSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEG-NVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPIL----G 355 (500)
T ss_pred eEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCe-EEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCC----C
Confidence 34469999999999999999999999999985 678 565432211 1111346899999863 45443 5
Q ss_pred hHHHHHHhc--cc---cCCcH----HHHHHHHHcCCc--eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 199 FLEFASVHG--NL---YGTSV----EAVEAVADAGKR--CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 199 ~~E~~~~~~--~~---~g~~~----~~i~~~~~~g~~--~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
+.+++.+.. .. +.... ..+.+.++.... ...+..+..+....++++..+.+++.+|++++||||++++|
T Consensus 356 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD 435 (500)
T TIGR02633 356 VGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435 (500)
T ss_pred HHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 556554421 11 11111 123333332111 01121222233345666777779999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCC
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQT 326 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~ 326 (399)
+.+++.+.+.+..+.++ ..++|+++||++++...+++++.+.+|.+....+
T Consensus 436 ~~~~~~l~~~l~~l~~~--------g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 436 VGAKYEIYKLINQLAQE--------GVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HhHHHHHHHHHHHHHhC--------CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999886532 2378999999999999999999999888775443
No 290
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.66 E-value=1.3e-17 Score=176.28 Aligned_cols=189 Identities=16% Similarity=0.180 Sum_probs=137.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|+.++|+||||||||||++.|+|+++|..| .+.....+.+ ...++.++|++|++.+|.. ++.|
T Consensus 359 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-----ti~~ 432 (574)
T PRK11160 359 LSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQG-EILLNGQPIADYSEAALRQAISVVSQRVHLFSA-----TLRD 432 (574)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEhhhCCHHHHHhheeEEcccchhhcc-----cHHH
Confidence 3344569999999999999999999999999999999 5554322211 1223468999999877753 7888
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHH-----------HHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGAR-----------SVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~-----------~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
|+.+... ..+.+++.++++. +...+++- |+|.. ..++|+...+.+++.+|++++||||++++|+.
T Consensus 433 Ni~~~~~--~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~ 509 (574)
T PRK11160 433 NLLLAAP--NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509 (574)
T ss_pred HhhcCCC--ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 8877532 2344555554443 22222222 33222 23456667777999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+++.+++.+.++.+ ..|+++++|+++.. ..+|+++.+++|+++..++..++...
T Consensus 510 t~~~i~~~l~~~~~---------~~tviiitHr~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 510 TERQILELLAEHAQ---------NKTVLMITHRLTGL-EQFDRICVMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred HHHHHHHHHHHHcC---------CCEEEEEecChhHH-HhCCEEEEEeCCeEEEeCCHHHHHhc
Confidence 99999999887531 23889999998765 56999999999999988887766544
No 291
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.65 E-value=3.4e-17 Score=150.42 Aligned_cols=162 Identities=12% Similarity=0.128 Sum_probs=114.0
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhc--cCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHhhh
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKE--FPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~--~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
..+....+|++++|+||||||||||+++|+|. .++..| .+.....+. .......++|+||++.+++..
T Consensus 18 ~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~---- 92 (200)
T cd03217 18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEG-EILFKGEDITDLPPEERARLGIFLAFQYPPEIPGV---- 92 (200)
T ss_pred ccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCcc-EEEECCEECCcCCHHHHhhCcEEEeecChhhccCc----
Confidence 34455669999999999999999999999999 467788 554322111 111123589999987666533
Q ss_pred hhHHHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
++.++.... . ..+....+++...+.+++.+|++++||||++++|+.+.+.+.+.
T Consensus 93 ~~~~~l~~~---------------~-----------~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~ 146 (200)
T cd03217 93 KNADFLRYV---------------N-----------EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEV 146 (200)
T ss_pred cHHHHHhhc---------------c-----------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 333332000 0 00111223344455588889999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHH-HHHHhhcccCCeeeecC
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYE-NLKKHLGLDGSIATNHQ 325 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~-~l~~ii~~~~~~~~~~~ 325 (399)
|.++.++ ..++++++|+++.+.. .+++++.+.+|.+...+
T Consensus 147 L~~~~~~--------~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~ 187 (200)
T cd03217 147 INKLREE--------GKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG 187 (200)
T ss_pred HHHHHHC--------CCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc
Confidence 9886431 2388999999998877 68999999999887665
No 292
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.65 E-value=2.6e-17 Score=146.41 Aligned_cols=138 Identities=14% Similarity=0.183 Sum_probs=100.5
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----ccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----AMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
.+....+|++++|+||||||||||+++|+|+.++..| .+........ ......++|+||
T Consensus 19 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~v~~~g~~~~~~~~~~~~~~~i~~~~q--------------- 82 (163)
T cd03216 19 VSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSG-EILVDGKEVSFASPRDARRAGIAMVYQ--------------- 82 (163)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEECCcCCHHHHHhcCeEEEEe---------------
Confidence 3455679999999999999999999999999999888 4543221110 111223566655
Q ss_pred HHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 201 EFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
.+ ...+++...+.+++.+|++++||||++++|..+++.+.+.+++
T Consensus 83 -----------LS------------------------~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 83 -----------LS------------------------VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred -----------cC------------------------HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 00 0111222233477889999999999999999999999999987
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
+.++ ..++++++|+++++...+++++.+.+|.++
T Consensus 128 ~~~~--------~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 128 LRAQ--------GVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred HHHC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 6431 238899999999988889999998888664
No 293
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.65 E-value=2.2e-17 Score=172.22 Aligned_cols=188 Identities=12% Similarity=0.098 Sum_probs=126.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChH---HHHHHHhhhhhHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERS---VMEKAIKDGKFLE 201 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~---lf~~~~~~~~~~E 201 (399)
..+|++++|+||||||||||+++|+|+.+|..| .+....... ......+++|+||++. +|+.+ ++.+
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~----t~~~ 360 (510)
T PRK15439 286 VRAGEILGLAGVVGAGRTELAETLYGLRPARGG-RIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA----PLAW 360 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc-EEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC----cHHH
Confidence 358999999999999999999999999999888 554322111 1111246899999742 44433 4445
Q ss_pred HHHHh--c--cccCCcH---HHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 202 FASVH--G--NLYGTSV---EAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 202 ~~~~~--~--~~~g~~~---~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++... . ..+.... +.+.+.++. +.. ...+-.+..+....++++..+.+++.+|++++||||++++|+.+.+
T Consensus 361 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~ 440 (510)
T PRK15439 361 NVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARN 440 (510)
T ss_pred HHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHH
Confidence 44221 0 0111111 122222322 111 1112222223333566677777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
.+.+.|+++.++ ..++|+++||++++...+++++.+.+|.++..+++.++
T Consensus 441 ~l~~~l~~l~~~--------g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 441 DIYQLIRSIAAQ--------NVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHHHHHHhC--------CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999887532 23899999999999999999999999988877665533
No 294
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.65 E-value=3.1e-17 Score=177.17 Aligned_cols=187 Identities=14% Similarity=0.146 Sum_probs=135.4
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+....+|+.++|+||||||||||+++|+|+++|..| .+.....+.. ...++.++|++|++.+|.. ++.||
T Consensus 485 ~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G-~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-----TI~eN 558 (694)
T TIGR03375 485 SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG-SVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-----TLRDN 558 (694)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEhhhCCHHHHHhccEEECCChhhhhh-----hHHHH
Confidence 344569999999999999999999999999999999 6654332211 1223468999999887753 78899
Q ss_pred HHHhccccCCcHHHHHHHHHc-C-----------CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 203 ASVHGNLYGTSVEAVEAVADA-G-----------KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~-g-----------~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+.+.... .+.+++.++++. + ....+.-.-..+...++|+...+.+++.+|++++||||++++|+.+
T Consensus 559 i~~~~~~--~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~t 636 (694)
T TIGR03375 559 IALGAPY--ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636 (694)
T ss_pred HhCCCCC--CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 8775321 344555444432 1 1111110001122335667777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
++.+++.+.++.+ ..|+++++|+++. ...+|+++.+++|+++..|+.++++
T Consensus 637 e~~i~~~l~~~~~---------~~T~iiItHrl~~-~~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 637 EERFKDRLKRWLA---------GKTLVLVTHRTSL-LDLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred HHHHHHHHHHHhC---------CCEEEEEecCHHH-HHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999887532 3489999999964 5789999999999999888876654
No 295
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=5.8e-17 Score=152.33 Aligned_cols=176 Identities=13% Similarity=0.096 Sum_probs=128.4
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH 206 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~ 206 (399)
++...+|++++|+|.|||||||+.++|++++.|+.| .+.......... . ..... ..+.+.+...
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G-~i~f~g~~i~~~-----~-----~~~~~-----~~v~elL~~V 96 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG-EILFEGKDITKL-----S-----KEERR-----ERVLELLEKV 96 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc-eEEEcCcchhhc-----c-----hhHHH-----HHHHHHHHHh
Confidence 355679999999999999999999999999999999 665433321110 0 00000 0122222221
Q ss_pred ccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 015825 207 GNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK 286 (399)
Q Consensus 207 ~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~ 286 (399)
+ .+.+.. .. .|..+...++|+...+.+++.+|++.++|||++++|...+.++...+..++++++
T Consensus 97 g----l~~~~~----~r--------yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~ 160 (268)
T COG4608 97 G----LPEEFL----YR--------YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG 160 (268)
T ss_pred C----CCHHHh----hc--------CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC
Confidence 1 111111 01 1222233455666667799999999999999999999999999999999988764
Q ss_pred hccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 287 QGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 287 ~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
. ++++++||+..+...++++.+|..|.++..+...+++..|.+.....
T Consensus 161 l-------t~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~ 208 (268)
T COG4608 161 L-------TYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKA 208 (268)
T ss_pred C-------eEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHHH
Confidence 4 89999999999999999999999999999999999999987766554
No 296
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.65 E-value=4.2e-17 Score=171.80 Aligned_cols=186 Identities=14% Similarity=0.023 Sum_probs=124.5
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhh
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
..+....+....+|++++|+||||||||||+++|+|+++|..| .+..... ..++|+||++.+++.+ ++
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G-~i~~~~~-------~~i~~v~Q~~~~~~~~----tv 87 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEG-EARPAPG-------IKVGYLPQEPQLDPEK----TV 87 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEecCC-------CEEEEEecCCCCCCCC----cH
Confidence 3444445556679999999999999999999999999999888 5543211 2489999997665543 55
Q ss_pred HHHHHHhcc-c-------------cCCc--------------------------HHHHHHHHHcCCceEEecchhhHHHH
Q 015825 200 LEFASVHGN-L-------------YGTS--------------------------VEAVEAVADAGKRCILDIDVQGARSV 239 (399)
Q Consensus 200 ~E~~~~~~~-~-------------~g~~--------------------------~~~i~~~~~~g~~~vldld~~g~~~l 239 (399)
.+++.+... . +... ...+...+........+..+..+...
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgG 167 (556)
T PRK11819 88 RENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGG 167 (556)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHH
Confidence 555443210 0 0101 01111111110000011112222333
Q ss_pred HcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 240 RASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 240 ~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
.++++..+.+++.+|++++||||++++|+.+...+.+.|+++. .++|+++|+++.+...+++++.+.+|
T Consensus 168 qkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-----------~tviiisHd~~~~~~~~d~i~~l~~g 236 (556)
T PRK11819 168 ERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-----------GTVVAVTHDRYFLDNVAGWILELDRG 236 (556)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-----------CeEEEEeCCHHHHHhhcCeEEEEeCC
Confidence 4566677779999999999999999999999988888877631 28899999999999999999999998
Q ss_pred eee-ecCCCc
Q 015825 320 IAT-NHQTSP 328 (399)
Q Consensus 320 ~~~-~~~~~~ 328 (399)
.++ ..+...
T Consensus 237 ~i~~~~g~~~ 246 (556)
T PRK11819 237 RGIPWEGNYS 246 (556)
T ss_pred EEEEecCCHH
Confidence 875 444433
No 297
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.64 E-value=2.9e-17 Score=151.09 Aligned_cols=171 Identities=18% Similarity=0.142 Sum_probs=114.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
+..+.+....+|++++|+||||||||||+++|+|+.++..| .+.... .++|+||++.+|+ . ++.+
T Consensus 20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G-~i~~~g---------~i~~~~q~~~l~~-~----t~~e 84 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG-SVSVPG---------SIAYVSQEPWIQN-G----TIRE 84 (204)
T ss_pred eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCC-eEEEcC---------EEEEEecCchhcc-C----cHHH
Confidence 33344455679999999999999999999999999999999 555432 3899999987653 2 7778
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CC-----------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GK-----------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~-----------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+.... ......+..+. +. ...++..+..+....+++...+.+++.+|++.++|||++++|+.
T Consensus 85 nl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 161 (204)
T cd03250 85 NILFGKPF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAH 161 (204)
T ss_pred HhccCCCc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 77664322 11122221111 11 11111111122223345566667999999999999999999998
Q ss_pred cHHHHHHH-HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 270 TEDQILKR-LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 270 ~~e~i~~~-L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
+.+.+.+. +....+ ...++|+++|+++.+.. +++++.+.+|
T Consensus 162 ~~~~l~~~ll~~~~~--------~~~tvi~~sh~~~~~~~-~d~i~~l~~G 203 (204)
T cd03250 162 VGRHIFENCILGLLL--------NNKTRILVTHQLQLLPH-ADQIVVLDNG 203 (204)
T ss_pred HHHHHHHHHHHHhcc--------CCCEEEEEeCCHHHHhh-CCEEEEEeCC
Confidence 87777664 443321 12388999999988776 8887777654
No 298
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.64 E-value=4.2e-17 Score=149.07 Aligned_cols=168 Identities=14% Similarity=0.076 Sum_probs=109.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
.+....+|++++|+||||||||||+++|+|..++..| .+.....+........++|+++...+++.+ ++.+++.+
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~----tv~~~l~~ 93 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSG-NIYYKNCNINNIAKPYCTYIGHNLGLKLEM----TVFENLKF 93 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCcccChhhhhhEEeccCCcCCCccC----CHHHHHHH
Confidence 3445568999999999999999999999999999999 555433322111123478888876544444 67777766
Q ss_pred hccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~ 284 (399)
....++ ..+.+.+.++. +.....+-....+....+++...+.+++.+|++++||||++++|+.+++.+.+.++...+
T Consensus 94 ~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~- 171 (195)
T PRK13541 94 WSEIYN-SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN- 171 (195)
T ss_pred HHHhcc-cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-
Confidence 443333 22233333322 211111111112222345556667799999999999999999999999999888875321
Q ss_pred HHhccCCCcceEEEeCCCHHHHH
Q 015825 285 IKQGKSSGIFDHILYNDKLEECY 307 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdleea~ 307 (399)
...++++++|+.+...
T Consensus 172 -------~~~tiii~sh~~~~i~ 187 (195)
T PRK13541 172 -------SGGIVLLSSHLESSIK 187 (195)
T ss_pred -------CCCEEEEEeCCccccc
Confidence 1238889999876543
No 299
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=1.6e-17 Score=148.78 Aligned_cols=144 Identities=20% Similarity=0.239 Sum_probs=103.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+ . ++.|++
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~----t~~e~l 96 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSG-EILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-G----TIRENI 96 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC-EEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-c----hHHHHh
Confidence 44568999999999999999999999999999888 454322111 1111345889999875543 2 455553
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
++ ...++++..+.+++.+|++++||||++++|+.+++.+.+.+.++.+
T Consensus 97 -----------------LS---------------~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~ 144 (171)
T cd03228 97 -----------------LS---------------GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK 144 (171)
T ss_pred -----------------hC---------------HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC
Confidence 00 1112223334477889999999999999999999999888887531
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
..++++++|+++.+.. +++++.+.+|
T Consensus 145 ---------~~tii~~sh~~~~~~~-~d~~~~l~~g 170 (171)
T cd03228 145 ---------GKTVIVIAHRLSTIRD-ADRIIVLDDG 170 (171)
T ss_pred ---------CCEEEEEecCHHHHHh-CCEEEEEcCC
Confidence 1388899999988865 8888777654
No 300
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.64 E-value=8.8e-15 Score=132.86 Aligned_cols=174 Identities=24% Similarity=0.227 Sum_probs=120.2
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~ 212 (399)
|++++|+||||||||||+++|++...+.+-.....+++..+.. ...+++...+.|..+...+.+.+.+.+.+++||+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAG---SENHIALSEQEFFTRAGQNLFALSWHANGLYYGV 78 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchh---HHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence 6899999999999999999999987542221222345543332 2245666666677767777887777888999999
Q ss_pred cHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCC
Q 015825 213 SVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSG 292 (399)
Q Consensus 213 ~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~ 292 (399)
+. .+...+..+..++++........+++.......++..+++.+++-+|+..++..+.+.+.+++.+... + .
T Consensus 79 ~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r~~~----~---~ 150 (186)
T PRK10078 79 GI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARLARAAR----Y---Q 150 (186)
T ss_pred cH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHHhhh----h---c
Confidence 98 48888888887777654433344444444455555666779999999998877777888888855321 1 1
Q ss_pred cceEE-EeCC-CHHHHHHHHHHhhccc
Q 015825 293 IFDHI-LYND-KLEECYENLKKHLGLD 317 (399)
Q Consensus 293 ~~t~V-iv~h-dleea~~~l~~ii~~~ 317 (399)
.++.+ +.++ +++++.+.+..++..+
T Consensus 151 ~ad~~vi~~~~s~ee~~~~i~~~l~~~ 177 (186)
T PRK10078 151 PQDCHTLNNDGSLRQSVDTLLTLLHLS 177 (186)
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHhhc
Confidence 24644 4443 6999999998877654
No 301
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.64 E-value=6.4e-17 Score=148.49 Aligned_cols=171 Identities=9% Similarity=0.051 Sum_probs=111.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+....+....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|++|...+++.. +
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~----t 90 (200)
T PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG-EILFERQSIKKDLCTYQKQLCFVGHRSGINPYL----T 90 (200)
T ss_pred EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-eEEECCCccccCHHHHHhheEEeccccccCcCC----C
Confidence 33334455569999999999999999999999999999888 555432221 111234689999987665544 6
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
+.++..+...... ....+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.
T Consensus 91 v~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~ 169 (200)
T PRK13540 91 LRENCLYDIHFSP-GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITK 169 (200)
T ss_pred HHHHHHHHHhcCc-chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHH
Confidence 7777665421111 11223333332 111111211222222345566677799999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHH
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEEC 306 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea 306 (399)
|+++.++ ..++++++|+.+..
T Consensus 170 l~~~~~~--------~~tiii~sh~~~~~ 190 (200)
T PRK13540 170 IQEHRAK--------GGAVLLTSHQDLPL 190 (200)
T ss_pred HHHHHHc--------CCEEEEEeCCchhc
Confidence 9886421 33788999986443
No 302
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.2e-17 Score=171.62 Aligned_cols=187 Identities=16% Similarity=0.177 Sum_probs=141.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
..+|++++|+||||+||||+++.|..++.|..| .|.....+.+. ..++.+|+|-|+|.+|.. ++.||+.|
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG-~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-----sI~eNI~Y 564 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFYDPTSG-RILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-----SIRENIAY 564 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC-eEEECCeehhhcCHHHHHHHeeeeeccceeecc-----cHHHHHhc
Confidence 469999999999999999999999999999999 55544333221 223569999999988854 78899988
Q ss_pred hccccCCcHHHHHHHHHcCC-c-eEEe--------cchhh--HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 206 HGNLYGTSVEAVEAVADAGK-R-CILD--------IDVQG--ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~g~-~-~vld--------ld~~g--~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
... ..+.+++..+.+... . .+.. +...| +...++|+...+.+|+.+|.+++|||.|++||.+++..
T Consensus 565 G~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~l 642 (716)
T KOG0058|consen 565 GLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYL 642 (716)
T ss_pred CCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHH
Confidence 755 455666665443211 1 1111 11111 11235677778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+++.|.+..+. -|++++.|-+ .+++.+++++++++|++++.|+..+++..|
T Consensus 643 Vq~aL~~~~~~---------rTVlvIAHRL-STV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 643 VQEALDRLMQG---------RTVLVIAHRL-STVRHADQIVVIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred HHHHHHHhhcC---------CeEEEEehhh-hHhhhccEEEEEcCCeEEecccHHHHhhCc
Confidence 99999876533 2888999988 456688999999999999999999999887
No 303
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.64 E-value=1.1e-16 Score=151.45 Aligned_cols=194 Identities=13% Similarity=0.074 Sum_probs=120.4
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc--CCcccceeeecCCCcc-----ccccCCeeEEecChHHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSHTTRAPR-----AMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~--~~~~g~~i~~ttr~~~-----~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+..+.+....+|++++|+||||||||||+++|+|+. ++..| .+........ .....+++|++|++.+++.+
T Consensus 16 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~- 93 (248)
T PRK09580 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG-TVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV- 93 (248)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCce-EEEECCCccccCCHHHHhhcceEEEecCchhccch-
Confidence 333344556699999999999999999999999995 57788 5544322211 11124589999987665533
Q ss_pred hhhhhHHHHHHh-ccc--c-C---CcH----HHHHHHHHc-CCc-eEEecchh-hHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 195 KDGKFLEFASVH-GNL--Y-G---TSV----EAVEAVADA-GKR-CILDIDVQ-GARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 195 ~~~~~~E~~~~~-~~~--~-g---~~~----~~i~~~~~~-g~~-~vldld~~-g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+..++.... ... + . ... +.+.+.++. +.. ...+..+. .+....+++...+.+++.+|++++||
T Consensus 94 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLD 170 (248)
T PRK09580 94 ---SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD 170 (248)
T ss_pred ---hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 112221110 000 0 0 011 111111111 000 00000000 12223345566677999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHH-HHHhhcccCCeeeecCCCc
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN-LKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~-l~~ii~~~~~~~~~~~~~~ 328 (399)
||++++|+.+.+.+.+.++++..+ ..++++++|+++.+... +++++.+.+|.++..+++.
T Consensus 171 EPt~~LD~~~~~~l~~~l~~l~~~--------~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 171 ESDSGLDIDALKIVADGVNSLRDG--------KRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred CCCccCCHHHHHHHHHHHHHHHhC--------CCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 999999999999999888876421 23889999999887765 6888888888887766544
No 304
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.64 E-value=2.9e-17 Score=177.72 Aligned_cols=187 Identities=18% Similarity=0.162 Sum_probs=135.4
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+||||||||||++.|+|+++|..| .+.....+.. ...++.++|++|++.+|.. ++.||+
T Consensus 495 l~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G-~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-----TI~eNi 568 (708)
T TIGR01193 495 LTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSG-EILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-----SILENL 568 (708)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCc-EEEECCEEHHHcCHHHHHHheEEEecCceehhH-----HHHHHH
Confidence 44568999999999999999999999999999999 6654432221 1223468999999887753 788998
Q ss_pred HHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... ..+.+++.++++. |....+.-.-..+...++|+...+.+++.+|++++|||||+++|..++
T Consensus 569 ~l~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te 647 (708)
T TIGR01193 569 LLGAKE-NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE 647 (708)
T ss_pred hccCCC-CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHH
Confidence 875221 2334444443332 111111111112233456777778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+.+.+..++ ..|+|+++|+++. ...+|+++.+++|+++..|+..++..
T Consensus 648 ~~i~~~L~~~~----------~~T~IiitHr~~~-~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 648 KKIVNNLLNLQ----------DKTIIFVAHRLSV-AKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHHHhc----------CCEEEEEecchHH-HHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99988887531 2389999999864 57899999999999998888776654
No 305
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.64 E-value=2e-17 Score=149.34 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=105.1
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
+.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+|| .
T Consensus 17 ~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G-~v~~~g~~~~~~~~~~~~~~i~~~~q---~----------- 81 (180)
T cd03214 17 DLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSG-EILLDGKDLASLSPKELARKIAYVPQ---A----------- 81 (180)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCcCCHHHHHHHHhHHHH---H-----------
Confidence 33445569999999999999999999999999999888 5543221110 001112445444 0
Q ss_pred HHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 201 EFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
... .+.. +. ... .+..+....+++...+.+++.+|++.+||||++++|+.+.+.+.+.+.+
T Consensus 82 --l~~----~gl~-~~----~~~--------~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~ 142 (180)
T cd03214 82 --LEL----LGLA-HL----ADR--------PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRR 142 (180)
T ss_pred --HHH----cCCH-hH----hcC--------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 000 0110 00 000 0001111223344455688899999999999999999999999999988
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+..+. ..++++++|+++++...+++++.+.+|.+..
T Consensus 143 ~~~~~-------~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 143 LARER-------GKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred HHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 65431 2388999999999988999999998887653
No 306
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.64 E-value=3e-17 Score=156.55 Aligned_cols=188 Identities=11% Similarity=0.034 Sum_probs=123.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|++++|+|+||||||||+++|+|++++..| .+....... .......++|+||++.+|+. ++.+
T Consensus 40 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~-----tv~~ 113 (257)
T cd03288 40 VKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDG-KIVIDGIDISKLPLHTLRSRLSIILQDPILFSG-----SIRF 113 (257)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCC-eEEECCEEhhhCCHHHHhhhEEEECCCCccccc-----HHHH
Confidence 3345569999999999999999999999999999888 554322111 11113458999999766542 4445
Q ss_pred HHHHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
+...... .....+...+.. +....++-....+....+++...+.+++.+|++++||||++++|+.
T Consensus 114 nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 190 (257)
T cd03288 114 NLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMA 190 (257)
T ss_pred hcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 4432111 011111111110 1111111111112223445566677899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+++.+.+.+.++.+ ..++++++|+++.+.. +++++.+.+|.++..+++.++..
T Consensus 191 ~~~~l~~~l~~~~~---------~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 191 TENILQKVVMTAFA---------DRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred HHHHHHHHHHHhcC---------CCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence 98888888876421 2488999999998875 99999999999887776655543
No 307
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.64 E-value=7.1e-17 Score=172.81 Aligned_cols=196 Identities=10% Similarity=0.096 Sum_probs=134.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc--------cccCCeeEEecChHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA--------MEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~--------~~~~~i~yvfq~~~lf~~~ 193 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+.....+... .....++|+||++.+|+..
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 101 (648)
T PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSG-TYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHL 101 (648)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCC
Confidence 33334455669999999999999999999999999999888 55443222110 1134689999998777654
Q ss_pred HhhhhhHHHHHHhccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 194 IKDGKFLEFASVHGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.|++.+.....+....... +.++. +....++..+..+....+++...+.+|+.+|++++||||++++|+
T Consensus 102 ----tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~ 177 (648)
T PRK10535 102 ----TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDS 177 (648)
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 566666543322232222222 22221 111111222222223345566677799999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
.+++.+.+.++++.++ ..++++++|+++.+ ..+++++.+.+|+++..+++.+..
T Consensus 178 ~s~~~l~~ll~~l~~~--------g~tilivsH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 178 HSGEEVMAILHQLRDR--------GHTVIIVTHDPQVA-AQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHHHHHHHHhc--------CCEEEEECCCHHHH-HhCCEEEEEECCEEEeecCccccc
Confidence 9999999999876531 23889999999876 469999999999999888777664
No 308
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.63 E-value=6.1e-17 Score=171.03 Aligned_cols=187 Identities=18% Similarity=0.173 Sum_probs=137.4
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
...+|+.++++|||||||||+++.|.+++.+..| .+.....+. ....++.++|++|++.+|.. ++.+|+.
T Consensus 351 ~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G-~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~-----TI~~NI~ 424 (567)
T COG1132 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSG-EILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-----TIRENIA 424 (567)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-eEEECCEehhhcCHHHHHHhccEEcccceeecc-----cHHHHHh
Confidence 3569999999999999999999999999999888 554322111 12223458999999887762 8889988
Q ss_pred HhccccCCcHHHHHHHHHcC------------CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 205 VHGNLYGTSVEAVEAVADAG------------KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g------------~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
+.... .+.+++.++++.. ....+.-.-..+...++|+...+.+++.+|++++|||+|+++|..++.
T Consensus 425 ~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~ 502 (567)
T COG1132 425 LGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEA 502 (567)
T ss_pred cCCCC--CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHH
Confidence 76432 3445555544332 111111001112334677778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
.+++.+..+.+ + -|.+++.|.+... ..+|+++++++|+++..|++++++..
T Consensus 503 ~I~~~l~~l~~--------~-rT~iiIaHRlsti-~~aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 503 LIQDALKKLLK--------G-RTTLIIAHRLSTI-KNADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred HHHHHHHHHhc--------C-CEEEEEeccHhHH-HhCCEEEEEECCEEEEecCHHHHHHc
Confidence 99999986431 1 1788899999555 45999999999999999999888765
No 309
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.63 E-value=4.3e-17 Score=172.92 Aligned_cols=188 Identities=18% Similarity=0.218 Sum_probs=133.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|+.++|+|+||||||||++.|+|+++|..| .+.....+.. ...++.++|++|++.+|.. ++.+
T Consensus 354 inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-----Ti~~ 427 (588)
T PRK13657 354 VSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG-RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-----SIED 427 (588)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCEEhhhCCHHHHHhheEEEecCcccccc-----cHHH
Confidence 3344569999999999999999999999999999988 6654332211 1223468999999887753 7888
Q ss_pred HHHHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
|+.+... ..+.+++..+++. |....+.-.-..+...++|+...+.+++.+|++++||||++++|+.
T Consensus 428 Ni~~~~~--~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~ 505 (588)
T PRK13657 428 NIRVGRP--DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVE 505 (588)
T ss_pred HHhcCCC--CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 8877532 1234444433322 1111111000112223566677778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+++.+.+.+..... ..|+++++|+++. .+.+|+++.+.+|.+...++..++.
T Consensus 506 t~~~i~~~l~~~~~---------~~tvIiitHr~~~-~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 506 TEAKVKAALDELMK---------GRTTFIIAHRLST-VRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHHHHHHHHHHHhc---------CCEEEEEEecHHH-HHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999998876431 2389999999865 5679999999999999888877665
No 310
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.63 E-value=8.7e-17 Score=167.03 Aligned_cols=188 Identities=11% Similarity=0.064 Sum_probs=122.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChH---HHHHH-HhhhhhH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERS---VMEKA-IKDGKFL 200 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~---lf~~~-~~~~~~~ 200 (399)
..+|++++|+||||||||||+++|+|+.+|..| .+....... ......+++|+||++. +|+.+ .....+.
T Consensus 271 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 349 (491)
T PRK10982 271 LHKGEILGIAGLVGAKRTDIVETLFGIREKSAG-TITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLI 349 (491)
T ss_pred EeCCcEEEEecCCCCCHHHHHHHHcCCCcCCcc-EEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheeh
Confidence 459999999999999999999999999999888 555422111 1111345889998753 34322 0001122
Q ss_pred HHHHHhccccCC-cH----HHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 201 EFASVHGNLYGT-SV----EAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 201 E~~~~~~~~~g~-~~----~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+++.+....++. .. +.+...++. +.. ...+..+..+....++++..+.+++.+|++++||||++++|+.+++.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~ 429 (491)
T PRK10982 350 SNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE 429 (491)
T ss_pred hhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHH
Confidence 323222111221 11 122222222 110 01122222233345666677779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQT 326 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~ 326 (399)
+.+.+..+.++ ..++|+++||++++...+++++.+.+|.++...+
T Consensus 430 ~~~~l~~l~~~--------~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 430 IYQLIAELAKK--------DKGIIIISSEMPELLGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred HHHHHHHHHHC--------CCEEEEECCChHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999886532 2389999999999999999999999998875443
No 311
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=5.8e-17 Score=169.89 Aligned_cols=177 Identities=14% Similarity=0.117 Sum_probs=121.9
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChH--HHHHHHhhhhhHHHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERS--VMEKAIKDGKFLEFASV 205 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~--lf~~~~~~~~~~E~~~~ 205 (399)
....+|++++|+||||||||||+++|+|+++|..| .+....+ ..++|++|++. +++.+ ++.+++.+
T Consensus 340 ~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G-~i~~~~~-------~~i~~~~q~~~~~~~~~~----t~~~~~~~ 407 (530)
T PRK15064 340 LLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG-TVKWSEN-------ANIGYYAQDHAYDFENDL----TLFDWMSQ 407 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCc-------eEEEEEcccccccCCCCC----cHHHHHHH
Confidence 44569999999999999999999999999999888 5543221 24899999863 22222 55555443
Q ss_pred hccccCCcHHHHHHHHHcC-Cc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEAVADAG-KR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~g-~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
... .......+...++.. .. ...+..+..+....++++..+.+++.+|++++||||++++|+.+.+.+.+.++++
T Consensus 408 ~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-- 484 (530)
T PRK15064 408 WRQ-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-- 484 (530)
T ss_pred hcc-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--
Confidence 211 111223333333331 10 1112222223334556667777999999999999999999999988888887753
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee-ecCCCc
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT-NHQTSP 328 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~-~~~~~~ 328 (399)
+ .++|+++||++.+...+++++.+.+|.++ ..+++.
T Consensus 485 --------~-~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~ 521 (530)
T PRK15064 485 --------E-GTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYE 521 (530)
T ss_pred --------C-CEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHH
Confidence 1 28899999999999999999999988876 445443
No 312
>PRK13409 putative ATPase RIL; Provisional
Probab=99.63 E-value=5.2e-17 Score=171.61 Aligned_cols=175 Identities=14% Similarity=0.088 Sum_probs=122.1
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
...+|++++|+||||||||||+++|+|+++|..| .+... ..++|++|+...+..+ ++.+++.+...
T Consensus 361 ~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G-~I~~~---------~~i~y~~Q~~~~~~~~----tv~e~l~~~~~ 426 (590)
T PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEG-EVDPE---------LKISYKPQYIKPDYDG----TVEDLLRSITD 426 (590)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEEe---------eeEEEecccccCCCCC----cHHHHHHHHhh
Confidence 3468999999999999999999999999999888 55432 1389999986554333 67777655322
Q ss_pred ccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015825 209 LYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287 (399)
Q Consensus 209 ~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~ 287 (399)
.++. ...+.+.++. +.....+-.+..+....+|++..+.+++.+|++++||||++++|..++..+.+.|+++.++.
T Consensus 427 ~~~~-~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~-- 503 (590)
T PRK13409 427 DLGS-SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEER-- 503 (590)
T ss_pred hcCh-HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC--
Confidence 2221 1122223322 11111122222233334566677779999999999999999999999999999999876432
Q ss_pred ccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCC
Q 015825 288 GKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQT 326 (399)
Q Consensus 288 ~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~ 326 (399)
..++++++||++++...+++++.+.+ .+...+.
T Consensus 504 -----g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 504 -----EATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred -----CCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 23889999999999999999888875 4443333
No 313
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.62 E-value=5.8e-17 Score=166.38 Aligned_cols=184 Identities=16% Similarity=0.092 Sum_probs=121.6
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
.++...+|++++|+||||||||||+++|+|+.+|..| .+....... ++.....+++.+ ++.+++.+
T Consensus 43 VSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sG-eI~I~G~~~---------~i~~~~~l~~~l----TV~EnL~l 108 (549)
T PRK13545 43 ISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG-TVDIKGSAA---------LIAISSGLNGQL----TGIENIEL 108 (549)
T ss_pred eEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCce-EEEECCEee---------eEEeccccCCCC----cHHHHHHh
Confidence 3345569999999999999999999999999999888 554322110 111111122222 55666554
Q ss_pred hccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 206 ~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
....++.......+ .++. +....++-.+..+....++++..+.+++.+|++++||||++++|+.++..+.+.|.+
T Consensus 109 ~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~e 188 (549)
T PRK13545 109 KGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNE 188 (549)
T ss_pred hhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 33223333332222 2211 111111111122222345666677799999999999999999999999999998887
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+.++ ..++++++|+++++...+++++.+.+|.+...+++.++.
T Consensus 189 l~~~--------G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~ 231 (549)
T PRK13545 189 FKEQ--------GKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVV 231 (549)
T ss_pred HHhC--------CCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 6421 348899999999999999999999999988777765554
No 314
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.62 E-value=5.6e-17 Score=144.71 Aligned_cols=144 Identities=19% Similarity=0.186 Sum_probs=104.2
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
..+....+|++++|+||||||||||+++|+|++++..| .+....+ ..++|++|++.++ . .++.+++.
T Consensus 19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~~~-------~~i~~~~q~~~~~-~----~tv~~nl~ 85 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG-RIGMPEG-------EDLLFLPQRPYLP-L----GTLREQLI 85 (166)
T ss_pred cCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCC-------ceEEEECCCCccc-c----ccHHHHhh
Confidence 34455679999999999999999999999999999888 5544221 3489999987543 2 26777765
Q ss_pred HhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 015825 205 VHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~ 284 (399)
+. .. ..+....+++...+.+++.+|++++||||++++|+.+.+.+.+.+.++
T Consensus 86 ~~-~~------------------------~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--- 137 (166)
T cd03223 86 YP-WD------------------------DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--- 137 (166)
T ss_pred cc-CC------------------------CCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---
Confidence 42 00 011112233444455788899999999999999999998888888763
Q ss_pred HHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 285 IKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
..++++++|+.+.. ..+++++.+.+
T Consensus 138 --------~~tiiivsh~~~~~-~~~d~i~~l~~ 162 (166)
T cd03223 138 --------GITVISVGHRPSLW-KFHDRVLDLDG 162 (166)
T ss_pred --------CCEEEEEeCChhHH-hhCCEEEEEcC
Confidence 13889999998654 57777776654
No 315
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.62 E-value=8.8e-17 Score=173.65 Aligned_cols=189 Identities=16% Similarity=0.163 Sum_probs=136.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+|+||||||||+++|+|+++|..| .+.....+.. ...++.++|++|++.+|.. ++.||+
T Consensus 478 l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G-~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-----ti~eNi 551 (694)
T TIGR01846 478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHG-QVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-----SIRDNI 551 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEehhhCCHHHHHHhCeEEccCCeehhh-----hHHHHH
Confidence 44568999999999999999999999999999989 6654332221 1223458999999877753 788888
Q ss_pred HHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+... ..+.+++.++++. |....++-....+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 552 ~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~ 629 (694)
T TIGR01846 552 ALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESE 629 (694)
T ss_pred hcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHH
Confidence 76432 1234444433322 222222211112233456667777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.+.+.+.++. ...|+++++|+++.. ..+++++.+.+|+++..|+..++....
T Consensus 630 ~~i~~~l~~~~---------~~~t~i~itH~~~~~-~~~d~ii~l~~G~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 630 ALIMRNMREIC---------RGRTVIIIAHRLSTV-RACDRIIVLEKGQIAESGRHEELLALQ 682 (694)
T ss_pred HHHHHHHHHHh---------CCCEEEEEeCChHHH-HhCCEEEEEeCCEEEEeCCHHHHHHcC
Confidence 99999998742 134899999999765 569999999999999988877766543
No 316
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.61 E-value=6.1e-17 Score=175.20 Aligned_cols=187 Identities=18% Similarity=0.121 Sum_probs=132.2
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+....+|+.++|+||||||||||++.|.|+++|..| .+.....+.. ...++.++|++|++.+|.. ++.||
T Consensus 501 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G-~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-----TIreN 574 (711)
T TIGR00958 501 TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG-QVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-----SVREN 574 (711)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-EEEECCEEHHhcCHHHHHhhceEEecCcccccc-----CHHHH
Confidence 344569999999999999999999999999999999 6654333221 1223458999999877753 88899
Q ss_pred HHHhccccCCcHHHHHHHHHc-CCceEE-------e--cch--hhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 203 ASVHGNLYGTSVEAVEAVADA-GKRCIL-------D--IDV--QGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~-g~~~vl-------d--ld~--~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+.+.... .+.+++.++++. +...++ | +.. ......++|+...+.+++.+|++++||||++++|.++
T Consensus 575 I~~g~~~--~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 575 IAYGLTD--TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred HhcCCCC--CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence 8875322 234455444432 111111 1 000 1122335667777789999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
++.+++ ... . ...|+++++|+++. ...+|+++.+++|+++..|++.++...
T Consensus 653 e~~i~~-~~~----~------~~~TvIiItHrl~~-i~~aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 653 EQLLQE-SRS----R------ASRTVLLIAHRLST-VERADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred HHHHHH-hhc----c------CCCeEEEEeccHHH-HHhCCEEEEEECCEEEEeeCHHHHHhC
Confidence 877776 111 1 13489999999965 567999999999999999988777654
No 317
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.61 E-value=5.6e-17 Score=146.13 Aligned_cols=131 Identities=14% Similarity=0.066 Sum_probs=97.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
....+|++++|+||||||||||+++|+|++++..| .+..... .++|++|...
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~--------~i~~~~q~~~------------------- 71 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD-NDEWDGI--------TPVYKPQYID------------------- 71 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCc-EEEECCE--------EEEEEcccCC-------------------
Confidence 34568999999999999999999999999999888 5543221 2677776532
Q ss_pred cccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015825 208 NLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~ 287 (399)
.+. ..+++...+.+++.+|++.+||||++++|+.+++.+.+.+.++.++
T Consensus 72 ----LSg------------------------Gq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~--- 120 (177)
T cd03222 72 ----LSG------------------------GELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEE--- 120 (177)
T ss_pred ----CCH------------------------HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHc---
Confidence 010 1112222334778889999999999999999999999988876432
Q ss_pred ccCCCcceEEEeCCCHHHHHHHHHHhhcccCCee
Q 015825 288 GKSSGIFDHILYNDKLEECYENLKKHLGLDGSIA 321 (399)
Q Consensus 288 ~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~ 321 (399)
...++++++|+++.+...+++++.+.++..
T Consensus 121 ----~~~tiiivsH~~~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 121 ----GKKTALVVEHDLAVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred ----CCCEEEEEECCHHHHHHhCCEEEEEcCCCc
Confidence 123889999999999888899888876533
No 318
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.61 E-value=7.8e-17 Score=170.28 Aligned_cols=189 Identities=15% Similarity=0.111 Sum_probs=133.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+||||||||||+++|+|+++|..| .+.....+.. ...+..++|++|++.+|.. ++.+|+
T Consensus 336 ~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-----ti~~Ni 409 (569)
T PRK10789 336 FTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEG-DIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-----TVANNI 409 (569)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-EEEECCEEHhhCCHHHHHhheEEEccCCeeccc-----cHHHHH
Confidence 34569999999999999999999999999999999 5544322211 1123458999999877642 778888
Q ss_pred HHhccccCCcHHHHHHHHHc-CC-----------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GK-----------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~-----------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... .+.+.+..+++. +. ...++-....+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 410 ~~~~~~--~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~ 487 (569)
T PRK10789 410 ALGRPD--ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTE 487 (569)
T ss_pred hcCCCC--CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHH
Confidence 764321 233444433322 11 1111111111222345666777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.+.+.+..+.. ..|+++++|+++. ...+++++.+.+|.++..++.+++....
T Consensus 488 ~~i~~~l~~~~~---------~~tii~itH~~~~-~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 488 HQILHNLRQWGE---------GRTVIISAHRLSA-LTEASEILVMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred HHHHHHHHHHhC---------CCEEEEEecchhH-HHcCCEEEEEeCCEEEEecCHHHHHHcC
Confidence 999999887431 2389999999865 4679999999999999988877776443
No 319
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.61 E-value=1.1e-16 Score=148.86 Aligned_cols=175 Identities=14% Similarity=0.165 Sum_probs=112.6
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--------ccccCCeeEEecChHHHHHHHhhhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--------AMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--------~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+....+|++++|+||||||||||+++|+|+.++..| .+........ ...+.+++|+||++.+|+ . +
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~----t 94 (218)
T cd03290 21 NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEG-KVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLN-A----T 94 (218)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-eEEECCcccccccccccchhhcceEEEEcCCCcccc-c----c
Confidence 344568999999999999999999999999999888 5554322111 112346899999976653 2 6
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHc-CCceEE-----------ecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADA-GKRCIL-----------DIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vl-----------dld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
+.+++.+... + ......+..+. +....+ +..+..+....++++..+.+++.+|++++||||++++
T Consensus 95 ~~~nl~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~L 171 (218)
T cd03290 95 VEENITFGSP-F--NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSAL 171 (218)
T ss_pred HHHHHhhcCc-C--CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccc
Confidence 6777665321 1 11212222111 110000 0111122223455566677999999999999999999
Q ss_pred CCCcHHHHHH--HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 267 GTETEDQILK--RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 267 D~~~~e~i~~--~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
|+.+++.+.+ .++.+.+ ...++++++|+.+.+ ..+++++.+.+|
T Consensus 172 D~~~~~~l~~~~ll~~~~~--------~~~tii~~sH~~~~~-~~~d~i~~l~~G 217 (218)
T cd03290 172 DIHLSDHLMQEGILKFLQD--------DKRTLVLVTHKLQYL-PHADWIIAMKDG 217 (218)
T ss_pred CHHHHHHHHHHHHHHHHhc--------CCCEEEEEeCChHHH-hhCCEEEEecCC
Confidence 9998888877 3443321 124889999999876 468887776654
No 320
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=1.7e-16 Score=143.68 Aligned_cols=195 Identities=15% Similarity=0.156 Sum_probs=131.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee---cCCCccccccCCeeEEecChHH--HHHHHhhhhhHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH---TTRAPRAMEKDGVHYHFTERSV--MEKAIKDGKFLEF 202 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~---ttr~~~~~~~~~i~yvfq~~~l--f~~~~~~~~~~E~ 202 (399)
.+..+|+++.++|.||||||||+|.|+|.+.+..|+.... .|+.+......-++-|||++.. ++.+ ++.||
T Consensus 27 L~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l----TieEN 102 (263)
T COG1101 27 LEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL----TIEEN 102 (263)
T ss_pred eeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc----cHHHH
Confidence 3456899999999999999999999999999999943321 3444333322335667999753 5666 77888
Q ss_pred HHHhc---cccCCcH-------HHHHHHHHc---CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 203 ASVHG---NLYGTSV-------EAVEAVADA---GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 203 ~~~~~---~~~g~~~-------~~i~~~~~~---g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
..... ..+|... +..+..++. |+.-.++-...-+...++|....+.+.+.+|++++|||.++++||.
T Consensus 103 l~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPk 182 (263)
T COG1101 103 LALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPK 182 (263)
T ss_pred HHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcc
Confidence 76542 2233222 111111111 1111111111111112445555666888999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.+.+.-.+.-++ ...|.++|||+++.|+..-.|.|.+..|.++..-.-++-..+
T Consensus 183 ta~~vm~lT~kiV~~-------~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~~k~~L 239 (263)
T COG1101 183 TAEFVMELTAKIVEE-------HKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEEKASL 239 (263)
T ss_pred hHHHHHHHHHHHHHh-------cCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccccccCC
Confidence 999988888776554 345999999999999999999999999999876554444443
No 321
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.61 E-value=1.3e-16 Score=167.72 Aligned_cols=186 Identities=16% Similarity=0.157 Sum_probs=129.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++++||||||||||+++|+|+++|..| .+.....+. ....++.++|++|++.+|+. ++.+|+
T Consensus 339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-----ti~~Ni 412 (544)
T TIGR01842 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG-SVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-----TVAENI 412 (544)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEehhhCCHHHHhhheEEecCCcccccc-----cHHHHH
Confidence 44569999999999999999999999999999988 554322111 11223468999999877642 677887
Q ss_pred HHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+... ..+.+++.+.++. +....++-....+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 413 ~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~ 490 (544)
T TIGR01842 413 ARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGE 490 (544)
T ss_pred hccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHH
Confidence 65432 1233333332221 111111111111223355666777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
+.+.+.+.++.. ...++++++|+++. ...+++++.+.+|.++..++++++
T Consensus 491 ~~i~~~l~~~~~--------~~~tvi~ith~~~~-~~~~d~i~~l~~G~i~~~g~~~~l 540 (544)
T TIGR01842 491 QALANAIKALKA--------RGITVVVITHRPSL-LGCVDKILVLQDGRIARFGERDEV 540 (544)
T ss_pred HHHHHHHHHHhh--------CCCEEEEEeCCHHH-HHhCCEEEEEECCEEEeeCCHHHH
Confidence 999998887531 12388999999974 567999999999999888775544
No 322
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.9e-16 Score=166.07 Aligned_cols=187 Identities=12% Similarity=-0.008 Sum_probs=121.5
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
.+....++...+|++++|+||||||||||+++|+|++++..| .+....+ ..++|+||++.+++.+ ++.
T Consensus 15 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G-~i~~~~~-------~~i~~~~q~~~~~~~~----tv~ 82 (530)
T PRK15064 15 PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAG-NVSLDPN-------ERLGKLRQDQFAFEEF----TVL 82 (530)
T ss_pred EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEecCC-------CEEEEEeccCCcCCCC----cHH
Confidence 344444455679999999999999999999999999999888 5543221 2378999986554332 333
Q ss_pred HHHHHhc-----------------------------------cccCCc-HHHHHHHHHc-CCce-EEecchhhHHHHHcC
Q 015825 201 EFASVHG-----------------------------------NLYGTS-VEAVEAVADA-GKRC-ILDIDVQGARSVRAS 242 (399)
Q Consensus 201 E~~~~~~-----------------------------------~~~g~~-~~~i~~~~~~-g~~~-vldld~~g~~~l~~~ 242 (399)
+++.+.. ..++.. ...+.+.++. +... ..+..+..+....++
T Consensus 83 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~q 162 (530)
T PRK15064 83 DTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKL 162 (530)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHH
Confidence 3332210 000100 1112222221 1100 000011122223456
Q ss_pred CcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 243 PLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 243 ~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
++..+.+++.+|++++||||++++|+.+.+.+.+.|.+ . ..++|+++||++.+...+++++.+.+|.++
T Consensus 163 rv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~-------~~tiiivsHd~~~~~~~~d~i~~l~~g~i~ 231 (530)
T PRK15064 163 RVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----R-------NSTMIIISHDRHFLNSVCTHMADLDYGELR 231 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----C-------CCeEEEEeCCHHHHHhhcceEEEEeCCEEE
Confidence 66777799999999999999999999999888888753 1 238899999999999999999999999884
Q ss_pred -ecCCCccc
Q 015825 323 -NHQTSPKG 330 (399)
Q Consensus 323 -~~~~~~~~ 330 (399)
..+.+.+.
T Consensus 232 ~~~g~~~~~ 240 (530)
T PRK15064 232 VYPGNYDEY 240 (530)
T ss_pred EecCCHHHH
Confidence 45554433
No 323
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.60 E-value=2e-16 Score=166.58 Aligned_cols=185 Identities=14% Similarity=0.026 Sum_probs=122.9
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
.+..+.+....+|++++|+||||||||||+++|+|+.+|..| .+.... ...++|+||++.+++.+ ++.
T Consensus 19 ~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G-~i~~~~-------~~~i~~v~Q~~~~~~~~----tv~ 86 (552)
T TIGR03719 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNG-EARPAP-------GIKVGYLPQEPQLDPTK----TVR 86 (552)
T ss_pred eeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEecC-------CCEEEEEeccCCCCCCC----cHH
Confidence 344444556679999999999999999999999999999888 554321 12489999987665544 555
Q ss_pred HHHHHhccc--------------cCCcHH----------HH----------------HHHHHcCCceEEecchhhHHHHH
Q 015825 201 EFASVHGNL--------------YGTSVE----------AV----------------EAVADAGKRCILDIDVQGARSVR 240 (399)
Q Consensus 201 E~~~~~~~~--------------~g~~~~----------~i----------------~~~~~~g~~~vldld~~g~~~l~ 240 (399)
+++.+.... +..... .+ .+.+........+..+..+....
T Consensus 87 e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGq 166 (552)
T TIGR03719 87 ENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGE 166 (552)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHH
Confidence 555432100 011000 01 11111100000111122222334
Q ss_pred cCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 241 ASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 241 ~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
++++..+.+++.+|++++||||++++|+.+.+.+.+.|.++. .++|+++|+++.+...+++++.+.+|.
T Consensus 167 kqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~-----------~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 167 RRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP-----------GTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC-----------CeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 556667779999999999999999999999988888776521 288999999999999899999999988
Q ss_pred ee-ecCCCc
Q 015825 321 AT-NHQTSP 328 (399)
Q Consensus 321 ~~-~~~~~~ 328 (399)
++ ..+...
T Consensus 236 i~~~~g~~~ 244 (552)
T TIGR03719 236 GIPWEGNYS 244 (552)
T ss_pred EEEecCCHH
Confidence 65 445444
No 324
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.60 E-value=9.2e-16 Score=149.90 Aligned_cols=202 Identities=16% Similarity=0.129 Sum_probs=142.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecC--------CCccccccCCeeEEecChH--HHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTT--------RAPRAMEKDGVHYHFTERS--VMEK 192 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~tt--------r~~~~~~~~~i~yvfq~~~--lf~~ 192 (399)
+...+|++++++|.||||||-+.+.++++++. -.| .+.+.. +..+...-+.++++||++- +-|-
T Consensus 31 f~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg-~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl 109 (534)
T COG4172 31 FDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSG-SILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPL 109 (534)
T ss_pred eeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccc-eeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcH
Confidence 44569999999999999999999999999875 122 222211 1112222346899999863 2222
Q ss_pred HHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCce--------EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRC--------ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~--------vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
.....++.|.+.++ ++....+.++.+-+.+.. .++-.|..+...++|+...+.+++++|++++.|||+.
T Consensus 110 ~tIg~Qi~E~l~~H---rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTT 186 (534)
T COG4172 110 HTIGKQLAEVLRLH---RGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTT 186 (534)
T ss_pred hHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcc
Confidence 21222555655554 444555444433221111 1111122222234666677789999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
++|..-+.+|.+.|+.++++++. .++++|||+.-+-+.++++++|.+|.++..++.+.++..|......
T Consensus 187 ALDVtvQaQIL~Ll~~Lq~~~gM-------a~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr 255 (534)
T COG4172 187 ALDVTVQAQILDLLKELQAELGM-------AILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTR 255 (534)
T ss_pred hhhhhhHHHHHHHHHHHHHHhCc-------EEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChHHH
Confidence 99999999999999999988766 7899999999999999999999999999999999999888766544
No 325
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.60 E-value=9.4e-17 Score=170.15 Aligned_cols=188 Identities=16% Similarity=0.166 Sum_probs=132.4
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+||||||||||+++|+|.++|..| .+.....+.. ...++.++|++|++.+|. +++.||+
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-----~ti~~Ni 429 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG-QILIDGIDINTVTRESLRKSIATVFQDAGLFN-----RSIRENI 429 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCC-EEEECCEEhhhCCHHHHHhheEEEccCCccCc-----ccHHHHH
Confidence 34468999999999999999999999999999888 5554322211 122345899999987664 3788888
Q ss_pred HHhccccCCcHHHHHHHHHc-CC-----------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GK-----------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~-----------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... .+.+++.++++. +. ...++-....+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 430 ~~~~~~--~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~ 507 (585)
T TIGR01192 430 RLGREG--ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETE 507 (585)
T ss_pred hcCCCC--CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 775321 233444333221 11 1111101111222345666777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.+.+.++.. ..++++++|+++.. ..+++++.+.+|.++..++..++...
T Consensus 508 ~~i~~~l~~~~~---------~~tvI~isH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 508 ARVKNAIDALRK---------NRTTFIIAHRLSTV-RNADLVLFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred HHHHHHHHHHhC---------CCEEEEEEcChHHH-HcCCEEEEEECCEEEEECCHHHHHHC
Confidence 999999876431 23889999999776 56999999999999888877666543
No 326
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.60 E-value=1.4e-16 Score=168.42 Aligned_cols=186 Identities=17% Similarity=0.143 Sum_probs=131.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++++||||||||||++.|+|+++|..| .+.....+. ....++.++|++|++.+|.. ++.+|+
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G-~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-----Ti~~Ni 434 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSG-RILLDGVDLRQLDPAELRARMALVPQDPVLFAA-----SVMENI 434 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-EEEECCEEHHhcCHHHHHHhceEEccCCccccc-----cHHHHH
Confidence 44569999999999999999999999999999888 554432221 11123458999999877643 788888
Q ss_pred HHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... .+.+++.+.++. |....+.-........++|+...+.+++.+|+++++|||++++|+.++
T Consensus 435 ~~~~~~--~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~ 512 (576)
T TIGR02204 435 RYGRPD--ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESE 512 (576)
T ss_pred hcCCCC--CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHH
Confidence 764321 123444333332 111111111111223356667777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+.+.+.+..+.+ ..++|+++|+++. ...+++++.+.+|.++..+++.++.
T Consensus 513 ~~i~~~l~~~~~---------~~t~IiitH~~~~-~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 513 QLVQQALETLMK---------GRTTLIIAHRLAT-VLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHHHHHHhC---------CCEEEEEecchHH-HHhCCEEEEEECCEEEeeecHHHHH
Confidence 999998887531 2389999999855 5679999999999999888766554
No 327
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.60 E-value=1e-16 Score=169.32 Aligned_cols=188 Identities=13% Similarity=0.111 Sum_probs=134.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+|+||||||||++.|+|+++|..| .+.....+.. ...++.++|++|++.+|.. ++.+|+
T Consensus 353 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G-~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-----Ti~~Ni 426 (571)
T TIGR02203 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSG-QILLDGHDLADYTLASLRRQVALVSQDVVLFND-----TIANNI 426 (571)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-eEEECCEeHHhcCHHHHHhhceEEccCcccccc-----cHHHHH
Confidence 34468999999999999999999999999999888 6654332211 1223458999999877753 788888
Q ss_pred HHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+... ...+.+++.++++. |....+.-.-..+...++|+...+.+++.+|++++||||++++|..++
T Consensus 427 ~~~~~-~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~ 505 (571)
T TIGR02203 427 AYGRT-EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE 505 (571)
T ss_pred hcCCC-CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 76531 02334444443332 111111111111233456777777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+.+.|.+... ..++|+++|+.. ....+|+++.+.+|++...++..+++.
T Consensus 506 ~~i~~~L~~~~~---------~~tiIiitH~~~-~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 506 RLVQAALERLMQ---------GRTTLVIAHRLS-TIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHHHHHHHHHhC---------CCEEEEEehhhH-HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 999988886431 248999999984 467799999999999988888777653
No 328
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.6e-16 Score=160.46 Aligned_cols=186 Identities=18% Similarity=0.176 Sum_probs=132.5
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
++..+|+-++|+|+|||||||++|+|.+.+. ..| .|....... ....++-+||+||+..+|.. ++++|+
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG-~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-----TIl~NI 445 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSG-SILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-----TILYNI 445 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCC-cEEECCeeHhhhChHHhhhheeEeCCcccccch-----hHHHHh
Confidence 4456999999999999999999999999988 677 554332221 11223458999999988865 788888
Q ss_pred HHhccccCCcHHHHHHHHH-cCCceEEecchhhHHH-----------HHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVAD-AGKRCILDIDVQGARS-----------VRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~-~g~~~vldld~~g~~~-----------l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.|+. .+- +.+++.++.+ .+....+.--|.|... ..+|+...+.+++.+|++.++||+|+++|.+++
T Consensus 446 ~YGn-~sa-s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE 523 (591)
T KOG0057|consen 446 KYGN-PSA-SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETE 523 (591)
T ss_pred hcCC-CCc-CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhH
Confidence 7753 222 3333433333 2332211111222211 135666777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
.++.+.+.... +.-|.|++-|+++.+ ..+|+++.+++|++...|+..+++.
T Consensus 524 ~~i~~~i~~~~---------~~rTvI~IvH~l~ll-~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 524 REILDMIMDVM---------SGRTVIMIVHRLDLL-KDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHHHHHHhc---------CCCeEEEEEecchhH-hcCCEEEEEECCeeEEeccHHHHhh
Confidence 99988887721 122889999998655 5799999999999999999888877
No 329
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.59 E-value=1.4e-16 Score=136.64 Aligned_cols=177 Identities=14% Similarity=0.161 Sum_probs=115.7
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccc--eeeecC-C-CccccccCCeeEEecChHHHHHHHh
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF--SVSHTT-R-APRAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~--~i~~tt-r-~~~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
..+....+...-+|+++.++||||||||||+..+.|.+.+.+.. .+.... + ..-+..++.+|+.||+.-+|+++
T Consensus 15 ~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl-- 92 (213)
T COG4136 15 SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL-- 92 (213)
T ss_pred ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc--
Confidence 34444444455699999999999999999999999998774421 333211 1 11122234589999999999998
Q ss_pred hhhhHHHHHHh--ccccCCcH-HHHHHHHH-cCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 196 DGKFLEFASVH--GNLYGTSV-EAVEAVAD-AGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 196 ~~~~~E~~~~~--~~~~g~~~-~~i~~~~~-~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
++.+|+.|. ....|..+ ..+..+++ .++.-.++-+|......++.+.....+++..|..++||||++.+|..-+
T Consensus 93 --sVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR 170 (213)
T COG4136 93 --SVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALR 170 (213)
T ss_pred --ccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHH
Confidence 777776553 22333221 11122222 2455556667766665566666677789999999999999999997777
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHH
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECY 307 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~ 307 (399)
.++++++=.-... .....|.||||.+.+-
T Consensus 171 ~qfR~wVFs~~r~-------agiPtv~VTHD~~Dvp 199 (213)
T COG4136 171 DQFRQWVFSEVRA-------AGIPTVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHHHHHHHh-------cCCCeEEEecccccCC
Confidence 7776665432211 2347889999876553
No 330
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.59 E-value=4.5e-16 Score=138.96 Aligned_cols=199 Identities=15% Similarity=0.116 Sum_probs=139.7
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec----CCCc-cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT----TRAP-RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t----tr~~-~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
...+|+.-+++||||+||||++..|.|.-+|..|....+. ++.+ ....+.|+|--||.+..|+.+ ++.||+
T Consensus 27 ~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~l----tV~eNL 102 (249)
T COG4674 27 SVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENL----TVRENL 102 (249)
T ss_pred EecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhc----cHHHHH
Confidence 3468999999999999999999999999999988444432 1211 222345788999999999988 888888
Q ss_pred HHhccc------------cCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 204 SVHGNL------------YGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 204 ~~~~~~------------~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+...+. .......+.+.+.- ++...-+.....+...++|.+..-..++.+|.++++|||.++.-...
T Consensus 103 elA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~E 182 (249)
T COG4674 103 ELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAE 182 (249)
T ss_pred HHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHH
Confidence 765332 11112223222211 11100001011112224667777789999999999999999997666
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
.+..-+.++.+.. .+.++++.||+.-+-..++++-++..|.+-..|+..++.+.|.+-+++
T Consensus 183 t~~taeLl~~la~---------~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp~ViEvY 243 (249)
T COG4674 183 TEKTAELLKSLAG---------KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPKVIEVY 243 (249)
T ss_pred HHHHHHHHHHHhc---------CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCcceEeee
Confidence 6667677776542 457889999999999999999999999999999988888877655443
No 331
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.59 E-value=6e-16 Score=160.69 Aligned_cols=189 Identities=14% Similarity=0.079 Sum_probs=121.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-cccceeeecCCCc-----cccccCCeeEEecChHHHHHHHhhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-MFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
.+....+|++++|+||||||||||+++|+|..++ ..| .+....+.. .......++|++|++.++..... ++
T Consensus 279 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~--~~ 355 (490)
T PRK10938 279 LSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSN-DLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVST--SV 355 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCC-eEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCC--cH
Confidence 3344569999999999999999999999998765 467 554422211 11123458999997654332100 23
Q ss_pred HHHHHHh--c--cccC-CcH---HHHHHHHHc-CCce-EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 200 LEFASVH--G--NLYG-TSV---EAVEAVADA-GKRC-ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 200 ~E~~~~~--~--~~~g-~~~---~~i~~~~~~-g~~~-vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
.++..+. . ..+. ... ..+.+.++. +... ..+-.+..+....++++..+.+++.+|++++||||++++|+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~ 435 (490)
T PRK10938 356 RNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPL 435 (490)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 3332211 1 1111 111 223333332 1211 222222333334566777778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHH-HHHHhhcccCCeeeec
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYE-NLKKHLGLDGSIATNH 324 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~-~l~~ii~~~~~~~~~~ 324 (399)
+.+.+.+.|.++.++ +..++++++||++++.. .+++++.+.+|.++..
T Consensus 436 ~~~~l~~~L~~l~~~-------~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 436 NRQLVRRFVDVLISE-------GETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHHHhc-------CCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 999999999987542 12368899999999987 4788888888876643
No 332
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.59 E-value=1.9e-16 Score=168.68 Aligned_cols=196 Identities=15% Similarity=0.109 Sum_probs=136.6
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc---ccceeeecCCCcc-ccccCCeeEEecChHHHHHHHhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM---FGFSVSHTTRAPR-AMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~---~g~~i~~ttr~~~-~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
+..+.+....+|+.++|+||||||||||+++|+|..++. .| .+.....+.. ....+.++|++|+..+++.+
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G-~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l---- 114 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSG-SVLLNGMPIDAKEMRAISAYVQQDDLFIPTL---- 114 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccee-EEEECCEECCHHHHhhhceeeccccccCccC----
Confidence 333344556799999999999999999999999988663 45 5554332221 11223579999998777766
Q ss_pred hhHHHHHHhccccC---CcHHH----HHHHHHc-CCceEEecch------hhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 198 KFLEFASVHGNLYG---TSVEA----VEAVADA-GKRCILDIDV------QGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 198 ~~~E~~~~~~~~~g---~~~~~----i~~~~~~-g~~~vldld~------~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.|++.|...++. ...+. +.+.++. ++....+-.. .++...++++...+.+++.+|++++||||+
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 88898887655431 12222 2222222 1111111100 123333456667777999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCH-HHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKL-EECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdl-eea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
+++|..+...+.+.++++..+ ..++|+++|++ .++++.+++++.+.+|+++..|++.+.
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~--------g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQK--------GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhC--------CCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHH
Confidence 999999999999999886531 23888999988 478899999999999999988887655
No 333
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=3.5e-16 Score=141.33 Aligned_cols=199 Identities=14% Similarity=0.011 Sum_probs=124.8
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc---ccc-cCCeeEEecChHH-HHHHHhhhhhHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AME-KDGVHYHFTERSV-MEKAIKDGKFLEFA 203 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~-~~~i~yvfq~~~l-f~~~~~~~~~~E~~ 203 (399)
...+|++.+|+||||+|||||++.|+|.+.|..| .+....+... ..+ .+..+.++|+..+ |+. ++.|.+
T Consensus 23 ~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G-~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF-----tv~eVV 96 (259)
T COG4559 23 DLRPGEVLAILGPNGAGKSTLLKALSGELSPDSG-EVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF-----TVQEVV 96 (259)
T ss_pred eccCCcEEEEECCCCccHHHHHHHhhCccCCCCC-eEeeCCcChhhCCHHHHHHHhhhcccCcccccce-----EHHHHH
Confidence 3458999999999999999999999999999888 5543322211 111 1235677887654 442 455555
Q ss_pred HHhccccC--Cc-HH-H--HHHHHHcC-CceEEecchhhHHHHHcCCcceeE------EEEcCCChHHHHHHHHhCCCCc
Q 015825 204 SVHGNLYG--TS-VE-A--VEAVADAG-KRCILDIDVQGARSVRASPLDAIF------IFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 204 ~~~~~~~g--~~-~~-~--i~~~~~~g-~~~vldld~~g~~~l~~~~~~~~~------ili~~P~lllLDEpl~~lD~~~ 270 (399)
.+...-++ .. .+ . .++++..- ..-+-.-+...+....+|+++... .-.-.+..++||||++++|...
T Consensus 97 ~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~H 176 (259)
T COG4559 97 QMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAH 176 (259)
T ss_pred HhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHH
Confidence 55433332 11 11 1 22222221 100000011001111122222222 2222334778999999999988
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
+....+..+.+..+ .+.++.+-||++-|...+|+++.+.+|+++..++|.+.++......|+.
T Consensus 177 Q~~tl~laR~la~~--------g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~vyg 239 (259)
T COG4559 177 QHHTLRLARQLARE--------GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYG 239 (259)
T ss_pred HHHHHHHHHHHHhc--------CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHHhC
Confidence 88887777776543 3578899999999999999999999999999999998887765555553
No 334
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.59 E-value=3e-16 Score=165.29 Aligned_cols=172 Identities=14% Similarity=0.020 Sum_probs=119.7
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChH-HHHHHHhhhhhHHHHHHh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERS-VMEKAIKDGKFLEFASVH 206 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~-lf~~~~~~~~~~E~~~~~ 206 (399)
....+|++++|+||||||||||+++|+|+.+|..| .+.... . ..++|+||++. +++.+ ++.+++.+.
T Consensus 343 l~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G-~i~~~~-~------~~i~~v~q~~~~~~~~~----tv~e~l~~~ 410 (552)
T TIGR03719 343 FKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG-TIKIGE-T------VKLAYVDQSRDALDPNK----TVWEEISGG 410 (552)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCe-EEEECC-c------eEEEEEeCCccccCCCC----cHHHHHHhh
Confidence 34569999999999999999999999999999888 554421 1 13899999853 44443 677777654
Q ss_pred ccccCCc--HHHHHHHHHc-CCce-EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 207 GNLYGTS--VEAVEAVADA-GKRC-ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 207 ~~~~g~~--~~~i~~~~~~-g~~~-vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
...++.. .......+.. +... ..+..+..+....++++..+.+++.+|++++||||++++|+.+.+.+.+.|.++.
T Consensus 411 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 490 (552)
T TIGR03719 411 LDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA 490 (552)
T ss_pred ccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC
Confidence 3222211 1222233332 1110 1122222333345666777779999999999999999999999999988888641
Q ss_pred HHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC-Ceee
Q 015825 283 EEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG-SIAT 322 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~-~~~~ 322 (399)
. ++|+++||++.+...+++++.+.+ +.+.
T Consensus 491 ----------~-~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 491 ----------G-CAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred ----------C-eEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 1 688999999999988999998875 4544
No 335
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.59 E-value=3.5e-16 Score=164.89 Aligned_cols=174 Identities=15% Similarity=0.017 Sum_probs=120.2
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecCh-HHHHHHHhhhhhHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTER-SVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~-~lf~~~~~~~~~~E~~~ 204 (399)
.+....+|++++|+||||||||||+++|+|+.+|..| .+.... . ..++|+||+. .+++.+ ++.+++.
T Consensus 343 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G-~i~~~~-~------~~i~~v~q~~~~~~~~~----tv~e~l~ 410 (556)
T PRK11819 343 LSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSG-TIKIGE-T------VKLAYVDQSRDALDPNK----TVWEEIS 410 (556)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECC-c------eEEEEEeCchhhcCCCC----CHHHHHH
Confidence 3344569999999999999999999999999999888 554421 1 1389999986 344443 6777776
Q ss_pred HhccccCCc--HHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 205 VHGNLYGTS--VEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 205 ~~~~~~g~~--~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
+....++.. .......++. +.. ...+-.+..+....++++..+.+++.+|++++||||++++|+.+++.+.+.|..
T Consensus 411 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 490 (556)
T PRK11819 411 GGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLE 490 (556)
T ss_pred hhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHh
Confidence 543222211 1222223322 111 011112222333355666777799999999999999999999999999988876
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC-Ceee
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG-SIAT 322 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~-~~~~ 322 (399)
+. . ++|+++||++.+...+++++.+.+ |.+.
T Consensus 491 ~~----------~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 491 FP----------G-CAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred CC----------C-eEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 31 1 688999999999999999888874 5544
No 336
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.58 E-value=2.6e-16 Score=137.14 Aligned_cols=124 Identities=18% Similarity=0.157 Sum_probs=94.2
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH 206 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~ 206 (399)
+....+|++++|+||||||||||+++|+|+.++..| .+....+ ..++|+||
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~~~-------~~i~~~~~--------------------- 70 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG-IVTWGST-------VKIGYFEQ--------------------- 70 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCce-EEEECCe-------EEEEEEcc---------------------
Confidence 345569999999999999999999999999999888 5544321 23678877
Q ss_pred ccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 015825 207 GNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK 286 (399)
Q Consensus 207 ~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~ 286 (399)
.+..+ +++...+.+++.+|++.++|||++++|+.++..+.+.++++
T Consensus 71 -----lS~G~------------------------~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----- 116 (144)
T cd03221 71 -----LSGGE------------------------KMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----- 116 (144)
T ss_pred -----CCHHH------------------------HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----
Confidence 01010 11122233678889999999999999999999888888763
Q ss_pred hccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 287 QGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 287 ~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
..++++++|+++++...+++++.+.+|
T Consensus 117 ------~~til~~th~~~~~~~~~d~v~~l~~g 143 (144)
T cd03221 117 ------PGTVILVSHDRYFLDQVATKIIELEDG 143 (144)
T ss_pred ------CCEEEEEECCHHHHHHhCCEEEEEeCC
Confidence 127889999999998888888877665
No 337
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.3e-16 Score=157.96 Aligned_cols=187 Identities=18% Similarity=0.165 Sum_probs=131.6
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-cc---cCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-ME---KDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-~~---~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
...+|+.++|+|+|||||||+++.|.|.+.+..| .+.....+... .+ +..++++.|...+|.. +..+|+.
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G-~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-----Tlr~NL~ 433 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQG-SITLNGVEIASLDEQALRETISVLTQRVHLFSG-----TLRDNLR 433 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHhccCCCCC-eeeECCcChhhCChhhHHHHHhhhccchHHHHH-----HHHHHHh
Confidence 3469999999999999999999999999999988 66543322211 11 1236778888877754 6777776
Q ss_pred HhccccCCcHHHHHHHHHc-CCceEEecchhhHHH-----------HHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 205 VHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARS-----------VRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~-----------l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
.... ..+.+++.++++. ++..++.-.|+++.. ..+++...+.+++.+.++.+|||||.++|+.|++
T Consensus 434 lA~~--~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~ 511 (573)
T COG4987 434 LANP--DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511 (573)
T ss_pred hcCC--CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHH
Confidence 6432 2345555555443 221111112222211 1234455566888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
++.+++.+..+ .-|.+++||.+-.+ +.+++++.+.+|+++.+|++.++...
T Consensus 512 ~vL~ll~~~~~---------~kTll~vTHrL~~l-e~~drIivl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 512 QVLALLFEHAE---------GKTLLMVTHRLRGL-ERMDRIIVLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred HHHHHHHHHhc---------CCeEEEEecccccH-hhcCEEEEEECCeeeecCCHHhhhcc
Confidence 99999876332 12899999988654 57999999999999999998877753
No 338
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.58 E-value=1.1e-15 Score=168.48 Aligned_cols=189 Identities=15% Similarity=0.096 Sum_probs=145.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee--ecCCC--ccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS--HTTRA--PRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~--~ttr~--~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
..+|++++++|||||||||++++|.|..++..|.... |+-.. ........+||.||...+++.+ |..|.+.+
T Consensus 588 V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~l----T~rEhL~~ 663 (885)
T KOG0059|consen 588 VPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEEL----TGREHLEF 663 (885)
T ss_pred ecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhc----cHHHHHHH
Confidence 4689999999999999999999999999999995544 21111 1111234589999999999888 89999999
Q ss_pred hccccCCcHHHHHHHHHcCCceEEecchhhHHHH------HcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEAVADAGKRCILDIDVQGARSV------RASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l------~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
.+++.|.+..++.+.++..... +.+.+.+.+.. .+++...+.+++.+|++.+||||+.++||..+..++..+.
T Consensus 664 ~arlrG~~~~di~~~v~~ll~~-~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~ 742 (885)
T KOG0059|consen 664 YARLRGLPRSDIGSAIEKLLRL-VGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIA 742 (885)
T ss_pred HHHHcCCChhHHHHHHHHHHHH-cCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 9999998887777665442211 12222111111 2445666779999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
++++. +. .+|+.+|.++|+-..++|+..+.+|+....|++.++.
T Consensus 743 ~~~k~-------g~-aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 743 RLRKN-------GK-AIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHhc-------CC-EEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 87653 12 6789999999999999999999999999988876443
No 339
>PLN03232 ABC transporter C family member; Provisional
Probab=99.57 E-value=3.7e-16 Score=180.56 Aligned_cols=189 Identities=10% Similarity=0.042 Sum_probs=139.7
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+|+||||||||+++|.+++++..| .|.....+. ....++.++|++|++.+|. +++.+|+
T Consensus 1257 l~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G-~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~-----gTIr~NL 1330 (1495)
T PLN03232 1257 FFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKG-RIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFS-----GTVRFNI 1330 (1495)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc-eEEECCEEhhhCCHHHHHhhcEEECCCCeeeC-----ccHHHHc
Confidence 44569999999999999999999999999999999 665433221 1222456899999988774 3888988
Q ss_pred HHhccccCCcHHHHHHHHHc-CC-----------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GK-----------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~-----------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.. ..+.+++.++++. +. ...+.-.-..+...++|+...+.+++.+|++++|||+|+++|.+++
T Consensus 1331 ~~~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te 1407 (1495)
T PLN03232 1331 DPFS---EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTD 1407 (1495)
T ss_pred CCCC---CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 7643 2345555554442 11 1111110011223456777778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+.+++.|++.. ..+|+++++|.++.. ..+|+++++++|+++..|++.+++..+.
T Consensus 1408 ~~Iq~~L~~~~---------~~~TvI~IAHRl~ti-~~~DrIlVL~~G~ivE~Gt~~eLl~~~~ 1461 (1495)
T PLN03232 1408 SLIQRTIREEF---------KSCTMLVIAHRLNTI-IDCDKILVLSSGQVLEYDSPQELLSRDT 1461 (1495)
T ss_pred HHHHHHHHHHc---------CCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 99999988632 246999999999554 5699999999999999999998887654
No 340
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.57 E-value=4.2e-16 Score=179.01 Aligned_cols=191 Identities=14% Similarity=0.118 Sum_probs=134.8
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc---------------------------------------------
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM--------------------------------------------- 160 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~--------------------------------------------- 160 (399)
.+....+|+.++|+||||||||||+++|.+++.|.
T Consensus 1187 lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 (1466)
T PTZ00265 1187 LTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGS 1266 (1466)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33455699999999999999999999999999873
Q ss_pred ---------ccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCcHHHHHHHHHc-CCc
Q 015825 161 ---------FGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADA-GKR 226 (399)
Q Consensus 161 ---------~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~ 226 (399)
.| .|.....+.+ ...+..++||+|++.+|.. ++.||+.|... ..+.+++.++++. +..
T Consensus 1267 ~~~~~~~~~~G-~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-----TIreNI~~g~~--~at~eeI~~A~k~A~l~ 1338 (1466)
T PTZ00265 1267 GEDSTVFKNSG-KILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-----SIYENIKFGKE--DATREDVKRACKFAAID 1338 (1466)
T ss_pred ccccccCCCCC-eEEECCEEHHhCCHHHHHhhccEeCCCCccccc-----cHHHHHhcCCC--CCCHHHHHHHHHHcCCH
Confidence 44 3332221111 1123458999999988753 89999988633 2345566555443 211
Q ss_pred eEEecchh-----------hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcce
Q 015825 227 CILDIDVQ-----------GARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFD 295 (399)
Q Consensus 227 ~vldld~~-----------g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t 295 (399)
.++.--|+ .+...++|+...+.+|+.+|++++|||+|+++|.++++.+++.|..+... ...|
T Consensus 1339 ~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~-------~~~T 1411 (1466)
T PTZ00265 1339 EFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK-------ADKT 1411 (1466)
T ss_pred HHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhcc-------CCCE
Confidence 11110011 12234677778888999999999999999999999999999999875310 1238
Q ss_pred EEEeCCCHHHHHHHHHHhhcccC----Ceee-ecCCCccccC
Q 015825 296 HILYNDKLEECYENLKKHLGLDG----SIAT-NHQTSPKGID 332 (399)
Q Consensus 296 ~Viv~hdleea~~~l~~ii~~~~----~~~~-~~~~~~~~~~ 332 (399)
+|+++|.+ .+++.+|+++++.+ |.++ ..|+..+++.
T Consensus 1412 vIiIaHRl-sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1412 IITIAHRI-ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred EEEEechH-HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 99999999 45678999999998 7755 6788777765
No 341
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.57 E-value=6.2e-16 Score=169.19 Aligned_cols=186 Identities=19% Similarity=0.174 Sum_probs=140.9
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
...+|+.++|+|||||||||++.+|.+.+.|..| .+.......+. ..+..++.|-|+|.+|.. +..||+.
T Consensus 1012 ~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G-~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-----TIrENI~ 1085 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTVISLLERFYDPDAG-KVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-----TIRENIA 1085 (1228)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC-eEEECCcccccCCHHHHHHhcceeccCchhhcc-----cHHHHHh
Confidence 3469999999999999999999999999999998 66543333221 223468999999998864 7889999
Q ss_pred HhccccCCcHHHHHHHHHcCC--ceEEecchhhHH-----------HHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 205 VHGNLYGTSVEAVEAVADAGK--RCILDIDVQGAR-----------SVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g~--~~vldld~~g~~-----------~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
|+.. ..+.+++.++++..- ..+..+ |+|+. ..++|+...+.+++.+|++++|||.|++||.+++
T Consensus 1086 YG~~--~vs~~eIi~Aak~ANaH~FI~sL-P~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSE 1162 (1228)
T KOG0055|consen 1086 YGSE--EVSEEEIIEAAKLANAHNFISSL-PQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESE 1162 (1228)
T ss_pred ccCC--CCCHHHHHHHHHHhhhHHHHhcC-cCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhH
Confidence 8722 256666665544211 111111 22221 1356677778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
..+|+.|.++.. ..|.|++.|-+ .+.+.+|.|+++.+|.++.+|+..+++..
T Consensus 1163 rvVQeALd~a~~---------gRT~IvIAHRL-STIqnaD~I~Vi~~G~VvE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1163 RVVQEALDRAME---------GRTTIVIAHRL-STIQNADVIAVLKNGKVVEQGTHDELLAK 1214 (1228)
T ss_pred HHHHHHHHHhhc---------CCcEEEEecch-hhhhcCCEEEEEECCEEEecccHHHHHhC
Confidence 999999998653 23889999988 45568999999999999999998888873
No 342
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.56 E-value=7.4e-16 Score=164.77 Aligned_cols=176 Identities=13% Similarity=0.067 Sum_probs=118.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChH-HHHHHHhhhhhHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERS-VMEKAIKDGKFLEFAS 204 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~-lf~~~~~~~~~~E~~~ 204 (399)
.++...+|++++|+||||||||||+++|+|.++|..| .+.. ... -.++|++|+.. +++.+ ++.+++.
T Consensus 338 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G-~i~~-~~~------~~i~y~~q~~~~l~~~~----tv~e~l~ 405 (635)
T PRK11147 338 FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSG-RIHC-GTK------LEVAYFDQHRAELDPEK----TVMDNLA 405 (635)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEE-CCC------cEEEEEeCcccccCCCC----CHHHHHH
Confidence 3344569999999999999999999999999999888 5543 111 13899999753 44443 6777765
Q ss_pred HhccccCCc--HHHHHHHHHcCCc--eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 205 VHGNLYGTS--VEAVEAVADAGKR--CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 205 ~~~~~~g~~--~~~i~~~~~~g~~--~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
+....+... ...+...+..... ...+-.+..+....++++..+.+++.+|++++||||++++|+.+.+.+.+.++.
T Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 485 (635)
T PRK11147 406 EGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDS 485 (635)
T ss_pred hhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHh
Confidence 532111111 2223333322110 001111112222345666677799999999999999999999988888777765
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc-CCeeeec
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD-GSIATNH 324 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~-~~~~~~~ 324 (399)
+ ..++|+++||.+.+...+++++.+. +|.+...
T Consensus 486 ~-----------~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 486 Y-----------QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred C-----------CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEc
Confidence 2 1288999999999988899999886 6766643
No 343
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=2.3e-15 Score=132.14 Aligned_cols=219 Identities=13% Similarity=0.104 Sum_probs=146.9
Q ss_pred HHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------------ccccC
Q 015825 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------------AMEKD 178 (399)
Q Consensus 112 ~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------------~~~~~ 178 (399)
.+.+.+|-..-....++...+|++++|+|.||||||||+++|.+.+.|..| .+.+..+.-. ...+.
T Consensus 11 ~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G-~v~Y~~r~~~~~dl~~msEaeRR~L~RT 89 (258)
T COG4107 11 GLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG-TVTYRMRDGQPRDLYTMSEAERRRLLRT 89 (258)
T ss_pred hhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCC-eEEEEcCCCCchhHhhhchHHHHHHhhh
Confidence 344555544333333455679999999999999999999999999999999 5544322111 11112
Q ss_pred CeeEEecChHH-HHHHHhhh-hhHHH-HHHhccccCCcHHHHHHHHHcCCc--eEEecchhhHHHHHcCCcceeEEEEcC
Q 015825 179 GVHYHFTERSV-MEKAIKDG-KFLEF-ASVHGNLYGTSVEAVEAVADAGKR--CILDIDVQGARSVRASPLDAIFIFICP 253 (399)
Q Consensus 179 ~i~yvfq~~~l-f~~~~~~~-~~~E~-~~~~~~~~g~~~~~i~~~~~~g~~--~vldld~~g~~~l~~~~~~~~~ili~~ 253 (399)
.-|++.|++.. .......+ .+-|- .....+.||..+......+++-.. ..+|-.|..+....+|+.+.+.-+++.
T Consensus 90 eWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~ 169 (258)
T COG4107 90 EWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTR 169 (258)
T ss_pred ccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccC
Confidence 34677776532 11111111 22222 233456687766666555544221 122223334444456677777889999
Q ss_pred CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 254 P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
|.+..||||+.++|..-+..+...++.+-.++.. ..||+|||+.-|--..++.++|..|.++..+-...++..
T Consensus 170 PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~l-------a~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDD 242 (258)
T COG4107 170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGL-------AVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDD 242 (258)
T ss_pred CceEEecCCCCCcchhhHHHHHHHHHHHHHhcCc-------eEEEEechhHHHHHhhhcceeecCCCEeccccccccccC
Confidence 9999999999999988777888888877766543 789999999888888899999999999988888888877
Q ss_pred Ccchh
Q 015825 334 PADHS 338 (399)
Q Consensus 334 p~~~~ 338 (399)
|....
T Consensus 243 P~hPY 247 (258)
T COG4107 243 PHHPY 247 (258)
T ss_pred CCCch
Confidence 76544
No 344
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.56 E-value=3.2e-16 Score=151.41 Aligned_cols=177 Identities=16% Similarity=0.109 Sum_probs=118.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
....+|++++|+||||||||||+++|+|++++..| .+.... .++|++|++.+++ . ++.+++.+..
T Consensus 58 ~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G-~I~i~g---------~i~yv~q~~~l~~-~----tv~enl~~~~ 122 (282)
T cd03291 58 LKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG-KIKHSG---------RISFSSQFSWIMP-G----TIKENIIFGV 122 (282)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECC---------EEEEEeCcccccc-c----CHHHHhhccc
Confidence 44568999999999999999999999999999888 554322 2789999875554 2 5666665432
Q ss_pred cccCCcHHHHHHHHHc-CCc-----------eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 208 NLYGTSVEAVEAVADA-GKR-----------CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~-g~~-----------~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
. +. ...+...+.. +.. ..++-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.
T Consensus 123 ~-~~--~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~ 199 (282)
T cd03291 123 S-YD--EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIF 199 (282)
T ss_pred c-cC--HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence 1 11 1111111111 100 0011001112223345566667889999999999999999998888777
Q ss_pred HHH-HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 276 KRL-RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 276 ~~L-~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+ ..+. . ..++++++|+++.+ ..+++++.+.+|.++..+++.++..
T Consensus 200 ~~ll~~~~----~-----~~tIiiisH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 200 ESCVCKLM----A-----NKTRILVTSKMEHL-KKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred HHHHHHhh----C-----CCEEEEEeCChHHH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 654 3322 1 23888999999886 5799999999999887777666554
No 345
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.56 E-value=6.4e-16 Score=147.29 Aligned_cols=174 Identities=13% Similarity=0.100 Sum_probs=110.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee-----------ecCCCcc----ccc--cCCeeEEecChHHHHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-----------HTTRAPR----AME--KDGVHYHFTERSVMEK 192 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~-----------~ttr~~~----~~~--~~~i~yvfq~~~lf~~ 192 (399)
..+|++++|+||||||||||+++|+|++++..| .+. ....... ... ...++|+||....++.
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G-~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLG-KFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK 101 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch
Confidence 458999999999999999999999999999999 442 1111110 000 1135677777655542
Q ss_pred HHhhhhhHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
...+++.++.. .......+.+.++. +....++..+..+....+++...+.+++.+|++.++|||++++|+.++
T Consensus 102 -~~~~~i~~~l~-----~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~ 175 (255)
T cd03236 102 -AVKGKVGELLK-----KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQR 175 (255)
T ss_pred -HHHHHHHHHhc-----hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHH
Confidence 11122222211 01111222233322 111111222222223345566667788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
..+.+.++++.++ ..++++++|+++.+...+++++.+.+
T Consensus 176 ~~l~~~l~~l~~~--------~~tIIiiSHd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 176 LNAARLIRELAED--------DNYVLVVEHDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred HHHHHHHHHHHhc--------CCEEEEEECCHHHHHHhCCEEEEECC
Confidence 9999888876532 24889999999998888998877754
No 346
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.56 E-value=9.6e-16 Score=175.76 Aligned_cols=193 Identities=16% Similarity=0.108 Sum_probs=132.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC---CcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP---SMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~---~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+..+.+....+|++++|+||||||||||+++|+|..+ +..| .+.....+.....++.++|++|+..+++.+ +
T Consensus 778 iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G-~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~----T 852 (1394)
T TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGG-DRLVNGRPLDSSFQRSIGYVQQQDLHLPTS----T 852 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCccee-EEEECCEECChhhhcceeeecccccCCCCC----C
Confidence 3333444556999999999999999999999999986 4557 555433322112234589999986666555 8
Q ss_pred hHHHHHHhccccC---CcHHH----HHHHHHc-CCceEEecch----hhHHHHHcCCcceeEEEEcCCC-hHHHHHHHHh
Q 015825 199 FLEFASVHGNLYG---TSVEA----VEAVADA-GKRCILDIDV----QGARSVRASPLDAIFIFICPPS-MEELEERLRA 265 (399)
Q Consensus 199 ~~E~~~~~~~~~g---~~~~~----i~~~~~~-g~~~vldld~----~g~~~l~~~~~~~~~ili~~P~-lllLDEpl~~ 265 (399)
+.|++.+...++. .+..+ +.+.++. ++....+-.+ .++...+++++....+++.+|+ +++||||+++
T Consensus 853 v~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsg 932 (1394)
T TIGR00956 853 VRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSG 932 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCC
Confidence 8888887654331 22222 2233322 1111111111 1233445667777789999996 8999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHH-HHHHHHhhcccCC-eeeecCCC
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEEC-YENLKKHLGLDGS-IATNHQTS 327 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea-~~~l~~ii~~~~~-~~~~~~~~ 327 (399)
+|..+...+.+.|+++..+ ..++|+++|+++.. +..+|+++.+.+| +++..+++
T Consensus 933 LD~~~~~~i~~~L~~la~~--------g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 933 LDSQTAWSICKLMRKLADH--------GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred CCHHHHHHHHHHHHHHHHc--------CCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 9999999999999987532 34889999998864 5678999999886 88877664
No 347
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1e-15 Score=163.55 Aligned_cols=180 Identities=11% Similarity=0.019 Sum_probs=118.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
.+....+|++++|+||||||||||+++|+|..+|..| .+..... ..++|++|+...+ +....++.++...
T Consensus 331 isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G-~i~~~~~-------~~igy~~Q~~~~~--l~~~~~~~~~~~~ 400 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSG-EIGLAKG-------IKLGYFAQHQLEF--LRADESPLQHLAR 400 (638)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEECCC-------EEEEEecCcchhh--CCccchHHHHHHH
Confidence 3344569999999999999999999999999999889 5543211 1379999974211 1001133443221
Q ss_pred hccccCCcHHHHHHHHHcCCc--eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEAVADAGKR--CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~g~~--~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
.. .......+...+..... ...+-.+..+....++++..+.+++.+|++++||||++++|+.+.+.+.+.|..+
T Consensus 401 ~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-- 476 (638)
T PRK10636 401 LA--PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-- 476 (638)
T ss_pred hC--chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--
Confidence 10 01112233333322110 0111112222223456666777899999999999999999999999998888763
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee-ecCCCc
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT-NHQTSP 328 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~-~~~~~~ 328 (399)
.. ++|+++||.+.+...+++++.+.+|.++ ..++..
T Consensus 477 --------~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 513 (638)
T PRK10636 477 --------EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLE 513 (638)
T ss_pred --------CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHH
Confidence 12 8899999999999999999999998876 445443
No 348
>PLN03130 ABC transporter C family member; Provisional
Probab=99.56 E-value=6.3e-16 Score=179.12 Aligned_cols=190 Identities=12% Similarity=0.044 Sum_probs=140.1
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|+.++|+|+||||||||+++|.+++++..| .|.....+. ....++.++|++|++.+|. +++.+
T Consensus 1258 is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G-~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~-----GTIre 1331 (1622)
T PLN03130 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERG-RILIDGCDISKFGLMDLRKVLGIIPQAPVLFS-----GTVRF 1331 (1622)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCc-eEEECCEecccCCHHHHHhccEEECCCCcccc-----ccHHH
Confidence 3344569999999999999999999999999999998 565432221 1222356899999998775 38889
Q ss_pred HHHHhccccCCcHHHHHHHHHcC-C-----------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADAG-K-----------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~g-~-----------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
|+.+... .+.+++.++++.. . ...+.-.-..+...++|+...+.+++.+|++++|||+|+++|.+
T Consensus 1332 NLd~~~~---~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~ 1408 (1622)
T PLN03130 1332 NLDPFNE---HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVR 1408 (1622)
T ss_pred HhCcCCC---CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 9876542 2455555554431 1 11110000112234567777788999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+++.+++.|++.. ..+|+++++|.++... .+|+++++++|+++..+++.+++..+
T Consensus 1409 Te~~Iq~~I~~~~---------~~~TvI~IAHRL~tI~-~~DrIlVLd~G~IvE~Gt~~eLl~~~ 1463 (1622)
T PLN03130 1409 TDALIQKTIREEF---------KSCTMLIIAHRLNTII-DCDRILVLDAGRVVEFDTPENLLSNE 1463 (1622)
T ss_pred HHHHHHHHHHHHC---------CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 9999999988742 2469999999997654 69999999999999999999888664
No 349
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.55 E-value=6.3e-16 Score=161.95 Aligned_cols=160 Identities=16% Similarity=0.116 Sum_probs=113.1
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
.+....+|+.++|+||||||||||++.|+|+++|..| .+.....+. ....++.++|++|++.+|.. ++.||
T Consensus 354 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-----TI~eN 427 (529)
T TIGR02868 354 VSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQG-EVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-----TVRDN 427 (529)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEhhhHHHHHHhheEEEccCcccccc-----cHHHH
Confidence 3345579999999999999999999999999999999 665433222 22223468999999987753 78899
Q ss_pred HHHhccccCCcHHHHHHHHHc-CCceEEecchh-----------hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 203 ASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQ-----------GARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~-----------g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+.+.... .+.+++.++++. +...++.--|+ .+...++|+...+.+++.+|++++||||++++|+++
T Consensus 428 I~~g~~~--~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~t 505 (529)
T TIGR02868 428 LRLGRPD--ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGT 505 (529)
T ss_pred HhccCCC--CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 8875321 244555554443 11111000011 122235677777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDK 302 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hd 302 (399)
++.+++.+.+.. ...|+++++|.
T Consensus 506 e~~I~~~l~~~~---------~~~TvIiItHr 528 (529)
T TIGR02868 506 ESELLEDLLAAL---------SGKTVVVITHH 528 (529)
T ss_pred HHHHHHHHHHhc---------CCCEEEEEecC
Confidence 999999988642 23489999996
No 350
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.55 E-value=4.3e-15 Score=131.44 Aligned_cols=204 Identities=12% Similarity=0.122 Sum_probs=138.9
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHH-HHHHHhhhhhHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSV-MEKAIKDGKFLEFA 203 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~l-f~~~~~~~~~~E~~ 203 (399)
...+|..++++|.||||||||.++|+|..+|..| .+....++... ...+.+-++||++.. |...+.-|+.++.-
T Consensus 35 tL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG-~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~P 113 (267)
T COG4167 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG-EILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFP 113 (267)
T ss_pred EecCCcEEEEEccCCCcHhHHHHHHhcccCCCCc-eEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcch
Confidence 3458999999999999999999999999999999 66544333221 112236689998643 33333334444432
Q ss_pred HHhccccCCcHHHHHHHHHc----CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADA----GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~----g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
.- .+..-.+....+++.+. |+. .-....++....-++|++..+.+++..|++.+.||.+.++|...+.++...+
T Consensus 114 L~-l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~ 192 (267)
T COG4167 114 LR-LNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLM 192 (267)
T ss_pred hh-hcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHH
Confidence 11 11111111111111111 110 0011223333334566777778999999999999999999999999999998
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
-+++++++. .+|+|+.++-......|++++|.+|..+..|++.+++..|..+...+
T Consensus 193 LeLQek~Gi-------SyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkR 248 (267)
T COG4167 193 LELQEKQGI-------SYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKR 248 (267)
T ss_pred HHHHHHhCc-------eEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHH
Confidence 888877643 78999999888888899999999999999999999999997655443
No 351
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.54 E-value=7.1e-16 Score=176.78 Aligned_cols=196 Identities=13% Similarity=0.099 Sum_probs=135.1
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc----CCcccceeeecCCCcc---ccccCCeeEEecChHHHHHHHh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF----PSMFGFSVSHTTRAPR---AMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~----~~~~g~~i~~ttr~~~---~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
..+.+....+|++++|+||||||||||+++|+|.. .+..| .+.....+.. ...+..++|++|+...++.+
T Consensus 77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G-~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l-- 153 (1394)
T TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEG-VITYDGITPEEIKKHYRGDVVYNAETDVHFPHL-- 153 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCcee-EEEECCEehHHHHhhcCceeEEeccccccCCCC--
Confidence 33344455699999999999999999999999986 34677 5654332211 11223589999997777766
Q ss_pred hhhhHHHHHHhcccc-------CCcHHHHH-----HHHHc-CCceEEec-----chhhHHHHHcCCcceeEEEEcCCChH
Q 015825 196 DGKFLEFASVHGNLY-------GTSVEAVE-----AVADA-GKRCILDI-----DVQGARSVRASPLDAIFIFICPPSME 257 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~-------g~~~~~i~-----~~~~~-g~~~vldl-----d~~g~~~l~~~~~~~~~ili~~P~ll 257 (399)
++.|++.+...++ +...++.. ..++. ++....+- .+.++....++++..+.+++.+|+++
T Consensus 154 --TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 154 --TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred --CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 8888887754432 12222211 12221 22111110 01223333566677777999999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCH-HHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 258 ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKL-EECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 258 lLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdl-eea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
+||||++++|..+...+.+.|+++.++. ..++|+++|++ +++....|+++.+.+|+++..+++.+.
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~-------g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANIL-------DTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhc-------CCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 9999999999999999999999876432 23788999975 788889999999999999888776554
No 352
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.54 E-value=1.1e-15 Score=160.27 Aligned_cols=170 Identities=18% Similarity=0.167 Sum_probs=117.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+||||||||||++.|+|+++|..| .+.....+.. ...++.++|++|++.+|. +++.||+
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-----~ti~~Ni 416 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEG-SIAVNGVPLADADADSWRDQIAWVPQHPFLFA-----GTIAENI 416 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEehhhCCHHHHHhheEEEcCCCcccC-----cCHHHHH
Confidence 44569999999999999999999999999999988 6654332211 122346899999987764 2788988
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEEecch-----------hhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCILDIDV-----------QGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vldld~-----------~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... .+.+++.++++. +...+++--| ......++|+...+.+++.+|++++||||++++|+.++
T Consensus 417 ~~~~~~--~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~ 494 (529)
T TIGR02857 417 RLARPD--ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETE 494 (529)
T ss_pred hccCCC--CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 775322 234444444432 2111111001 11222346667777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
+.+.+.+.++. ...|+++++|+++.. ..+|+++.
T Consensus 495 ~~i~~~l~~~~---------~~~t~i~itH~~~~~-~~~d~i~~ 528 (529)
T TIGR02857 495 ALVTEALRALA---------QGRTVLLVTHRLALA-ERADRIVV 528 (529)
T ss_pred HHHHHHHHHhc---------CCCEEEEEecCHHHH-HhCCEEEe
Confidence 99998888743 134899999998654 45666543
No 353
>PRK13409 putative ATPase RIL; Provisional
Probab=99.54 E-value=1.1e-15 Score=161.54 Aligned_cols=216 Identities=15% Similarity=0.093 Sum_probs=132.7
Q ss_pred chhhhhccCCCceEEEEeCCC--------h-HHHH-HHHHHhCCe-EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhh
Q 015825 86 RILVIKKGSSSDDCLWFLEVD--------T-PYVR-EQKKVVGAE-VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLM 154 (399)
Q Consensus 86 r~L~~~~~~~~~~~i~~~k~D--------~-~~~~-~l~~~~g~~-v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~ 154 (399)
+.-++.|..=+-.-||+.|+- . ++++ ++...+|.. ....+.. ...+|++++|+||||||||||+++|+
T Consensus 42 ~~~~~~e~~c~~c~~c~~~cp~~a~~i~~~p~~~~~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~ 120 (590)
T PRK13409 42 GKPVISEELCIGCGICVKKCPFDAISIVNLPEELEEEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILS 120 (590)
T ss_pred CCceeeHhhccccccccccCCcceEEEeeCchhhccCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHh
Confidence 333344444444567777762 1 2232 244555532 2222233 46799999999999999999999999
Q ss_pred hccCCcccceee-----------ecCCCccc------cccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCcHHHH
Q 015825 155 KEFPSMFGFSVS-----------HTTRAPRA------MEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAV 217 (399)
Q Consensus 155 ~~~~~~~g~~i~-----------~ttr~~~~------~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i 217 (399)
|+++|..| .+. ........ .....++|.+|....++... .+++.+++.+.. ....+
T Consensus 121 G~l~p~~G-~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~-~~tv~e~l~~~~-----~~~~~ 193 (590)
T PRK13409 121 GELIPNLG-DYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVF-KGKVRELLKKVD-----ERGKL 193 (590)
T ss_pred CCccCCCc-cccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhh-cchHHHHHHhhh-----HHHHH
Confidence 99999888 543 11111100 00112455566544444322 225555554311 11223
Q ss_pred HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceE
Q 015825 218 EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDH 296 (399)
Q Consensus 218 ~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~ 296 (399)
.+.++. +.....+-.+..+....++++..+.+++.+|++++||||++++|+.++..+.+.++++.+ + .++
T Consensus 194 ~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g-------~tv 264 (590)
T PRK13409 194 DEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--G-------KYV 264 (590)
T ss_pred HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--C-------CEE
Confidence 333322 221122222333333456667777899999999999999999999999999999988642 2 278
Q ss_pred EEeCCCHHHHHHHHHHhhcccC
Q 015825 297 ILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 297 Viv~hdleea~~~l~~ii~~~~ 318 (399)
++++|+++++...+++++.+.+
T Consensus 265 IivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 265 LVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred EEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999888899888765
No 354
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.54 E-value=1.5e-15 Score=175.89 Aligned_cols=187 Identities=13% Similarity=0.018 Sum_probs=137.7
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+|+||||||||++.|.+++.+..| .|.....+. ....++.++|++|++.+|. +++.+|+
T Consensus 1307 ~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G-~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~-----gTIr~NL 1380 (1522)
T TIGR00957 1307 VTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEG-EIIIDGLNIAKIGLHDLRFKITIIPQDPVLFS-----GSLRMNL 1380 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCC-eEEECCEEccccCHHHHHhcCeEECCCCcccC-----ccHHHHc
Confidence 44569999999999999999999999999999888 565433222 1222346899999998775 3788888
Q ss_pred HHhccccCCcHHHHHHHHHc-C-----------CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-G-----------KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g-----------~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
...+ ..+.+++.++++. + ....+.-.-..+...++|+...+.+++.+|++++|||+++++|.+++
T Consensus 1381 dp~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te 1457 (1522)
T TIGR00957 1381 DPFS---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457 (1522)
T ss_pred Cccc---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 6433 2345555555443 1 11111110011233456777777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
..+++.|++.. ..+|+++++|.++. +..+|+++++++|+++..|++.+++..
T Consensus 1458 ~~Iq~~l~~~~---------~~~TvI~IAHRl~t-i~~~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1458 NLIQSTIRTQF---------EDCTVLTIAHRLNT-IMDYTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred HHHHHHHHHHc---------CCCEEEEEecCHHH-HHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999887632 24699999999955 556899999999999999999888765
No 355
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.53 E-value=2.1e-15 Score=158.66 Aligned_cols=179 Identities=11% Similarity=0.055 Sum_probs=120.1
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|+.++|+||||||||||++.|+|+++|..| .+.....+. ....++.++|++|++.+|+.. ..+
T Consensus 342 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~t-----i~~ 415 (547)
T PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSG-EILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQL-----LGP 415 (547)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEECCCCCHHHHhhheEEEecChhHHHHh-----hcc
Confidence 3344569999999999999999999999999999988 555432221 112234689999998887653 223
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CCceEEecc-----hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GKRCILDID-----VQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld-----~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
+. ...+.+.+.+.++. +....++.. -......++|+...+.+++.+|++++||||++++|+.+++.+.
T Consensus 416 n~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~ 489 (547)
T PRK10522 416 EG------KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFY 489 (547)
T ss_pred cc------CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 20 01122233332322 111111110 0112223456666777999999999999999999999999988
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeec
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNH 324 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~ 324 (399)
+.+.+.... ...|+++++|+++ ....+++++.+++|.+...
T Consensus 490 ~~l~~~~~~-------~~~tvi~itH~~~-~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 490 QVLLPLLQE-------MGKTIFAISHDDH-YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHh-------CCCEEEEEEechH-HHHhCCEEEEEECCEEEEe
Confidence 888654321 1238899999984 5678999999999887754
No 356
>PLN03073 ABC transporter F family; Provisional
Probab=99.53 E-value=1.8e-15 Score=162.92 Aligned_cols=172 Identities=11% Similarity=0.077 Sum_probs=113.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHH--H
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEF--A 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~--~ 203 (399)
.++...+|++++|+||||||||||+++|+|+++|..| .+.... ...++|++|+.. ..+ ++.++ .
T Consensus 528 vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G-~I~~~~-------~~~igyv~Q~~~--~~l----~~~~~~~~ 593 (718)
T PLN03073 528 LNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSG-TVFRSA-------KVRMAVFSQHHV--DGL----DLSSNPLL 593 (718)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-eEEECC-------ceeEEEEecccc--ccC----CcchhHHH
Confidence 3344569999999999999999999999999999888 554321 124899999741 111 11111 1
Q ss_pred HHhccccCCcHHHHHHHHHcC-Cc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAG-KR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g-~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~ 281 (399)
.+.....+.....+...+... .. ...+..+..+....++++..+.+++.+|++++||||++++|+.+.+.+.+.+..+
T Consensus 594 ~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~ 673 (718)
T PLN03073 594 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF 673 (718)
T ss_pred HHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 111111122334444444331 11 0111112222333456666777999999999999999999998887776666542
Q ss_pred HHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 282 KEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 282 ~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
. .++|+++||++.+...+++++.+.+|.++
T Consensus 674 ----------~-gtvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 674 ----------Q-GGVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred ----------C-CEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1 28899999999999999999999988776
No 357
>PLN03140 ABC transporter G family member; Provisional
Probab=99.53 E-value=3.5e-15 Score=171.02 Aligned_cols=193 Identities=13% Similarity=0.087 Sum_probs=134.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc---ccceeeecCCCccc-cccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM---FGFSVSHTTRAPRA-MEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~---~g~~i~~ttr~~~~-~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|++++|+||||||||||+++|+|.+.+. .| .+.....+... ..+..++|++|+...++.+ ++.|
T Consensus 184 vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G-~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l----TV~E 258 (1470)
T PLN03140 184 ASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSG-EITYNGYRLNEFVPRKTSAYISQNDVHVGVM----TVKE 258 (1470)
T ss_pred CeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCccee-EEEECCEechhhcccceeEEecccccCCCcC----cHHH
Confidence 33455699999999999999999999999998876 67 55543322111 1134589999997777776 8888
Q ss_pred HHHHhccccCC----------cHHH----------H------------------HHHHHc-CCceEE-----ecchhhHH
Q 015825 202 FASVHGNLYGT----------SVEA----------V------------------EAVADA-GKRCIL-----DIDVQGAR 237 (399)
Q Consensus 202 ~~~~~~~~~g~----------~~~~----------i------------------~~~~~~-g~~~vl-----dld~~g~~ 237 (399)
++.+...+++. ..++ + ...++. |+.... +-.+.++.
T Consensus 259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS 338 (1470)
T PLN03140 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS 338 (1470)
T ss_pred HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence 88876554321 0110 0 001111 111100 10112223
Q ss_pred HHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCH-HHHHHHHHHhhcc
Q 015825 238 SVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKL-EECYENLKKHLGL 316 (399)
Q Consensus 238 ~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdl-eea~~~l~~ii~~ 316 (399)
...++++....+++.+|++++||||++++|..+..++.+.|+++.++. ..++++++|++ +++++..|+++.+
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~-------g~Tviis~Hqp~~~i~~lfD~vilL 411 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLT-------EATVLMSLLQPAPETFDLFDDIILL 411 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhc-------CCEEEEEecCCCHHHHHHhheEEEe
Confidence 334667777789999999999999999999999999999999875432 23888999864 7899999999999
Q ss_pred cCCeeeecCCCccc
Q 015825 317 DGSIATNHQTSPKG 330 (399)
Q Consensus 317 ~~~~~~~~~~~~~~ 330 (399)
.+|+++..|++.+.
T Consensus 412 ~~G~ivy~G~~~~~ 425 (1470)
T PLN03140 412 SEGQIVYQGPRDHI 425 (1470)
T ss_pred eCceEEEeCCHHHH
Confidence 99999888876554
No 358
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.53 E-value=7.5e-16 Score=154.32 Aligned_cols=186 Identities=20% Similarity=0.190 Sum_probs=133.0
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+...+|+.++++||||||||||.++|.|..+|..| .+....-. .+...-+.+||.+|+.++|+- |+.||+
T Consensus 357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G-~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-----TIaeNI 430 (580)
T COG4618 357 FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG-SVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-----TIAENI 430 (580)
T ss_pred eEecCCceEEEECCCCccHHHHHHHHHcccccCCC-cEEecchhhhcCCHHHhccccCcCcccceecCC-----cHHHHH
Confidence 33458999999999999999999999999999888 66643221 222222458999999998864 788887
Q ss_pred HHhccccCCcHHHHHHHH-HcCCc-eEEecchhhHH-----------HHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 204 SVHGNLYGTSVEAVEAVA-DAGKR-CILDIDVQGAR-----------SVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~-~~g~~-~vldld~~g~~-----------~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
.-.+.- .+.+.+-++. ..+-+ .++.+ |+|+. ..++|+...+.+|.-+|.+.+||||-+++|.+.
T Consensus 431 aRf~~~--~d~~kIieAA~lAgvHelIl~l-P~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~G 507 (580)
T COG4618 431 ARFGEE--ADPEKVIEAARLAGVHELILRL-PQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEG 507 (580)
T ss_pred Hhcccc--CCHHHHHHHHHHcChHHHHHhC-cCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhH
Confidence 654421 1222222222 11111 11111 22222 235666677779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+..+.+.+..++.+ .+++|+++|-+ .++..+|+++.+++|.+...|...+++
T Consensus 508 E~AL~~Ai~~~k~r--------G~~vvviaHRP-s~L~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 508 EAALAAAILAAKAR--------GGTVVVIAHRP-SALASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred HHHHHHHHHHHHHc--------CCEEEEEecCH-HHHhhcceeeeecCChHHhcCCHHHHH
Confidence 99999999887643 66899999987 567789999999999888888765554
No 359
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.53 E-value=2.4e-15 Score=158.58 Aligned_cols=178 Identities=13% Similarity=0.083 Sum_probs=120.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|+.++|+||||||||||++.|+|+++|..| .+........ ...+..++|++|++.+|... ..+
T Consensus 361 vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~t-----i~~ 434 (555)
T TIGR01194 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG-EILLDGAAVSADSRDDYRDLFSAIFADFHLFDDL-----IGP 434 (555)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHHHhhCcEEccChhhhhhh-----hhc
Confidence 3345569999999999999999999999999999999 6654332221 11234589999998877653 333
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CCceEEecchhh------HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQG------ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g------~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
+.. .....+.+.+.++. +....++--|+| +...++|+...+.+++.+|++++||||++++|+.+++.+
T Consensus 435 n~~-----~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i 509 (555)
T TIGR01194 435 DEG-----EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFF 509 (555)
T ss_pred ccc-----cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence 310 01123333333332 221111111222 223356667777799999999999999999999999999
Q ss_pred HHHHHH-HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 275 LKRLRN-AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 275 ~~~L~~-~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
.+.+.+ +.. ...|+++++|+++ ....+|+++.+.+|+++.
T Consensus 510 ~~~l~~~~~~--------~~~tiiiisH~~~-~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 510 YEELLPDLKR--------QGKTIIIISHDDQ-YFELADQIIKLAAGCIVK 550 (555)
T ss_pred HHHHHHHHHh--------CCCEEEEEeccHH-HHHhCCEEEEEECCEEEE
Confidence 876643 221 1238999999986 567899999999987764
No 360
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.52 E-value=2.8e-15 Score=172.34 Aligned_cols=180 Identities=12% Similarity=0.103 Sum_probs=122.9
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee-cCCCcc----ccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH-TTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~-ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
.+....+|++++|+||||||||||+++|+|++.|..| .+.. ...... ...+..++|++|++.+|.. ++.
T Consensus 404 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G-~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-----TI~ 477 (1466)
T PTZ00265 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEG-DIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-----SIK 477 (1466)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCC-eEEEeCCcchhhCCHHHHHHhccEecccccchhc-----cHH
Confidence 3445679999999999999999999999999999999 5543 222111 1123468999999887752 788
Q ss_pred HHHHHhccc----------c---------------------------------------------CCcHHHHHHHHHc-C
Q 015825 201 EFASVHGNL----------Y---------------------------------------------GTSVEAVEAVADA-G 224 (399)
Q Consensus 201 E~~~~~~~~----------~---------------------------------------------g~~~~~i~~~~~~-g 224 (399)
|++.+.... + ....+.+.++++. +
T Consensus 478 eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~ 557 (1466)
T PTZ00265 478 NNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVL 557 (1466)
T ss_pred HHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhC
Confidence 888764210 0 0111222222211 1
Q ss_pred C-----------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCc
Q 015825 225 K-----------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGI 293 (399)
Q Consensus 225 ~-----------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~ 293 (399)
. ...++-....+...++|+...+.+++.+|++++||||++++|+.++..+++.|.++..+ ..
T Consensus 558 l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~-------~g 630 (1466)
T PTZ00265 558 IHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGN-------EN 630 (1466)
T ss_pred cHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhc-------CC
Confidence 1 11111111122233566677778999999999999999999999999999999886431 12
Q ss_pred ceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 294 FDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 294 ~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
.|+|+++|+++.+ ..+++++.+.+|
T Consensus 631 ~TvIiIsHrls~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 631 RITIIIAHRLSTI-RYANTIFVLSNR 655 (1466)
T ss_pred CEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 4899999999765 689999999875
No 361
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=3.6e-15 Score=159.39 Aligned_cols=196 Identities=17% Similarity=0.135 Sum_probs=116.8
Q ss_pred HhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC--------ccccccCCeeEEecCh
Q 015825 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA--------PRAMEKDGVHYHFTER 187 (399)
Q Consensus 116 ~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~--------~~~~~~~~i~yvfq~~ 187 (399)
.+|-..++.+.++...+|++++|+||||||||||+++|+|.++|..| .+...... ........++|+++..
T Consensus 10 ~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G-~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~ 88 (638)
T PRK10636 10 RRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGG-SYTFPGNWQLAWVNQETPALPQPALEYVIDGD 88 (638)
T ss_pred EeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEecCCCEEEEEecCCCCCCCCHHHHHHHhh
Confidence 34545555555566679999999999999999999999999999888 55432110 0000011123333322
Q ss_pred HHHHHHHhhhhhH-------HHHHHhcc---ccC-CcHHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCC
Q 015825 188 SVMEKAIKDGKFL-------EFASVHGN---LYG-TSVEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPP 254 (399)
Q Consensus 188 ~lf~~~~~~~~~~-------E~~~~~~~---~~g-~~~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P 254 (399)
..+..+...-... .+...... .-+ .....+...+.. +.. ..++..+..+....++++..+.+|+.+|
T Consensus 89 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P 168 (638)
T PRK10636 89 REYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRS 168 (638)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCC
Confidence 2222110000000 00000000 000 111223333332 111 1122222233334566677778999999
Q ss_pred ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 255 ~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
++++||||++++|+.+.+.+.+.|..+ ..++|+++||.+.+...+++++.+.+|.+..
T Consensus 169 ~lLLLDEPtn~LD~~~~~~L~~~L~~~-----------~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 169 DLLLLDEPTNHLDLDAVIWLEKWLKSY-----------QGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred CEEEEcCCCCcCCHHHHHHHHHHHHhC-----------CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 999999999999999888887777652 1288999999999999999999999998753
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.52 E-value=2.6e-15 Score=173.72 Aligned_cols=192 Identities=14% Similarity=0.072 Sum_probs=139.8
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhh
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
.+.+....+|+.++|+|+||||||||++.|.+++.+..| .|.....+. ....++.++|++|++.+|. +++
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G-~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~-----gTI 1400 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGG-EIRVNGREIGAYGLRELRRQFSMIPQDPVLFD-----GTV 1400 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEcccCCHHHHHhcceEECCCCcccc-----ccH
Confidence 334445569999999999999999999999999999888 555433222 1222456899999998775 378
Q ss_pred HHHHHHhccccCCcHHHHHHHHHc-CCceEE-------e--cch--hhHHHHHcCCcceeEEEEcC-CChHHHHHHHHhC
Q 015825 200 LEFASVHGNLYGTSVEAVEAVADA-GKRCIL-------D--IDV--QGARSVRASPLDAIFIFICP-PSMEELEERLRAR 266 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vl-------d--ld~--~g~~~l~~~~~~~~~ili~~-P~lllLDEpl~~l 266 (399)
.+|+.... ..+.+++.++++. +...++ | +.. ..+...++|+...+.+|+.. |++++|||+++++
T Consensus 1401 reNIdp~~---~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaL 1477 (1560)
T PTZ00243 1401 RQNVDPFL---EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANI 1477 (1560)
T ss_pred HHHhCccc---CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccC
Confidence 88886533 2345566655543 221111 1 000 11222356677777799984 8999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
|..+++.+++.|++.. ..+|+|+++|.++ ++..+|+++++++|+++..|++.+++..+
T Consensus 1478 D~~te~~Iq~~L~~~~---------~~~TvI~IAHRl~-ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~ 1535 (1560)
T PTZ00243 1478 DPALDRQIQATVMSAF---------SAYTVITIAHRLH-TVAQYDKIIVMDHGAVAEMGSPRELVMNR 1535 (1560)
T ss_pred CHHHHHHHHHHHHHHC---------CCCEEEEEeccHH-HHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999888632 2469999999994 55689999999999999999999888654
No 363
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.52 E-value=7.5e-15 Score=155.73 Aligned_cols=200 Identities=16% Similarity=0.128 Sum_probs=142.2
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC---cccceeeecCCCccc-cccCCeeEEecChHHHHHH
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS---MFGFSVSHTTRAPRA-MEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~---~~g~~i~~ttr~~~~-~~~~~i~yvfq~~~lf~~~ 193 (399)
.++.+..+.+....+|++.+++||||||||||+++|+|..+. ..| .+....++... ....-.+|+.|+..+++.+
T Consensus 41 ~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G-~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~L 119 (613)
T KOG0061|consen 41 KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSG-EILLNGRPRDSRSFRKISGYVQQDDVLLPTL 119 (613)
T ss_pred ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceE-EEEECCccCchhhhhheeEEEcccccccccc
Confidence 345566656666679999999999999999999999998864 455 55554433222 2223479999998888888
Q ss_pred HhhhhhHHHHHHhccccCC---cHHHHHHHHHc-----CCce----EEe-cchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 194 IKDGKFLEFASVHGNLYGT---SVEAVEAVADA-----GKRC----ILD-IDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~---~~~~i~~~~~~-----g~~~----vld-ld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
|+.|.+.|..+++-. +.++.++++++ ++.. ++. ....+.....++++....=++.+|.++.+|
T Consensus 120 ----TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflD 195 (613)
T KOG0061|consen 120 ----TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLD 195 (613)
T ss_pred ----cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEec
Confidence 999999998776432 33444443332 1111 111 011222223345556666788899999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
|||+++|..+..++-+.|+++.++ ..++|..-| .-.+.+...|+++.+..|..+..|++.+.
T Consensus 196 EPTSGLDS~sA~~vv~~Lk~lA~~--------grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 196 EPTSGLDSFSALQVVQLLKRLARS--------GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPREL 258 (613)
T ss_pred CCCCCcchhhHHHHHHHHHHHHhC--------CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHH
Confidence 999999999999999999987654 347887777 66788999999999999999888876543
No 364
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.4e-15 Score=140.58 Aligned_cols=196 Identities=17% Similarity=0.153 Sum_probs=116.9
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-----ccccccCCeeEEecChHH-HHHH
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTERSV-MEKA 193 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~~i~yvfq~~~l-f~~~ 193 (399)
+.+.-+-+....+|+-++|+||||||||||++++++.+++..| .+....+. .....++.+||+...... |..
T Consensus 44 k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg-~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~- 121 (257)
T COG1119 44 KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG-DVTLLGRRFGKGETIFELRKRIGLVSSELHERFRV- 121 (257)
T ss_pred EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCC-ceeeeeeeccCCcchHHHHHHhCccCHHHHhhccc-
Confidence 4444444455679999999999999999999999999999766 33221111 112223347777433211 211
Q ss_pred HhhhhhHHHH---HH--hcccc-CCcHHHHH---HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 194 IKDGKFLEFA---SV--HGNLY-GTSVEAVE---AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 194 ~~~~~~~E~~---~~--~~~~~-g~~~~~i~---~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
..++.+.+ .| .+.++ .....+.. ..++. +...+.+-....+....+++.-.+.+++.+|.+++||||+
T Consensus 122 --~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~ 199 (257)
T COG1119 122 --RETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA 199 (257)
T ss_pred --ccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcc
Confidence 11222222 11 11112 12222221 11111 1111111111111112233344556999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecC
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQ 325 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~ 325 (399)
.++|...++.+.+++.++... ....+.++|+|..+|+..-+.+++.+.+|.++..+
T Consensus 200 ~GLDl~~re~ll~~l~~~~~~------~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 200 QGLDLIAREQLLNRLEELAAS------PGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred ccCChHHHHHHHHHHHHHhcC------CCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 999999999999988876532 12347889999999999999998888888777654
No 365
>PLN03140 ABC transporter G family member; Provisional
Probab=99.51 E-value=2.9e-15 Score=171.75 Aligned_cols=194 Identities=14% Similarity=0.086 Sum_probs=132.0
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC--cccceeeecCCCcc-ccccCCeeEEecChHHHHHHHhhh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS--MFGFSVSHTTRAPR-AMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~--~~g~~i~~ttr~~~-~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
.+..+.+....+|++++|+||||||||||+++|+|...+ ..| .+.....+.. ....+.++|++|+..+++.+
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G-~I~inG~~~~~~~~~~~igyv~Q~d~~~~~l---- 968 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-DIRISGFPKKQETFARISGYCEQNDIHSPQV---- 968 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccc-eEEECCccCChHHhhhheEEEccccccCCCC----
Confidence 344444455679999999999999999999999998653 456 5544332221 11124579999997777665
Q ss_pred hhHHHHHHhcccc---CCcHHH----HHHHHHc-CCceEEecc-----hhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 198 KFLEFASVHGNLY---GTSVEA----VEAVADA-GKRCILDID-----VQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 198 ~~~E~~~~~~~~~---g~~~~~----i~~~~~~-g~~~vldld-----~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
++.|++.+...++ ..+.++ +.+.++. ++....+-- ..++....++++..+.+++.+|++++||||++
T Consensus 969 TV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTs 1048 (1470)
T PLN03140 969 TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1048 (1470)
T ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 8888887764332 112222 2222222 111111110 12333345666777789999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHH-HHHHHHHHhhcccC-CeeeecCCC
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLE-ECYENLKKHLGLDG-SIATNHQTS 327 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdle-ea~~~l~~ii~~~~-~~~~~~~~~ 327 (399)
++|..+...+.+.|+++.++ ..++|+++|+++ ++...+++++.+.+ |+++..+++
T Consensus 1049 gLD~~~a~~v~~~L~~l~~~--------g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1049 GLDARAAAIVMRTVRNTVDT--------GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred CCCHHHHHHHHHHHHHHHHC--------CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence 99999999999999987532 238899999987 56788899999985 787776654
No 366
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.48 E-value=9e-15 Score=168.98 Aligned_cols=189 Identities=16% Similarity=0.072 Sum_probs=136.1
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhh
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
.+.+....+|+.++|+|+||||||||+++|.++++ ..| .|.....+. ....+..++|++|++.+|. +++
T Consensus 1236 ~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G-~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~-----GTI 1308 (1490)
T TIGR01271 1236 QDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEG-EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFS-----GTF 1308 (1490)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCc-EEEECCEEcccCCHHHHHhceEEEeCCCccCc-----cCH
Confidence 33344556999999999999999999999999987 567 555432221 1223456899999998775 378
Q ss_pred HHHHHHhccccCCcHHHHHHHHHcC------------CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 200 LEFASVHGNLYGTSVEAVEAVADAG------------KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~i~~~~~~g------------~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
.+|+...+. .+.+++.++++.. +...+.-.-..+...++|+...+.+++.+|++++|||+++++|
T Consensus 1309 R~NLdp~~~---~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD 1385 (1490)
T TIGR01271 1309 RKNLDPYEQ---WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLD 1385 (1490)
T ss_pred HHHhCcccC---CCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCC
Confidence 888865431 2445555544431 1111110001122345666777789999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
..++..+++.|++.. ..+|+++++|.++. +..+|+++++.+|+++..++|.+++.
T Consensus 1386 ~~Te~~I~~~L~~~~---------~~~TvI~IaHRl~t-i~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1386 PVTLQIIRKTLKQSF---------SNCTVILSEHRVEA-LLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHHHHHHHHHHHHHc---------CCCEEEEEecCHHH-HHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999998732 24699999999965 45699999999999999999988875
No 367
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.47 E-value=1.7e-12 Score=116.82 Aligned_cols=173 Identities=24% Similarity=0.286 Sum_probs=119.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCccc--ceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFG--FSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g--~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
|++++|+|||||||||+++.|+..+....+ ...++++++... .+..|.|.+...|..+...+.+.+...+.+..|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASA---GGENHIALSTEEFDHREDGGAFALSWQAHGLSY 77 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCC---CCccccccCHHHHHHHHHCCCEEEEEeecCccc
Confidence 578999999999999999999998754311 233567765432 355688888777776666666776666667778
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
+.+. .+...+..+..++++.........+........+++. ++.+++-+|+..|+....+.+.+++...... ..
T Consensus 78 g~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~-~~--- 151 (179)
T TIGR02322 78 GIPA-EIDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNIT-ASPDVLAQRLAARGRESREEIEERLARSARF-AA--- 151 (179)
T ss_pred cChH-HHHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEE-CCHHHHHHHHHHcCCCCHHHHHHHHHHHhhc-cc---
Confidence 8886 4666667788888888766555555444444555554 6789999999988776777888887643211 10
Q ss_pred CCcceEE-EeCC-CHHHHHHHHHHhhc
Q 015825 291 SGIFDHI-LYND-KLEECYENLKKHLG 315 (399)
Q Consensus 291 ~~~~t~V-iv~h-dleea~~~l~~ii~ 315 (399)
..++++ +.+. +++++...+.+++.
T Consensus 152 -~~~~~~vi~~~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 152 -APADVTTIDNSGSLEVAGETLLRLLR 177 (179)
T ss_pred -ccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 223555 5554 89999998887653
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.47 E-value=1.6e-14 Score=149.88 Aligned_cols=187 Identities=17% Similarity=0.095 Sum_probs=118.2
Q ss_pred HHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHH
Q 015825 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 114 ~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~ 193 (399)
...+|.+.++-..+....+|+.+||+|+||||||||+++|+|...+..| .+.+... -.++|+.|+....+..
T Consensus 10 s~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G-~i~~~~~-------~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 10 SLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSG-EVTRPKG-------LRVGYLSQEPPLDPEK 81 (530)
T ss_pred EEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCC-eEeecCC-------ceEEEeCCCCCcCCCc
Confidence 3456777777777777789999999999999999999999999999999 5543211 0167888876544321
Q ss_pred HhhhhhHHHHHHhc-----------ccc----------------------CC-cHHHHHHHHHcCCceEE-ecchhhHHH
Q 015825 194 IKDGKFLEFASVHG-----------NLY----------------------GT-SVEAVEAVADAGKRCIL-DIDVQGARS 238 (399)
Q Consensus 194 ~~~~~~~E~~~~~~-----------~~~----------------------g~-~~~~i~~~~~~g~~~vl-dld~~g~~~ 238 (399)
++.+.+.-.. ..+ +. ....+..++. ++.+-- +-....+..
T Consensus 82 ----tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~-gLg~~~~~~~~~~LSG 156 (530)
T COG0488 82 ----TVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALL-GLGFPDEDRPVSSLSG 156 (530)
T ss_pred ----cHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHh-cCCCCcccCchhhcCH
Confidence 1221111000 000 00 0011111111 111000 111111222
Q ss_pred HHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 239 VRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 239 l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
.++.++..+.+|+.+|++++|||||+.||.++.+.+...|..+. . ++|+|+||-+-.=..+.+++.+..
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~----------g-tviiVSHDR~FLd~V~t~I~~ld~ 225 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP----------G-TVIVVSHDRYFLDNVATHILELDR 225 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC----------C-cEEEEeCCHHHHHHHhhheEEecC
Confidence 23444555669999999999999999999988888877777521 2 889999998877777888888888
Q ss_pred Ceeeec
Q 015825 319 SIATNH 324 (399)
Q Consensus 319 ~~~~~~ 324 (399)
+.+...
T Consensus 226 g~l~~y 231 (530)
T COG0488 226 GKLTPY 231 (530)
T ss_pred CceeEe
Confidence 766543
No 369
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=9.4e-15 Score=128.85 Aligned_cols=133 Identities=17% Similarity=0.179 Sum_probs=92.6
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||+|||||+++|+|.+++..| .+........ ......++|+||
T Consensus 20 ~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G-~i~~~~~~~~~~~~~~~~~~i~~~~q------------------ 80 (157)
T cd00267 20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG-EILIDGKDIAKLPLEELRRRIGYVPQ------------------ 80 (157)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEEcccCCHHHHHhceEEEee------------------
Confidence 44568999999999999999999999999988777 4443221110 011233566665
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
.+.. .+++...+.+++.+|++.+||||++++|..++..+.+.+.++..
T Consensus 81 --------lS~G------------------------~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~ 128 (157)
T cd00267 81 --------LSGG------------------------QRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE 128 (157)
T ss_pred --------CCHH------------------------HHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 0000 01111222355667899999999999999999999888887643
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
. ..++++++|+++++...+++++.+.++
T Consensus 129 ~--------~~tii~~sh~~~~~~~~~d~i~~l~~g 156 (157)
T cd00267 129 E--------GRTVIIVTHDPELAELAADRVIVLKDG 156 (157)
T ss_pred C--------CCEEEEEeCCHHHHHHhCCEEEEEeCc
Confidence 2 238899999999988777887766553
No 370
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.46 E-value=1.8e-14 Score=129.74 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=92.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
+...+|++++|+||||||||||++++.+ ..| .+....... ......+.|++| . .+++...+..
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G-~v~~~~~~~-~~~~~~~~~~~q----~-------~~l~~~~L~~ 78 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASG-KARLISFLP-KFSRNKLIFIDQ----L-------QFLIDVGLGY 78 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhh----cCC-cEEECCccc-ccccccEEEEhH----H-------HHHHHcCCCc
Confidence 4556999999999999999999999864 345 333222111 111123566655 0 1111111100
Q ss_pred cccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcC--CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 015825 208 NLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP--PSMEELEERLRARGTETEDQILKRLRNAKEEI 285 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~--P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l 285 (399)
.. ++-.+..+....+++...+.+++.+ |+++++|||++++|+.+.+.+.+.++++.+.
T Consensus 79 ~~-------------------~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~- 138 (176)
T cd03238 79 LT-------------------LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL- 138 (176)
T ss_pred cc-------------------cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-
Confidence 00 0000001111223344455578888 9999999999999999999999999876421
Q ss_pred HhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCee
Q 015825 286 KQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIA 321 (399)
Q Consensus 286 ~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~ 321 (399)
..++++++|+++++ ..+++++.+.+++.
T Consensus 139 -------g~tvIivSH~~~~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 139 -------GNTVILIEHNLDVL-SSADWIIDFGPGSG 166 (176)
T ss_pred -------CCEEEEEeCCHHHH-HhCCEEEEECCCCC
Confidence 23889999999875 57888888876543
No 371
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.45 E-value=5.5e-15 Score=147.14 Aligned_cols=188 Identities=20% Similarity=0.201 Sum_probs=131.5
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+...+|++++++||||+||||+++.|.+.+....| .|.......+. ..+..+|.+||+..+|.. +...|+
T Consensus 559 F~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sG-sI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-----TI~yNI 632 (790)
T KOG0056|consen 559 FTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSG-SITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-----TILYNI 632 (790)
T ss_pred EEecCCcEEEEECCCCCchhHHHHHHHHHhhccCc-eEEEcCchHHHHHHHHHHHhcCcccCcceeecc-----eeeehe
Confidence 34468999999999999999999999999988777 66544333221 123358999999887754 455555
Q ss_pred HHhccccCCcHHHHHHHHHcCC-c-eEEecchhhHHH------H-----HcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 204 SVHGNLYGTSVEAVEAVADAGK-R-CILDIDVQGARS------V-----RASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~-~-~vldld~~g~~~------l-----~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
.|..- +...+++.++.++.. . .++. -|++... + .+|++..+..++..|.+.+|||.++++|..+
T Consensus 633 ryak~--~AsneevyaAAkAA~IHdrIl~-fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~t 709 (790)
T KOG0056|consen 633 RYAKP--SASNEEVYAAAKAAQIHDRILQ-FPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNT 709 (790)
T ss_pred eecCC--CCChHHHHHHHHHhhHHHHHhc-CchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCcc
Confidence 55422 122344443333211 0 0111 2333322 1 2455566668888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.+||+.|.++... -|.|++.|.+.... .+|.++..++|.++..|+.++++...
T Consensus 710 ER~IQaaL~rlca~---------RTtIVvAHRLSTiv-nAD~ILvi~~G~IvErG~HeeLl~rd 763 (790)
T KOG0056|consen 710 ERAIQAALARLCAN---------RTTIVVAHRLSTIV-NADLILVISNGRIVERGRHEELLKRD 763 (790)
T ss_pred HHHHHHHHHHHhcC---------CceEEEeeeehhee-cccEEEEEeCCeEeecCcHHHHHhcc
Confidence 99999999987532 27788888775554 57889999999999999988887663
No 372
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.45 E-value=1.6e-14 Score=155.04 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=115.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
+..+.+....+|+.++|+||||||||||+++|+|++++..| .+.... ...++|++|++.+++. ++.+
T Consensus 467 il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G-~i~~~~-------~~~i~~v~Q~~~l~~~-----tv~e 533 (659)
T TIGR00954 467 LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGG-RLTKPA-------KGKLFYVPQRPYMTLG-----TLRD 533 (659)
T ss_pred eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEeecC-------CCcEEEECCCCCCCCc-----CHHH
Confidence 33334455679999999999999999999999999988888 443321 2358999999765532 6777
Q ss_pred HHHHhccc-----cCCcHHHHHHHHHc-CCceEEec---------chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 202 FASVHGNL-----YGTSVEAVEAVADA-GKRCILDI---------DVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 202 ~~~~~~~~-----~g~~~~~i~~~~~~-g~~~vldl---------d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
++.+.... .+...+.+.+.++. +....++. ....+...++|+...+.+++.+|++++||||++++
T Consensus 534 ni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~L 613 (659)
T TIGR00954 534 QIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAV 613 (659)
T ss_pred HHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 77654321 11233444444432 11111110 00112223456667777999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
|+.+++.+.+.+++. ..++++++|+++.. ..+++++.+.
T Consensus 614 D~~~~~~l~~~l~~~-----------~~tvI~isH~~~~~-~~~d~il~l~ 652 (659)
T TIGR00954 614 SVDVEGYMYRLCREF-----------GITLFSVSHRKSLW-KYHEYLLYMD 652 (659)
T ss_pred CHHHHHHHHHHHHHc-----------CCEEEEEeCchHHH-HhCCEEEEEe
Confidence 999988888777541 23889999998764 6788877765
No 373
>PLN03232 ABC transporter C family member; Provisional
Probab=99.45 E-value=2.5e-14 Score=165.42 Aligned_cols=180 Identities=13% Similarity=0.089 Sum_probs=128.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
.+....+|+.++|+||||||||||++.|+|++++..|.... ....++|++|++.+|. +++.||+.+
T Consensus 636 inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~---------~~~~Iayv~Q~p~Lf~-----gTIreNI~f 701 (1495)
T PLN03232 636 INLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV---------IRGSVAYVPQVSWIFN-----ATVRENILF 701 (1495)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE---------ecCcEEEEcCcccccc-----ccHHHHhhc
Confidence 33455699999999999999999999999999988773321 1234899999987764 388899987
Q ss_pred hccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 206 HGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
... ...+.+.++++. |....+.-.-..+...++|+...+.+++.+|++.+||||++++|..+++.
T Consensus 702 g~~---~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~ 778 (1495)
T PLN03232 702 GSD---FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQ 778 (1495)
T ss_pred CCc---cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHH
Confidence 642 234444444432 11111110001122346677778889999999999999999999998887
Q ss_pred HHHH-HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 274 ILKR-LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 274 i~~~-L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+. +.... ...|+|+++|.+. .+..+|+++.+.+|.++..|+..++..
T Consensus 779 I~~~~l~~~l---------~~kT~IlvTH~~~-~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 779 VFDSCMKDEL---------KGKTRVLVTNQLH-FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHHHhhhhh---------cCCEEEEEECChh-hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 7554 43321 1238999999985 467899999999999999888777653
No 374
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.44 E-value=2.3e-14 Score=153.30 Aligned_cols=193 Identities=12% Similarity=-0.022 Sum_probs=114.4
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChH---
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERS--- 188 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~--- 188 (399)
++...++.+.++...+|++++|+||||||||||+++|+|.+++..| .+....... ........+++++...
T Consensus 13 ~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G-~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~ 91 (635)
T PRK11147 13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDG-RIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGI 91 (635)
T ss_pred eCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCe-EEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhh
Confidence 3434445445556679999999999999999999999999999888 544321100 0000111223333210
Q ss_pred --HHHHHHhhh----------hhHHHHHHhcc-------ccC-CcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeE
Q 015825 189 --VMEKAIKDG----------KFLEFASVHGN-------LYG-TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIF 248 (399)
Q Consensus 189 --lf~~~~~~~----------~~~E~~~~~~~-------~~g-~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ 248 (399)
.+... ... ...+++.+... ..+ .....+...++... +-.+..+..+....++++..+.
T Consensus 92 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-l~~~~~~~~LSgGekqRv~LAr 169 (635)
T PRK11147 92 EEQAEYL-KRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG-LDPDAALSSLSGGWLRKAALGR 169 (635)
T ss_pred HHHHHHH-HHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC-CCCCCchhhcCHHHHHHHHHHH
Confidence 00000 000 00011111000 000 11222333332211 1011122223334566677778
Q ss_pred EEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+|+.+|++++||||++++|+.+.+.+.+.|..+. .++|+++||.+.+...+++++.+.+|.+..
T Consensus 170 aL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-----------~tvlivsHd~~~l~~~~d~i~~L~~G~i~~ 233 (635)
T PRK11147 170 ALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-----------GSIIFISHDRSFIRNMATRIVDLDRGKLVS 233 (635)
T ss_pred HHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-----------CEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999888888887631 288999999999988899999999998764
No 375
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.42 E-value=3.1e-14 Score=164.96 Aligned_cols=180 Identities=13% Similarity=0.127 Sum_probs=127.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
....+|+.++++||||||||||+++|+|++++..| .+.... .++|++|++.+| .+++.||+.+..
T Consensus 659 l~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G-~i~~~g---------~i~yv~Q~~~l~-----~~Ti~eNI~~g~ 723 (1522)
T TIGR00957 659 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG-HVHMKG---------SVAYVPQQAWIQ-----NDSLRENILFGK 723 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCc-EEEECC---------EEEEEcCCcccc-----CCcHHHHhhcCC
Confidence 44569999999999999999999999999999988 554321 389999997654 238888887653
Q ss_pred cccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 208 NLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
. + ..+...+.++. |....++-....+...++|+...+.+++.+|++.+||||++++|+.+++.+.
T Consensus 724 ~-~--~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~ 800 (1522)
T TIGR00957 724 A-L--NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 800 (1522)
T ss_pred c-c--CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 2 1 22222222211 1111111111122334566677778999999999999999999999999988
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+....... ...++|+++|+++.+. .+++++.+.+|++...+++.++..
T Consensus 801 ~~l~~~~~~~------~~~tvIlvTH~~~~l~-~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 801 EHVIGPEGVL------KNKTRILVTHGISYLP-QVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred HHHhhhhhhh------cCCEEEEEeCChhhhh-hCCEEEEecCCeEEeeCCHHHHHh
Confidence 8886532111 1248999999997764 599999999999998888766653
No 376
>PLN03130 ABC transporter C family member; Provisional
Probab=99.42 E-value=3.5e-14 Score=164.82 Aligned_cols=179 Identities=15% Similarity=0.155 Sum_probs=128.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcc-cceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMF-GFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~-g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
.+....+|+.++|+||||||||||++.|+|.+++.. | .+.. ...++|++|++.+|. +++.||+.
T Consensus 636 inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG-~I~l---------~~~Iayv~Q~p~Lfn-----gTIreNI~ 700 (1622)
T PLN03130 636 INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA-SVVI---------RGTVAYVPQVSWIFN-----ATVRDNIL 700 (1622)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCc-eEEE---------cCeEEEEcCccccCC-----CCHHHHHh
Confidence 334557999999999999999999999999999988 7 4431 234899999987664 38899998
Q ss_pred HhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 205 VHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
+... + ..+.+.++++. |....+.-.-..+...++|+...+.++..+|++.+||||++++|..+.+
T Consensus 701 fg~~-~--d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~ 777 (1622)
T PLN03130 701 FGSP-F--DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGR 777 (1622)
T ss_pred CCCc-c--cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHH
Confidence 7643 2 34444444332 1111111000012234567777788999999999999999999998877
Q ss_pred HHH-HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 273 QIL-KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 273 ~i~-~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
.+. +.+.... ...|+|+++|.++ .+..+|+++.+.+|+++..|+..++..
T Consensus 778 ~I~~~~l~~~l---------~~kTvIlVTH~l~-~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 778 QVFDKCIKDEL---------RGKTRVLVTNQLH-FLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHHHHHhhHHh---------cCCEEEEEECCHh-HHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 664 4454321 1248999999985 567899999999999999888777653
No 377
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.41 E-value=3.9e-14 Score=163.75 Aligned_cols=179 Identities=17% Similarity=0.145 Sum_probs=125.1
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+.... .++|++|++.+|+ +++.||+.+
T Consensus 445 i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G-~i~~~g---------~iayv~Q~~~l~~-----~Ti~eNI~~ 509 (1490)
T TIGR01271 445 ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEG-KIKHSG---------RISFSPQTSWIMP-----GTIKDNIIF 509 (1490)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECC---------EEEEEeCCCccCC-----ccHHHHHHh
Confidence 3445569999999999999999999999999999988 554322 3899999987664 278888876
Q ss_pred hccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 206 HGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
... +. .....+.++. +....+.-....+...++++...+.+++.+|++.+||||++++|+.+.+.
T Consensus 510 g~~-~~--~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~ 586 (1490)
T TIGR01271 510 GLS-YD--EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKE 586 (1490)
T ss_pred ccc-cc--hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 532 21 1111111111 11000110011122335666777779999999999999999999999988
Q ss_pred HHHH-HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 274 ILKR-LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 274 i~~~-L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+. +..+. ...|+|+++|+++.+. .+++++.+.+|.+...+++.++..
T Consensus 587 i~~~~l~~~~---------~~~tvilvtH~~~~~~-~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 587 IFESCLCKLM---------SNKTRILVTSKLEHLK-KADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHh---------cCCeEEEEeCChHHHH-hCCEEEEEECCEEEEEcCHHHHHh
Confidence 8875 44321 1348999999998764 599999999999888887666553
No 378
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.41 E-value=6e-14 Score=122.86 Aligned_cols=178 Identities=19% Similarity=0.152 Sum_probs=117.0
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee-ec-------CCCcc---ccccCCeeEEecChHHHHHHHhh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-HT-------TRAPR---AMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~-~t-------tr~~~---~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
+....|++++|-||||+||||++++|.+.+.+..|+... |. +-.++ ...+..+||+.|.....|..
T Consensus 32 lsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV--- 108 (235)
T COG4778 32 LSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRV--- 108 (235)
T ss_pred EEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCc---
Confidence 445689999999999999999999999999999994432 31 11111 22234578887754444432
Q ss_pred hhhHHHHHHhccccCCcHHHHHHHHHcCC------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 197 GKFLEFASVHGNLYGTSVEAVEAVADAGK------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~~~~~i~~~~~~g~------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
..++.+.-...-.|.+.+..+.....-+ ..+..+.|..+....+|+......|+.+.++++||||++.+|..+
T Consensus 109 -~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~N 187 (235)
T COG4778 109 -SALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATN 187 (235)
T ss_pred -chHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccc
Confidence 3333333222335566555544332211 112233444444445777888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
+..+-+.+.+.+. ..+..|=+-||.+.--..+++++.+.
T Consensus 188 r~vVveli~e~Ka--------~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 188 RAVVVELIREAKA--------RGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred hHHHHHHHHHHHh--------cCceEEEeeccHHHHHHHhhheeecc
Confidence 9999999988653 24566767788655555677776655
No 379
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=8.7e-14 Score=123.77 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=103.9
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcccccc---CCeeEEecChHHHHHHH
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEK---DGVHYHFTERSVMEKAI 194 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~---~~i~yvfq~~~lf~~~~ 194 (399)
+..+++..-++...+|+.+.+.||||+|||||+++|+|+.+|..| .+...+.+...... ....|+=-.+.+=..+
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G-~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eL- 90 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAG-EVYWQGEPIQNVRESYHQALLYLGHQPGIKTEL- 90 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCC-eEEecCCCCccchhhHHHHHHHhhccccccchh-
Confidence 445555555555679999999999999999999999999999999 66654433222110 1122221112221233
Q ss_pred hhhhhHHHHHHhccccCC-cHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 195 KDGKFLEFASVHGNLYGT-SVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~-~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++.||+.|....++. +...+.+++.. ++.-+.|+....+...++.++..+..+++.+++-+||||+.++|.....
T Consensus 91 ---Ta~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a 167 (209)
T COG4133 91 ---TALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVA 167 (209)
T ss_pred ---hHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHH
Confidence 888999988777763 45555555544 4555555543333333445555666788888899999999999987766
Q ss_pred HHHHHHHH
Q 015825 273 QILKRLRN 280 (399)
Q Consensus 273 ~i~~~L~~ 280 (399)
.+-..+..
T Consensus 168 ~l~~l~~~ 175 (209)
T COG4133 168 LLTALMAA 175 (209)
T ss_pred HHHHHHHH
Confidence 66655554
No 380
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.39 E-value=2e-14 Score=131.82 Aligned_cols=157 Identities=14% Similarity=0.124 Sum_probs=92.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccc--------eeeecCCCc-cccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF--------SVSHTTRAP-RAMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~--------~i~~ttr~~-~~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
..+| +++|+||||||||||+++|.++.++..+. .+.+..... .......++|+||++..+...
T Consensus 20 ~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~------- 91 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI------- 91 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE-------
Confidence 3467 99999999999999999999987654221 122211111 011123489999987654100
Q ss_pred HHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEE----EcCCChHHHHHHHHhCCCCcHHHHHH
Q 015825 201 EFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIF----ICPPSMEELEERLRARGTETEDQILK 276 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~il----i~~P~lllLDEpl~~lD~~~~e~i~~ 276 (399)
. ....+.+.++. .-..+-.+..+....+++.....++ ..+|++.++|||++++|+...+.+.+
T Consensus 92 --------~---~~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~ 158 (197)
T cd03278 92 --------I---SQGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR 158 (197)
T ss_pred --------E---ehhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0 01122222222 0011111111122222333333333 35668999999999999999888888
Q ss_pred HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
.++++.+ ..++++++|+++.+ ..+++++.+.
T Consensus 159 ~l~~~~~---------~~tiIiitH~~~~~-~~~d~v~~~~ 189 (197)
T cd03278 159 LLKEFSK---------ETQFIVITHRKGTM-EAADRLYGVT 189 (197)
T ss_pred HHHHhcc---------CCEEEEEECCHHHH-hhcceEEEEE
Confidence 8887532 23789999999764 5677776654
No 381
>PTZ00243 ABC transporter; Provisional
Probab=99.39 E-value=6.7e-14 Score=162.09 Aligned_cols=186 Identities=12% Similarity=0.092 Sum_probs=125.4
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
+..+.+....+|++++|+||||||||||+++|+|.+++..| .+.. ...++|++|++.+|. +++.|
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G-~i~~---------~~~i~yv~Q~~~l~~-----~Tv~e 739 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEG-RVWA---------ERSIAYVPQQAWIMN-----ATVRG 739 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEE---------CCeEEEEeCCCccCC-----CcHHH
Confidence 33334455679999999999999999999999999999888 5432 124899999976542 37888
Q ss_pred HHHHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+.... ..+.+.+.++. |....++-....+...++++...+.+++.+|++.+||||++++|+.
T Consensus 740 nI~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~ 816 (1560)
T PTZ00243 740 NILFFDEE---DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816 (1560)
T ss_pred HHHcCChh---hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 88764321 11112221111 1110111001112223456666777999999999999999999998
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.+.+.+.+... .+ ...++|+++|+++.+ ..+++++.+.+|.+...++..++...+
T Consensus 817 ~~~~i~~~~~~~--~~------~~~TvIlvTH~~~~~-~~ad~ii~l~~G~i~~~G~~~~l~~~~ 872 (1560)
T PTZ00243 817 VGERVVEECFLG--AL------AGKTRVLATHQVHVV-PRADYVVALGDGRVEFSGSSADFMRTS 872 (1560)
T ss_pred HHHHHHHHHHHH--hh------CCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEecCHHHHHhCh
Confidence 777665543211 11 124899999999876 579999999999998888877766543
No 382
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=9.4e-14 Score=127.22 Aligned_cols=188 Identities=14% Similarity=0.133 Sum_probs=119.6
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc--CCcccceeee-----cCCCccccccCCeeEEecChHHHHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSH-----TTRAPRAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~--~~~~g~~i~~-----ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
.+....+|++.+|+||||||||||.+.|+|.- ..+.| .+.. +.-++....+.|+..-||.|..++-. +
T Consensus 23 vnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G-~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV----~ 97 (251)
T COG0396 23 VNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEG-EILFDGEDILELSPDERARAGIFLAFQYPVEIPGV----T 97 (251)
T ss_pred cceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecc-eEEECCcccccCCHhHHHhcCCEEeecCCccCCCe----e
Confidence 33445689999999999999999999999974 44556 4433 22233344456788889998877654 4
Q ss_pred hHHHHHHhccc-cCCc--HHHHHHHHHcCCceEEecchhhHHH--------HHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 199 FLEFASVHGNL-YGTS--VEAVEAVADAGKRCILDIDVQGARS--------VRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 199 ~~E~~~~~~~~-~g~~--~~~i~~~~~~g~~~vldld~~g~~~--------l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
+.+++....+. ++.. .......+++ ....+++++.-+.+ ..+.+...+.+++..|++.+||||=+++|
T Consensus 98 ~~~fLr~a~n~~~~~~~~~~~~~~~~~e-~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 98 NSDFLRAAMNARRGARGILPEFIKELKE-KAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHH-HHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 45554433222 1111 0111111111 11123333311111 12333445568889999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHH--HHhhcccCCeeeecCCCc
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENL--KKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l--~~ii~~~~~~~~~~~~~~ 328 (399)
.+.-+.+.+-+..++.+ .+.++++||.. ..+..+ +.+.++-+|+++..|.++
T Consensus 177 Idalk~V~~~i~~lr~~--------~~~~liITHy~-rll~~i~pD~vhvl~~GrIv~sG~~e 230 (251)
T COG0396 177 IDALKIVAEGINALREE--------GRGVLIITHYQ-RLLDYIKPDKVHVLYDGRIVKSGDPE 230 (251)
T ss_pred HHHHHHHHHHHHHHhcC--------CCeEEEEecHH-HHHhhcCCCEEEEEECCEEEecCCHH
Confidence 98888888888876542 44788999964 444555 777888999999988873
No 383
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1e-13 Score=136.36 Aligned_cols=191 Identities=17% Similarity=0.170 Sum_probs=130.6
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.++....|+.++++||||+||||+++.|.+.+.+..| .+....+..+ ...++-+|.++|+..+|.. +...
T Consensus 282 isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG-~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-----ti~y 355 (497)
T COG5265 282 ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG-SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-----TIAY 355 (497)
T ss_pred ccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc-eEEEcchhHHHhHHHHHHHHhCcCcccceehhh-----hHHH
Confidence 3344679999999999999999999999999999888 5543322221 1122348899999887754 3445
Q ss_pred HHHHhccccCCcHHHHHHHHHcCC-ceEEecchhhHHHH-----------HcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADAGK-RCILDIDVQGARSV-----------RASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~g~-~~vldld~~g~~~l-----------~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
+..|.+.- ...+++.++++... ..++..-|+|+... .+|+...+..++.+|+++++||.++++|..
T Consensus 356 ni~ygr~~--at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~ 433 (497)
T COG5265 356 NIKYGRPD--ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTH 433 (497)
T ss_pred HHhccCcc--ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhh
Confidence 55543321 12333333333221 11112223333221 245556666888899999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
++.++|..|+.... .-|.+++.|-+.... .+|+++++++|.++..|+..+++...
T Consensus 434 te~~iq~~l~~~~~---------~rttlviahrlsti~-~adeiivl~~g~i~erg~h~~ll~~~ 488 (497)
T COG5265 434 TEQAIQAALREVSA---------GRTTLVIAHRLSTII-DADEIIVLDNGRIVERGTHEELLAAG 488 (497)
T ss_pred HHHHHHHHHHHHhC---------CCeEEEEeehhhhcc-CCceEEEeeCCEEEecCcHHHHHHcC
Confidence 99999999998652 227788888775544 68899999999999999988777553
No 384
>PLN03073 ABC transporter F family; Provisional
Probab=99.33 E-value=2.3e-13 Score=146.75 Aligned_cols=73 Identities=12% Similarity=-0.017 Sum_probs=62.0
Q ss_pred HcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 240 RASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 240 ~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
.++++..+.+++.+|++++||||++++|+.+.+.+.+.|+.+ ..++++++||.+.+...+++++.+.+|
T Consensus 349 ~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----------~~tviivsHd~~~l~~~~d~i~~l~~g 417 (718)
T PLN03073 349 WRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-----------PKTFIVVSHAREFLNTVVTDILHLHGQ 417 (718)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc-----------CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 455566777999999999999999999999988888888763 128899999999988889999999999
Q ss_pred eeee
Q 015825 320 IATN 323 (399)
Q Consensus 320 ~~~~ 323 (399)
.+..
T Consensus 418 ~i~~ 421 (718)
T PLN03073 418 KLVT 421 (718)
T ss_pred EEEE
Confidence 8864
No 385
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.31 E-value=7.3e-13 Score=137.61 Aligned_cols=175 Identities=17% Similarity=0.113 Sum_probs=111.0
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhh
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
.++....+....+|..++|+||||+|||||+++|+|...+..| .+..... -.++|+.|+...+. ...++
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G-~v~~g~~-------v~igyf~Q~~~~l~---~~~t~ 403 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG-TVKVGET-------VKIGYFDQHRDELD---PDKTV 403 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCc-eEEeCCc-------eEEEEEEehhhhcC---ccCcH
Confidence 3555555555669999999999999999999999999888777 4432111 12789999874432 12266
Q ss_pred HHHHHHhccccCCcHHHHHHHHHcCCceEEec--chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 200 LEFASVHGNLYGTSVEAVEAVADAGKRCILDI--DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldl--d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
++++.-... ......++..+......--+. ....+....+.++..+.+++.+|.+++|||||+.+|.++.+.+.+.
T Consensus 404 ~d~l~~~~~--~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~a 481 (530)
T COG0488 404 LEELSEGFP--DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEA 481 (530)
T ss_pred HHHHHhhCc--cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 666543221 111333444333211000000 0000111123334455588889999999999999999998888888
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
|..+. -++|+|+||..-.-..+.+++...+
T Consensus 482 L~~f~-----------Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 482 LLDFE-----------GTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred HHhCC-----------CeEEEEeCCHHHHHhhcceEEEEcC
Confidence 87642 2789999998777766777666654
No 386
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.29 E-value=1.2e-10 Score=101.28 Aligned_cols=174 Identities=24% Similarity=0.296 Sum_probs=120.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCccccee--eecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV--SHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i--~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
.|+.+.++||||+||.||+......+........ ...||+...... .....+...|..+..++-|.-.+...+.+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~E---dH~avs~~eF~~~a~~g~FAlsWqAhGL~ 80 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGE---DHDALSEAEFNTRAGQGAFALSWQAHGLS 80 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcc---cccccCHHHHHHHhhcCceeEEehhcCcc
Confidence 5899999999999999999998877655432222 235665544311 23344566777776777777667778889
Q ss_pred cCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015825 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGK 289 (399)
Q Consensus 210 ~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~ 289 (399)
||.+.+ +...+..|..++......-+-..++.+.+.+.+.++.+ .++|-+|+..|+.+++++|.++|.+....-
T Consensus 81 Ygip~e-Id~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~-p~VLaqRL~~RGREs~eeI~aRL~R~a~~~---- 154 (192)
T COG3709 81 YGIPAE-IDLWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITAS-PEVLAQRLAERGRESREEILARLARAARYT---- 154 (192)
T ss_pred ccCchh-HHHHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecC-HHHHHHHHHHhccCCHHHHHHHHHhhcccc----
Confidence 999866 55567788888877655555566777776666555543 689999999999999999999998754221
Q ss_pred CCCcceEE-EeCC-CHHHHHHHHHHhhc
Q 015825 290 SSGIFDHI-LYND-KLEECYENLKKHLG 315 (399)
Q Consensus 290 ~~~~~t~V-iv~h-dleea~~~l~~ii~ 315 (399)
.+..+++ |.|. .++.+.+.+...+.
T Consensus 155 -~~~~dv~~idNsG~l~~ag~~ll~~l~ 181 (192)
T COG3709 155 -AGPGDVTTIDNSGELEDAGERLLALLH 181 (192)
T ss_pred -cCCCCeEEEcCCCcHHHHHHHHHHHHH
Confidence 1122443 4443 88888877766554
No 387
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.28 E-value=6.7e-13 Score=124.32 Aligned_cols=76 Identities=8% Similarity=0.052 Sum_probs=59.3
Q ss_pred HHcCCcceeEEEEcCC--ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 239 VRASPLDAIFIFICPP--SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 239 l~~~~~~~~~ili~~P--~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
..+++...+.+++.+| ++++||||++++|+.+...+.+.+.++.++ ..++++++|+++++ ..+++++.+
T Consensus 141 G~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~--------g~tii~itH~~~~~-~~~d~i~~l 211 (226)
T cd03270 141 GEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDL--------GNTVLVVEHDEDTI-RAADHVIDI 211 (226)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhC--------CCEEEEEEeCHHHH-HhCCEEEEe
Confidence 3455566666788877 599999999999999999999998876421 23889999999875 689999988
Q ss_pred ------cCCeeee
Q 015825 317 ------DGSIATN 323 (399)
Q Consensus 317 ------~~~~~~~ 323 (399)
.+|+++.
T Consensus 212 ~~~~~~~~G~iv~ 224 (226)
T cd03270 212 GPGAGVHGGEIVA 224 (226)
T ss_pred CCCccccCCEEEe
Confidence 5565554
No 388
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.25 E-value=3.6e-11 Score=106.10 Aligned_cols=114 Identities=27% Similarity=0.257 Sum_probs=74.8
Q ss_pred HHHHHHhCCeEEEeccC-cc-------CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee-------ecCCCcccc
Q 015825 111 REQKKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-------HTTRAPRAM 175 (399)
Q Consensus 111 ~~l~~~~g~~v~~~s~~-~~-------~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~-------~ttr~~~~~ 175 (399)
.+..+++||+++.+|.. .. .+++++++|+||||||||||+|.|.+.....++ .++ |||+..+..
T Consensus 5 ~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~-~is~~~~rGkHTTt~~~l~ 83 (161)
T PF03193_consen 5 LEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPEAKQKTG-EISEKTGRGKHTTTHRELF 83 (161)
T ss_dssp HHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS----S---------------SEEEE
T ss_pred HHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhcchhhh-hhhcccCCCcccCCCeeEE
Confidence 34568899999999976 22 247899999999999999999999998766555 443 888888877
Q ss_pred ccCCeeEEecChHH-----H--HHHHhhhhhHHHHHHhccc-------cCCcHHHHHHHHHcCC
Q 015825 176 EKDGVHYHFTERSV-----M--EKAIKDGKFLEFASVHGNL-------YGTSVEAVEAVADAGK 225 (399)
Q Consensus 176 ~~~~i~yvfq~~~l-----f--~~~~~~~~~~E~~~~~~~~-------~g~~~~~i~~~~~~g~ 225 (399)
.....+++..+|.+ . ........|.|+..+...| ...+.|.+++++++|.
T Consensus 84 ~l~~g~~iIDTPGf~~~~l~~~~~~~l~~~F~e~~~~~~~CkF~~C~H~~Ep~CaV~~av~~g~ 147 (161)
T PF03193_consen 84 PLPDGGYIIDTPGFRSFGLWHIDPEELAQYFPEFRPLAGQCKFRDCTHIHEPGCAVKAAVENGE 147 (161)
T ss_dssp EETTSEEEECSHHHHT--GCCS-HHHHHHCSGGGHHHTTHSSSTTTTSSSSTT-HHHHHHHTTS
T ss_pred ecCCCcEEEECCCCCccccccCCHHHHHHHHHHhccccCCCCccCCCCCCCCCChHHHHHHCCC
Confidence 77556788666543 1 1112233677777776655 4577899999998875
No 389
>PRK08356 hypothetical protein; Provisional
Probab=99.19 E-value=6.4e-10 Score=101.74 Aligned_cols=176 Identities=19% Similarity=0.225 Sum_probs=105.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g 211 (399)
...+++|+||+||||||+.+.|.. .. +. .++++++..+..+..+..|.|.+...|..+.....++++..+.++.||
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~-~g--~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG 79 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE-KG--FC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYG 79 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH-CC--Cc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcC
Confidence 346789999999999999999953 21 22 555666555555555567888876666665556688999999888898
Q ss_pred CcH--HHHHHHHHcCCceEEec--chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC------cHHHHHHHHHHH
Q 015825 212 TSV--EAVEAVADAGKRCILDI--DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE------TEDQILKRLRNA 281 (399)
Q Consensus 212 ~~~--~~i~~~~~~g~~~vldl--d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~------~~e~i~~~L~~~ 281 (399)
.+. ..+.+.+.....+++|. .+.....++. ....++++..| ..++-+|+.+|+.. +.+++.++.. .
T Consensus 80 ~~~~~~~~~~~~~~~~~ividG~r~~~q~~~l~~--~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~-~ 155 (195)
T PRK08356 80 EDILIRLAVDKKRNCKNIAIDGVRSRGEVEAIKR--MGGKVIYVEAK-PEIRFERLRRRGAEKDKGIKSFEDFLKFDE-W 155 (195)
T ss_pred cHHHHHHHHHHhccCCeEEEcCcCCHHHHHHHHh--cCCEEEEEECC-HHHHHHHHHhcCCccccccccHHHHHHHHH-H
Confidence 752 11222222223334442 1111112222 12344555544 68889999988755 4444433332 1
Q ss_pred HHHH-HhccCCCcceEEEeC-CCHHHHHHHHHHhhc
Q 015825 282 KEEI-KQGKSSGIFDHILYN-DKLEECYENLKKHLG 315 (399)
Q Consensus 282 ~~~l-~~~~~~~~~t~Viv~-hdleea~~~l~~ii~ 315 (399)
+..+ ...+....+|++|+| .+++++...+.+++.
T Consensus 156 ~~~l~~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~ 191 (195)
T PRK08356 156 EEKLYHTTKLKDKADFVIVNEGTLEELRKKVEEILR 191 (195)
T ss_pred HHHhhhhhhHHHhCcEEEECCCCHHHHHHHHHHHHH
Confidence 1111 111123468999998 599999999988764
No 390
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.19 E-value=3.2e-11 Score=132.91 Aligned_cols=186 Identities=15% Similarity=0.102 Sum_probs=122.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCC--cccceeeecCCCcc-ccccCCeeEEecChHHHHHHHhhhhhHHHHHHh
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPS--MFGFSVSHTTRAPR-AMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH 206 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~--~~g~~i~~ttr~~~-~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~ 206 (399)
..+|..++|+|+||||||||++.|+|.... .+| ++....++.. ..-.+-.||+-|+.-..+.. |+.|-+.|.
T Consensus 814 ~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~G-di~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~----TVrESL~fS 888 (1391)
T KOG0065|consen 814 FKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEG-DILISGFPKDQETFARVSGYVEQQDIHSPEL----TVRESLRFS 888 (1391)
T ss_pred ecCCceeehhcCCCCchHHHHHHHhcCcccceEEe-EEEECCeeCchhhhccccceeecccccCccc----chHHHHHHH
Confidence 458999999999999999999999997432 344 4444444333 22234479998886555665 888988887
Q ss_pred cccc---CCcHHHHHHHHHc-----CC----ceEEecchhhHHHHHcCCcceeEEEEcCC-ChHHHHHHHHhCCCCcHHH
Q 015825 207 GNLY---GTSVEAVEAVADA-----GK----RCILDIDVQGARSVRASPLDAIFIFICPP-SMEELEERLRARGTETEDQ 273 (399)
Q Consensus 207 ~~~~---g~~~~~i~~~~~~-----g~----~~vldld~~g~~~l~~~~~~~~~ili~~P-~lllLDEpl~~lD~~~~e~ 273 (399)
..++ ..+.++..+-+++ ++ ..++...-.|+.--++.++...+=|+.+| .++.||||+++||..+...
T Consensus 889 A~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~ 968 (1391)
T KOG0065|consen 889 AALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAI 968 (1391)
T ss_pred HHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHH
Confidence 7654 2222222222221 11 11111111233333567777888899999 8899999999999999889
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhccc-CCeeeecCCCc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLGLD-GSIATNHQTSP 328 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~~~-~~~~~~~~~~~ 328 (399)
+.+.++++... ++ +++..-| .-...++.-|+++.+. +|+.+..|+..
T Consensus 969 i~~~lrkla~t-Gq-------tIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 969 VMRFLRKLADT-GQ-------TILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred HHHHHHHHHhc-CC-------eEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 99999887642 11 6776667 4445667788888776 55777666543
No 391
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.17 E-value=4.2e-11 Score=105.65 Aligned_cols=192 Identities=12% Similarity=0.134 Sum_probs=112.2
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccc----cCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAME----KDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~----~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
+...|+++=++||||||||||+-.++|+.+. .| +|.....+....+ .+..+|..|.......| -+..++.
T Consensus 21 qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~-sG-si~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~m----pV~~YL~ 94 (248)
T COG4138 21 EVRAGEILHLVGPNGAGKSTLLARMAGMTSG-SG-SIQFAGQPLEAWSATELARHRAYLSQQQTPPFAM----PVWHYLT 94 (248)
T ss_pred ccccceEEEEECCCCccHHHHHHHHhCCCCC-Cc-eEEECCcchhHHhHhHHHHHHHHHhhccCCcchh----hhhhhhh
Confidence 3458999999999999999999999999864 55 4443222211110 01134554442211111 2222222
Q ss_pred HhccccCCcHHHHHHHHHcCCceEEecchhhHHHHH---c---CCcceeEEEE-cCC------ChHHHHHHHHhCCCCcH
Q 015825 205 VHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVR---A---SPLDAIFIFI-CPP------SMEELEERLRARGTETE 271 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~---~---~~~~~~~ili-~~P------~lllLDEpl~~lD~~~~ 271 (399)
+. .+...+...++.-. -.+.++.+--+.+. . +++..+.+++ ..| .++++|||.+.+|...+
T Consensus 95 L~-----qP~~~~a~~i~~i~-~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~ 168 (248)
T COG4138 95 LH-----QPDKTRTELLNDVA-GALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQ 168 (248)
T ss_pred hc-----CchHHHHHHHHHHH-hhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHH
Confidence 21 12222222222100 01112222222221 1 2233333332 233 36799999999997666
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
..+.+.+.++.. ...++|+.+||+..++..++++..+..|.....|+.+++++.+....++
T Consensus 169 ~aLdrll~~~c~--------~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~q~f 229 (248)
T COG4138 169 SALDRLLSALCQ--------QGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAY 229 (248)
T ss_pred HHHHHHHHHHHh--------CCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChHHHHHHh
Confidence 666555555442 3458999999999999999999999999999999988888877555444
No 392
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.17 E-value=1.7e-12 Score=119.79 Aligned_cols=163 Identities=17% Similarity=0.135 Sum_probs=90.5
Q ss_pred EEEEEcCCCCCHHHHHhhhh----hccCCcccceeeecCCCcc-ccccCCeeEEecChHHHHHHHhh--hhhHHHHHHhc
Q 015825 135 PVVITGPSGVGKGTLISMLM----KEFPSMFGFSVSHTTRAPR-AMEKDGVHYHFTERSVMEKAIKD--GKFLEFASVHG 207 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~----~~~~~~~g~~i~~ttr~~~-~~~~~~i~yvfq~~~lf~~~~~~--~~~~E~~~~~~ 207 (399)
+++|+||||+|||||+++|. |..++..+ .+.+...... ......++++|++.. ...+... -++.+++.+
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~-~~~~~~~~i~~~~~~~~v~~~f~~~~-~~~~~v~r~~~~~~~~~~-- 99 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSK-GGAHDPKLIREGEVRAQVKLAFENAN-GKKYTITRSLAILENVIF-- 99 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccc-cccchHHHHhCCCCcEEEEEEEEeCC-CCEEEEEEEhhHhhceee--
Confidence 99999999999999999995 66655443 1111111000 111224778888752 1111000 033333322
Q ss_pred cccCCcHHHHHHHHHcCCceEEecchhhHHH-HH-cCCcceeEEEEcCCChHHHHHHHHhCCCCcHH-HHHHHHHHHHHH
Q 015825 208 NLYGTSVEAVEAVADAGKRCILDIDVQGARS-VR-ASPLDAIFIFICPPSMEELEERLRARGTETED-QILKRLRNAKEE 284 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~g~~~vldld~~g~~~-l~-~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e-~i~~~L~~~~~~ 284 (399)
.+...+...+..... .+.. |.++ +. ..+...+.+++.+|++.++|||++++|+...+ .+.+.+.++.++
T Consensus 100 ----~~~~~~~~~~~~~~~---~LS~-G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~ 171 (204)
T cd03240 100 ----CHQGESNWPLLDMRG---RCSG-GEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQ 171 (204)
T ss_pred ----echHHHHHHHhcCcc---ccCc-cHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhc
Confidence 122333333322110 1100 1110 00 00123334778899999999999999999888 888888876432
Q ss_pred HHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 285 IKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
. ..++++++|+++.. ..+++++.+.
T Consensus 172 ~-------~~~iiiitH~~~~~-~~~d~i~~l~ 196 (204)
T cd03240 172 K-------NFQLIVITHDEELV-DAADHIYRVE 196 (204)
T ss_pred c-------CCEEEEEEecHHHH-hhCCEEEEEe
Confidence 1 23788999998754 5677766654
No 393
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.14 E-value=7.7e-12 Score=119.37 Aligned_cols=77 Identities=12% Similarity=0.064 Sum_probs=59.4
Q ss_pred cCCcceeEEEEcC---CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc-
Q 015825 241 ASPLDAIFIFICP---PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL- 316 (399)
Q Consensus 241 ~~~~~~~~ili~~---P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~- 316 (399)
+++...+.+++.+ |++.+||||++++|+...+.+.+.+.++.++ ..++++++|+++.+ ..+++++.+
T Consensus 175 ~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~--------g~tvIiitH~~~~i-~~aD~ii~Lg 245 (261)
T cd03271 175 AQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK--------GNTVVVIEHNLDVI-KCADWIIDLG 245 (261)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC--------CCEEEEEeCCHHHH-HhCCEEEEec
Confidence 4444455566664 7899999999999999999998888876432 23889999999876 468998888
Q ss_pred -----cCCeeeecCC
Q 015825 317 -----DGSIATNHQT 326 (399)
Q Consensus 317 -----~~~~~~~~~~ 326 (399)
.+|+++..++
T Consensus 246 p~~g~~~G~iv~~Gt 260 (261)
T cd03271 246 PEGGDGGGQVVASGT 260 (261)
T ss_pred CCcCCCCCEEEEeCC
Confidence 6777777665
No 394
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.13 E-value=1.7e-12 Score=120.45 Aligned_cols=59 Identities=8% Similarity=-0.103 Sum_probs=48.1
Q ss_pred CCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 253 ~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
+|+++++|||++++|+.+.+.+.+.+.++.++ ..++++++|+++.+...+++++.+.+|
T Consensus 151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~--------~~tii~itH~~~~~~~~~~~i~~~~~~ 209 (213)
T cd03279 151 RLEALFIDEGFGTLDPEALEAVATALELIRTE--------NRMVGVISHVEELKERIPQRLEVIKTP 209 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--------CCEEEEEECchHHHHhhCcEEEEEecC
Confidence 57899999999999999999998888876432 238899999998888777777776655
No 395
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.10 E-value=1.1e-12 Score=112.39 Aligned_cols=121 Identities=19% Similarity=0.160 Sum_probs=73.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
..+|++++|+||||||||||+++|+|..++..| .+....... .......++|++++..+++.+ ++.++.
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G-~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----tv~~~~-- 80 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSG-SILINGKDISDIDIEELRRRIGYVPQDPQLFPGL----TVRENE-- 80 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHESEE-EEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTS----BHHHHH--
T ss_pred EcCCCEEEEEccCCCccccceeeeccccccccc-cccccccccccccccccccccccccccccccccc----cccccc--
Confidence 458999999999999999999999999999888 554322111 122334689999997666554 444441
Q ss_pred hccccCCcHHHHHHHHHcC-----CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEAVADAG-----KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~g-----~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
....+...++.- ....++-....+....+++...+.+++.+|++.+||||++
T Consensus 81 -------~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 -------SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 111122222110 0111111112222233445555668888999999999974
No 396
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.09 E-value=2.1e-11 Score=136.79 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=134.3
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecC---CCccc-cccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT---RAPRA-MEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~tt---r~~~~-~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
...+|+.+|++|..|||||||+++|-++..+..| .|.... ..... ..+..++.+||+|.+|. ||+..|+.
T Consensus 1162 ~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G-~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-----GTvR~NLD 1235 (1381)
T KOG0054|consen 1162 TIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEG-EILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-----GTVRFNLD 1235 (1381)
T ss_pred EEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCC-eEEEcCeecccccHHHHHhcCeeeCCCCceec-----CccccccC
Confidence 3458999999999999999999999999999888 554322 12111 12345899999998774 36666654
Q ss_pred HhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 205 VHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
-...+ +.+++-++++. ++...+.-.-......++|-+..+.+++...++++|||.|++.|+.|..
T Consensus 1236 Pf~e~---sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~ 1312 (1381)
T KOG0054|consen 1236 PFDEY---SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 1312 (1381)
T ss_pred ccccc---CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHH
Confidence 33322 33334333332 1111110000112223455566667999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcc
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~ 336 (399)
-||+.|++. + +.||++-+-|.+..++ .+|+++++++|+++..++|.+++..+..
T Consensus 1313 lIQ~tIR~~---F------~dcTVltIAHRl~TVm-d~DrVlVld~G~v~EfdsP~~Ll~~~~S 1366 (1381)
T KOG0054|consen 1313 LIQKTIREE---F------KDCTVLTIAHRLNTVM-DSDRVLVLDAGRVVEFDSPAELLSDKDS 1366 (1381)
T ss_pred HHHHHHHHH---h------cCCeEEEEeeccchhh-hcCeEEEeeCCeEeecCChHHHHhCCcc
Confidence 999999872 2 4689999999987766 6999999999999999999999987653
No 397
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.08 E-value=4.5e-12 Score=119.56 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=46.5
Q ss_pred CCcceeEEEE----cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 242 SPLDAIFIFI----CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 242 ~~~~~~~ili----~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
++...+.+++ .+|+++++|||++++|+.+.+.+.+.+.++.+ ..++++++|.. ++...+++++.+.
T Consensus 165 ~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~---------~~~ii~~~h~~-~~~~~~d~i~~l~ 234 (243)
T cd03272 165 SLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD---------GAQFITTTFRP-ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC---------CCEEEEEecCH-HHHhhCCEEEEEE
Confidence 3444444553 46889999999999999999999888877532 12556667764 5677788876654
No 398
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.07 E-value=3.8e-12 Score=120.99 Aligned_cols=173 Identities=15% Similarity=0.110 Sum_probs=94.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCC-C-----cc-ccccCCeeEEecChHH---------HHHHH
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR-A-----PR-AMEKDGVHYHFTERSV---------MEKAI 194 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr-~-----~~-~~~~~~i~yvfq~~~l---------f~~~~ 194 (399)
+...+.+|+||||||||||+++|++.+.+..+..+..... . .. ......++++||++.. .+.+
T Consensus 23 ~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~l- 101 (251)
T cd03273 23 FDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEI- 101 (251)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceE-
Confidence 4577999999999999999999999886543322221111 0 00 1112247888987421 1222
Q ss_pred hhhhhHHHHHHhc--cc-c-C--CcHHHHHHHHHcC-Cc----eEE----------------ecchhhHHHHHcCCccee
Q 015825 195 KDGKFLEFASVHG--NL-Y-G--TSVEAVEAVADAG-KR----CIL----------------DIDVQGARSVRASPLDAI 247 (399)
Q Consensus 195 ~~~~~~E~~~~~~--~~-~-g--~~~~~i~~~~~~g-~~----~vl----------------dld~~g~~~l~~~~~~~~ 247 (399)
++.+.+.+.. .. + + .....+.+.++.- .. .++ +..+..+....+++...+
T Consensus 102 ---tV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la 178 (251)
T cd03273 102 ---TVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALS 178 (251)
T ss_pred ---EEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHH
Confidence 2222221111 01 1 1 1223444444331 11 000 000001111122223333
Q ss_pred EEEE----cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 248 FIFI----CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 248 ~ili----~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
.+++ .+|++.++|||++++|+...+.+.+.++++.+ ..++|+++|+ .+.++.+++++...
T Consensus 179 ~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~---------g~~ii~iSH~-~~~~~~~d~v~~~~ 242 (251)
T cd03273 179 LILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK---------GSQFIVVSLK-EGMFNNANVLFRTR 242 (251)
T ss_pred HHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC---------CCEEEEEECC-HHHHHhCCEEEEEE
Confidence 3333 57799999999999999988888888877531 2378999999 57777788766543
No 399
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.07 E-value=6e-11 Score=133.11 Aligned_cols=176 Identities=17% Similarity=0.181 Sum_probs=124.1
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
...+|+.++++||-|||||+|+.+|.|..+...| .+.... .++|++|.+..+ ++++.||+.|+..
T Consensus 543 ~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG-~v~v~g---------siaYv~Q~pWI~-----ngTvreNILFG~~ 607 (1381)
T KOG0054|consen 543 EIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSG-SVAVNG---------SVAYVPQQPWIQ-----NGTVRENILFGSP 607 (1381)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcCcccccc-eEEEcC---------eEEEeccccHhh-----CCcHHHhhhcCcc
Confidence 3468999999999999999999999999999888 443211 279999997544 4589999987643
Q ss_pred ccCCcHHHHHHHHHc------------CCceEEecchhh--HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 209 LYGTSVEAVEAVADA------------GKRCILDIDVQG--ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 209 ~~g~~~~~i~~~~~~------------g~~~vldld~~g--~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
+ ..+.+++.++. |....+ .-.| +...++++...+.++..+.++-+||+|+++.|......+
T Consensus 608 ~---d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeI--GErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~i 682 (1381)
T KOG0054|consen 608 Y---DEERYDKVIKACALKKDLEILPFGDLTEI--GERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHI 682 (1381)
T ss_pred c---cHHHHHHHHHHccCHhHHhhcCCCCccee--cCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHH
Confidence 2 33444444432 111111 0011 122356667777788899999999999999998776555
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
.+..-. ..+. .-|+|++||. -+-+..++.++.+++|++.+.|+..++...
T Consensus 683 f~~ci~--~~L~------~KT~ILVTHq-l~~L~~ad~Iivl~~G~I~~~Gty~el~~~ 732 (1381)
T KOG0054|consen 683 FEECIR--GLLR------GKTVILVTHQ-LQFLPHADQIIVLKDGKIVESGTYEELLKS 732 (1381)
T ss_pred HHHHHH--hhhc------CCEEEEEeCc-hhhhhhCCEEEEecCCeEecccCHHHHHhc
Confidence 444331 1121 1289999994 467788999999999999999998887744
No 400
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.06 E-value=9.2e-11 Score=106.24 Aligned_cols=205 Identities=14% Similarity=0.110 Sum_probs=128.3
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccc--------eee---ecCCCccccccCCeeEEecChHH-H-HHHHh
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF--------SVS---HTTRAPRAMEKDGVHYHFTERSV-M-EKAIK 195 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~--------~i~---~ttr~~~~~~~~~i~yvfq~~~l-f-~~~~~ 195 (399)
....|++-+|+|.||||||-+.+.|++.....+-. ++- .+.+..+..--..++++||++.. . +....
T Consensus 29 tlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~i 108 (330)
T COG4170 29 TLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERV 108 (330)
T ss_pred eeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHH
Confidence 34589999999999999999999999987642110 111 12222222222357899998642 1 11111
Q ss_pred hhhhHHH---HHHhccc---cCCcHHHHHHHHHc-CCceEEec---chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 196 DGKFLEF---ASVHGNL---YGTSVEAVEAVADA-GKRCILDI---DVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 196 ~~~~~E~---~~~~~~~---~g~~~~~i~~~~~~-g~~~vldl---d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
..+.+++ ..|.++. ++..+...-+.+.+ |...--|+ -|..+.....|++..+.+++..|.+++.|||+++
T Consensus 109 G~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~ 188 (330)
T COG4170 109 GRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNS 188 (330)
T ss_pred HHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcc
Confidence 1133333 3444443 33333333333322 11110000 0111111124455666788999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
.++.++.++.+.|.++.+. ...+++++.||+...-+.++++-++.-|..+.....++++..|......
T Consensus 189 ~e~~Tq~QifRLLs~mNQn-------~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~PhHPYTq 256 (330)
T COG4170 189 MEPTTQAQIFRLLSRLNQN-------SNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMPHHPYTQ 256 (330)
T ss_pred cCccHHHHHHHHHHHhhcc-------CCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcCCCCchHH
Confidence 9999999999998886543 2447779999999999999999999988777777677788877655433
No 401
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.01 E-value=1.2e-12 Score=121.33 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=44.2
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
.+|+++++|||++++|+.+...+++.++++.. ..++++++|+ +++...+++++.+.
T Consensus 148 ~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~---------~~~~iivs~~-~~~~~~~d~v~~~~ 203 (212)
T cd03274 148 KPTPLYVMDEIDAALDFRNVSIVANYIKERTK---------NAQFIVISLR-NNMFELADRLVGIY 203 (212)
T ss_pred CCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC---------CCEEEEEECc-HHHHHhCCEEEEEE
Confidence 36789999999999999999999888887531 2377888898 46667788877665
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.00 E-value=1.4e-10 Score=106.55 Aligned_cols=128 Identities=13% Similarity=0.135 Sum_probs=74.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC-cccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS-MFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
..|++++|+||||||||||+++|.+.... ..|..+.. ..++||...+|..+ +..+++......
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a------------~~~~~q~~~l~~~~----~~~d~l~~~~s~ 86 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCA------------SSFELPPVKIFTSI----RVSDDLRDGISY 86 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEec------------CccCcccceEEEec----cchhccccccCh
Confidence 35799999999999999999999875421 23322221 12444533344443 444544332211
Q ss_pred cCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHH-HHHHHHHHHHhc
Q 015825 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK-RLRNAKEEIKQG 288 (399)
Q Consensus 210 ~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~-~L~~~~~~l~~~ 288 (399)
+......+.+.++. + . ...|++.++|||++++|+.....+.. .+..+.+
T Consensus 87 ~~~e~~~~~~iL~~---------------~---~-------~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~----- 136 (199)
T cd03283 87 FYAELRRLKEIVEK---------------A---K-------KGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN----- 136 (199)
T ss_pred HHHHHHHHHHHHHh---------------c---c-------CCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-----
Confidence 10000111111110 0 0 16788999999999999887765543 4554431
Q ss_pred cCCCcceEEEeCCCHHHHH
Q 015825 289 KSSGIFDHILYNDKLEECY 307 (399)
Q Consensus 289 ~~~~~~t~Viv~hdleea~ 307 (399)
...++++++|+++.+.
T Consensus 137 ---~~~tiiivTH~~~~~~ 152 (199)
T cd03283 137 ---KNTIGIISTHDLELAD 152 (199)
T ss_pred ---CCCEEEEEcCcHHHHH
Confidence 1347889999988764
No 403
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.97 E-value=2.6e-10 Score=115.62 Aligned_cols=167 Identities=14% Similarity=0.174 Sum_probs=95.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
..+..++++||||||||||++.+.+.+.|..|....|.-.. ++++-|+... .+....+..||.. ..+
T Consensus 414 d~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~--------~~~y~Qh~~e--~ldl~~s~le~~~---~~~ 480 (614)
T KOG0927|consen 414 DLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK--------LPRYNQHLAE--QLDLDKSSLEFMM---PKF 480 (614)
T ss_pred CcccceeEecCCCCchhhhHHHHhhcccccccccccccccc--------chhhhhhhHh--hcCcchhHHHHHH---Hhc
Confidence 46788999999999999999999999999999544442211 2232232211 0001112333321 111
Q ss_pred C--CcHHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 015825 211 G--TSVEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK 286 (399)
Q Consensus 211 g--~~~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~ 286 (399)
. ...+.++.++.+ |+. ...+.....+....+.++..+...+..|.+++|||||+++|.++.+.+.+.|.++.
T Consensus 481 ~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~---- 556 (614)
T KOG0927|consen 481 PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP---- 556 (614)
T ss_pred cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC----
Confidence 1 334444444432 111 00001111111122333344446677899999999999999988777766666531
Q ss_pred hccCCCcceEEEeCCCHHHHHHHHHHhhcccCCee
Q 015825 287 QGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIA 321 (399)
Q Consensus 287 ~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~ 321 (399)
-.+|+++||.--.-+.++++..-.++.+
T Consensus 557 -------Ggvv~vSHDfrlI~qVaeEi~~c~~~~~ 584 (614)
T KOG0927|consen 557 -------GGVVLVSHDFRLISQVAEEIWVCENGTV 584 (614)
T ss_pred -------CceeeeechhhHHHHHHHHhHhhccCce
Confidence 1678999988766666677665555433
No 404
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.94 E-value=2.2e-10 Score=116.09 Aligned_cols=72 Identities=10% Similarity=-0.045 Sum_probs=57.4
Q ss_pred CcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 243 PLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 243 ~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
+...+.+|+..|++++||||+++||.++...+.+.|.++. ..+.|++.|+.+..-..|.+|+.+.....+
T Consensus 229 R~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d----------~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~ 298 (614)
T KOG0927|consen 229 RAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD----------RIILVIVSHSQDFLNGVCTNIIHLDNKKLI 298 (614)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc----------CceEEEEecchhhhhhHhhhhheeccccee
Confidence 3445568999999999999999999988777777776632 116789999999998999999999877655
Q ss_pred ec
Q 015825 323 NH 324 (399)
Q Consensus 323 ~~ 324 (399)
..
T Consensus 299 ~y 300 (614)
T KOG0927|consen 299 YY 300 (614)
T ss_pred ee
Confidence 43
No 405
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.4e-10 Score=116.86 Aligned_cols=66 Identities=9% Similarity=-0.003 Sum_probs=46.5
Q ss_pred HcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 240 RASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 240 ~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
++.++..+.++++.|++++||||++.||..+...+...|... ..|.++|+||-.-.=..+..||-.
T Consensus 203 WrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~-----------~~T~liVSHDr~FLn~V~tdIIH~ 268 (582)
T KOG0062|consen 203 WRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW-----------KITSLIVSHDRNFLNTVCTDIIHL 268 (582)
T ss_pred hhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC-----------CceEEEEeccHHHHHHHHHHHHHH
Confidence 344556667999999999999999999987776666666552 238899999854433334444433
No 406
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.87 E-value=1.8e-10 Score=105.68 Aligned_cols=61 Identities=7% Similarity=-0.072 Sum_probs=46.2
Q ss_pred EcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 251 ICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 251 i~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
+.+|++.++|||++++|..+...+.+.|.++..+- .+..++++++|+++++... +++.++.
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~-----~~~~~iii~th~~~~i~~~-d~v~~~~ 189 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQ-----PGRQFIFITPQDISGLASS-DDVKVFR 189 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcC-----CCcEEEEEECCcccccccc-cceeEEE
Confidence 57999999999999999999989988888753210 0224678899999888754 6655554
No 407
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.87 E-value=4.6e-10 Score=110.10 Aligned_cols=174 Identities=12% Similarity=0.127 Sum_probs=105.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccc----cCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAME----KDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~----~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
..+|+++.++|.|||||||+++.|.|++.|..| .|.....+..... +.-.+-+|.++.+|+.+.....
T Consensus 346 ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG-~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~------- 417 (546)
T COG4615 346 IKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSG-EILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG------- 417 (546)
T ss_pred EecCcEEEEECCCCCcHHHHHHHHhcccCCCCC-ceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc-------
Confidence 459999999999999999999999999999999 6655444332211 1112334555555554421111
Q ss_pred hccccCCcHHHHHHHHHc----CCceEEec--chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEAVADA----GKRCILDI--DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~----g~~~vldl--d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
. -+...+...++. .+..+.|- .+-.....++.+...+.+++-+-++.++||=-...||.-+..+.+.+-
T Consensus 418 ----~-as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lL 492 (546)
T COG4615 418 ----K-ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLL 492 (546)
T ss_pred ----C-CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHh
Confidence 0 111112111110 11111111 010111223344455567777778899999988899888888877766
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeec
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNH 324 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~ 324 (399)
-.-++++. |++.++|| |.=+..+||++.+.+|+++..
T Consensus 493 p~LK~qGK-------TI~aIsHD-d~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 493 PLLKEQGK-------TIFAISHD-DHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHhCC-------eEEEEecC-chhhhhHHHHHHHhcCceeec
Confidence 55555443 88889997 234556899999999987753
No 408
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.82 E-value=1.1e-10 Score=110.66 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 253 ~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
+|++.++|||++++|+.....+.+.+.++.++ ..++++++|+. +.+..+++++.+.+
T Consensus 177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~--------g~~vi~isH~~-~~~~~~d~i~~~~~ 233 (247)
T cd03275 177 PAPFFVLDEVDAALDNTNVGKVASYIREQAGP--------NFQFIVISLKE-EFFSKADALVGVYR 233 (247)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhccC--------CcEEEEEECCH-HHHhhCCeEEEEEe
Confidence 58899999999999999988888888875421 34789999995 45677888777764
No 409
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.79 E-value=9.5e-10 Score=112.43 Aligned_cols=183 Identities=16% Similarity=0.148 Sum_probs=121.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCC-----CccccccCCeeEEecChH---HHHHHHhhhhhHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR-----APRAMEKDGVHYHFTERS---VMEKAIKDGKFLE 201 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr-----~~~~~~~~~i~yvfq~~~---lf~~~~~~~~~~E 201 (399)
..+|++++|.|--|+|+|-+++.|.|..++..| .+....+ .++..-..+++|++.+.. ++..+ .+.+
T Consensus 282 vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G-~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~----sI~~ 356 (500)
T COG1129 282 VRAGEILGIAGLVGAGRTELARALFGARPASSG-EILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM----SIAE 356 (500)
T ss_pred EeCCcEEEEeccccCCHHHHHHHHhCCCcCCCc-eEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC----cHHH
Confidence 459999999999999999999999998887777 5554322 233333457899987742 33332 4555
Q ss_pred HHHHhc--ccc---CCcHHHHHHHHHcCCceEEec---ch-hhHHH---HHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHG--NLY---GTSVEAVEAVADAGKRCILDI---DV-QGARS---VRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~--~~~---g~~~~~i~~~~~~g~~~vldl---d~-~g~~~---l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
|+.+.. ... -......++..++. ..-+.+ ++ +.... ..+|+.-....+..+|++++|||||++.|.-
T Consensus 357 Ni~l~~l~~~~~~~~i~~~~e~~~~~~~-~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVG 435 (500)
T COG1129 357 NITLASLRRFSRRGLIDRRKERALAERY-IRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVG 435 (500)
T ss_pred heehHhhhhhccccccChHHHHHHHHHH-HHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccc
Confidence 554431 100 11111111111110 000111 00 11111 1244555555788899999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQT 326 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~ 326 (399)
...+|.+.++++.++ ...+++++.+++|.+..+||+++|.+|+++..-.
T Consensus 436 AK~eIy~li~~lA~~--------G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 436 AKAEIYRLIRELAAE--------GKAILMISSELPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred hHHHHHHHHHHHHHC--------CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence 999999999987754 3378999999999999999999999998887533
No 410
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.7e-09 Score=107.14 Aligned_cols=143 Identities=15% Similarity=0.233 Sum_probs=85.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g 211 (399)
-...++|+||||+|||||+++|.|.+.|..| .... ..+-.+|+.-|+... ++....+-.|++ .+.+.
T Consensus 612 mdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~G-E~RK-------nhrL~iG~FdQh~~E--~L~~Eetp~EyL---qr~FN 678 (807)
T KOG0066|consen 612 MDSRIAIVGPNGVGKSTLLKLLIGKLDPNDG-ELRK-------NHRLRIGWFDQHANE--ALNGEETPVEYL---QRKFN 678 (807)
T ss_pred ccceeEEECCCCccHHHHHHHHhcCCCCCcc-hhhc-------cceeeeechhhhhHH--hhccccCHHHHH---HHhcC
Confidence 3467899999999999999999999998887 3321 111126666555432 222222444443 33455
Q ss_pred CcHHHHHHHHHc-CC------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 015825 212 TSVEAVEAVADA-GK------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284 (399)
Q Consensus 212 ~~~~~i~~~~~~-g~------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~ 284 (399)
.+....+..+-. |+ ..+.++ .|-+. .++..+-.-+..|++++||||++++|.++...+.+.|.++.
T Consensus 679 lpyq~ARK~LG~fGL~sHAHTikikdL--SGGQK---aRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~-- 751 (807)
T KOG0066|consen 679 LPYQEARKQLGTFGLASHAHTIKIKDL--SGGQK---ARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN-- 751 (807)
T ss_pred CChHHHHHHhhhhhhhhccceEeeeec--CCcch---HHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc--
Confidence 555555544321 11 112222 22221 11222223456799999999999999988777777776542
Q ss_pred HHhccCCCcceEEEeCCCH
Q 015825 285 IKQGKSSGIFDHILYNDKL 303 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdl 303 (399)
-.+|+|+||.
T Consensus 752 ---------GgVi~VsHDe 761 (807)
T KOG0066|consen 752 ---------GGVIMVSHDE 761 (807)
T ss_pred ---------CcEEEEeccc
Confidence 1578999985
No 411
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.75 E-value=4.3e-09 Score=109.70 Aligned_cols=153 Identities=22% Similarity=0.195 Sum_probs=101.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
....+|+.+.+.||||||||||+++|+|+-|--.| .+.. + .....-|++|.+- +..|+..|.+.|..
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G-~I~~---P----~~~~~lflpQ~PY-----~p~GtLre~l~YP~ 480 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSG-RISM---P----ADSALLFLPQRPY-----LPQGTLREALCYPN 480 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCC-ceec---C----CCCceEEecCCCC-----CCCccHHHHHhCCC
Confidence 34568999999999999999999999999987666 3221 1 1122568888763 34458888888876
Q ss_pred cccCCcHHHHHHHHHc-CCceE---Ee-cchh--hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 208 NLYGTSVEAVEAVADA-GKRCI---LD-IDVQ--GARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~-g~~~v---ld-ld~~--g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
.....+.+++.+.+.+ ++..+ ++ .+.. -+....+|++..+.++++.|++.+|||-|+++|+.++..+.+.+++
T Consensus 481 ~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 481 AAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred CCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence 5533555666555543 11110 00 0000 0011134555666799999999999999999999988888887776
Q ss_pred HHHHHHhccCCCcceEEEeCCC
Q 015825 281 AKEEIKQGKSSGIFDHILYNDK 302 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hd 302 (399)
++ -.+++|-|.|.
T Consensus 561 ---~l------p~~tvISV~Hr 573 (604)
T COG4178 561 ---EL------PDATVISVGHR 573 (604)
T ss_pred ---hC------CCCEEEEeccc
Confidence 22 23477778884
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.68 E-value=1.2e-08 Score=112.72 Aligned_cols=87 Identities=13% Similarity=0.068 Sum_probs=69.8
Q ss_pred HcCCcceeEEEEcCC---ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 240 RASPLDAIFIFICPP---SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 240 ~~~~~~~~~ili~~P---~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.+|+...+.+++.+| ++.+||||++++|+.+...+.+.|.++.++ ..++++++|+++.+ ..+++++.+
T Consensus 835 EkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~--------G~TVIiitH~~~~i-~~aD~ii~L 905 (943)
T PRK00349 835 EAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK--------GNTVVVIEHNLDVI-KTADWIIDL 905 (943)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC--------CCEEEEEecCHHHH-HhCCEEEEe
Confidence 344555556777887 899999999999999999999988886532 23889999999886 578999999
Q ss_pred ------cCCeeeecCCCccccCCCc
Q 015825 317 ------DGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 317 ------~~~~~~~~~~~~~~~~~p~ 335 (399)
.+|.++..+++.++...|.
T Consensus 906 gp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 906 GPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred cCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 6889998898888877664
No 413
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.68 E-value=2.7e-09 Score=106.39 Aligned_cols=166 Identities=15% Similarity=0.075 Sum_probs=95.0
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
....|++++++||||-||||++++|+|.+.|..|. ... -.++|-+|--.. ...+++.+++.-...
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~---------~~vSyKPQyI~~----~~~gtV~~~l~~~~~ 427 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EED---------LKVSYKPQYISP----DYDGTVEDLLRSAIR 427 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC--Ccc---------ceEeecceeecC----CCCCcHHHHHHHhhh
Confidence 34589999999999999999999999999998883 100 114555543110 011233333221110
Q ss_pred c-cCCcHHHHHHHHHcCC--ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 015825 209 L-YGTSVEAVEAVADAGK--RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEI 285 (399)
Q Consensus 209 ~-~g~~~~~i~~~~~~g~--~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l 285 (399)
. ++.+. .+..+-+.+ .-++|-....+....-|++..+.+|..+.++-+||||.+-||.+.+-...+.+++....-
T Consensus 428 ~~~~~s~--~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~ 505 (591)
T COG1245 428 SAFGSSY--FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENN 505 (591)
T ss_pred hhcccch--hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhc
Confidence 0 11110 000000000 001111111111112234455668888999999999999999887777777777765432
Q ss_pred HhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 286 KQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 286 ~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
..+..++.||+-..--..+++++..+
T Consensus 506 -------~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 506 -------EKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred -------CceEEEEecceehhhhhhceEEEEec
Confidence 23788999998666656677666553
No 414
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.66 E-value=6.9e-09 Score=119.71 Aligned_cols=84 Identities=12% Similarity=0.136 Sum_probs=66.9
Q ss_pred HcCCcceeEEEE---cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 240 RASPLDAIFIFI---CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 240 ~~~~~~~~~ili---~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.+++...+.+++ .+|++.+||||++++|+.+.+.+.+.|.++.++ ..++|+++|+++.+ ..+++++.+
T Consensus 814 E~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~--------G~TVIiIsHdl~~i-~~aDrVi~L 884 (1809)
T PRK00635 814 EIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ--------GHTVVIIEHNMHVV-KVADYVLEL 884 (1809)
T ss_pred HHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHH-HhCCEEEEE
Confidence 344455555665 589999999999999999999999999886532 23789999999988 789999988
Q ss_pred c------CCeeeecCCCccccC
Q 015825 317 D------GSIATNHQTSPKGID 332 (399)
Q Consensus 317 ~------~~~~~~~~~~~~~~~ 332 (399)
. +|.++..++++++..
T Consensus 885 ~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 885 GPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred ccCCCCCCCEEEEeCCHHHHHh
Confidence 5 678888888877654
No 415
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.63 E-value=2e-08 Score=92.19 Aligned_cols=63 Identities=16% Similarity=-0.020 Sum_probs=46.5
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHH-HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 252 CPPSMEELEERLRARGTETEDQILK-RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~-~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
.+|++.++|||++++|+.....+.. .++.+.+ ..+++++++|+ .+....+++++.+.+|.+..
T Consensus 107 ~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~--------~~~~vi~~tH~-~~l~~~~d~~~~l~~g~l~~ 170 (200)
T cd03280 107 DPDSLVLLDELGSGTDPVEGAALAIAILEELLE--------RGALVIATTHY-GELKAYAYKREGVENASMEF 170 (200)
T ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh--------cCCEEEEECCH-HHHHHHHhcCCCeEEEEEEE
Confidence 5788999999999999988777754 4555432 13478899998 45667788888777776654
No 416
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.62 E-value=6.7e-09 Score=95.45 Aligned_cols=63 Identities=16% Similarity=0.039 Sum_probs=41.1
Q ss_pred EcCCChHHHHHHHHhCCCCcHHHHHHH-HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 251 ICPPSMEELEERLRARGTETEDQILKR-LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 251 i~~P~lllLDEpl~~lD~~~~e~i~~~-L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
+.+|++.++|||++++|+.....+... ++.+.+ ...++++++|+.+. ...+++...+..+.+.
T Consensus 106 ~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~--------~~~~vi~~tH~~~~-~~~~~~~~~l~~~~~~ 169 (202)
T cd03243 106 ATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE--------KGCRTLFATHFHEL-ADLPEQVPGVKNLHME 169 (202)
T ss_pred ccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh--------cCCeEEEECChHHH-HHHhhcCCCeEEEEEE
Confidence 347889999999999999877766554 343321 13478899998755 4456554444444333
No 417
>PRK04040 adenylate kinase; Provisional
Probab=98.59 E-value=2.4e-06 Score=77.77 Aligned_cols=75 Identities=28% Similarity=0.326 Sum_probs=54.0
Q ss_pred HHcCCcceeEEEEcCCChHHHHHHHHh----CCCCcHHHHHHHHHHHHHHHH-hccCCCcceEEEeCCC--HHHHHHHHH
Q 015825 239 VRASPLDAIFIFICPPSMEELEERLRA----RGTETEDQILKRLRNAKEEIK-QGKSSGIFDHILYNDK--LEECYENLK 311 (399)
Q Consensus 239 l~~~~~~~~~ili~~P~lllLDEpl~~----lD~~~~e~i~~~L~~~~~~l~-~~~~~~~~t~Viv~hd--leea~~~l~ 311 (399)
++...+..+++|..+|+ .++..|+.. |+.++.+.+..++........ .....+.+..+++|++ +++|+..+.
T Consensus 106 ~~~l~pd~ii~l~a~p~-~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~ 184 (188)
T PRK04040 106 LEELNPDVIVLIEADPD-EILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIV 184 (188)
T ss_pred HhhcCCCEEEEEeCCHH-HHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 34556666666666664 888888854 888888999888877665422 2222355788999999 999999988
Q ss_pred Hhh
Q 015825 312 KHL 314 (399)
Q Consensus 312 ~ii 314 (399)
.++
T Consensus 185 ~ii 187 (188)
T PRK04040 185 EVL 187 (188)
T ss_pred HHh
Confidence 765
No 418
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.56 E-value=4.1e-08 Score=100.56 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=95.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc--
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG-- 207 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~-- 207 (399)
..+|+.+.|+||||||||+|++.|.|+-+...|.-..++...+ .++-|+||.|- +..|+..+-+-|..
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~-----~~lfflPQrPY-----mt~GTLRdQvIYP~~~ 527 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP-----KDLFFLPQRPY-----MTLGTLRDQVIYPLKA 527 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-----CceEEecCCCC-----ccccchhheeeccCcc
Confidence 4689999999999999999999999999877773333332211 34678888762 33445555555541
Q ss_pred ---cccCCcHHHHHHHHHcCC-ceEEe----cchhh-------HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 208 ---NLYGTSVEAVEAVADAGK-RCILD----IDVQG-------ARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 208 ---~~~g~~~~~i~~~~~~g~-~~vld----ld~~g-------~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
...+.+.+.+.+.++..+ ..+++ ++++. +.....|+...+..|.+.|.+.+|||-|++.+.+.+.
T Consensus 528 ~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~ 607 (659)
T KOG0060|consen 528 EDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEG 607 (659)
T ss_pred ccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHH
Confidence 112233344444443211 00000 11100 0111345556667899999999999999999988777
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCH
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKL 303 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdl 303 (399)
.+.+.+++ + ..|.+=|.|-.
T Consensus 608 ~~Yr~~r~----~-------giT~iSVgHRk 627 (659)
T KOG0060|consen 608 ALYRKCRE----M-------GITFISVGHRK 627 (659)
T ss_pred HHHHHHHH----c-------CCeEEEeccHH
Confidence 77766665 2 34788788853
No 419
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.50 E-value=8.8e-08 Score=106.32 Aligned_cols=190 Identities=18% Similarity=0.188 Sum_probs=129.7
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc---ccceeeecCCCcccc-ccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM---FGFSVSHTTRAPRAM-EKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~---~g~~i~~ttr~~~~~-~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.+.++||.|||||||++.|+|..... .| .+++........ .+....|..|+.-.++.+ |+.|.+
T Consensus 136 g~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~-~isy~G~~~~e~~~~~~~aY~~e~DvH~p~l----TVreTl 210 (1391)
T KOG0065|consen 136 GIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSG-EITYNGHDLKEFVPKKTVAYNSEQDVHFPEL----TVRETL 210 (1391)
T ss_pred eeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCC-ceeECCCcccccccCceEEecccccccccee----EEeehh
Confidence 344689999999999999999999999987542 23 444433322211 134478998887778888 888888
Q ss_pred HHhccccCC-------cHHHHHHHHHc------CCceEEec--c---hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 204 SVHGNLYGT-------SVEAVEAVADA------GKRCILDI--D---VQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 204 ~~~~~~~g~-------~~~~i~~~~~~------g~~~vldl--d---~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
.|..+|.+- .+.+....+.+ |+....|- . ..|.....+.++...-.++++++...+||.+++
T Consensus 211 dFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~G 290 (1391)
T KOG0065|consen 211 DFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRG 290 (1391)
T ss_pred hHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccccc
Confidence 888777432 22221110111 33222221 0 112222345666777799999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEE-eCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHIL-YNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Vi-v~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
+|..+.-++.+.++++....+. +.++ +....+++++..|.++.+.+|.++..|...+
T Consensus 291 LDSsTal~iik~lr~~a~~~~~-------t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~ 348 (1391)
T KOG0065|consen 291 LDSSTAFQIIKALRQLAHITGA-------TALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDE 348 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhhhcc-------eEEEEeccCChHHHHhhhheeeeeccceEEeccHHH
Confidence 9999999999999987654322 4443 4457789999999999999999998876443
No 420
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.49 E-value=4.8e-07 Score=83.66 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=47.0
Q ss_pred EEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhc
Q 015825 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLG 315 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~ 315 (399)
+++.+++.+++-+|+..|+..+++++.+++.....+... ...+|++|.|. ++++....+++++.
T Consensus 137 ii~V~a~~e~~~~Rl~~R~~~s~e~~~~Ri~~q~~~~~~---~~~ad~vI~N~g~~e~l~~~i~~~~~ 201 (208)
T PRK14731 137 IVVVAADTELRLERAVQRGMGSREEIRRRIAAQWPQEKL---IERADYVIYNNGTLDELKAQTEQLYQ 201 (208)
T ss_pred EEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcCChHHH---HHhCCEEEECCCCHHHHHHHHHHHHH
Confidence 444456689999999999988899999998753322221 23568888886 89999988887653
No 421
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.49 E-value=6.1e-07 Score=77.59 Aligned_cols=70 Identities=21% Similarity=0.204 Sum_probs=50.0
Q ss_pred cchhhhhccCCCceEEEEeCCCh---HHHHH---HHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 85 DRILVIKKGSSSDDCLWFLEVDT---PYVRE---QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 85 dr~L~~~~~~~~~~~i~~~k~D~---~~~~~---l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.++|.... .+.+.++++||+|. +.... ..+..+++++.+|+... ...++++|++|+||||++|.|.+...
T Consensus 33 ~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~---~~~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 33 ERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKE---NATIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred HHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCC---CcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 56665332 47889999999993 22222 22456788888887521 12789999999999999999998654
No 422
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=4.7e-08 Score=98.97 Aligned_cols=166 Identities=17% Similarity=0.204 Sum_probs=105.0
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~ 212 (399)
...++.+|++|+||||+++.+.+...|..|....| ++. .++|.+|..-.+-.+.. ..+++.+ ...-|.
T Consensus 390 ~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~----~r~----ri~~f~Qhhvd~l~~~v--~~vd~~~--~~~pG~ 457 (582)
T KOG0062|consen 390 DSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH----PRL----RIKYFAQHHVDFLDKNV--NAVDFME--KSFPGK 457 (582)
T ss_pred hhhhheeccCchhHHHHHHHHhccCCcccceeeec----ccc----eecchhHhhhhHHHHHh--HHHHHHH--HhCCCC
Confidence 45689999999999999999999888777733322 222 27888886433322211 2222221 122345
Q ss_pred cHHHHHHHHHc-CCceEEecchhhHHHH---HcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015825 213 SVEAVEAVADA-GKRCILDIDVQGARSV---RASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQG 288 (399)
Q Consensus 213 ~~~~i~~~~~~-g~~~vldld~~g~~~l---~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~ 288 (399)
+.+++++.+.. |..- ++..+....+ ++.++..+.+....|.+++||||++.||.++-..+-+.|+.+.
T Consensus 458 ~~ee~r~hl~~~Gl~g--~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~------ 529 (582)
T KOG0062|consen 458 TEEEIRRHLGSFGLSG--ELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN------ 529 (582)
T ss_pred CHHHHHHHHHhcCCCc--hhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC------
Confidence 66777665543 2211 1111111212 2333444456667888999999999999888777777776532
Q ss_pred cCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 289 KSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 289 ~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
--+|+|+||.+-+-..++++.+-.+|.+..
T Consensus 530 -----GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 530 -----GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred -----CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 157899999988888888888888776654
No 423
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.43 E-value=8.9e-07 Score=79.71 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=49.0
Q ss_pred cCCceEEecchhhHHH---HHcCCcceeEEEEcCCChHHHHHHHHhCCC------CcHHHHHHHHHHHHHHH----Hhcc
Q 015825 223 AGKRCILDIDVQGARS---VRASPLDAIFIFICPPSMEELEERLRARGT------ETEDQILKRLRNAKEEI----KQGK 289 (399)
Q Consensus 223 ~g~~~vldld~~g~~~---l~~~~~~~~~ili~~P~lllLDEpl~~lD~------~~~e~i~~~L~~~~~~l----~~~~ 289 (399)
.+..+++|..+..... +......+-.++..+.+...+-+|+..|.. .+++.+.+++..+..+. ..++
T Consensus 81 ~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~ 160 (188)
T TIGR01360 81 TSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYE 160 (188)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4556777765533322 222222222233333346788888876653 36778888988776542 2222
Q ss_pred CCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 290 SSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 290 ~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
..+.+-.+-.+.+++++...+...+
T Consensus 161 ~~~~~~~id~~~~~~~v~~~i~~~l 185 (188)
T TIGR01360 161 TKGKLRKINAEGTVDDVFLQVCTAI 185 (188)
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHH
Confidence 1122222223447888887776654
No 424
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.42 E-value=9.9e-08 Score=105.30 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=60.9
Q ss_pred CCcceeEEEEc---CCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc--
Q 015825 242 SPLDAIFIFIC---PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL-- 316 (399)
Q Consensus 242 ~~~~~~~ili~---~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~-- 316 (399)
++...+.+|+. .|++.+||||++++|+.....+.+.|.++.++ ..++++++|+++.+ ..+++++.+
T Consensus 835 QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~--------G~TVIvi~H~~~~i-~~aD~ii~Lgp 905 (924)
T TIGR00630 835 QRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ--------GNTVVVIEHNLDVI-KTADYIIDLGP 905 (924)
T ss_pred HHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--------CCEEEEEeCCHHHH-HhCCEEEEecC
Confidence 34444445554 58899999999999999999999999886532 23889999999876 568999988
Q ss_pred ----cCCeeeecCCCcc
Q 015825 317 ----DGSIATNHQTSPK 329 (399)
Q Consensus 317 ----~~~~~~~~~~~~~ 329 (399)
.+|+++..+++.+
T Consensus 906 ~~G~~gG~iv~~G~~~~ 922 (924)
T TIGR00630 906 EGGDGGGTIVASGTPEE 922 (924)
T ss_pred CccCCCCEEEEeCCHHH
Confidence 6788887776543
No 425
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.40 E-value=6.4e-08 Score=85.88 Aligned_cols=56 Identities=13% Similarity=0.042 Sum_probs=43.7
Q ss_pred CCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 253 ~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
+|++.++|||++++|+.....+.+.+.++..+ .+++++++|+.+.+. .+++++.+.
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~--------~~~vii~TH~~~~~~-~~d~~~~l~ 154 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVK--------GAQVIVITHLPELAE-LADKLIHIK 154 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--------CCEEEEEcCCHHHHH-hhhhEEEEE
Confidence 67899999999999999888888888775432 347889999987764 577766654
No 426
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.40 E-value=1.3e-06 Score=76.79 Aligned_cols=85 Identities=19% Similarity=0.160 Sum_probs=57.7
Q ss_pred hhccCCCceEEEEeCCCh---HHHH----HHHHHhCCeEEEeccC-cc-------------------------CCCCcEE
Q 015825 90 IKKGSSSDDCLWFLEVDT---PYVR----EQKKVVGAEVVAWSKG-VI-------------------------GNVEKPV 136 (399)
Q Consensus 90 ~~~~~~~~~~i~~~k~D~---~~~~----~l~~~~g~~v~~~s~~-~~-------------------------~~~g~~~ 136 (399)
.++..+.+.++++||+|. +.+. .+.+..++.++.+|+. .. ...+..+
T Consensus 24 ~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 103 (155)
T cd01849 24 LIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAFTKQTNSNLKSYAKDGKLKKSITV 103 (155)
T ss_pred HHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHHHHHhHHHHHHHHhccccccCcEE
Confidence 345568899999999993 2222 2223446777887765 11 1245678
Q ss_pred EEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcccc
Q 015825 137 VITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAM 175 (399)
Q Consensus 137 ~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~ 175 (399)
+++|.+|+||||++|.|.+......+ ...++|+.....
T Consensus 104 ~~~G~~~~GKstlin~l~~~~~~~~~-~~~~~t~~~~~~ 141 (155)
T cd01849 104 GVIGYPNVGKSSVINALLNKLKLKVG-NVPGTTTSQQEV 141 (155)
T ss_pred EEEccCCCCHHHHHHHHHcccccccc-CCCCcccceEEE
Confidence 99999999999999999987644334 445677665443
No 427
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.39 E-value=6.8e-07 Score=78.64 Aligned_cols=87 Identities=15% Similarity=0.068 Sum_probs=51.6
Q ss_pred cchhhhhccCCCceEEEEeCCCh---HHHH----HHHHHhCCeEEEeccC-ccC-----------------CCCcEEEEE
Q 015825 85 DRILVIKKGSSSDDCLWFLEVDT---PYVR----EQKKVVGAEVVAWSKG-VIG-----------------NVEKPVVIT 139 (399)
Q Consensus 85 dr~L~~~~~~~~~~~i~~~k~D~---~~~~----~l~~~~g~~v~~~s~~-~~~-----------------~~g~~~~l~ 139 (399)
.++|.. ...+.++++++||+|. +.+. .+.+.+...++..|+. ..+ ..+..++++
T Consensus 30 ~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~ 108 (157)
T cd01858 30 EEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKGSLIQLLRQFSKLHSDKKQISVGFI 108 (157)
T ss_pred HHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHHHHHHHHHHHHhhhccccceEEEEE
Confidence 566643 2345889999999993 2222 2222222223444433 110 123456799
Q ss_pred cCCCCCHHHHHhhhhhccCCcccceeeecCCCcc
Q 015825 140 GPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR 173 (399)
Q Consensus 140 GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~ 173 (399)
|++|+|||||+|.|.+......+ .++.+|+...
T Consensus 109 G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~ 141 (157)
T cd01858 109 GYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQ 141 (157)
T ss_pred eCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEE
Confidence 99999999999999987655444 4444555433
No 428
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.39 E-value=2.2e-07 Score=94.32 Aligned_cols=150 Identities=19% Similarity=0.251 Sum_probs=89.6
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
....+|--+.|+||||||||+|.+.|.|+.|...| .. +..++. .+.|+||.|- +..+++.+.+-|..
T Consensus 503 f~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g-~L-~~P~~~------~mFYIPQRPY-----ms~gtlRDQIIYPd 569 (728)
T KOG0064|consen 503 FQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNG-LL-SIPRPN------NIFYIPQRPY-----MSGGTLRDQIIYPD 569 (728)
T ss_pred EEecCCceEEEECCCCccHHHHHHHHhccCcccCC-ee-ecCCCc------ceEeccCCCc-----cCcCcccceeecCC
Confidence 33468999999999999999999999999876555 22 222221 2567777652 22334444443332
Q ss_pred cc-----cCCcHHHHHHHHHc-----------CCceEEecchhh-HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 208 NL-----YGTSVEAVEAVADA-----------GKRCILDIDVQG-ARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 208 ~~-----~g~~~~~i~~~~~~-----------g~~~vldld~~g-~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
.. .|....+..+++.. |...+.| -.. +....+|+...+..|.+.|...+|||-+++..++.
T Consensus 570 S~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~d--Wkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidv 647 (728)
T KOG0064|consen 570 SSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRD--WKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDV 647 (728)
T ss_pred cHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhcc--HHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccch
Confidence 11 23333333332211 1111100 000 00112455556668999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCH
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKL 303 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdl 303 (399)
+..+.+..+.+ .++.+=++|.+
T Consensus 648 E~~i~~~ak~~-----------gi~llsithrp 669 (728)
T KOG0064|consen 648 EGKIFQAAKDA-----------GISLLSITHRP 669 (728)
T ss_pred HHHHHHHHHhc-----------CceEEEeecCc
Confidence 88777666652 44777788854
No 429
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.36 E-value=3.9e-07 Score=82.76 Aligned_cols=177 Identities=15% Similarity=0.089 Sum_probs=104.1
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHHHHHH-Hhhh-----
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKA-IKDG----- 197 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~lf~~~-~~~~----- 197 (399)
.....|....++|.||+|||||++.|.|..-...| .+....+.+-. .......|+=.+ |.+. ...+
T Consensus 35 ldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~-~v~VlgrsaFhDt~l~~Sgdl~YLGge---W~~~~~~agevplq 110 (291)
T KOG2355|consen 35 LDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGG-VVQVLGRSAFHDTSLESSGDLSYLGGE---WSKTVGIAGEVPLQ 110 (291)
T ss_pred eccCCCceEEEEecCCCchhhhHHHhcCcccccCC-eEEEcCcCccccccccccCceeEeccc---cccccccccccccc
Confidence 34568899999999999999999999998654333 33322222111 001112333111 0000 0000
Q ss_pred ---hhHHHHHHhccccCCcHHHHHHHHHcCCceEEecchh----hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 198 ---KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQ----GARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 198 ---~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~----g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
.+.+.+ +. .-|..... .+.+..++|++.+ .....++.+.+...-++.+-.+++|||-+-.+|...
T Consensus 111 ~D~sae~mi-fg--V~g~dp~R-----re~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlA 182 (291)
T KOG2355|consen 111 GDISAEHMI-FG--VGGDDPER-----REKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLA 182 (291)
T ss_pred ccccHHHHH-hh--ccCCChhH-----hhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHH
Confidence 111111 10 01111111 1123344555442 122334566777778888888899999999999888
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+..+.+.+++-.++ ..+|+|+.||-.+..-.+-.+++-+..|+++.
T Consensus 183 RadLLeFlkeEce~-------RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 183 RADLLEFLKEECEQ-------RGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred HHHHHHHHHHHHhh-------cCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 88887777763332 46799999998888878888888888888775
No 430
>KOG0708 consensus Membrane-associated guanylate kinase MAGUK (contains PDZ, SH3, HOOK and GUK domains) [Nucleotide transport and metabolism]
Probab=98.35 E-value=4.4e-06 Score=81.77 Aligned_cols=170 Identities=29% Similarity=0.485 Sum_probs=130.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
..-+++.|+||- |--++..|....+..|+..+.|++++. .+.+......+.|++...+.+++|
T Consensus 185 ~~~RPVlilg~~---~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~eme~~~k~~~fI~~~q~~~~~~ 247 (359)
T KOG0708|consen 185 NYLRPVLILGPL---LDRLLDNLVNEFPDKFKSCLPETLRPS--------------REEMERDSKEETFIDAGQRSNGLY 247 (359)
T ss_pred cccCceEeccch---HHHHHHHHHHhhhccccccchhhhccc--------------HHHhhhhcccCceeeecccCCCcc
Confidence 356899999997 555999998888888987778887754 234555566778889888888999
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
+++...+++..+.++.|++|+...+.+.+++....++++|+..-+...+.|+=..+-....+++.++-..+..++
T Consensus 248 ~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyPIvIfIr~ks~~~i~e~~~~~t~~~ake~~e~a~klEqe~----- 322 (359)
T KOG0708|consen 248 GTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYPIVIFIRVKSKKQIKERNLKITGEQAKELLERARKLEQEL----- 322 (359)
T ss_pred eehHHHHHHHhcCCCceEEecCcchHHHHHhcceeceEEEEEechHHHHHHHhcccchHHHHHHHHHHHHhHhhh-----
Confidence 999999999999999999999999999999999999999999887776666543332333333333333333333
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
...++.++--+.+++++..++.+|....++++
T Consensus 323 ~~~~t~vv~~~s~e~i~~qvk~~I~~Eq~k~i 354 (359)
T KOG0708|consen 323 DRYFTLVVQGGSLEELLSQVKDIIEDEQKKVI 354 (359)
T ss_pred hhceEEEEecccHHHHHHHHHHHHHHhhCCeE
Confidence 34678888888999999999999888766544
No 431
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.33 E-value=1.2e-07 Score=88.06 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=44.3
Q ss_pred EEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHH
Q 015825 250 FICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312 (399)
Q Consensus 250 li~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ 312 (399)
++.+|++.++|||++++|+.++..+.+.+.++.++. +..++++++|++.+....+++
T Consensus 145 ~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~------g~~~viiith~~~~~~~~~~~ 201 (213)
T cd03277 145 ELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKE------GTSQYFLITPKLLPGLNYHEK 201 (213)
T ss_pred hccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcC------CCceEEEEchhhccCCcccCc
Confidence 357899999999999999999999999888864320 123689999988777766654
No 432
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.33 E-value=4.9e-07 Score=91.47 Aligned_cols=185 Identities=16% Similarity=0.126 Sum_probs=121.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCC------CccccccCCeeEEecCh---HHHHHHHhhhhhH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR------APRAMEKDGVHYHFTER---SVMEKAIKDGKFL 200 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr------~~~~~~~~~i~yvfq~~---~lf~~~~~~~~~~ 200 (399)
...|++++|.|-+|-|-+.|+.+|+|+.++..| .+..... .++.....+++|+|.+. .+...+ ++.
T Consensus 281 Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G-~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~----sl~ 355 (501)
T COG3845 281 VRAGEIVGIAGVAGNGQSELVEAISGLRKPASG-RILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDL----SLA 355 (501)
T ss_pred EecCcEEEEEecCCCCHHHHHHHHhCCCccCCc-eEEECCEeccccCCHHHHHhcCCccCChhhccCccccCc----cHH
Confidence 358999999999999999999999999877667 5543222 22333345789998875 122222 555
Q ss_pred HHHHHhccc------cC-CcHHHHHHHHHcCCceEEecc---hh-hHHHHH---cCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 201 EFASVHGNL------YG-TSVEAVEAVADAGKRCILDID---VQ-GARSVR---ASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 201 E~~~~~~~~------~g-~~~~~i~~~~~~g~~~vldld---~~-g~~~l~---~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
||..+.... ++ .....+.+...+ ...-+|+. +. .++.+. .|++-...=+...|++++.-+|+.++
T Consensus 356 eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~-li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGL 434 (501)
T COG3845 356 ENLVLGRHDKKPFSRGGFLDRRAIRKFARE-LIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGL 434 (501)
T ss_pred HHhhhhhccccccccccccCHHHHHHHHHH-HHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccc
Confidence 554432211 11 223333322211 11111211 11 122232 33443444567899999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
|....+.+.++|.+.+++ .+.+++++.|+||++..+|++.++.+|+++....+.
T Consensus 435 DvgA~~~I~~~l~e~r~~--------G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 435 DVGAIEFIHERLLELRDA--------GKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred cHHHHHHHHHHHHHHHhc--------CCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 999999999999886642 457889999999999999999999999888765443
No 433
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.29 E-value=2.4e-06 Score=78.14 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=42.3
Q ss_pred CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhh
Q 015825 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHL 314 (399)
Q Consensus 254 P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii 314 (399)
.+..+.-+|+..|+..+.+++.+++.... ...+....+|+||.|. +++++..+++.++
T Consensus 133 a~~e~~~~Rl~~R~~~s~e~~~~ri~~Q~---~~~~~~~~ad~vI~N~g~~e~l~~qv~~i~ 191 (194)
T PRK00081 133 APPETQLERLMARDGLSEEEAEAIIASQM---PREEKLARADDVIDNNGDLEELRKQVERLL 191 (194)
T ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHhC---CHHHHHHhCCEEEECCCCHHHHHHHHHHHH
Confidence 34688899999998888888888887522 2111223568888887 8999988888765
No 434
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.29 E-value=1e-05 Score=72.47 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=80.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcc---cceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMF---GFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~---g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
+|++++|.|+|||||||+.+.|....+..+ +.+....+.+....... .++-+.. . + +...+ ...++
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~~-~-~------~~~~~--~~~~~ 69 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAE-GGIEFDG-D-G------GVSPG--PEFRL 69 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccc-cccccCc-c-C------Ccccc--hHHHH
Confidence 478999999999999999999988753211 11100000000000000 0000000 0 0 00001 12224
Q ss_pred ccCCcHHHHHHHHHcCCceEEecchh---hHHH-HHcCC-cceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 209 LYGTSVEAVEAVADAGKRCILDIDVQ---GARS-VRASP-LDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 209 ~~g~~~~~i~~~~~~g~~~vldld~~---g~~~-l~~~~-~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
.|+.....+...+..|..+++|.... ..+. .+... .....+++. ++.+++.+|...|...... +.....
T Consensus 70 ~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~-~~~~~l~~R~~~R~~~~~~-----~~~~~~ 143 (175)
T cd00227 70 LEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVR-CPGEVAEGRETARGDRVPG-----QARKQA 143 (175)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEE-CCHHHHHHHHHhcCCccch-----HHHHHH
Confidence 45555666777788899999985432 2222 22111 123334444 4578999999988643221 111111
Q ss_pred HHHhccCCCcceEEEeCC--CHHHHHHHHHH
Q 015825 284 EIKQGKSSGIFDHILYND--KLEECYENLKK 312 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~h--dleea~~~l~~ 312 (399)
........++.++.|+ +++++.+.+.+
T Consensus 144 --~~~~~~~~~dl~iDts~~s~~e~a~~i~~ 172 (175)
T cd00227 144 --RVVHAGVEYDLEVDTTHKTPIECARAIAA 172 (175)
T ss_pred --HHhcCCCcceEEEECCCCCHHHHHHHHHH
Confidence 1112223457777765 68887766654
No 435
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.26 E-value=5.4e-06 Score=81.07 Aligned_cols=90 Identities=27% Similarity=0.264 Sum_probs=63.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCc--------ccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSM--------FGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~--------~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
..++++|+||+|||||||...|+..+... .-..+.++|+.++..+..++.|+|.+...+......+.|.+..
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a 82 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA 82 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH
Confidence 35789999999999999999998876431 1123456899999999999999998865554444444444432
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEec
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILDI 231 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vldl 231 (399)
...+.+..+.+...++..
T Consensus 83 ----------~~~i~~i~~~gk~pIlvG 100 (307)
T PRK00091 83 ----------LAAIADILARGKLPILVG 100 (307)
T ss_pred ----------HHHHHHHHhCCCCEEEEC
Confidence 345555667787777663
No 436
>PRK14530 adenylate kinase; Provisional
Probab=98.26 E-value=3e-05 Score=71.87 Aligned_cols=67 Identities=18% Similarity=0.336 Sum_probs=44.1
Q ss_pred EEEcCCChHHHHH----HHHhCCCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 249 IFICPPSMEELEE----RLRARGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 249 ili~~P~lllLDE----pl~~lD~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
..+.+|+...+.. |+..+..++++.+++|+..+.++ ++++...+.+..|-.+.+++++++.+..++.
T Consensus 138 ~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 212 (215)
T PRK14530 138 VEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAID 212 (215)
T ss_pred cCCCCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHh
Confidence 4445555444433 66777788999999999998875 3333222344445566689999988877654
No 437
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.25 E-value=2.9e-05 Score=69.98 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
+|++++++|||||||||+++.|++++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5899999999999999999999998764
No 438
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.25 E-value=8.5e-07 Score=82.55 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|+||||+||||+++.+.+.
T Consensus 30 ~~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 30 RQILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 389999999999999999999764
No 439
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.14 E-value=2.2e-05 Score=72.32 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.+|++++|+||||||||||++.|++.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47899999999999999999999998764
No 440
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.14 E-value=4.9e-07 Score=90.61 Aligned_cols=33 Identities=36% Similarity=0.566 Sum_probs=30.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
..+|++++|+||||.||||.++.|+|.+.|-.|
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG 129 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLG 129 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCC
Confidence 458999999999999999999999999988776
No 441
>PRK14527 adenylate kinase; Provisional
Probab=98.13 E-value=0.00012 Score=66.48 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=43.2
Q ss_pred EEEcCCChHHHHHHHHhCC------CCcHHHHHHHHHHHHHHHH----hccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 249 IFICPPSMEELEERLRARG------TETEDQILKRLRNAKEEIK----QGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD------~~~~e~i~~~L~~~~~~l~----~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
++..+.+..++-+|+.+|. .++.+.+++++..+.++.. ++...+.+-.|-.+.+.++++..+...+
T Consensus 115 vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 115 VVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred EEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 3444444688888988763 4478899999998887632 3332333444455568999988877654
No 442
>PRK14526 adenylate kinase; Provisional
Probab=98.12 E-value=0.00013 Score=67.75 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=37.6
Q ss_pred HHhCCCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 263 LRARGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
+..|..++++.+++||..++++ +++|...+.+..|-.+.+++++++.+.+++..
T Consensus 152 l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 152 LYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred eeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 3345667899999999999876 44444333444445556899999998887654
No 443
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.11 E-value=4.8e-07 Score=83.48 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=28.2
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++..+.......|++++|+||||+||||+++++.+..
T Consensus 17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3333333344578999999999999999999998753
No 444
>PRK14531 adenylate kinase; Provisional
Probab=98.10 E-value=0.00022 Score=64.41 Aligned_cols=66 Identities=27% Similarity=0.376 Sum_probs=42.3
Q ss_pred EEEcCCChHHHHHHHHhCC--CCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 249 IFICPPSMEELEERLRARG--TETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD--~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
++..+.+..++-+|+.+|. .++++.+++|+..++.. ++++...+.+..|-.+.+.++++..+.+.+
T Consensus 111 vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 111 VVLLELDDAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred EEEEECCHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 3444445688889998663 46788899999988765 333322233333344458888888877654
No 445
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.10 E-value=8.2e-06 Score=74.80 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=45.3
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhh
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHL 314 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii 314 (399)
..+++..| .++.-+|+..|+..+.+++.+++.. ++...+....+|++|.|. ++++...++++++
T Consensus 124 ~vi~V~a~-~e~r~~RL~~R~g~s~e~a~~ri~~---Q~~~~~k~~~aD~vI~N~~~~~~l~~~v~~l~ 188 (196)
T PRK14732 124 ATVTVDSD-PEESILRTISRDGMKKEDVLARIAS---QLPITEKLKRADYIVRNDGNREGLKEECKILY 188 (196)
T ss_pred EEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHH---cCCHHHHHHhCCEEEECCCCHHHHHHHHHHHH
Confidence 34444444 6888899999988888888888865 222112234678999888 8888888887765
No 446
>PLN02422 dephospho-CoA kinase
Probab=98.10 E-value=1.7e-05 Score=74.46 Aligned_cols=58 Identities=26% Similarity=0.280 Sum_probs=43.6
Q ss_pred ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhc
Q 015825 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLG 315 (399)
Q Consensus 255 ~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~ 315 (399)
+.++.-+|+..|+..+.+++.+++.. ++...+....+|++|.|. ++++...++++++.
T Consensus 135 ~~e~ri~RL~~R~g~s~eea~~Ri~~---Q~~~eek~~~AD~VI~N~gs~e~L~~qv~~ll~ 193 (232)
T PLN02422 135 DPETQLERLMARDGLSEEQARNRINA---QMPLDWKRSKADIVIDNSGSLEDLKQQFQKVLE 193 (232)
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHH---cCChhHHHhhCCEEEECCCCHHHHHHHHHHHHH
Confidence 46889999999988888999888854 322222245678898887 89999888888764
No 447
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.08 E-value=7.3e-05 Score=68.20 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+|.+++|.|++||||||+++.|...+.
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987653
No 448
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.07 E-value=1.6e-05 Score=75.21 Aligned_cols=66 Identities=23% Similarity=0.305 Sum_probs=48.0
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC---CHHHHHHHHHHhhcc
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND---KLEECYENLKKHLGL 316 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h---dleea~~~l~~ii~~ 316 (399)
.++++ .++.++.-+|+..|+..+++++.+++.. ++...+....+|+||.|+ ++++...++++++..
T Consensus 139 ~iv~V-~a~~e~ri~RL~~R~g~s~eea~~Ri~~---Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~~~ 207 (244)
T PTZ00451 139 ASVVV-SCSEERQIERLRKRNGFSKEEALQRIGS---QMPLEEKRRLADYIIENDSADDLDELRGSVCDCVAW 207 (244)
T ss_pred eEEEE-ECCHHHHHHHHHHcCCCCHHHHHHHHHh---CCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHHHH
Confidence 33444 3457888999999988888999999866 222222245679999988 899999988887643
No 449
>PRK06762 hypothetical protein; Provisional
Probab=98.07 E-value=0.00012 Score=64.85 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.+++|.|++||||||+.+.|...+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999998876
No 450
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.06 E-value=1.6e-05 Score=72.90 Aligned_cols=63 Identities=24% Similarity=0.272 Sum_probs=44.6
Q ss_pred EEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhh
Q 015825 248 FIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHL 314 (399)
Q Consensus 248 ~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii 314 (399)
.+++. .+.++.-+|+..|+..+++++.+++.. ++........+|+||.|+ ++++...++++++
T Consensus 129 ii~V~-a~~e~r~~Rl~~R~g~s~e~~~~ri~~---Q~~~~~k~~~aD~vI~N~g~~e~l~~qv~~~l 192 (195)
T PRK14730 129 IWVVD-CSPEQQLQRLIKRDGLTEEEAEARINA---QWPLEEKVKLADVVLDNSGDLEKLYQQVDQLL 192 (195)
T ss_pred EEEEE-CCHHHHHHHHHHcCCCCHHHHHHHHHh---CCCHHHHHhhCCEEEECCCCHHHHHHHHHHHH
Confidence 34444 447888899999987788888888865 222111234568898887 8999888888765
No 451
>PLN02674 adenylate kinase
Probab=98.05 E-value=0.00029 Score=66.71 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=37.4
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 262 RLRARGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
|+..|..++++.+++||..++++ +++|+..+.+..|-.+.+++++++.+.+++
T Consensus 187 ~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 187 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 44556777899999999999876 444443344445555668999998887754
No 452
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.05 E-value=1.9e-05 Score=72.85 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=41.7
Q ss_pred ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC--CHHHHHHHHHHhhc
Q 015825 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND--KLEECYENLKKHLG 315 (399)
Q Consensus 255 ~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h--dleea~~~l~~ii~ 315 (399)
+.++.-+|+..||..++++..+++.. |+...+....+|+||.|. ++++...++.+++.
T Consensus 138 ~~e~ri~Rl~~Rd~~s~~~a~~ri~~---Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~ 197 (204)
T PRK14733 138 DLETRIRRLMERDGKNRQQAVAFINL---QISDKEREKIADFVIDNTELTDQELESKLITTIN 197 (204)
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHh---CCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHHH
Confidence 36888899999998888999888865 332222234678998876 67777777776554
No 453
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=2.2e-06 Score=85.46 Aligned_cols=66 Identities=11% Similarity=0.013 Sum_probs=45.3
Q ss_pred cCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 241 ASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 241 ~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
+.++..+.+|...|.++.||||++.+|....-++-..|.-++. |.+||+||.-..-..|..||-+.
T Consensus 418 RMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK-----------TLLIVSHDQgFLD~VCtdIIHLD 483 (807)
T KOG0066|consen 418 RMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK-----------TLLIVSHDQGFLDSVCTDIIHLD 483 (807)
T ss_pred eeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh-----------eeEEEecccchHHHHHHHHhhhh
Confidence 4445556688899999999999999997765556555555432 77899997654444455555444
No 454
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.03 E-value=4.4e-06 Score=77.56 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=34.8
Q ss_pred EEcCCChHHHHHHHHhCCCCcHHHH-HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHH
Q 015825 250 FICPPSMEELEERLRARGTETEDQI-LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYE 308 (399)
Q Consensus 250 li~~P~lllLDEpl~~lD~~~~e~i-~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~ 308 (399)
++.+|++.++|||+++.|+.....+ ...++.+.+. . .....+++++|+.+.+..
T Consensus 105 ~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~-~----~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 105 LATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKR-G----PECPRVIVSTHFHELFNR 159 (213)
T ss_pred hCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc-C----CCCcEEEEEcChHHHHHh
Confidence 4467889999999999997543333 4455554321 0 012367899999876654
No 455
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.01 E-value=2.3e-07 Score=83.70 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=43.0
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
..|++.++|||++++|+.....+.+.+.++... ..++++++|+.+.. ..+++++...
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~--------g~tiIiiSH~~~~~-~~adrvi~i~ 171 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH--------TSQFIVITLKKEMF-ENADKLIGVL 171 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--------CCEEEEEECCHHHH-hhCCeEEEEE
Confidence 578889999999999999888888888775421 24789999997654 4566655544
No 456
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.00 E-value=2e-05 Score=78.43 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=42.2
Q ss_pred ceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHH
Q 015825 245 DAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLE 304 (399)
Q Consensus 245 ~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdle 304 (399)
..+.++..-|.+.+.||--+.+|+.+...+.+-+.++.++. ..|.+++||..|
T Consensus 517 KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~-------giTlivvThrpE 569 (593)
T COG2401 517 KLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREA-------GITLIVVTHRPE 569 (593)
T ss_pred HHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHh-------CCeEEEEecCHH
Confidence 34456777888999999999999998888888888877664 348889999764
No 457
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.98 E-value=8.2e-07 Score=85.30 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
+.++|+||+|||||||++.|++.+.+..|
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G 140 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGIS 140 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCc
Confidence 57899999999999999999999998777
No 458
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.97 E-value=0.00038 Score=62.74 Aligned_cols=31 Identities=35% Similarity=0.594 Sum_probs=25.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCccccee
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSV 165 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i 165 (399)
.+++|.|++||||||+++.|.+.+.. .|..+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~-~g~~v 31 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEA-RGYEV 31 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-cCCeE
Confidence 36899999999999999999988753 44333
No 459
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.95 E-value=2.8e-05 Score=70.50 Aligned_cols=65 Identities=26% Similarity=0.300 Sum_probs=44.5
Q ss_pred cCCCceEEEEeCCCh--H-----HHHHHH-----HHhCC---eEEEeccC-ccC------------CCCcEEEEEcCCCC
Q 015825 93 GSSSDDCLWFLEVDT--P-----YVREQK-----KVVGA---EVVAWSKG-VIG------------NVEKPVVITGPSGV 144 (399)
Q Consensus 93 ~~~~~~~i~~~k~D~--~-----~~~~l~-----~~~g~---~v~~~s~~-~~~------------~~g~~~~l~GpsG~ 144 (399)
..+.+.++++||+|. . .++.+. +..++ +++.+|+. ..+ ..+..++|+|.+|+
T Consensus 59 ~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nv 138 (190)
T cd01855 59 GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGATNV 138 (190)
T ss_pred cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCC
Confidence 356788999999993 1 122222 22333 57777765 221 24578999999999
Q ss_pred CHHHHHhhhhhcc
Q 015825 145 GKGTLISMLMKEF 157 (399)
Q Consensus 145 GKSTl~~~L~~~~ 157 (399)
|||||+|.|.+..
T Consensus 139 GKStliN~l~~~~ 151 (190)
T cd01855 139 GKSTLINALLKKD 151 (190)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999999854
No 460
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.93 E-value=0.00071 Score=60.64 Aligned_cols=61 Identities=28% Similarity=0.416 Sum_probs=37.6
Q ss_pred CChHHHHHHHHhCCC------CcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 254 PSMEELEERLRARGT------ETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 254 P~lllLDEpl~~lD~------~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
.+...+-+|+..|+. ++.+.+++++..+.+. ++.+...+.+..|-.+.+++++.+.+.+++
T Consensus 112 ~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 112 CPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred CCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 345778889887753 3678888888876654 222222223333344558888888776654
No 461
>PRK13808 adenylate kinase; Provisional
Probab=97.93 E-value=0.00054 Score=67.60 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=39.3
Q ss_pred ChHHHHHHHHhC------------CCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 255 SMEELEERLRAR------------GTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 255 ~lllLDEpl~~l------------D~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
+.+++-+|+.+| ..++.+.+++|+..+... +++|...+.+-.|-.+.++++++..+.++|..
T Consensus 116 p~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~ 193 (333)
T PRK13808 116 NEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAA 193 (333)
T ss_pred CHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 347777787764 244788999999887765 33433222222233344889999988887654
No 462
>PRK14528 adenylate kinase; Provisional
Probab=97.93 E-value=0.00044 Score=62.72 Aligned_cols=59 Identities=24% Similarity=0.237 Sum_probs=41.3
Q ss_pred CChHHHHHHHHhC------CCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHH
Q 015825 254 PSMEELEERLRAR------GTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKK 312 (399)
Q Consensus 254 P~lllLDEpl~~l------D~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ 312 (399)
.+...+-+|+.+| ..++.+.+++|+..+..+ +++++..+.+..|-.+.+.++++..+.+
T Consensus 116 ~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~ 184 (186)
T PRK14528 116 VPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQK 184 (186)
T ss_pred CCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHH
Confidence 3357788888855 356899999999999876 4444434455555566688888877654
No 463
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.92 E-value=6.2e-06 Score=68.00 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=22.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhh
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLM 154 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~ 154 (399)
..+|+.++|+||||||||||++++.
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3478999999999999999999987
No 464
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.91 E-value=0.00062 Score=62.85 Aligned_cols=49 Identities=33% Similarity=0.431 Sum_probs=32.4
Q ss_pred CCCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 266 RGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
|..++++.+++|+..++++ ++++...+.+..|-.+.++++++..+.+++
T Consensus 157 R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 157 REDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred CCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 4456789999999998876 233332334444445568999988887654
No 465
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.90 E-value=1.2e-06 Score=84.54 Aligned_cols=57 Identities=9% Similarity=0.040 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 253 ~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
.|++.++|||++++|+.....+.+.+.++.. ..++++++|+++ ....+++++.+..+
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~---------~~tii~isH~~~-~~~~~d~~~~l~~~ 248 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSR---------SHQVLCITHLPQ-VAAMADNHFLVEKE 248 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhC---------CCEEEEEechHH-HHHhcCcEEEEEEe
Confidence 8999999999999999988888888876532 247899999987 45677777766543
No 466
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.86 E-value=2.5e-06 Score=79.70 Aligned_cols=63 Identities=6% Similarity=-0.163 Sum_probs=39.5
Q ss_pred EcCCChHHHHHH---HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 251 ICPPSMEELEER---LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 251 i~~P~lllLDEp---l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+.+|++.+|||| ++.+|+.... +..++.+.++ ..++++++||. .+....++++.....+.+..
T Consensus 107 ~~~~sLvLLDEp~~gT~~lD~~~~~--~~il~~l~~~-------~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~ 172 (222)
T cd03285 107 ATENSLIIIDELGRGTSTYDGFGLA--WAIAEYIATQ-------IKCFCLFATHF-HELTALADEVPNVKNLHVTA 172 (222)
T ss_pred CCCCeEEEEecCcCCCChHHHHHHH--HHHHHHHHhc-------CCCeEEEEech-HHHHHHhhcCCCeEEEEEEE
Confidence 467889999999 6667754332 2222322211 23578899995 67777788776666665543
No 467
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.86 E-value=0.00019 Score=66.08 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++.+++|.|+||||||||++.|.+.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999999873
No 468
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.85 E-value=0.00028 Score=62.01 Aligned_cols=156 Identities=19% Similarity=0.226 Sum_probs=80.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCcH
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSV 214 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~~ 214 (399)
.+.+.||+||||||+.+.|+..+.. .... -|++|.+...=..| ++.|+..+........+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl----~~vs------------aG~iFR~~A~e~gm----sl~ef~~~AE~~p~iD~ 61 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL----KLVS------------AGTIFREMARERGM----SLEEFSRYAEEDPEIDK 61 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC----ceee------------ccHHHHHHHHHcCC----CHHHHHHHHhcCchhhH
Confidence 5789999999999999999987632 1111 13333332111111 55566555544322222
Q ss_pred H---HHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH-HHHH---HHh
Q 015825 215 E---AVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN-AKEE---IKQ 287 (399)
Q Consensus 215 ~---~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~-~~~~---l~~ 287 (399)
. .....+. ...++++-.+.+. +.+ ....+.+++..| +.+.-+|++.|+....+...+.+.. -..+ ...
T Consensus 62 ~iD~rq~e~a~-~~nvVlegrLA~W--i~k-~~adlkI~L~Ap-l~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~ 136 (179)
T COG1102 62 EIDRRQKELAK-EGNVVLEGRLAGW--IVR-EYADLKIWLKAP-LEVRAERIAKREGIDVDEALAETVEREESEKKRYKK 136 (179)
T ss_pred HHHHHHHHHHH-cCCeEEhhhhHHH--Hhc-cccceEEEEeCc-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1112223 3345544322221 111 234455777666 8999999999975554433333221 1111 111
Q ss_pred cc-----CCCcceEEEeCC--CHHHHHHHHHHhhc
Q 015825 288 GK-----SSGIFDHILYND--KLEECYENLKKHLG 315 (399)
Q Consensus 288 ~~-----~~~~~t~Viv~h--dleea~~~l~~ii~ 315 (399)
+. .-..+|.|+-|. +++++...+...+.
T Consensus 137 ~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid 171 (179)
T COG1102 137 IYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAID 171 (179)
T ss_pred HhCCCCccceeeEEEEecccCCHHHHHHHHHHHHH
Confidence 10 123567777665 88888877766544
No 469
>PRK01184 hypothetical protein; Provisional
Probab=97.83 E-value=0.00035 Score=62.92 Aligned_cols=92 Identities=20% Similarity=0.207 Sum_probs=50.5
Q ss_pred CCceEEecc--hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC----CCcHHHHHHHHHHHHHHHHhccCCCcceEE
Q 015825 224 GKRCILDID--VQGARSVRASPLDAIFIFICPPSMEELEERLRARG----TETEDQILKRLRNAKEEIKQGKSSGIFDHI 297 (399)
Q Consensus 224 g~~~vldld--~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD----~~~~e~i~~~L~~~~~~l~~~~~~~~~t~V 297 (399)
+..+++|.. +.....++........++....+....-+|+..|+ ..+.+.+.+++.... .++..+....+|++
T Consensus 80 ~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~-~~~~~~~~~~ad~v 158 (184)
T PRK01184 80 DEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDEREL-SWGIGEVIALADYM 158 (184)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHh-ccCHHHHHHhcCEE
Confidence 456677752 22233333332222333333455788889998886 234566666654421 01111112356888
Q ss_pred EeCC-CHHHHHHHHHHhhcc
Q 015825 298 LYND-KLEECYENLKKHLGL 316 (399)
Q Consensus 298 iv~h-dleea~~~l~~ii~~ 316 (399)
|.|+ ++++....+++++..
T Consensus 159 I~N~~~~~~l~~~v~~~~~~ 178 (184)
T PRK01184 159 IVNDSTLEEFRARVRKLLER 178 (184)
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 8776 899999888887653
No 470
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.83 E-value=4.3e-05 Score=66.93 Aligned_cols=66 Identities=23% Similarity=0.219 Sum_probs=46.7
Q ss_pred ccCCCceEEEEeCCCh--H-HHHH---HHHHhCCeEEEeccC-ccC---------------CCCcEEEEEcCCCCCHHHH
Q 015825 92 KGSSSDDCLWFLEVDT--P-YVRE---QKKVVGAEVVAWSKG-VIG---------------NVEKPVVITGPSGVGKGTL 149 (399)
Q Consensus 92 ~~~~~~~~i~~~k~D~--~-~~~~---l~~~~g~~v~~~s~~-~~~---------------~~g~~~~l~GpsG~GKSTl 149 (399)
...+.+.++++||+|. + ..+. +.+..+++++.+|+. ..+ .....++++|.+|+||||+
T Consensus 38 ~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl 117 (156)
T cd01859 38 LELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSI 117 (156)
T ss_pred HhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHH
Confidence 3457888999999993 2 2222 224457788888865 221 1355779999999999999
Q ss_pred Hhhhhhcc
Q 015825 150 ISMLMKEF 157 (399)
Q Consensus 150 ~~~L~~~~ 157 (399)
++.|.+..
T Consensus 118 ~~~l~~~~ 125 (156)
T cd01859 118 INALKGRH 125 (156)
T ss_pred HHHHhCCC
Confidence 99998754
No 471
>PLN02459 probable adenylate kinase
Probab=97.82 E-value=0.00079 Score=64.22 Aligned_cols=57 Identities=28% Similarity=0.342 Sum_probs=40.5
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 262 RLRARGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
++..|..++++.+++||..++++ +++|...+.+..|-.+.+++++++.+.+++.+..
T Consensus 193 ~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~ 253 (261)
T PLN02459 193 KLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDD 253 (261)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhh
Confidence 45566677899999999999876 3444433444444455689999999998887653
No 472
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.82 E-value=0.00025 Score=63.01 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=18.2
Q ss_pred EcCCCCCHHHHHhhhhhccC
Q 015825 139 TGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 139 ~GpsG~GKSTl~~~L~~~~~ 158 (399)
+|||||||||+++.|.+.+.
T Consensus 1 ~G~sGsGKSTla~~la~~l~ 20 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH 20 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC
Confidence 69999999999999998873
No 473
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=97.81 E-value=9.3e-05 Score=68.04 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=43.3
Q ss_pred EEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhh
Q 015825 248 FIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHL 314 (399)
Q Consensus 248 ~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii 314 (399)
.+++.. +.+..-+|+..++..+.+++.+++....... +....++++|.|. ++++...++++++
T Consensus 129 vi~V~a-~~e~ri~Rl~~R~g~s~e~~~~ri~~Q~~~~---~k~~~ad~vI~N~g~~e~l~~~v~~~~ 192 (200)
T PRK14734 129 VVVVDV-DVEERVRRLVEKRGLDEDDARRRIAAQIPDD---VRLKAADIVVDNNGTREQLLAQVDGLI 192 (200)
T ss_pred EEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHhcCCHH---HHHHhCCEEEECcCCHHHHHHHHHHHH
Confidence 444444 4677889999887777888888887533221 1123568888887 8888888887765
No 474
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.81 E-value=0.00018 Score=65.78 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.++.+++|+|+|||||||+++.|.+.+.+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999997644
No 475
>PRK02496 adk adenylate kinase; Provisional
Probab=97.80 E-value=0.00086 Score=60.39 Aligned_cols=66 Identities=29% Similarity=0.289 Sum_probs=41.8
Q ss_pred EEEcCCChHHHHHHHHhCC--CCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 249 IFICPPSMEELEERLRARG--TETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD--~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
++..+.+...+-+|+..|. .++++.+++++..+... ++.++..+.+..|-.+.+++++...+.+.+
T Consensus 111 vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l 182 (184)
T PRK02496 111 VVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAAL 182 (184)
T ss_pred EEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 3334445678889988664 44678888898888763 223222233334445558999988887654
No 476
>PLN02200 adenylate kinase family protein
Probab=97.79 E-value=0.0018 Score=61.05 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=39.5
Q ss_pred hHHHHHHHHhC----CCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 256 MEELEERLRAR----GTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 256 lllLDEpl~~l----D~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
..++-+|+.+| ..++.+.+++++..+.+. +++++..+.+-.|-.+.+++++++.+.+++..
T Consensus 156 ~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~ 224 (234)
T PLN02200 156 EEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAA 224 (234)
T ss_pred HHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 46777788766 245678888998887765 33332223334444556899999888776543
No 477
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.78 E-value=2.3e-05 Score=73.21 Aligned_cols=37 Identities=24% Similarity=0.220 Sum_probs=29.4
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhh-ccCCccccee
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMK-EFPSMFGFSV 165 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~-~~~~~~g~~i 165 (399)
....|++++|+||||+||||+++.+.+ .+.+..|.-+
T Consensus 27 ~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v 64 (222)
T cd03287 27 SAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFV 64 (222)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 345789999999999999999999998 4555566333
No 478
>PRK14532 adenylate kinase; Provisional
Probab=97.78 E-value=0.0012 Score=59.69 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=37.4
Q ss_pred ChHHHHHHHHhCC------CCcHHHHHHHHHHHHHHH----HhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 255 SMEELEERLRARG------TETEDQILKRLRNAKEEI----KQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 255 ~lllLDEpl~~lD------~~~~e~i~~~L~~~~~~l----~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
+...+-+|+.+|. .++.+.+++++..+..+. ..++..+.+..+-.+.+++++++.+...+
T Consensus 116 ~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l 185 (188)
T PRK14532 116 DDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAAL 185 (188)
T ss_pred CHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHH
Confidence 3577778887652 345678888998887653 33322223222334568999988887655
No 479
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=97.78 E-value=0.00015 Score=65.82 Aligned_cols=88 Identities=25% Similarity=0.312 Sum_probs=55.1
Q ss_pred CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-C
Q 015825 224 GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-K 302 (399)
Q Consensus 224 g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-d 302 (399)
...+++|+.. -++.-.........+..|+- +.--+|+..||..+++..+.|+.. +|...+.....++|+.|. +
T Consensus 107 ~r~ivlDiPL-LFE~~~~~~~~~tvvV~cd~--~~Ql~Rl~~Rd~lse~dAe~Rl~s---Qmp~~~k~~~a~~Vi~Nng~ 180 (225)
T KOG3220|consen 107 YRVIVLDIPL-LFEAKLLKICHKTVVVTCDE--ELQLERLVERDELSEEDAENRLQS---QMPLEKKCELADVVIDNNGS 180 (225)
T ss_pred CeEEEEechH-HHHHhHHhheeeEEEEEECc--HHHHHHHHHhccccHHHHHHHHHh---cCCHHHHHHhhheeecCCCC
Confidence 4567788733 23321222223334445543 666789999998899998888875 322222233457887766 8
Q ss_pred HHHHHHHHHHhhccc
Q 015825 303 LEECYENLKKHLGLD 317 (399)
Q Consensus 303 leea~~~l~~ii~~~ 317 (399)
+++..+++.+++..-
T Consensus 181 ~~~l~~qv~~v~~~~ 195 (225)
T KOG3220|consen 181 LEDLYEQVEKVLALL 195 (225)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999888876654
No 480
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=97.77 E-value=3.6e-05 Score=57.85 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=27.8
Q ss_pred CCCceeccEEEEEe-cCCeeEEEEeeeCCCceEEc
Q 015825 30 ETTTVIGDKTYVIA-GSDESIGVKIYDRSTGNWLI 63 (399)
Q Consensus 30 ~~~~~vGD~v~~~~-~~~~~~i~~i~~r~~~~l~r 63 (399)
...|+|||||.++. +++.++|++|+|| +|.|.|
T Consensus 35 ~~~~~VGD~V~~~~~~~~~~~I~~vl~R-~s~l~R 68 (68)
T cd04466 35 KNPPAVGDRVEFEPEDDGEGVIEEILPR-KNLLIR 68 (68)
T ss_pred CCCCCCCcEEEEEECCCCcEEEEEEecc-ceEEEC
Confidence 35699999999986 4457899999999 899987
No 481
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.77 E-value=1.2e-05 Score=72.91 Aligned_cols=52 Identities=17% Similarity=-0.053 Sum_probs=34.7
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHHH-HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHH
Q 015825 252 CPPSMEELEERLRARGTETEDQILKR-LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~~-L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~ 311 (399)
.+|++.++|||+++.|+.....+... ++.+.++ ..+++++++|+.+ ....++
T Consensus 77 ~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~-------~~~~iii~TH~~~-l~~~~~ 129 (185)
T smart00534 77 TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEK-------IGALTLFATHYHE-LTKLAD 129 (185)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-------CCCeEEEEecHHH-HHHHhh
Confidence 46889999999999998866665433 3433221 1347889999884 444443
No 482
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.75 E-value=0.00052 Score=60.46 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHhhhhhccC
Q 015825 136 VVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++++||+||||||+.+.|.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 47899999999999999998763
No 483
>PRK13796 GTPase YqeH; Provisional
Probab=97.75 E-value=7e-05 Score=75.21 Aligned_cols=95 Identities=23% Similarity=0.263 Sum_probs=61.2
Q ss_pred CCceEEEEeCCCh-------HHHH----HHHHHhCC---eEEEeccC-ccC-----------CCCcEEEEEcCCCCCHHH
Q 015825 95 SSDDCLWFLEVDT-------PYVR----EQKKVVGA---EVVAWSKG-VIG-----------NVEKPVVITGPSGVGKGT 148 (399)
Q Consensus 95 ~~~~~i~~~k~D~-------~~~~----~l~~~~g~---~v~~~s~~-~~~-----------~~g~~~~l~GpsG~GKST 148 (399)
+.+.++++||+|. +.++ ...+..|+ .++.+|+. ..+ .+++.+.++|.+++||||
T Consensus 96 ~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKST 175 (365)
T PRK13796 96 NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKST 175 (365)
T ss_pred CCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHH
Confidence 5678899999993 1222 22355676 57777765 111 267789999999999999
Q ss_pred HHhhhhhccC-----CcccceeeecCCCccccccCCeeEEecChHHH
Q 015825 149 LISMLMKEFP-----SMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 149 l~~~L~~~~~-----~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf 190 (399)
|+|.|.+... ...+ ..++||+........+..+++..+.++
T Consensus 176 LiN~L~~~~~~~~~~~~~s-~~pGTT~~~~~~~l~~~~~l~DTPGi~ 221 (365)
T PRK13796 176 LINRIIKEITGEKDVITTS-RFPGTTLDKIEIPLDDGSFLYDTPGII 221 (365)
T ss_pred HHHHHHhhccCccceEEec-CCCCccceeEEEEcCCCcEEEECCCcc
Confidence 9999986531 1122 345677766554443334666666654
No 484
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.75 E-value=4.9e-05 Score=68.90 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~ 166 (399)
..|+.++|+||+||||||++++|+++.++..+ .+.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~-~i~ 57 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDER-IIT 57 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCC-EEE
Confidence 36899999999999999999999999987666 443
No 485
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.73 E-value=0.00012 Score=62.62 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++.++||+||||||+++.|.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 478999999999999999987653
No 486
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.73 E-value=0.0018 Score=59.94 Aligned_cols=50 Identities=26% Similarity=0.425 Sum_probs=32.4
Q ss_pred CCCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 266 RGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
+..++++.+++|+..++.+ ++.+...+.+-.|-.+.+.+++++.+..++.
T Consensus 160 r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 213 (215)
T PRK00279 160 RADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALG 213 (215)
T ss_pred CCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 3456789999999998865 2233222233334445589999988877653
No 487
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.71 E-value=9.8e-05 Score=75.63 Aligned_cols=178 Identities=17% Similarity=0.150 Sum_probs=93.1
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee---cCCCcc---------ccccCCeeEEecChHH-HHHHHh
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH---TTRAPR---------AMEKDGVHYHFTERSV-MEKAIK 195 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~---ttr~~~---------~~~~~~i~yvfq~~~l-f~~~~~ 195 (399)
...+|+.++|+|+||+|||||+++|++...+..| .+.. ..+... ....+.+.++.++..- ..+...
T Consensus 154 ~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~g-vI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~ 232 (438)
T PRK07721 154 TVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLN-VIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKG 232 (438)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhcccCCCeE-EEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHH
Confidence 3458999999999999999999999999888666 4432 111111 0112234555443211 111111
Q ss_pred hhhhHHHHHHhccccCCcHHHHHHHHHcCCceEEecchh--hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQ--GARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~--g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
........+|. ...|+.+++-+|-- -++.++. ++..+-.|+ -+.++|+.....
T Consensus 233 ~~~a~~iAEyf--------------r~~g~~Vll~~Dsltr~A~A~rE-----isl~~ge~P------~~~G~dp~~~~~ 287 (438)
T PRK07721 233 AYTATAIAEYF--------------RDQGLNVMLMMDSVTRVAMAQRE-----IGLAVGEPP------TTKGYTPSVFAI 287 (438)
T ss_pred HHHHHHHHHHH--------------HHCCCcEEEEEeChHHHHHHHHH-----HHHhcCCCC------ccccCCHHHHHH
Confidence 10111111111 13455555444321 0111110 001111221 134777767677
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+.+.++++... ....--..+++++.+||+++ ..++++..+.+|.++..+...+--..|+
T Consensus 288 l~~ller~~~~-~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~~g~~PA 346 (438)
T PRK07721 288 LPKLLERTGTN-ASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLANKGQYPA 346 (438)
T ss_pred HHHHHHHhcCC-CCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHHCCCCCc
Confidence 77777765320 01000112577889999986 5688999999999988766554444444
No 488
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.70 E-value=2e-05 Score=72.76 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=30.2
Q ss_pred EEEcCCChHHHHHHH-----HhCCCCcHHHHHHHHHHHH
Q 015825 249 IFICPPSMEELEERL-----RARGTETEDQILKRLRNAK 282 (399)
Q Consensus 249 ili~~P~lllLDEpl-----~~lD~~~~e~i~~~L~~~~ 282 (399)
.++.+|++.++|||+ .++|+...+.+.+.++++.
T Consensus 166 ~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 166 RLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 567789999999999 9999999999999888864
No 489
>PRK12338 hypothetical protein; Provisional
Probab=97.68 E-value=0.00042 Score=67.96 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..++++.|+|||||||+.+.|+..+.
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCC
Confidence 46889999999999999999998764
No 490
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.68 E-value=0.00052 Score=61.97 Aligned_cols=65 Identities=23% Similarity=0.229 Sum_probs=38.4
Q ss_pred eEEEEcCCChHHHHHHHHhCC---CCcHHHHHHHHHHHHHHHHhccCCCcceE-EEeCCCHHHHHHHHHHh
Q 015825 247 IFIFICPPSMEELEERLRARG---TETEDQILKRLRNAKEEIKQGKSSGIFDH-ILYNDKLEECYENLKKH 313 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD---~~~~e~i~~~L~~~~~~l~~~~~~~~~t~-Viv~hdleea~~~l~~i 313 (399)
-.+.-++.+.+.+-+|+.++. .++.+.+.+++..+..+....- ..+.+ |-....+++.++.+.+.
T Consensus 108 d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~~~pli--~~y~~~id~~~~i~~v~~~i~~~ 176 (178)
T COG0563 108 DMVIELDVPEELLLERLLGRRVREDDNEETVKKRLKVYHEQTAPLI--EYYSVTIDGSGEIEEVLADILKA 176 (178)
T ss_pred ceEEeeeCCHHHHHHHHhCccccccCCHHHHHHHHHHHHhcccchh--hhheeeccCCCCHHHHHHHHHHh
Confidence 334444444588889998884 5788999999998876522100 01111 11234777777766553
No 491
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.67 E-value=0.00011 Score=66.63 Aligned_cols=59 Identities=25% Similarity=0.287 Sum_probs=41.1
Q ss_pred EEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHH
Q 015825 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLK 311 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~ 311 (399)
+++. .+..+.-+|+..|+..+.+++.+++..... ..+....+|++|.|+ ++++...+++
T Consensus 128 v~V~-~~~~~~~~Rl~~R~~~s~~~~~~r~~~q~~---~~~~~~~ad~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 128 IVVD-VSPQLQLERLMQRDNLTEEEVQKRLASQMD---IEERLARADDVIDNSATLADLVKQLE 187 (188)
T ss_pred EEEE-CCHHHHHHHHHHcCCCCHHHHHHHHHhcCC---HHHHHHhCCEEEECCCCHHHHHHHHh
Confidence 4444 457999999999988888888888876322 111234578898887 7877776654
No 492
>PRK13974 thymidylate kinase; Provisional
Probab=97.66 E-value=0.0019 Score=59.73 Aligned_cols=27 Identities=41% Similarity=0.508 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+|++++|.|+.||||||+++.|.+.++
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999998875
No 493
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.65 E-value=0.00018 Score=71.16 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
++.++|+|++|+|||||++.|+..+..
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~ 188 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNT 188 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 789999999999999999999997643
No 494
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.64 E-value=2.1e-05 Score=86.02 Aligned_cols=46 Identities=9% Similarity=-0.024 Sum_probs=33.9
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHH-HHHHHHHHHHHhccCCCcceEEEeCCCHHH
Q 015825 252 CPPSMEELEERLRARGTETEDQIL-KRLRNAKEEIKQGKSSGIFDHILYNDKLEE 305 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~-~~L~~~~~~l~~~~~~~~~t~Viv~hdlee 305 (399)
.+|++.++|||.++.|+.....+. ..+..+.. ..+.++++||+.+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~--------~g~~viitTH~~eL 447 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLK--------QNAQVLITTHYKEL 447 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh--------cCCEEEEECChHHH
Confidence 468899999999999998877774 44554432 24578899998754
No 495
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.62 E-value=7.9e-05 Score=66.69 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+|.+++|.|++||||||+++.|...+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999988764
No 496
>PRK13973 thymidylate kinase; Provisional
Probab=97.62 E-value=0.0031 Score=58.40 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~ 166 (399)
+|.+++|-|+.||||||+++.|...+.. .|..+.
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~-~g~~~~ 35 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRA-AGYDVL 35 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEE
Confidence 5889999999999999999999988753 343443
No 497
>PRK08233 hypothetical protein; Provisional
Probab=97.62 E-value=0.0021 Score=57.30 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++.+++|.|++||||||+.+.|+..++
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999998764
No 498
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.61 E-value=0.00046 Score=61.64 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
+|++++|+|++||||||+.+.|++.+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999998754
No 499
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.59 E-value=0.00064 Score=71.46 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=35.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHH
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~ 193 (399)
.+++|.||||||||||+++|++.++ ..+ .++...-.... ...++.|+++..++..
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp-~vg-vIsmDdy~~~~---~~i~~nfD~P~a~D~d 120 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMP-SIA-VISMDNYNDSS---RIIDGNFDDPRLTDYD 120 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCC-CcE-EEEEcceecch---hhhCccCCChhhcchh
Confidence 5899999999999999999999874 233 34332211111 1245667777666543
No 500
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.58 E-value=0.00014 Score=65.50 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=34.1
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND 301 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h 301 (399)
..+++..| .+..-+|+..||..+.+++.+++..- +...+....+|+||.|.
T Consensus 124 ~vv~V~a~-~~~ri~Rl~~Rd~~s~~~~~~r~~~Q---~~~~~~~~~aD~vI~N~ 174 (179)
T cd02022 124 RVIVVDAP-PEIQIERLMKRDGLSEEEAEARIASQ---MPLEEKRARADFVIDNS 174 (179)
T ss_pred eEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhc---CCHHHHHHhCCEEEECc
Confidence 34444444 68888999999888888888888762 22111234568888876
Done!