Query 015825
Match_columns 399
No_of_seqs 466 out of 3761
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 03:10:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ex7_A Guanylate kinase; subst 100.0 1.6E-29 5.4E-34 228.3 15.3 182 134-316 2-184 (186)
2 1t9h_A YLOQ, probable GTPase E 99.9 4.4E-27 1.5E-31 227.9 8.7 156 30-190 48-235 (307)
3 3a00_A Guanylate kinase, GMP k 99.9 5.2E-26 1.8E-30 204.7 10.9 183 133-316 1-184 (186)
4 3rlf_A Maltose/maltodextrin im 99.9 2.7E-27 9.2E-32 235.3 -1.0 216 117-344 13-235 (381)
5 3fvq_A Fe(3+) IONS import ATP- 99.9 2.8E-27 9.7E-32 233.5 -1.3 216 117-344 14-240 (359)
6 1lvg_A Guanylate kinase, GMP k 99.9 7.4E-25 2.5E-29 199.4 14.5 185 132-316 3-187 (198)
7 1s96_A Guanylate kinase, GMP k 99.9 9.4E-25 3.2E-29 202.1 14.6 184 130-317 13-198 (219)
8 3ney_A 55 kDa erythrocyte memb 99.9 1.3E-24 4.5E-29 197.6 13.5 176 129-317 15-190 (197)
9 2it1_A 362AA long hypothetical 99.9 2.8E-26 9.5E-31 227.1 -0.3 211 122-344 18-235 (362)
10 1g29_1 MALK, maltose transport 99.9 2.1E-26 7E-31 229.0 -1.3 215 118-344 14-241 (372)
11 2yyz_A Sugar ABC transporter, 99.9 2.3E-26 7.8E-31 227.4 -1.6 216 117-344 13-235 (359)
12 2rcn_A Probable GTPase ENGC; Y 99.9 6.7E-25 2.3E-29 216.5 8.4 141 22-166 70-248 (358)
13 1v43_A Sugar-binding transport 99.9 2.9E-26 1E-30 227.7 -1.5 216 117-344 21-243 (372)
14 1z47_A CYSA, putative ABC-tran 99.9 2E-26 6.7E-31 227.5 -2.7 205 128-344 36-247 (355)
15 1oxx_K GLCV, glucose, ABC tran 99.9 2.6E-26 9E-31 226.8 -1.9 207 126-344 24-242 (353)
16 1znw_A Guanylate kinase, GMP k 99.9 2.5E-23 8.6E-28 190.2 15.5 185 129-317 16-202 (207)
17 1z6g_A Guanylate kinase; struc 99.9 2.5E-23 8.7E-28 192.1 15.5 186 129-318 19-209 (218)
18 3d31_A Sulfate/molybdate ABC t 99.9 3E-26 1E-30 225.9 -5.2 211 122-344 15-229 (348)
19 3tau_A Guanylate kinase, GMP k 99.9 7.7E-24 2.6E-28 193.9 10.8 184 131-317 6-189 (208)
20 3tui_C Methionine import ATP-b 99.9 1.3E-25 4.4E-30 221.9 -1.8 202 125-338 46-259 (366)
21 3tvt_A Disks large 1 tumor sup 99.9 1.4E-22 4.8E-27 194.9 13.1 181 131-319 98-279 (292)
22 2yv5_A YJEQ protein; hydrolase 99.9 2.9E-22 9.9E-27 194.1 14.8 152 33-189 44-226 (302)
23 1b0u_A Histidine permease; ABC 99.9 1.8E-24 6E-29 205.6 -3.6 206 118-336 17-246 (262)
24 1kgd_A CASK, peripheral plasma 99.9 2.7E-22 9.3E-27 179.4 10.2 175 131-315 3-177 (180)
25 2olj_A Amino acid ABC transpor 99.9 3.4E-24 1.2E-28 203.6 -3.1 204 120-336 37-252 (263)
26 3tr0_A Guanylate kinase, GMP k 99.9 1.4E-21 4.7E-26 177.1 13.4 183 131-317 5-187 (205)
27 3tif_A Uncharacterized ABC tra 99.9 1.6E-23 5.4E-28 195.9 -2.8 191 126-329 24-231 (235)
28 3lnc_A Guanylate kinase, GMP k 99.9 3.2E-22 1.1E-26 185.7 6.0 186 130-319 24-211 (231)
29 1kjw_A Postsynaptic density pr 99.9 4.3E-21 1.5E-25 185.1 13.9 180 131-319 103-284 (295)
30 3gfo_A Cobalt import ATP-bindi 99.8 6.1E-24 2.1E-28 203.1 -6.3 201 122-334 23-235 (275)
31 2pcj_A ABC transporter, lipopr 99.8 1.6E-23 5.4E-28 194.5 -3.8 192 120-325 17-221 (224)
32 2onk_A Molybdate/tungstate ABC 99.8 1.8E-23 6.2E-28 196.1 -4.3 194 128-334 20-218 (240)
33 1vpl_A ABC transporter, ATP-bi 99.8 2E-23 6.7E-28 197.7 -4.7 202 117-331 25-234 (256)
34 4g1u_C Hemin import ATP-bindin 99.8 2.5E-23 8.7E-28 198.0 -4.7 205 117-333 21-238 (266)
35 1g6h_A High-affinity branched- 99.8 1.9E-23 6.6E-28 197.9 -5.7 199 118-329 18-239 (257)
36 1ji0_A ABC transporter; ATP bi 99.8 3.3E-23 1.1E-27 194.3 -5.5 203 118-333 17-229 (240)
37 2qor_A Guanylate kinase; phosp 99.8 4.2E-20 1.4E-24 168.2 15.2 185 131-316 10-196 (204)
38 3gd7_A Fusion complex of cysti 99.8 6.3E-23 2.1E-27 204.9 -8.5 197 128-344 42-254 (390)
39 2nq2_C Hypothetical ABC transp 99.8 1.9E-22 6.4E-27 190.6 -5.5 189 122-332 20-217 (253)
40 2qi9_C Vitamin B12 import ATP- 99.8 3.6E-22 1.2E-26 188.3 -4.6 189 129-332 22-222 (249)
41 2yz2_A Putative ABC transporte 99.8 2.8E-22 9.6E-27 190.8 -6.6 199 122-333 22-228 (266)
42 2ihy_A ABC transporter, ATP-bi 99.8 3.9E-22 1.3E-26 191.1 -7.5 203 117-332 31-252 (279)
43 1sgw_A Putative ABC transporte 99.8 1.4E-21 4.8E-26 180.1 -3.8 181 122-317 24-207 (214)
44 3nh6_A ATP-binding cassette SU 99.8 2.1E-21 7.2E-26 188.1 -5.4 194 123-334 70-279 (306)
45 2ixe_A Antigen peptide transpo 99.8 8.8E-22 3E-26 187.9 -8.1 193 126-333 38-246 (271)
46 2ff7_A Alpha-hemolysin translo 99.8 1.9E-21 6.5E-26 183.1 -6.4 195 122-334 24-234 (247)
47 2xkx_A Disks large homolog 4; 99.8 3.6E-18 1.2E-22 183.5 17.2 179 131-318 529-709 (721)
48 1mv5_A LMRA, multidrug resista 99.8 4.3E-21 1.5E-25 180.2 -5.2 188 128-332 23-226 (243)
49 2pjz_A Hypothetical protein ST 99.8 8.5E-21 2.9E-25 180.2 -3.8 190 122-331 20-214 (263)
50 2j41_A Guanylate kinase; GMP, 99.8 1.2E-18 4.2E-23 157.6 10.4 183 131-316 4-186 (207)
51 2d2e_A SUFC protein; ABC-ATPas 99.7 5.1E-21 1.7E-25 180.5 -8.5 195 121-328 17-229 (250)
52 2zu0_C Probable ATP-dependent 99.7 1.2E-20 4.2E-25 179.5 -8.5 199 120-331 33-253 (267)
53 3b5x_A Lipid A export ATP-bind 99.7 5.3E-19 1.8E-23 185.7 1.6 191 127-334 363-569 (582)
54 2ghi_A Transport protein; mult 99.7 3.7E-20 1.3E-24 175.6 -6.8 186 128-332 41-242 (260)
55 2pze_A Cystic fibrosis transme 99.7 4.4E-20 1.5E-24 171.8 -9.0 178 128-333 29-219 (229)
56 2cbz_A Multidrug resistance-as 99.7 4.3E-20 1.5E-24 172.7 -9.9 181 128-332 26-217 (237)
57 1u0l_A Probable GTPase ENGC; p 99.7 8.2E-17 2.8E-21 155.6 12.3 156 29-188 45-230 (301)
58 2yl4_A ATP-binding cassette SU 99.7 5E-19 1.7E-23 186.3 -3.7 195 123-333 360-571 (595)
59 3qf4_A ABC transporter, ATP-bi 99.7 5.3E-19 1.8E-23 185.9 -5.9 188 128-333 364-567 (587)
60 4a82_A Cystic fibrosis transme 99.7 5.5E-19 1.9E-23 185.4 -6.7 189 128-334 362-566 (578)
61 3b60_A Lipid A export ATP-bind 99.7 5.8E-19 2E-23 185.4 -6.6 190 127-333 363-568 (582)
62 3j16_B RLI1P; ribosome recycli 99.7 3.6E-18 1.2E-22 179.6 -2.4 182 131-333 376-560 (608)
63 3qf4_B Uncharacterized ABC tra 99.7 8.5E-19 2.9E-23 184.7 -7.2 189 128-334 376-580 (598)
64 1yqt_A RNAse L inhibitor; ATP- 99.6 2.6E-18 9E-23 178.7 -4.2 180 131-332 310-493 (538)
65 3bk7_A ABC transporter ATP-bin 99.6 3.2E-18 1.1E-22 180.2 -4.3 180 131-332 380-563 (607)
66 2bbs_A Cystic fibrosis transme 99.6 5.5E-19 1.9E-23 170.0 -9.3 179 125-332 56-247 (290)
67 3ozx_A RNAse L inhibitor; ATP 99.6 1.5E-17 5E-22 172.9 -2.8 169 130-318 291-461 (538)
68 4f4c_A Multidrug resistance pr 99.6 8E-18 2.7E-22 191.3 -9.8 191 129-335 1101-1307(1321)
69 3g5u_A MCG1178, multidrug resi 99.6 2.3E-17 7.9E-22 187.1 -6.2 190 130-335 1056-1261(1284)
70 3g5u_A MCG1178, multidrug resi 99.5 6.4E-17 2.2E-21 183.5 -6.5 189 128-334 411-615 (1284)
71 4f4c_A Multidrug resistance pr 99.5 1.1E-16 3.8E-21 182.0 -4.9 189 128-334 439-643 (1321)
72 3tsz_A Tight junction protein 99.5 5.3E-14 1.8E-18 140.6 12.9 150 131-317 230-381 (391)
73 3shw_A Tight junction protein 99.5 4.3E-14 1.5E-18 143.5 10.9 152 131-319 222-375 (468)
74 3bk7_A ABC transporter ATP-bin 99.5 6.1E-16 2.1E-20 162.8 -3.3 177 129-319 113-304 (607)
75 1yqt_A RNAse L inhibitor; ATP- 99.5 1E-15 3.4E-20 159.2 -2.4 180 123-318 38-233 (538)
76 3ux8_A Excinuclease ABC, A sub 99.5 9.8E-16 3.3E-20 163.4 -4.1 86 240-334 207-300 (670)
77 3ozx_A RNAse L inhibitor; ATP 99.4 4.3E-15 1.5E-19 154.3 -4.3 173 130-318 22-212 (538)
78 2iw3_A Elongation factor 3A; a 99.4 4.8E-15 1.6E-19 162.1 -5.1 174 128-330 456-633 (986)
79 3j16_B RLI1P; ribosome recycli 99.4 5.7E-15 1.9E-19 155.3 -4.6 178 130-319 100-297 (608)
80 3ux8_A Excinuclease ABC, A sub 99.4 1.5E-14 5.1E-19 154.2 -4.7 88 238-334 546-642 (670)
81 4dey_A Voltage-dependent L-typ 99.3 1.3E-12 4.4E-17 126.5 8.7 173 133-316 142-320 (337)
82 3kfv_A Tight junction protein 99.3 4.4E-12 1.5E-16 122.1 12.1 147 131-317 143-290 (308)
83 3b85_A Phosphate starvation-in 99.3 1E-14 3.5E-19 133.6 -6.5 140 131-307 20-162 (208)
84 2iw3_A Elongation factor 3A; a 99.3 5.1E-14 1.8E-18 154.0 -3.2 75 240-325 906-980 (986)
85 2npi_A Protein CLP1; CLP1-PCF1 99.2 6.9E-14 2.3E-18 142.6 -9.0 177 128-330 133-336 (460)
86 4gp7_A Metallophosphoesterase; 99.2 1.5E-12 5.2E-17 115.0 -1.3 25 131-155 7-31 (171)
87 1tq4_A IIGP1, interferon-induc 99.1 6.5E-11 2.2E-15 118.8 6.7 136 133-282 69-213 (413)
88 3pih_A Uvrabc system protein A 99.1 1.8E-12 6.2E-17 141.4 -5.9 86 241-335 811-905 (916)
89 2bbw_A Adenylate kinase 4, AK4 99.0 4.9E-11 1.7E-15 111.1 0.6 178 132-315 26-233 (246)
90 3b9q_A Chloroplast SRP recepto 99.0 6.9E-11 2.4E-15 114.1 1.6 140 130-301 97-255 (302)
91 2vf7_A UVRA2, excinuclease ABC 99.0 1.2E-11 4.2E-16 133.8 -5.2 86 240-334 735-829 (842)
92 2dpy_A FLII, flagellum-specifi 98.9 9.1E-11 3.1E-15 118.9 0.4 176 129-335 153-347 (438)
93 2r6f_A Excinuclease ABC subuni 98.9 2.1E-11 7.3E-16 132.6 -5.0 87 240-335 850-945 (972)
94 1rj9_A FTSY, signal recognitio 98.9 3E-10 1E-14 109.7 3.4 141 132-302 101-257 (304)
95 2ehv_A Hypothetical protein PH 98.9 2.5E-11 8.5E-16 112.3 -4.4 25 131-155 28-52 (251)
96 2og2_A Putative signal recogni 98.9 2E-10 7E-15 113.2 1.6 140 130-301 154-312 (359)
97 2ygr_A Uvrabc system protein A 98.9 2.5E-11 8.6E-16 132.5 -7.0 86 240-334 868-962 (993)
98 3szr_A Interferon-induced GTP- 98.9 1.7E-10 5.7E-15 121.6 -1.5 145 135-312 47-209 (608)
99 3asz_A Uridine kinase; cytidin 98.9 1.5E-09 5E-14 98.3 4.8 129 131-281 4-146 (211)
100 4eun_A Thermoresistant glucoki 98.8 2.2E-08 7.4E-13 90.1 12.3 158 131-316 27-193 (200)
101 4aby_A DNA repair protein RECN 98.8 2.9E-11 1E-15 121.0 -8.6 71 243-323 303-379 (415)
102 3aez_A Pantothenate kinase; tr 98.8 3.4E-10 1.2E-14 109.7 -0.9 148 130-318 87-244 (312)
103 1ye8_A Protein THEP1, hypothet 98.8 1.1E-10 3.6E-15 104.1 -4.3 136 135-308 2-148 (178)
104 2bdt_A BH3686; alpha-beta prot 98.7 2.9E-08 1E-12 88.1 9.5 168 133-328 2-180 (189)
105 3sop_A Neuronal-specific septi 98.7 8.4E-11 2.9E-15 111.7 -9.3 70 135-209 4-74 (270)
106 2eyu_A Twitching motility prot 98.7 9.7E-10 3.3E-14 103.8 -2.9 36 130-166 22-58 (261)
107 2pt7_A CAG-ALFA; ATPase, prote 98.6 1.8E-09 6.2E-14 105.4 -1.7 36 131-167 169-204 (330)
108 3qf7_A RAD50; ABC-ATPase, ATPa 98.6 6.9E-10 2.3E-14 109.8 -5.0 62 252-322 302-363 (365)
109 1knq_A Gluconate kinase; ALFA/ 98.6 4.7E-07 1.6E-11 79.1 13.7 158 131-314 6-171 (175)
110 1htw_A HI0065; nucleotide-bind 98.6 1.4E-08 4.7E-13 88.6 2.9 68 129-205 29-97 (158)
111 2i3b_A HCR-ntpase, human cance 98.6 9.8E-10 3.3E-14 98.8 -5.2 51 133-187 1-54 (189)
112 3jvv_A Twitching mobility prot 98.6 2.5E-09 8.5E-14 105.4 -3.1 32 131-162 121-152 (356)
113 4a74_A DNA repair and recombin 98.6 1.4E-08 4.7E-13 92.5 1.7 29 131-159 23-51 (231)
114 2obl_A ESCN; ATPase, hydrolase 98.5 2.4E-08 8.1E-13 98.1 2.7 174 131-337 69-260 (347)
115 1cr0_A DNA primase/helicase; R 98.5 8.1E-10 2.8E-14 105.6 -7.9 33 130-162 32-64 (296)
116 3e70_C DPA, signal recognition 98.5 1.3E-08 4.4E-13 99.2 0.1 70 131-205 127-206 (328)
117 1tf7_A KAIC; homohexamer, hexa 98.5 3.8E-09 1.3E-13 109.3 -4.1 150 131-319 279-443 (525)
118 3tlx_A Adenylate kinase 2; str 98.5 3.2E-06 1.1E-10 78.5 15.7 26 132-157 28-53 (243)
119 1gvn_B Zeta; postsegregational 98.5 2.6E-07 8.8E-12 88.2 8.3 152 131-302 31-206 (287)
120 4eaq_A DTMP kinase, thymidylat 98.5 1.7E-06 5.7E-11 79.8 13.4 171 131-315 24-223 (229)
121 2jeo_A Uridine-cytidine kinase 98.5 1.1E-06 3.6E-11 81.6 12.1 31 127-157 19-49 (245)
122 3umf_A Adenylate kinase; rossm 98.4 5.8E-06 2E-10 75.7 15.8 161 131-316 27-213 (217)
123 3sr0_A Adenylate kinase; phosp 98.4 7.1E-06 2.4E-10 74.4 16.3 155 135-315 2-203 (206)
124 3vaa_A Shikimate kinase, SK; s 98.4 1.5E-06 5.2E-11 77.8 11.5 27 131-157 23-49 (199)
125 3t61_A Gluconokinase; PSI-biol 98.4 9.6E-07 3.3E-11 79.1 9.9 155 133-317 18-180 (202)
126 3thx_A DNA mismatch repair pro 98.4 5.6E-09 1.9E-13 114.4 -6.7 69 251-327 739-808 (934)
127 3lw7_A Adenylate kinase relate 98.4 1.2E-05 4.2E-10 69.0 15.9 91 222-315 76-175 (179)
128 2v9p_A Replication protein E1; 98.4 6.9E-09 2.4E-13 100.0 -6.2 32 128-162 121-152 (305)
129 1wb9_A DNA mismatch repair pro 98.3 1.9E-08 6.4E-13 108.9 -3.6 63 251-321 684-747 (800)
130 3dl0_A Adenylate kinase; phosp 98.3 2.2E-05 7.6E-10 70.7 16.9 49 267-315 161-213 (216)
131 1tf7_A KAIC; homohexamer, hexa 98.3 1.1E-08 3.8E-13 105.9 -6.3 57 131-188 37-98 (525)
132 2w0m_A SSO2452; RECA, SSPF, un 98.3 2.4E-08 8.2E-13 90.7 -3.4 32 131-162 21-52 (235)
133 3cnl_A YLQF, putative uncharac 98.3 1.7E-06 5.9E-11 81.5 8.9 77 95-173 46-138 (262)
134 1e69_A Chromosome segregation 98.3 2.9E-09 1E-13 103.3 -10.6 58 252-319 240-299 (322)
135 1zp6_A Hypothetical protein AT 98.3 1.8E-06 6.1E-11 76.3 8.4 26 131-156 7-32 (191)
136 3fb4_A Adenylate kinase; psych 98.3 3E-05 1E-09 69.8 16.4 67 248-315 110-213 (216)
137 2o8b_B DNA mismatch repair pro 98.3 1.7E-08 5.9E-13 111.8 -6.3 61 249-316 864-925 (1022)
138 1pzn_A RAD51, DNA repair and r 98.3 4E-08 1.4E-12 96.6 -3.4 31 131-161 129-161 (349)
139 1ewq_A DNA mismatch repair pro 98.2 2.8E-08 9.6E-13 106.9 -5.0 30 133-162 576-606 (765)
140 3lv8_A DTMP kinase, thymidylat 98.2 1.2E-05 4.1E-10 74.5 13.0 171 131-315 25-227 (236)
141 1lw7_A Transcriptional regulat 98.2 1.1E-07 3.9E-12 93.6 -0.9 29 133-161 170-198 (365)
142 3thx_B DNA mismatch repair pro 98.2 4.3E-08 1.5E-12 107.2 -4.4 54 251-312 750-804 (918)
143 2c95_A Adenylate kinase 1; tra 98.2 1.3E-05 4.3E-10 70.8 12.0 26 132-157 8-33 (196)
144 2yhs_A FTSY, cell division pro 98.2 7.3E-07 2.5E-11 90.9 4.1 71 130-205 290-370 (503)
145 3a8t_A Adenylate isopentenyltr 98.2 4.1E-06 1.4E-10 81.5 8.8 56 132-187 39-102 (339)
146 2gza_A Type IV secretion syste 98.2 2E-06 6.9E-11 84.7 6.6 57 130-187 172-231 (361)
147 3v9p_A DTMP kinase, thymidylat 98.2 8.1E-06 2.8E-10 75.2 10.2 171 131-314 23-224 (227)
148 3trf_A Shikimate kinase, SK; a 98.1 9.5E-06 3.3E-10 71.2 10.1 25 133-157 5-29 (185)
149 2vp4_A Deoxynucleoside kinase; 98.1 8E-06 2.7E-10 75.0 9.9 28 129-156 16-43 (230)
150 2v54_A DTMP kinase, thymidylat 98.1 1.4E-05 4.6E-10 71.2 11.1 26 132-157 3-28 (204)
151 2z0h_A DTMP kinase, thymidylat 98.1 1.9E-06 6.5E-11 76.3 5.4 60 254-315 130-190 (197)
152 4edh_A DTMP kinase, thymidylat 98.1 3.6E-05 1.2E-09 70.1 13.6 172 131-314 4-204 (213)
153 4e22_A Cytidylate kinase; P-lo 98.1 3.3E-06 1.1E-10 78.8 6.8 32 131-162 25-59 (252)
154 3kb2_A SPBC2 prophage-derived 98.1 5.4E-05 1.9E-09 65.1 13.8 24 134-157 2-25 (173)
155 2plr_A DTMP kinase, probable t 98.0 0.0001 3.4E-09 65.7 14.9 28 132-159 3-30 (213)
156 1nlf_A Regulatory protein REPA 98.0 4.6E-07 1.6E-11 85.7 -0.6 27 131-157 28-54 (279)
157 1nn5_A Similar to deoxythymidy 98.0 1.3E-05 4.4E-10 71.9 8.9 27 132-158 8-34 (215)
158 3cm0_A Adenylate kinase; ATP-b 98.0 0.00015 5.2E-09 63.3 15.1 26 132-157 3-28 (186)
159 1sq5_A Pantothenate kinase; P- 98.0 1.2E-06 4.2E-11 84.3 0.6 32 131-162 78-111 (308)
160 1puj_A YLQF, conserved hypothe 97.9 1.6E-05 5.6E-10 75.5 8.1 85 81-173 43-159 (282)
161 1qhx_A CPT, protein (chloramph 97.9 9.2E-05 3.1E-09 64.3 12.0 27 132-158 2-28 (178)
162 4i1u_A Dephospho-COA kinase; s 97.9 5E-06 1.7E-10 75.7 3.8 64 248-315 135-200 (210)
163 2bwj_A Adenylate kinase 5; pho 97.9 0.00011 3.8E-09 64.8 12.6 26 132-157 11-36 (199)
164 1ly1_A Polynucleotide kinase; 97.9 3.4E-05 1.2E-09 66.9 9.0 22 134-155 3-24 (181)
165 1zak_A Adenylate kinase; ATP:A 97.9 9.5E-06 3.2E-10 73.7 5.3 27 132-158 4-30 (222)
166 1ukz_A Uridylate kinase; trans 97.9 8.4E-05 2.9E-09 66.1 11.4 26 132-157 14-39 (203)
167 4tmk_A Protein (thymidylate ki 97.9 0.00022 7.4E-09 64.9 13.8 169 132-315 2-205 (213)
168 1qf9_A UMP/CMP kinase, protein 97.9 0.00078 2.7E-08 58.7 17.0 25 133-157 6-30 (194)
169 1ni3_A YCHF GTPase, YCHF GTP-b 97.9 9.7E-07 3.3E-11 87.9 -2.4 62 253-323 139-204 (392)
170 3ec1_A YQEH GTPase; atnos1, at 97.8 2.1E-05 7.2E-10 77.6 7.2 62 95-156 98-185 (369)
171 3exa_A TRNA delta(2)-isopenten 97.8 1.2E-05 4.1E-10 77.4 4.8 89 132-230 2-98 (322)
172 3h2y_A GTPase family protein; 97.8 1.9E-05 6.6E-10 77.9 6.4 63 95-157 96-184 (368)
173 1nks_A Adenylate kinase; therm 97.8 4.8E-05 1.6E-09 66.7 8.0 25 134-158 2-26 (194)
174 3c8u_A Fructokinase; YP_612366 97.8 7.1E-06 2.4E-10 74.0 2.6 29 131-159 20-48 (208)
175 2qag_C Septin-7; cell cycle, c 97.8 1E-06 3.6E-11 88.4 -3.3 24 136-159 34-57 (418)
176 2cdn_A Adenylate kinase; phosp 97.8 0.0012 4.3E-08 58.4 17.3 28 130-157 17-44 (201)
177 3eph_A TRNA isopentenyltransfe 97.8 1.3E-05 4.4E-10 79.8 4.3 69 133-201 2-78 (409)
178 1kht_A Adenylate kinase; phosp 97.8 0.00017 5.7E-09 63.1 11.1 26 132-157 2-27 (192)
179 2qag_B Septin-6, protein NEDD5 97.8 3.3E-06 1.1E-10 84.8 -0.2 68 129-205 36-105 (427)
180 2ewv_A Twitching motility prot 97.8 1.2E-05 4E-10 79.6 3.6 56 130-186 133-189 (372)
181 1jjv_A Dephospho-COA kinase; P 97.8 0.00018 6.3E-09 64.1 11.3 64 247-314 126-194 (206)
182 2qm8_A GTPase/ATPase; G protei 97.7 4.3E-06 1.5E-10 81.6 0.3 33 130-162 52-84 (337)
183 3gmt_A Adenylate kinase; ssgci 97.7 0.00044 1.5E-08 63.6 13.8 25 133-157 8-32 (230)
184 3nwj_A ATSK2; P loop, shikimat 97.7 0.00037 1.3E-08 65.0 13.3 25 133-157 48-72 (250)
185 3ld9_A DTMP kinase, thymidylat 97.7 6.5E-05 2.2E-09 68.9 7.9 43 130-172 18-60 (223)
186 2ze6_A Isopentenyl transferase 97.7 7.6E-05 2.6E-09 69.5 8.4 123 134-267 2-139 (253)
187 2xb4_A Adenylate kinase; ATP-b 97.7 0.00016 5.4E-09 65.8 10.3 23 135-157 2-24 (223)
188 2pbr_A DTMP kinase, thymidylat 97.7 0.0005 1.7E-08 60.2 13.2 65 247-315 125-190 (195)
189 1zd8_A GTP:AMP phosphotransfer 97.7 0.002 6.9E-08 58.4 17.4 26 132-157 6-31 (227)
190 4hlc_A DTMP kinase, thymidylat 97.7 0.00053 1.8E-08 61.9 12.8 26 133-158 2-27 (205)
191 1tev_A UMP-CMP kinase; ploop, 97.7 0.0023 7.9E-08 55.8 16.6 26 132-157 2-27 (196)
192 1qhl_A Protein (cell division 97.6 4.2E-06 1.4E-10 77.1 -1.6 29 134-162 28-56 (227)
193 3euj_A Chromosome partition pr 97.6 2.3E-05 7.9E-10 79.9 3.5 32 130-162 27-58 (483)
194 3be4_A Adenylate kinase; malar 97.6 0.0011 3.9E-08 59.7 14.5 26 132-157 4-29 (217)
195 3foz_A TRNA delta(2)-isopenten 97.6 2.5E-05 8.4E-10 75.1 3.3 59 132-190 9-75 (316)
196 3tmk_A Thymidylate kinase; pho 97.6 0.00049 1.7E-08 62.7 11.6 167 132-315 4-201 (216)
197 2wwf_A Thymidilate kinase, put 97.6 0.00018 6.1E-09 64.2 8.6 27 131-157 8-34 (212)
198 3zvl_A Bifunctional polynucleo 97.6 0.00013 4.3E-09 73.1 7.8 26 132-157 257-282 (416)
199 3uie_A Adenylyl-sulfate kinase 97.6 3E-05 1E-09 69.3 2.8 31 131-162 23-53 (200)
200 1e6c_A Shikimate kinase; phosp 97.5 0.00085 2.9E-08 57.7 12.1 24 134-157 3-26 (173)
201 1aky_A Adenylate kinase; ATP:A 97.5 0.00091 3.1E-08 60.3 12.8 26 132-157 3-28 (220)
202 2f6r_A COA synthase, bifunctio 97.5 0.00017 5.8E-09 68.3 8.1 65 247-315 202-267 (281)
203 1kag_A SKI, shikimate kinase I 97.5 4E-05 1.4E-09 66.3 3.2 27 132-158 3-29 (173)
204 2rhm_A Putative kinase; P-loop 97.5 0.00024 8.1E-09 62.3 7.7 26 132-157 4-29 (193)
205 1ak2_A Adenylate kinase isoenz 97.5 0.0047 1.6E-07 56.2 16.6 27 131-157 14-40 (233)
206 1mky_A Probable GTP-binding pr 97.4 0.00015 5.1E-09 73.0 6.7 79 93-172 108-218 (439)
207 2jaq_A Deoxyguanosine kinase; 97.4 0.0018 6.2E-08 57.0 12.8 24 135-158 2-25 (205)
208 2oap_1 GSPE-2, type II secreti 97.4 0.00014 4.8E-09 74.8 6.1 35 131-166 258-292 (511)
209 2pt5_A Shikimate kinase, SK; a 97.4 0.0014 4.9E-08 56.0 11.2 23 135-157 2-24 (168)
210 1p9r_A General secretion pathw 97.4 8.9E-05 3E-09 74.4 3.8 33 131-163 165-197 (418)
211 1pui_A ENGB, probable GTP-bind 97.4 7.4E-05 2.5E-09 66.5 3.0 30 128-157 21-50 (210)
212 1gtv_A TMK, thymidylate kinase 97.4 3.9E-05 1.4E-09 68.7 1.1 26 134-159 1-26 (214)
213 2f1r_A Molybdopterin-guanine d 97.3 3.1E-05 1.1E-09 68.1 0.2 27 134-160 3-29 (171)
214 1rz3_A Hypothetical protein rb 97.3 7.5E-05 2.6E-09 66.8 2.5 32 131-162 20-51 (201)
215 3ec2_A DNA replication protein 97.3 4.9E-05 1.7E-09 66.5 1.2 32 131-162 36-67 (180)
216 1ltq_A Polynucleotide kinase; 97.3 0.00093 3.2E-08 63.1 9.7 23 134-156 3-25 (301)
217 1zuh_A Shikimate kinase; alpha 97.3 0.0025 8.5E-08 54.7 11.6 24 134-157 8-31 (168)
218 3kta_A Chromosome segregation 97.3 0.00016 5.5E-09 63.1 3.8 30 132-162 26-55 (182)
219 3hjn_A DTMP kinase, thymidylat 97.2 0.0033 1.1E-07 56.2 12.4 166 135-315 2-190 (197)
220 2kjq_A DNAA-related protein; s 97.2 9.2E-05 3.2E-09 63.4 2.0 28 132-159 35-62 (149)
221 2iyv_A Shikimate kinase, SK; t 97.2 0.0037 1.3E-07 54.3 12.5 24 134-157 3-26 (184)
222 3crm_A TRNA delta(2)-isopenten 97.2 0.00018 6E-09 69.6 3.3 53 134-186 6-66 (323)
223 1e4v_A Adenylate kinase; trans 97.1 0.0067 2.3E-07 54.3 13.4 23 135-157 2-24 (214)
224 2qt1_A Nicotinamide riboside k 97.1 0.00023 7.9E-09 63.6 3.2 28 130-157 18-45 (207)
225 1cke_A CK, MSSA, protein (cyti 97.1 0.00021 7.2E-09 64.5 2.9 25 133-157 5-29 (227)
226 1nij_A Hypothetical protein YJ 97.1 0.00021 7.2E-09 68.8 2.9 24 134-157 5-28 (318)
227 2pez_A Bifunctional 3'-phospho 97.1 0.00025 8.4E-09 61.9 2.9 29 131-159 3-31 (179)
228 3hdt_A Putative kinase; struct 97.0 0.0024 8.2E-08 58.4 9.3 74 242-316 134-218 (223)
229 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.0035 1.2E-07 58.3 10.6 26 132-157 3-28 (260)
230 3tqc_A Pantothenate kinase; bi 97.0 0.00029 9.9E-09 68.1 3.0 25 134-158 93-117 (321)
231 2qnr_A Septin-2, protein NEDD5 97.0 0.0003 1E-08 67.2 2.9 27 136-162 21-48 (301)
232 1oix_A RAS-related protein RAB 96.9 0.00041 1.4E-08 61.1 3.2 25 135-159 31-55 (191)
233 3fdi_A Uncharacterized protein 96.9 0.014 4.9E-07 52.1 13.4 71 244-315 116-197 (201)
234 3cr8_A Sulfate adenylyltranfer 96.9 0.0002 6.9E-09 74.2 1.0 31 132-162 368-398 (552)
235 1ko7_A HPR kinase/phosphatase; 96.9 0.00091 3.1E-08 64.3 5.5 62 95-156 79-167 (314)
236 2px0_A Flagellar biosynthesis 96.9 0.00035 1.2E-08 66.8 2.4 32 132-163 104-135 (296)
237 1n0w_A DNA repair protein RAD5 96.8 0.00057 2E-08 62.1 3.4 26 131-156 22-47 (243)
238 1odf_A YGR205W, hypothetical 3 96.8 0.00048 1.7E-08 65.6 2.8 28 132-159 30-57 (290)
239 2f9l_A RAB11B, member RAS onco 96.8 0.00059 2E-08 60.3 3.1 23 135-157 7-29 (199)
240 1zu4_A FTSY; GTPase, signal re 96.8 0.00095 3.2E-08 64.5 4.7 33 130-162 102-134 (320)
241 3pih_A Uvrabc system protein A 96.8 2.1E-05 7E-10 86.1 -7.8 87 239-334 468-562 (916)
242 2if2_A Dephospho-COA kinase; a 96.8 0.00059 2E-08 60.6 3.0 64 247-315 126-190 (204)
243 2gj8_A MNME, tRNA modification 96.8 0.00072 2.5E-08 58.5 3.4 26 132-157 3-28 (172)
244 1ixz_A ATP-dependent metallopr 96.7 0.00036 1.2E-08 64.4 1.4 23 136-158 52-74 (254)
245 1m7g_A Adenylylsulfate kinase; 96.7 0.00049 1.7E-08 61.8 2.2 32 131-162 23-54 (211)
246 3d3q_A TRNA delta(2)-isopenten 96.7 0.0013 4.6E-08 63.9 5.2 53 134-186 8-68 (340)
247 2cvh_A DNA repair and recombin 96.7 0.0008 2.7E-08 60.1 3.4 25 131-155 18-42 (220)
248 2x8a_A Nuclear valosin-contain 96.7 0.00077 2.6E-08 63.5 3.1 24 136-159 47-70 (274)
249 1iy2_A ATP-dependent metallopr 96.7 0.00047 1.6E-08 64.7 1.4 23 136-158 76-98 (278)
250 2yvu_A Probable adenylyl-sulfa 96.7 0.0008 2.7E-08 58.9 2.9 29 131-159 11-39 (186)
251 2r6f_A Excinuclease ABC subuni 96.6 5.9E-05 2E-09 82.4 -5.5 86 239-333 508-601 (972)
252 1w1w_A Structural maintenance 96.6 0.00095 3.3E-08 66.8 3.6 29 132-160 25-53 (430)
253 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0011 3.8E-08 56.6 3.3 24 132-155 22-45 (149)
254 1np6_A Molybdopterin-guanine d 96.6 0.00091 3.1E-08 58.8 2.8 25 134-158 7-31 (174)
255 1vma_A Cell division protein F 96.6 0.00081 2.8E-08 64.5 2.6 32 131-162 102-133 (306)
256 1svm_A Large T antigen; AAA+ f 96.6 0.001 3.5E-08 65.7 3.4 28 130-157 166-193 (377)
257 2wji_A Ferrous iron transport 96.5 0.0011 3.8E-08 56.6 3.0 24 134-157 4-27 (165)
258 1y63_A LMAJ004144AAA protein; 96.5 0.0013 4.6E-08 57.6 3.3 26 131-156 8-33 (184)
259 2www_A Methylmalonic aciduria 96.5 0.0011 3.7E-08 64.7 2.9 29 132-160 73-101 (349)
260 1in4_A RUVB, holliday junction 96.5 0.0009 3.1E-08 64.7 2.2 25 133-157 51-75 (334)
261 3iij_A Coilin-interacting nucl 96.5 0.0012 4E-08 57.5 2.7 27 131-157 9-35 (180)
262 2hjg_A GTP-binding protein ENG 96.4 0.0018 6.3E-08 64.9 4.3 68 91-158 107-200 (436)
263 1via_A Shikimate kinase; struc 96.4 0.0014 4.7E-08 56.8 2.6 23 135-157 6-28 (175)
264 2zej_A Dardarin, leucine-rich 96.4 0.0015 5E-08 56.9 2.8 23 135-157 4-26 (184)
265 1vht_A Dephospho-COA kinase; s 96.4 0.0018 6.2E-08 58.2 3.3 64 247-314 128-192 (218)
266 2p5t_B PEZT; postsegregational 96.3 0.0012 4.3E-08 61.0 2.2 28 131-158 30-57 (253)
267 2vli_A Antibiotic resistance p 96.3 0.0015 5E-08 56.7 2.5 26 132-157 4-29 (183)
268 3lxx_A GTPase IMAP family memb 96.3 0.0024 8.1E-08 58.3 3.9 29 134-162 30-58 (239)
269 2wjg_A FEOB, ferrous iron tran 96.3 0.0019 6.6E-08 55.8 3.1 24 133-156 7-30 (188)
270 1uf9_A TT1252 protein; P-loop, 96.2 0.0022 7.4E-08 56.5 3.1 65 247-315 127-192 (203)
271 3m6a_A ATP-dependent protease 96.2 0.0021 7E-08 66.5 3.3 31 132-162 107-137 (543)
272 2o5v_A DNA replication and rep 96.2 0.0019 6.3E-08 63.4 2.7 64 252-330 291-354 (359)
273 1q3t_A Cytidylate kinase; nucl 96.2 0.0025 8.7E-08 58.1 3.4 27 131-157 14-40 (236)
274 3r20_A Cytidylate kinase; stru 96.2 0.0022 7.7E-08 59.0 2.9 26 132-157 8-33 (233)
275 3k1j_A LON protease, ATP-depen 96.1 0.0049 1.7E-07 64.5 5.7 34 132-165 59-92 (604)
276 2vf7_A UVRA2, excinuclease ABC 96.1 0.00017 5.9E-09 78.2 -5.6 85 241-334 385-477 (842)
277 1ega_A Protein (GTP-binding pr 96.1 0.002 6.8E-08 61.4 2.4 26 132-157 7-32 (301)
278 1ls1_A Signal recognition part 96.1 0.0025 8.4E-08 60.7 3.0 31 132-162 97-127 (295)
279 1xjc_A MOBB protein homolog; s 96.1 0.0026 9E-08 55.6 2.8 25 134-158 5-29 (169)
280 3lda_A DNA repair protein RAD5 96.1 0.0032 1.1E-07 62.7 3.7 29 131-159 176-206 (400)
281 3qks_A DNA double-strand break 96.0 0.0032 1.1E-07 56.4 3.3 24 132-155 22-45 (203)
282 1udx_A The GTP-binding protein 96.0 0.0024 8.1E-08 63.9 2.2 28 131-158 155-182 (416)
283 2ygr_A Uvrabc system protein A 95.9 0.00013 4.4E-09 80.0 -7.7 85 240-333 526-618 (993)
284 2dr3_A UPF0273 protein PH0284; 95.9 0.0041 1.4E-07 56.3 3.5 26 131-156 21-46 (247)
285 3qkt_A DNA double-strand break 95.9 0.0038 1.3E-07 60.5 3.3 60 249-317 268-327 (339)
286 2p67_A LAO/AO transport system 95.9 0.0029 9.9E-08 61.4 2.4 29 131-159 54-82 (341)
287 3ake_A Cytidylate kinase; CMP 95.9 0.0037 1.3E-07 55.2 2.7 66 247-314 138-206 (208)
288 4dcu_A GTP-binding protein ENG 95.8 0.01 3.5E-07 59.8 6.2 68 91-158 127-220 (456)
289 1a7j_A Phosphoribulokinase; tr 95.8 0.0028 9.7E-08 60.1 1.7 26 132-157 4-29 (290)
290 1sxj_E Activator 1 40 kDa subu 95.7 0.0049 1.7E-07 59.3 3.2 27 136-162 39-66 (354)
291 1z2a_A RAS-related protein RAB 95.7 0.005 1.7E-07 51.8 2.8 23 135-157 7-29 (168)
292 2ged_A SR-beta, signal recogni 95.7 0.005 1.7E-07 53.5 2.9 26 132-157 47-72 (193)
293 2nzj_A GTP-binding protein REM 95.7 0.0051 1.7E-07 52.2 2.8 23 135-157 6-28 (175)
294 2dyk_A GTP-binding protein; GT 95.6 0.0054 1.8E-07 51.3 2.9 23 135-157 3-25 (161)
295 1kao_A RAP2A; GTP-binding prot 95.6 0.0054 1.8E-07 51.3 2.9 23 135-157 5-27 (167)
296 3q72_A GTP-binding protein RAD 95.6 0.0046 1.6E-07 52.1 2.4 23 135-157 4-26 (166)
297 3k53_A Ferrous iron transport 95.6 0.005 1.7E-07 57.4 2.8 24 134-157 4-27 (271)
298 2ce2_X GTPase HRAS; signaling 95.6 0.0052 1.8E-07 51.3 2.6 23 135-157 5-27 (166)
299 1uj2_A Uridine-cytidine kinase 95.6 0.0063 2.2E-07 56.1 3.3 26 133-158 22-47 (252)
300 2erx_A GTP-binding protein DI- 95.6 0.006 2.1E-07 51.4 2.9 22 135-156 5-26 (172)
301 2lkc_A Translation initiation 95.6 0.0076 2.6E-07 51.3 3.6 26 132-157 7-32 (178)
302 3lxw_A GTPase IMAP family memb 95.6 0.0073 2.5E-07 55.7 3.7 26 134-159 22-47 (247)
303 2gks_A Bifunctional SAT/APS ki 95.6 0.019 6.6E-07 59.3 7.2 26 132-157 371-396 (546)
304 1u8z_A RAS-related protein RAL 95.5 0.0061 2.1E-07 51.0 2.8 24 134-157 5-28 (168)
305 2grj_A Dephospho-COA kinase; T 95.5 0.0061 2.1E-07 54.3 2.9 25 132-156 11-35 (192)
306 1ek0_A Protein (GTP-binding pr 95.5 0.0062 2.1E-07 51.2 2.8 23 135-157 5-27 (170)
307 3q85_A GTP-binding protein REM 95.5 0.0061 2.1E-07 51.5 2.8 23 135-157 4-26 (169)
308 1f2t_B RAD50 ABC-ATPase; DNA d 95.5 0.00012 4.1E-09 62.8 -8.1 59 249-316 77-135 (148)
309 1z08_A RAS-related protein RAB 95.5 0.0065 2.2E-07 51.2 2.9 23 135-157 8-30 (170)
310 1z0j_A RAB-22, RAS-related pro 95.5 0.0065 2.2E-07 51.2 2.9 23 135-157 8-30 (170)
311 1lv7_A FTSH; alpha/beta domain 95.5 0.0072 2.5E-07 55.6 3.4 26 133-158 45-70 (257)
312 1wms_A RAB-9, RAB9, RAS-relate 95.5 0.0065 2.2E-07 51.7 2.9 23 135-157 9-31 (177)
313 1g16_A RAS-related protein SEC 95.5 0.0059 2E-07 51.4 2.6 23 135-157 5-27 (170)
314 1ky3_A GTP-binding protein YPT 95.5 0.0065 2.2E-07 51.8 2.9 23 135-157 10-32 (182)
315 3tw8_B RAS-related protein RAB 95.5 0.0063 2.2E-07 51.8 2.7 23 135-157 11-33 (181)
316 1c1y_A RAS-related protein RAP 95.5 0.0067 2.3E-07 50.9 2.8 22 135-156 5-26 (167)
317 3pqc_A Probable GTP-binding pr 95.4 0.0079 2.7E-07 52.0 3.2 24 134-157 24-47 (195)
318 2qmh_A HPR kinase/phosphorylas 95.4 0.0077 2.6E-07 54.1 3.1 27 131-157 32-58 (205)
319 2fn4_A P23, RAS-related protei 95.4 0.0067 2.3E-07 51.7 2.6 23 134-156 10-32 (181)
320 3clv_A RAB5 protein, putative; 95.4 0.0072 2.5E-07 52.3 2.9 23 135-157 9-31 (208)
321 1r2q_A RAS-related protein RAB 95.4 0.0076 2.6E-07 50.7 2.8 22 135-156 8-29 (170)
322 1fzq_A ADP-ribosylation factor 95.4 0.0065 2.2E-07 52.6 2.4 24 133-156 16-39 (181)
323 1svi_A GTP-binding protein YSX 95.3 0.0066 2.2E-07 52.7 2.4 26 132-157 22-47 (195)
324 3bos_A Putative DNA replicatio 95.3 0.0091 3.1E-07 53.5 3.4 27 132-158 51-77 (242)
325 4dsu_A GTPase KRAS, isoform 2B 95.3 0.0079 2.7E-07 51.7 2.9 23 135-157 6-28 (189)
326 3cf0_A Transitional endoplasmi 95.3 0.009 3.1E-07 56.6 3.5 28 131-158 47-74 (301)
327 1r8s_A ADP-ribosylation factor 95.3 0.008 2.8E-07 50.4 2.8 23 135-157 2-24 (164)
328 1sxj_C Activator 1 40 kDa subu 95.3 0.0067 2.3E-07 58.4 2.6 23 136-158 49-71 (340)
329 3bc1_A RAS-related protein RAB 95.3 0.0079 2.7E-07 51.8 2.8 22 135-156 13-34 (195)
330 1upt_A ARL1, ADP-ribosylation 95.3 0.0082 2.8E-07 50.6 2.8 24 134-157 8-31 (171)
331 3hr8_A Protein RECA; alpha and 95.3 0.0083 2.8E-07 58.7 3.2 32 131-162 59-90 (356)
332 2oil_A CATX-8, RAS-related pro 95.3 0.0082 2.8E-07 52.2 2.8 23 135-157 27-49 (193)
333 1p5z_B DCK, deoxycytidine kina 95.3 0.0091 3.1E-07 55.3 3.3 28 131-158 22-49 (263)
334 1jbk_A CLPB protein; beta barr 95.3 0.01 3.6E-07 50.7 3.4 26 132-157 42-67 (195)
335 2hxs_A RAB-26, RAS-related pro 95.3 0.0089 3E-07 50.9 3.0 23 135-157 8-30 (178)
336 2cxx_A Probable GTP-binding pr 95.3 0.0072 2.5E-07 52.1 2.3 23 135-157 3-25 (190)
337 1wf3_A GTP-binding protein; GT 95.2 0.011 3.7E-07 56.3 3.8 24 134-157 8-31 (301)
338 3t34_A Dynamin-related protein 95.2 0.0097 3.3E-07 57.9 3.5 22 135-156 36-57 (360)
339 1f6b_A SAR1; gtpases, N-termin 95.2 0.0064 2.2E-07 53.6 1.9 23 134-156 26-48 (198)
340 3iev_A GTP-binding protein ERA 95.2 0.012 4E-07 56.2 3.9 25 133-157 10-34 (308)
341 2y8e_A RAB-protein 6, GH09086P 95.2 0.0083 2.8E-07 51.0 2.6 23 134-156 15-37 (179)
342 1moz_A ARL1, ADP-ribosylation 95.2 0.0065 2.2E-07 52.1 1.9 24 132-155 17-40 (183)
343 2qtf_A Protein HFLX, GTP-bindi 95.2 0.0082 2.8E-07 58.9 2.8 24 135-158 181-204 (364)
344 3ihw_A Centg3; RAS, centaurin, 95.2 0.0094 3.2E-07 51.8 2.9 23 134-156 21-43 (184)
345 2ocp_A DGK, deoxyguanosine kin 95.2 0.0098 3.4E-07 54.3 3.1 27 132-158 1-27 (241)
346 3b1v_A Ferrous iron uptake tra 95.2 0.0094 3.2E-07 56.0 3.0 24 134-157 4-27 (272)
347 3t1o_A Gliding protein MGLA; G 95.2 0.01 3.5E-07 51.3 3.1 25 135-159 16-40 (198)
348 2g6b_A RAS-related protein RAB 95.2 0.0094 3.2E-07 50.8 2.8 23 135-157 12-34 (180)
349 1m2o_B GTP-binding protein SAR 95.2 0.0086 3E-07 52.3 2.6 25 133-157 23-47 (190)
350 3con_A GTPase NRAS; structural 95.1 0.0095 3.3E-07 51.5 2.8 24 134-157 22-45 (190)
351 3cbq_A GTP-binding protein REM 95.1 0.0087 3E-07 52.6 2.6 24 134-157 24-47 (195)
352 1z0f_A RAB14, member RAS oncog 95.1 0.0098 3.4E-07 50.5 2.8 24 134-157 16-39 (179)
353 2a9k_A RAS-related protein RAL 95.1 0.0099 3.4E-07 50.8 2.8 24 134-157 19-42 (187)
354 2efe_B Small GTP-binding prote 95.1 0.01 3.5E-07 50.6 2.9 23 135-157 14-36 (181)
355 3b9p_A CG5977-PA, isoform A; A 95.1 0.012 3.9E-07 55.3 3.4 27 132-158 53-79 (297)
356 1nrj_B SR-beta, signal recogni 95.1 0.01 3.4E-07 52.8 2.8 24 134-157 13-36 (218)
357 2bme_A RAB4A, RAS-related prot 95.1 0.0097 3.3E-07 51.1 2.6 23 135-157 12-34 (186)
358 2w58_A DNAI, primosome compone 95.0 0.012 4.3E-07 51.7 3.3 24 134-157 55-78 (202)
359 2cjw_A GTP-binding protein GEM 95.0 0.011 3.6E-07 51.9 2.8 22 135-156 8-29 (192)
360 2ga8_A Hypothetical 39.9 kDa p 95.0 0.0098 3.3E-07 58.1 2.7 28 132-159 21-50 (359)
361 2h92_A Cytidylate kinase; ross 95.0 0.011 3.8E-07 52.7 3.0 25 133-157 3-27 (219)
362 2gf9_A RAS-related protein RAB 95.0 0.011 3.8E-07 51.2 2.8 23 135-157 24-46 (189)
363 2bov_A RAla, RAS-related prote 95.0 0.011 3.8E-07 51.6 2.8 24 134-157 15-38 (206)
364 3tkl_A RAS-related protein RAB 95.0 0.011 3.9E-07 51.1 2.8 23 135-157 18-40 (196)
365 1ksh_A ARF-like protein 2; sma 95.0 0.012 4E-07 50.8 2.8 26 132-157 17-42 (186)
366 1m7b_A RND3/RHOE small GTP-bin 95.0 0.011 3.7E-07 51.1 2.6 23 135-157 9-31 (184)
367 1mh1_A RAC1; GTP-binding, GTPa 94.9 0.012 4E-07 50.4 2.8 22 135-156 7-28 (186)
368 3kkq_A RAS-related protein M-R 94.9 0.012 4.1E-07 50.5 2.8 23 134-156 19-41 (183)
369 1vg8_A RAS-related protein RAB 94.9 0.012 4.1E-07 51.5 2.9 24 134-157 9-32 (207)
370 1z06_A RAS-related protein RAB 94.9 0.012 4.2E-07 50.9 2.9 24 134-157 21-44 (189)
371 3iby_A Ferrous iron transport 94.9 0.012 4.2E-07 54.6 2.9 23 135-157 3-25 (256)
372 2fg5_A RAB-22B, RAS-related pr 94.9 0.012 4E-07 51.4 2.6 23 135-157 25-47 (192)
373 1j8m_F SRP54, signal recogniti 94.9 0.011 3.9E-07 56.1 2.8 29 132-160 97-125 (297)
374 2ffh_A Protein (FFH); SRP54, s 94.9 0.016 5.4E-07 58.0 3.9 31 132-162 97-127 (425)
375 2gf0_A GTP-binding protein DI- 94.9 0.012 4.1E-07 51.1 2.6 23 134-156 9-31 (199)
376 1zbd_A Rabphilin-3A; G protein 94.8 0.013 4.4E-07 51.3 2.8 23 135-157 10-32 (203)
377 2a5j_A RAS-related protein RAB 94.8 0.013 4.5E-07 50.9 2.8 23 135-157 23-45 (191)
378 2h57_A ADP-ribosylation factor 94.8 0.011 3.9E-07 51.2 2.4 26 132-157 20-45 (190)
379 2qu8_A Putative nucleolar GTP- 94.8 0.013 4.4E-07 52.8 2.8 26 132-157 28-53 (228)
380 2wsm_A Hydrogenase expression/ 94.8 0.013 4.5E-07 52.1 2.9 24 134-157 31-54 (221)
381 4bas_A ADP-ribosylation factor 94.8 0.013 4.4E-07 50.9 2.7 26 132-157 16-41 (199)
382 3t5g_A GTP-binding protein RHE 94.8 0.012 4.3E-07 50.3 2.6 22 135-156 8-29 (181)
383 2il1_A RAB12; G-protein, GDP, 94.8 0.012 4.3E-07 51.2 2.6 23 135-157 28-50 (192)
384 3dz8_A RAS-related protein RAB 94.8 0.012 4.2E-07 51.0 2.6 23 135-157 25-47 (191)
385 3t5d_A Septin-7; GTP-binding p 94.8 0.011 3.9E-07 55.1 2.5 23 135-157 10-32 (274)
386 2xtp_A GTPase IMAP family memb 94.8 0.014 4.7E-07 53.8 2.9 25 133-157 22-46 (260)
387 3bwd_D RAC-like GTP-binding pr 94.8 0.014 4.8E-07 49.8 2.8 24 134-157 9-32 (182)
388 3oes_A GTPase rhebl1; small GT 94.8 0.013 4.3E-07 51.5 2.6 25 133-157 24-48 (201)
389 2p65_A Hypothetical protein PF 94.8 0.013 4.3E-07 50.2 2.5 25 133-157 43-67 (187)
390 2ohf_A Protein OLA1, GTP-bindi 94.8 0.013 4.5E-07 58.0 3.0 27 131-157 20-46 (396)
391 2e87_A Hypothetical protein PH 94.8 0.014 4.8E-07 56.7 3.1 26 132-157 166-191 (357)
392 2iwr_A Centaurin gamma 1; ANK 94.7 0.011 3.7E-07 50.5 2.0 24 134-157 8-31 (178)
393 2atv_A RERG, RAS-like estrogen 94.7 0.014 4.9E-07 50.9 2.9 25 133-157 28-52 (196)
394 1x3s_A RAS-related protein RAB 94.7 0.014 4.9E-07 50.4 2.8 24 134-157 16-39 (195)
395 1zd9_A ADP-ribosylation factor 94.7 0.014 4.9E-07 50.6 2.8 24 134-157 23-46 (188)
396 2dhr_A FTSH; AAA+ protein, hex 94.7 0.0098 3.3E-07 60.8 1.9 24 135-158 66-89 (499)
397 3c5c_A RAS-like protein 12; GD 94.7 0.015 5E-07 50.6 2.9 24 134-157 22-45 (187)
398 2bcg_Y Protein YP2, GTP-bindin 94.7 0.013 4.6E-07 51.4 2.6 23 135-157 10-32 (206)
399 2p5s_A RAS and EF-hand domain 94.7 0.015 5E-07 51.0 2.8 25 133-157 28-52 (199)
400 2qag_A Septin-2, protein NEDD5 94.7 0.012 4E-07 57.6 2.3 23 136-158 40-62 (361)
401 3reg_A RHO-like small GTPase; 94.7 0.015 5.2E-07 50.5 2.8 24 134-157 24-47 (194)
402 2ew1_A RAS-related protein RAB 94.7 0.014 4.8E-07 51.7 2.6 23 135-157 28-50 (201)
403 1jal_A YCHF protein; nucleotid 94.7 0.021 7.3E-07 55.9 4.1 25 133-157 2-26 (363)
404 3cph_A RAS-related protein SEC 94.7 0.015 5.2E-07 51.1 2.8 25 133-157 20-44 (213)
405 2o52_A RAS-related protein RAB 94.7 0.014 4.7E-07 51.4 2.5 23 135-157 27-49 (200)
406 3kl4_A SRP54, signal recogniti 94.7 0.012 4E-07 59.2 2.2 28 132-159 96-123 (433)
407 1zj6_A ADP-ribosylation factor 94.6 0.015 5E-07 50.3 2.6 25 133-157 16-40 (187)
408 1ypw_A Transitional endoplasmi 94.6 0.015 5.3E-07 62.8 3.3 29 131-159 236-264 (806)
409 3h4m_A Proteasome-activating n 94.6 0.018 6.2E-07 53.5 3.4 27 132-158 50-76 (285)
410 3tqf_A HPR(Ser) kinase; transf 94.6 0.016 5.5E-07 50.8 2.7 25 131-155 14-38 (181)
411 2h17_A ADP-ribosylation factor 94.6 0.013 4.4E-07 50.5 2.2 26 132-157 20-45 (181)
412 3llu_A RAS-related GTP-binding 94.6 0.016 5.6E-07 50.6 2.8 28 132-159 19-46 (196)
413 3auy_A DNA double-strand break 94.6 0.017 5.7E-07 56.6 3.1 24 131-154 23-46 (371)
414 2qby_A CDC6 homolog 1, cell di 94.6 0.016 5.4E-07 55.8 2.9 29 131-159 43-71 (386)
415 2fh5_B SR-beta, signal recogni 94.5 0.017 5.7E-07 51.1 2.8 24 134-157 8-31 (214)
416 4fcw_A Chaperone protein CLPB; 94.5 0.015 5.2E-07 54.7 2.7 27 133-159 47-73 (311)
417 4djt_A GTP-binding nuclear pro 94.5 0.013 4.5E-07 51.9 2.1 23 135-157 13-35 (218)
418 3a1s_A Iron(II) transport prot 94.5 0.018 6.2E-07 53.4 3.1 23 135-157 7-29 (258)
419 2fv8_A H6, RHO-related GTP-bin 94.5 0.016 5.6E-07 51.1 2.6 25 133-157 25-49 (207)
420 2f7s_A C25KG, RAS-related prot 94.5 0.017 6E-07 51.1 2.8 23 135-157 27-49 (217)
421 2fu5_C RAS-related protein RAB 94.5 0.012 4.1E-07 50.5 1.7 22 135-156 10-31 (183)
422 1fnn_A CDC6P, cell division co 94.5 0.019 6.4E-07 55.6 3.2 25 135-159 46-70 (389)
423 1gwn_A RHO-related GTP-binding 94.5 0.016 5.6E-07 51.4 2.6 24 134-157 29-52 (205)
424 1l8q_A Chromosomal replication 94.5 0.017 5.9E-07 55.0 2.9 26 132-157 36-61 (324)
425 2q3h_A RAS homolog gene family 94.4 0.018 6.1E-07 50.3 2.8 25 133-157 20-44 (201)
426 1njg_A DNA polymerase III subu 94.4 0.022 7.4E-07 50.5 3.3 25 134-158 46-70 (250)
427 4dhe_A Probable GTP-binding pr 94.4 0.009 3.1E-07 53.2 0.8 26 132-157 28-53 (223)
428 4ad8_A DNA repair protein RECN 94.4 0.0011 3.8E-08 68.1 -6.1 61 249-319 411-473 (517)
429 2j1l_A RHO-related GTP-binding 94.4 0.018 6.1E-07 51.3 2.6 23 134-156 35-57 (214)
430 2hf9_A Probable hydrogenase ni 94.4 0.019 6.6E-07 51.3 2.8 24 134-157 39-62 (226)
431 2qz4_A Paraplegin; AAA+, SPG7, 94.3 0.024 8.3E-07 51.7 3.5 27 132-158 38-64 (262)
432 2b6h_A ADP-ribosylation factor 94.3 0.017 5.9E-07 50.4 2.4 25 132-156 28-52 (192)
433 3i8s_A Ferrous iron transport 94.3 0.02 6.9E-07 53.5 2.9 24 134-157 4-27 (274)
434 2g3y_A GTP-binding protein GEM 94.3 0.02 7E-07 51.4 2.8 23 134-156 38-60 (211)
435 3ice_A Transcription terminati 94.3 0.023 8E-07 56.1 3.4 27 131-157 172-198 (422)
436 2atx_A Small GTP binding prote 94.3 0.02 6.8E-07 49.7 2.6 22 135-156 20-41 (194)
437 1h65_A Chloroplast outer envel 94.2 0.021 7.2E-07 53.1 2.8 24 134-157 40-63 (270)
438 1sky_E F1-ATPase, F1-ATP synth 94.2 0.024 8.3E-07 57.3 3.4 28 131-158 149-176 (473)
439 2dby_A GTP-binding protein; GD 94.2 0.02 7E-07 56.1 2.8 23 135-157 3-25 (368)
440 2gco_A H9, RHO-related GTP-bin 94.2 0.021 7.1E-07 50.2 2.6 24 134-157 26-49 (201)
441 1jwy_B Dynamin A GTPase domain 94.2 0.022 7.4E-07 53.9 2.8 24 134-157 25-48 (315)
442 3def_A T7I23.11 protein; chlor 94.1 0.03 1E-06 51.8 3.7 24 134-157 37-60 (262)
443 2zr9_A Protein RECA, recombina 94.1 0.027 9.3E-07 54.8 3.4 27 131-157 59-85 (349)
444 3n70_A Transport activator; si 94.1 0.029 9.9E-07 47.0 3.1 26 132-157 23-48 (145)
445 3cpj_B GTP-binding protein YPT 94.0 0.025 8.5E-07 50.6 2.9 23 135-157 15-37 (223)
446 2x77_A ADP-ribosylation factor 94.0 0.018 6.2E-07 49.7 1.9 24 133-156 22-45 (189)
447 1knx_A Probable HPR(Ser) kinas 94.0 0.079 2.7E-06 50.7 6.4 25 131-155 145-169 (312)
448 2aka_B Dynamin-1; fusion prote 94.0 0.022 7.4E-07 53.3 2.5 25 133-157 26-50 (299)
449 2hup_A RAS-related protein RAB 94.0 0.025 8.4E-07 49.8 2.6 23 135-157 31-53 (201)
450 4ag6_A VIRB4 ATPase, type IV s 94.0 0.027 9.3E-07 55.3 3.2 28 132-159 34-61 (392)
451 3q3j_B RHO-related GTP-binding 93.9 0.027 9.4E-07 50.1 2.8 24 133-156 27-50 (214)
452 3llm_A ATP-dependent RNA helic 93.9 0.032 1.1E-06 50.6 3.3 25 131-155 74-98 (235)
453 4gzl_A RAS-related C3 botulinu 93.8 0.026 9E-07 49.7 2.6 24 133-156 30-53 (204)
454 2yc2_C IFT27, small RAB-relate 93.8 0.012 4.2E-07 51.4 0.4 23 134-156 21-43 (208)
455 3syl_A Protein CBBX; photosynt 93.8 0.029 9.8E-07 52.7 2.9 26 132-157 66-91 (309)
456 2j0v_A RAC-like GTP-binding pr 93.7 0.028 9.5E-07 49.6 2.6 24 134-157 10-33 (212)
457 3hws_A ATP-dependent CLP prote 93.6 0.033 1.1E-06 54.0 3.1 27 132-158 50-76 (363)
458 2chg_A Replication factor C sm 93.6 0.036 1.2E-06 48.4 3.1 23 135-157 40-62 (226)
459 3gj0_A GTP-binding nuclear pro 93.5 0.028 9.7E-07 50.0 2.2 21 134-154 16-36 (221)
460 1x6v_B Bifunctional 3'-phospho 93.5 0.034 1.2E-06 58.3 3.1 27 131-157 50-76 (630)
461 3co5_A Putative two-component 93.5 0.035 1.2E-06 46.4 2.6 26 132-157 26-51 (143)
462 3t15_A Ribulose bisphosphate c 93.4 0.041 1.4E-06 51.9 3.3 26 132-157 35-60 (293)
463 3l0i_B RAS-related protein RAB 93.4 0.014 4.7E-07 51.2 -0.1 23 135-157 35-57 (199)
464 2z4s_A Chromosomal replication 93.4 0.034 1.2E-06 55.8 2.8 25 133-157 130-154 (440)
465 1xwi_A SKD1 protein; VPS4B, AA 93.4 0.044 1.5E-06 52.5 3.4 26 132-157 44-69 (322)
466 1g8f_A Sulfate adenylyltransfe 93.3 0.03 1E-06 57.3 2.3 27 132-158 394-420 (511)
467 1ofh_A ATP-dependent HSL prote 93.3 0.042 1.4E-06 51.3 3.1 27 132-158 49-75 (310)
468 2dy1_A Elongation factor G; tr 93.3 0.034 1.2E-06 58.8 2.7 28 131-158 7-34 (665)
469 4dcu_A GTP-binding protein ENG 93.3 0.034 1.2E-06 55.9 2.6 25 133-157 23-47 (456)
470 3uk6_A RUVB-like 2; hexameric 93.2 0.038 1.3E-06 53.2 2.7 27 132-158 69-95 (368)
471 2r6a_A DNAB helicase, replicat 93.2 0.038 1.3E-06 55.5 2.8 29 131-159 201-229 (454)
472 2ce7_A Cell division protein F 93.2 0.046 1.6E-06 55.5 3.3 26 133-158 49-74 (476)
473 3r7w_A Gtpase1, GTP-binding pr 93.2 0.047 1.6E-06 51.9 3.3 26 133-158 3-28 (307)
474 2orw_A Thymidine kinase; TMTK, 93.1 0.05 1.7E-06 47.8 3.2 24 132-155 2-25 (184)
475 2hjg_A GTP-binding protein ENG 93.1 0.041 1.4E-06 55.0 2.9 24 135-158 5-28 (436)
476 1v5w_A DMC1, meiotic recombina 93.1 0.048 1.6E-06 52.8 3.2 26 131-156 120-145 (343)
477 2r62_A Cell division protease 93.1 0.023 7.8E-07 52.4 0.9 25 134-158 45-69 (268)
478 2v1u_A Cell division control p 93.0 0.039 1.3E-06 53.1 2.5 26 132-157 43-68 (387)
479 1d2n_A N-ethylmaleimide-sensit 93.0 0.042 1.4E-06 50.8 2.6 26 132-157 63-88 (272)
480 1wxq_A GTP-binding protein; st 93.0 0.042 1.4E-06 54.4 2.7 23 135-157 2-24 (397)
481 3p32_A Probable GTPase RV1496/ 92.9 0.052 1.8E-06 52.7 3.2 26 132-157 78-103 (355)
482 2qgz_A Helicase loader, putati 92.9 0.057 1.9E-06 51.4 3.4 25 133-157 152-176 (308)
483 3gee_A MNME, tRNA modification 92.9 0.045 1.5E-06 55.5 2.8 25 133-157 233-257 (476)
484 4ad8_A DNA repair protein RECN 92.8 0.019 6.6E-07 58.7 0.0 24 132-156 60-83 (517)
485 3dm5_A SRP54, signal recogniti 92.8 0.046 1.6E-06 54.9 2.8 27 132-158 99-125 (443)
486 3eie_A Vacuolar protein sortin 92.8 0.059 2E-06 51.4 3.4 26 132-157 50-75 (322)
487 3th5_A RAS-related C3 botulinu 91.9 0.02 6.8E-07 50.3 0.0 23 134-156 31-53 (204)
488 2v3c_C SRP54, signal recogniti 92.8 0.039 1.3E-06 55.3 2.1 26 133-158 99-124 (432)
489 3geh_A MNME, tRNA modification 92.7 0.039 1.3E-06 55.8 2.1 26 132-157 223-248 (462)
490 3d8b_A Fidgetin-like protein 1 92.7 0.061 2.1E-06 52.2 3.4 27 132-158 116-142 (357)
491 1m8p_A Sulfate adenylyltransfe 92.7 0.048 1.7E-06 56.6 2.8 26 132-157 395-420 (573)
492 1sxj_D Activator 1 41 kDa subu 92.7 0.052 1.8E-06 51.8 2.8 22 136-157 61-82 (353)
493 1um8_A ATP-dependent CLP prote 92.7 0.057 1.9E-06 52.5 3.1 27 132-158 71-97 (376)
494 2z43_A DNA repair and recombin 92.5 0.062 2.1E-06 51.4 3.1 26 131-156 105-130 (324)
495 3qkt_A DNA double-strand break 92.5 0.0017 5.9E-08 62.9 -8.0 23 132-154 22-44 (339)
496 1mky_A Probable GTP-binding pr 92.5 0.06 2E-06 53.8 3.0 23 135-157 3-25 (439)
497 2x2e_A Dynamin-1; nitration, h 92.4 0.052 1.8E-06 52.6 2.5 24 134-157 32-55 (353)
498 1f5n_A Interferon-induced guan 92.4 0.074 2.5E-06 55.4 3.7 24 134-157 39-62 (592)
499 2bjv_A PSP operon transcriptio 92.3 0.078 2.7E-06 48.7 3.4 26 133-158 29-54 (265)
500 3pfi_A Holliday junction ATP-d 92.2 0.072 2.5E-06 50.7 3.2 26 133-158 55-80 (338)
No 1
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.96 E-value=1.6e-29 Score=228.26 Aligned_cols=182 Identities=48% Similarity=0.849 Sum_probs=167.4
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTS 213 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~ 213 (399)
++++|+||||||||||++.|....+..++..++||||+++.++.+|..|+|.+.+.|..++..+.|+|+..+.+++||++
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~ 81 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence 67999999999999999999988876777799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCceEEecchhhHHHHHcCCc-ceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCC
Q 015825 214 VEAVEAVADAGKRCILDIDVQGARSVRASPL-DAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSG 292 (399)
Q Consensus 214 ~~~i~~~~~~g~~~vldld~~g~~~l~~~~~-~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~ 292 (399)
.+.+...+..|..+++++++++++.++.... ..+.+|+.+|+++.|.+|+.+|+.++.+.+++||..+..++.+.. ..
T Consensus 82 ~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~~-~~ 160 (186)
T 1ex7_A 82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAE-TG 160 (186)
T ss_dssp HHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred cceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcc-cc
Confidence 9999999999999999999999999987654 788899999999999999999999999999999999888876542 34
Q ss_pred cceEEEeCCCHHHHHHHHHHhhcc
Q 015825 293 IFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 293 ~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.||+||+|+|+++|+..+..++..
T Consensus 161 ~fD~vIvNddle~a~~~l~~iI~a 184 (186)
T 1ex7_A 161 AHDKVIVNDDLDKAYKELKDFIFA 184 (186)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT
T ss_pred CCcEEEECcCHHHHHHHHHHHHHh
Confidence 689999999999999999987754
No 2
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.94 E-value=4.4e-27 Score=227.92 Aligned_cols=156 Identities=22% Similarity=0.301 Sum_probs=118.5
Q ss_pred CCCceeccEEEEEecC-CeeEEEEeeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhhhccCCCceEEEE
Q 015825 30 ETTTVIGDKTYVIAGS-DESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCLWF 102 (399)
Q Consensus 30 ~~~~~vGD~v~~~~~~-~~~~i~~i~~r~~~~l~rp~~an~~------~~~~p~~~~~~l~~dr~L~~~~~~~~~~~i~~ 102 (399)
+..|+|||||.|+..+ ++|+|++|+|| +|.|+||.+||+| ++..|.++..+| ||||++++..+++|+|++
T Consensus 48 ~~~~~vGD~V~~~~~~~~~~~i~~i~~R-~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i--~r~L~~~~~~~~~~vivl 124 (307)
T 1t9h_A 48 KITPLVGDYVVYQAENDKEGYLMEIKER-TNELIRPPICNVDQAVLVFSAVQPSFSTALL--DRFLVLVEANDIQPIICI 124 (307)
T ss_dssp CCCCCBTCEEEEECCTTSCEEEEEECCC-SCEETTTTEECCCEEEEEEESTTTTCCHHHH--HHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCeEEEEEEcCCCceEEEEEcch-hhhhhHHHHHhCCEEEEEEeCCCCCCCHHHH--HHHHHHHHHCCCCEEEEE
Confidence 4569999999998744 57999999999 9999999999999 666799999999 999999999999999999
Q ss_pred eCCCh---HH----HHHHH---HHhCCeEEEeccC--------ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccce
Q 015825 103 LEVDT---PY----VREQK---KVVGAEVVAWSKG--------VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFS 164 (399)
Q Consensus 103 ~k~D~---~~----~~~l~---~~~g~~v~~~s~~--------~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~ 164 (399)
||+|. .. ++++. +..||+++.+|+. ....+|++++|+||||||||||+|+|.|...+..| .
T Consensus 125 nK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G-~ 203 (307)
T 1t9h_A 125 TKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTN-E 203 (307)
T ss_dssp ECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred ECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhhcCCCEEEEECCCCCCHHHHHHHhccccccccc-c
Confidence 99993 22 34433 4679999998743 12358999999999999999999999999988888 5
Q ss_pred ee-------ecCCCccccccCCeeEEecChHHH
Q 015825 165 VS-------HTTRAPRAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 165 i~-------~ttr~~~~~~~~~i~yvfq~~~lf 190 (399)
++ ++|+........ .+|++|++.+.
T Consensus 204 I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~ 235 (307)
T 1t9h_A 204 ISEHLGRGKHTTRHVELIHTS-GGLVADTPGFS 235 (307)
T ss_dssp -----------CCCCCEEEET-TEEEESSCSCS
T ss_pred eeeecCCCcccccHHHHhhcC-CEEEecCCCcc
Confidence 54 566654433333 68999987543
No 3
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.93 E-value=5.2e-26 Score=204.65 Aligned_cols=183 Identities=48% Similarity=0.846 Sum_probs=136.0
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~ 212 (399)
|++++|+||||||||||+++|++++++.+|..++++|+.++..+..+.+|+|++...|..+...+.+.++..+.+++|+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~ 80 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccC
Confidence 57899999999999999999999998888889999999998888888999999999999888778888999899999999
Q ss_pred cHHHHHHHHHcCCceEEecchhhHHHHHc-CCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCC
Q 015825 213 SVEAVEAVADAGKRCILDIDVQGARSVRA-SPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSS 291 (399)
Q Consensus 213 ~~~~i~~~~~~g~~~vldld~~g~~~l~~-~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~ 291 (399)
+...+.+.++.+..+++++++++.+.++. .......+|+.+|+.+.|.+|+.+|+.++++.+++++.....++.... .
T Consensus 81 ~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~~~~~-~ 159 (186)
T 3a00_A 81 TVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAE-T 159 (186)
T ss_dssp EHHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC----------------------------------C
T ss_pred cHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc-c
Confidence 99999999999999999999999999988 677888999999999999999999999999999999998876665432 3
Q ss_pred CcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 292 GIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 292 ~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
..+|++|+|+++++++..+..++..
T Consensus 160 ~~~d~vi~nd~~~~a~~~l~~~i~~ 184 (186)
T 3a00_A 160 GAHDKVIVNDDLDKAYKELKDFIFA 184 (186)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHTT
T ss_pred cCCcEEEECcCHHHHHHHHHHHHHh
Confidence 5789999999999999999887643
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.92 E-value=2.7e-27 Score=235.27 Aligned_cols=216 Identities=19% Similarity=0.146 Sum_probs=165.7
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+|...+..+.++...+|++++|+||||||||||+++|+|+++|..| .+....+.. .....++++|+||++.+|+++
T Consensus 13 yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G-~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~l- 90 (381)
T 3rlf_A 13 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG-DLFIGEKRMNDTPPAERGVGMVFQSYALYPHL- 90 (381)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTCCGGGSCEEEECTTCCCCTTS-
T ss_pred ECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCe-EEEECCEECCCCCHHHCCEEEEecCCcCCCCC-
Confidence 4444444444455679999999999999999999999999999988 555422111 111235699999999999988
Q ss_pred hhhhhHHHHHHhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 195 KDGKFLEFASVHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.|++.|....++.+....++.+.+ ++..+.+-.+..+...++|++..+.+|+.+|++++||||++++|+.
T Consensus 91 ---tV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~ 167 (381)
T 3rlf_A 91 ---SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167 (381)
T ss_dssp ---CHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHH
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHH
Confidence 89999988766666666544433322 2211222233334444567777778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
.++++++.|+++.++.+ .++|+++||++++...+++++.+.+|++++.+++.+++..|....++.+.+
T Consensus 168 ~~~~l~~~l~~l~~~~g-------~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v~~~~g 235 (381)
T 3rlf_A 168 LRVQMRIEISRLHKRLG-------RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIG 235 (381)
T ss_dssp HHHHHHHHHHHHHHHHC-------CEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhCC-------CEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHHHHhcC
Confidence 99999999999876543 389999999999999999999999999999999999999998888776544
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.92 E-value=2.8e-27 Score=233.52 Aligned_cols=216 Identities=13% Similarity=0.049 Sum_probs=161.3
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC------ccccccCCeeEEecChHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA------PRAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~------~~~~~~~~i~yvfq~~~lf 190 (399)
+|...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....+. ......++++|+||++.+|
T Consensus 14 y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G-~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~ 92 (359)
T 3fvq_A 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG-EISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF 92 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEE-EEEETTEEEESSSCBCCGGGSCCEEECTTCCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCc-EEEECCEECcccccccchhhCCEEEEeCCCcCC
Confidence 4444444444555679999999999999999999999999999888 55432211 1122235699999999999
Q ss_pred HHHHhhhhhHHHHHHhccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 191 EKAIKDGKFLEFASVHGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
+++ ++.|++.|....++.+....+ +.++. ++..+.+-.+..+...++|++..+.+|+.+|++++||||+++
T Consensus 93 p~l----tV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~ 168 (359)
T 3fvq_A 93 PHL----TVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSA 168 (359)
T ss_dssp TTS----CHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred CCC----CHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 888 899999887655554433332 22222 222122223333444456777778899999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
+|+..++++++.+.++.++. ..++|+++||++++...+++++.+.+|++++.+++.+++..|...+++.+.+
T Consensus 169 LD~~~r~~l~~~l~~~~~~~-------g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~~a~~~g 240 (359)
T 3fvq_A 169 LDEQLRRQIREDMIAALRAN-------GKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIG 240 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHT-------TCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhC-------CCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcccHHHHHhcc
Confidence 99999999988888765543 3489999999999999999999999999999999999999998777665443
No 6
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.92 E-value=7.4e-25 Score=199.42 Aligned_cols=185 Identities=49% Similarity=0.848 Sum_probs=158.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g 211 (399)
+|++++|+||||||||||+++|+++++..+|..++|||+.++.++..+.+|.|.+...|..++.++.++++..+.+++||
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g 82 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG 82 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCC
Confidence 58999999999999999999999998777888889999988877778889999998888887777788888888888899
Q ss_pred CcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCC
Q 015825 212 TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSS 291 (399)
Q Consensus 212 ~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~ 291 (399)
.+.+.+.++++.+..+++++++++....+.....+..+|+.+|++++||||++++|.++++.++++|..+..++......
T Consensus 83 ~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~~ 162 (198)
T 1lvg_A 83 TSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEP 162 (198)
T ss_dssp EEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGST
T ss_pred CCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 99888988888888888899998888776656666779999999999999999999999999999999887665432112
Q ss_pred CcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 292 GIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 292 ~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
..+|.|++|+++++++..+..++..
T Consensus 163 ~~~D~iivnd~le~a~~~l~~ii~~ 187 (198)
T 1lvg_A 163 GLFDLVIINDDLDKAYATLKQALSE 187 (198)
T ss_dssp TTCSEEEECSSHHHHHHHHHHHTHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHHH
Confidence 6789999999999999999887754
No 7
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.92 E-value=9.4e-25 Score=202.14 Aligned_cols=184 Identities=40% Similarity=0.600 Sum_probs=160.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCC--cccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPS--MFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~--~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
..+|++++|+||||||||||+++|++..++ ..| .++++|++++..+..+++|+||+...|+.+...+.|.|++.+.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g-~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~ 91 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV-SVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG 91 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEE-CCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEE-EEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence 358999999999999999999999999985 455 88899998877777789999999999998877777799988888
Q ss_pred cccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015825 208 NLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~ 287 (399)
++|+++.+.+.+.++.|..+++|+|+++...++.......++|+.+|++..+.+|+..++.++.+++.+++..+..++..
T Consensus 92 ~~yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~~~ 171 (219)
T 1s96_A 92 NYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSH 171 (219)
T ss_dssp EEEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 88999888888889899999999999999988876657788999999999999999999988999999999988776653
Q ss_pred ccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 288 GKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 288 ~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
...||++++|+++++|+..+..++...
T Consensus 172 ---~~~~d~~i~Nd~l~~a~~~l~~ii~~~ 198 (219)
T 1s96_A 172 ---YAEYDYLIVNDDFDTALTDLKTIIRAE 198 (219)
T ss_dssp ---GGGSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred ---ccCCCEEEECcCHHHHHHHHHHHHHHH
Confidence 346899999999999999999887544
No 8
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.92 E-value=1.3e-24 Score=197.56 Aligned_cols=176 Identities=32% Similarity=0.536 Sum_probs=150.9
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
...+|++++|+||||||||||++.|++.++..+...+++|||+++..+.++..|+|.+...|..++..+.|+|+..+.++
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n 94 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGN 94 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhce
Confidence 45689999999999999999999999988755556889999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015825 209 LYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQG 288 (399)
Q Consensus 209 ~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~ 288 (399)
+||++.+.+++.++.|+.+++++++++++.++...+.++++|+.+|++. +..++.+.+.+++.++..+.
T Consensus 95 ~YGt~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~~--------~~~e~~~~i~~r~~~~~~~~--- 163 (197)
T 3ney_A 95 MFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQG--------TQTEALQQLQKDSEAIRSQY--- 163 (197)
T ss_dssp EEEEEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCBS--------SCCHHHHHHHHHHHHHHHHH---
T ss_pred ecccchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCcc--------ccchHHHHHHHHHHHHHHhh---
Confidence 9999999999999999999999999999999888888999999999863 33334456666665543222
Q ss_pred cCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 289 KSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 289 ~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
.+.||++++|+|+++|++.+..++...
T Consensus 164 --~~~fd~vivNd~l~~a~~~l~~ii~~~ 190 (197)
T 3ney_A 164 --AHYFDLSLVNNGVDETLKKLQEAFDQA 190 (197)
T ss_dssp --GGGCSEEEEESCHHHHHHHHHHHHHHC
T ss_pred --ccCCCEEEECCCHHHHHHHHHHHHHHc
Confidence 246799999999999999999987654
No 9
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.91 E-value=2.8e-26 Score=227.09 Aligned_cols=211 Identities=12% Similarity=0.082 Sum_probs=158.7
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....+.. .....+.++|+||++.+|+++ ++
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l----tv 92 (362)
T 2it1_A 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSG-KIYFDEKDVTELPPKDRNVGLVFQNWALYPHM----TV 92 (362)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCGGGTTEEEECTTCCCCTTS----CH
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCce-EEEECCEECCcCCHhHCcEEEEecCcccCCCC----CH
Confidence 33334455668999999999999999999999999999888 554322111 011235699999999889887 89
Q ss_pred HHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 200 LEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
.+++.|....++.+.... .+.++. ++..+.+-.+..+...++|+...+.+|+.+|++++||||++++|+..++.+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 172 (362)
T 2it1_A 93 YKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEV 172 (362)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 999988655555554433 233322 222222223334444456677777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
++.|+++.++.+ .++|+++||++++...+++++.+.+|++++.+++.+++..|....++.+.+
T Consensus 173 ~~~l~~l~~~~g-------~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~~~~~g 235 (362)
T 2it1_A 173 RAELKRLQKELG-------ITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFLG 235 (362)
T ss_dssp HHHHHHHHHHHT-------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHSB
T ss_pred HHHHHHHHHhCC-------CEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHHcC
Confidence 999998865543 389999999999999999999999999999999999998887776665443
No 10
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.91 E-value=2.1e-26 Score=229.03 Aligned_cols=215 Identities=12% Similarity=0.124 Sum_probs=159.8
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecChHH
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTERSV 189 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~l 189 (399)
+...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....+.. .....++++|+||++.+
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG-QIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE-EEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCcc-EEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 333333344455569999999999999999999999999999888 554322111 11123569999999988
Q ss_pred HHHHHhhhhhHHHHHHhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
|+++ ++.+++.|....++.+.....+ .++. ++..+.+-.+..+...++|+...+.+|+.+|++++||||++
T Consensus 93 ~~~l----tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 168 (372)
T 1g29_1 93 YPHM----TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLS 168 (372)
T ss_dssp CTTS----CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTT
T ss_pred CCCC----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCc
Confidence 9887 8999998876555555443332 2221 22111222233333445666777789999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
++|+..++.+++.|+++.++.+ .++|+++||++++...+++++.+.+|++++.+++.+++..|...+++.+.+
T Consensus 169 ~LD~~~r~~l~~~l~~l~~~~g-------~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 241 (372)
T 1g29_1 169 NLDAKLRVRMRAELKKLQRQLG-------VTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIG 241 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHT-------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred cCCHHHHHHHHHHHHHHHHhcC-------CEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 9999999999999998866543 389999999999999999999999999999999999998888777766543
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.91 E-value=2.3e-26 Score=227.44 Aligned_cols=216 Identities=13% Similarity=0.094 Sum_probs=160.8
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+|...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....+.. .....+.++|+||++.+|+++
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l- 90 (359)
T 2yyz_A 13 FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSG-EIYFDDVLVNDIPPKYREVGMVFQNYALYPHM- 90 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCGGGTTEEEECSSCCCCTTS-
T ss_pred ECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCcc-EEEECCEECCCCChhhCcEEEEecCcccCCCC-
Confidence 3333334444455679999999999999999999999999999888 555422111 011235699999999889887
Q ss_pred hhhhhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 195 KDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.|++.|....++.+... +.+.++. ++..+.+-.+..+...++|+...+.+|+.+|++++||||++++|+.
T Consensus 91 ---tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~ 167 (359)
T 2yyz_A 91 ---TVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDAN 167 (359)
T ss_dssp ---CHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred ---CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 8999998876555544332 3333332 2211122223333444566777778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
.++.+++.|+++.++.+ .++++++||++++...+++++.+.+|++++.+++.+++..|....++.+.+
T Consensus 168 ~r~~l~~~l~~l~~~~g-------~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 235 (359)
T 2yyz_A 168 LRMIMRAEIKHLQQELG-------ITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIG 235 (359)
T ss_dssp HHHHHHHHHHHHHHHHC-------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhcC-------CEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 99999999998865532 389999999999999999999999999999999999998888777666544
No 12
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.91 E-value=6.7e-25 Score=216.48 Aligned_cols=141 Identities=23% Similarity=0.226 Sum_probs=112.6
Q ss_pred ceecccCCCCCceeccEEEEEecC-Ce------eEEEEeeeCCCceEEccc--------ccCCC-----CCCCCCCCccC
Q 015825 22 FSLKSRDCETTTVIGDKTYVIAGS-DE------SIGVKIYDRSTGNWLIPA--------VRGIE-----PRPCKGHSAVL 81 (399)
Q Consensus 22 ~~~k~~~~~~~~~vGD~v~~~~~~-~~------~~i~~i~~r~~~~l~rp~--------~an~~-----~~~~p~~~~~~ 81 (399)
+..+.++....|+|||||.|+..+ ++ |+|++|+|| +|.|+||+ +||+| .+..|.++..+
T Consensus 70 ~~~~~r~~~~~~~vGD~V~~~~~~~~~~~~~~~~~I~~i~~R-~~~l~R~~~~~~~~~i~anvD~v~iv~a~~P~~~~~~ 148 (358)
T 2rcn_A 70 HRCNIRRTIRSLVTGDRVVWRPGKAAAEGVNVKGIVEAVHER-TSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNI 148 (358)
T ss_dssp EEEEECTTCCCCCBTCEEEEECBC-------CCEEEEEECCC-SCEEEEC-----CEEEEECCCEEEEEEESTTTCCHHH
T ss_pred EEEEecCCCCCCCCCcEEEEEeCCCccccccccceEeEEeCC-cCcccCcchhhHHHHHHhcCCEEEEEEeCCCCCCHHH
Confidence 455666665679999999998633 34 899999999 99999986 89999 33469999999
Q ss_pred ccccchhhhhccCCCceEEEEeCCCh--H-H---HHHH---HHHhCCeEEEeccC-cc-------CCCCcEEEEEcCCCC
Q 015825 82 LNEDRILVIKKGSSSDDCLWFLEVDT--P-Y---VREQ---KKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGV 144 (399)
Q Consensus 82 l~~dr~L~~~~~~~~~~~i~~~k~D~--~-~---~~~l---~~~~g~~v~~~s~~-~~-------~~~g~~~~l~GpsG~ 144 (399)
| ||||++++..+++|+|++||+|. + . ++.+ .+..||+++.+|+. .. ..+|++++|+|||||
T Consensus 149 i--~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~~G~~~~lvG~sG~ 226 (358)
T 2rcn_A 149 I--DRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGV 226 (358)
T ss_dssp H--HHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHHTTSEEEEECCTTS
T ss_pred H--HHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhcCCCEEEEECCCCc
Confidence 9 99999999999999999999993 2 2 2222 25789999998865 22 248999999999999
Q ss_pred CHHHHHhhhhhccC-Ccccceee
Q 015825 145 GKGTLISMLMKEFP-SMFGFSVS 166 (399)
Q Consensus 145 GKSTl~~~L~~~~~-~~~g~~i~ 166 (399)
|||||+|+|+|... +..| .++
T Consensus 227 GKSTLln~L~g~~~~~~~G-~I~ 248 (358)
T 2rcn_A 227 GKSSLLNALLGLQNEILTN-DVS 248 (358)
T ss_dssp SHHHHHHHHHCCSSCCCCC----
T ss_pred cHHHHHHHHhccccccccC-Ccc
Confidence 99999999999998 8777 444
No 13
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.91 E-value=2.9e-26 Score=227.67 Aligned_cols=216 Identities=12% Similarity=0.088 Sum_probs=151.1
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
++...+..+.++...+|++++|+||||||||||+++|+|+++|..| .+....+.. .....+.++|+||++.+|+++
T Consensus 21 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l- 98 (372)
T 1v43_A 21 FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG-RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM- 98 (372)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCGGGGTEEEEEC------CC-
T ss_pred ECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCce-EEEECCEECCCCChhhCcEEEEecCcccCCCC-
Confidence 3433344444455679999999999999999999999999999988 554322111 011234699999999999887
Q ss_pred hhhhhHHHHHHhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 195 KDGKFLEFASVHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.|++.|....++.+.....+ .++. ++..+.+-.+..+...++|+...+.+|+.+|++++||||++++|+.
T Consensus 99 ---tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~ 175 (372)
T 1v43_A 99 ---TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 175 (372)
T ss_dssp ---CHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred ---CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 8999998876555555443332 2222 1111111111111112344555667999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
.++.+++.|+++.++.+ .++|+++||++++...+++++.+.+|++++.+++.+++..|...+++.+.+
T Consensus 176 ~r~~l~~~l~~l~~~~g-------~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~a~~~g 243 (372)
T 1v43_A 176 LRVAMRAEIKKLQQKLK-------VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIG 243 (372)
T ss_dssp HHHHHHHHHHHHHHHHT-------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhCC-------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 99999999998866543 389999999999999999999999999999999999998888777766544
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.91 E-value=2e-26 Score=227.47 Aligned_cols=205 Identities=14% Similarity=0.108 Sum_probs=155.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
+...+|++++|+||||||||||+++|+|+++|..| .+....+.. .....+.++|+||++.+|+++ ++.|++.|
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l----tv~eni~~ 110 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG-DVWIGGKRVTDLPPQKRNVGLVFQNYALFQHM----TVYDNVSF 110 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTCCGGGSSEEEECGGGCCCTTS----CHHHHHHH
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEECCEECCcCChhhCcEEEEecCcccCCCC----CHHHHHHH
Confidence 34568999999999999999999999999999888 555422111 111235699999999888887 89999988
Q ss_pred hccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 206 ~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
....++.+..... +.++. ++.-+.+-.+..+...++|+...+.+|+.+|++++||||++++|+..++.+++.|++
T Consensus 111 ~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 190 (355)
T 1z47_A 111 GLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ 190 (355)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 6555555544332 22322 111112222333334456667777899999999999999999999999999999998
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
+.++.+ .++|+++||++++...+++++.+.+|++++.+++.+++..|....++.+.+
T Consensus 191 l~~~~g-------~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 247 (355)
T 1z47_A 191 VHDEMG-------VTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASFIG 247 (355)
T ss_dssp HHHHHT-------CEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHHHHHTT
T ss_pred HHHhcC-------CEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHhcC
Confidence 866543 389999999999999999999999999999999999998887776665444
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.91 E-value=2.6e-26 Score=226.82 Aligned_cols=207 Identities=13% Similarity=0.102 Sum_probs=156.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-------cccccCCeeEEecChHHHHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-------RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-------~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
.+....+|++++|+||||||||||+++|+|+++|..| .+....+.. .....+.++|+||++.+|+++ +
T Consensus 24 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l----t 98 (353)
T 1oxx_K 24 VNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG-ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL----T 98 (353)
T ss_dssp EEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEE-EEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS----C
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECcccccccCChhhCCEEEEeCCCccCCCC----C
Confidence 3445568999999999999999999999999999888 554322111 111235699999999889887 8
Q ss_pred hHHHHHHhccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.|++.|....++.+..... +.++. ++..+.+-.+..+...++|+...+.+|+.+|++++||||++++|+..++.
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~ 178 (353)
T 1oxx_K 99 AFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178 (353)
T ss_dssp HHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence 99999887655555544332 22322 11111222233334445667777789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
+++.|+++.++.+ .++|+++||++++...+++++.+.+|++++.+++.+++..|....++.+.+
T Consensus 179 l~~~l~~l~~~~g-------~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 242 (353)
T 1oxx_K 179 ARALVKEVQSRLG-------VTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIG 242 (353)
T ss_dssp HHHHHHHHHHHHC-------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHHHHHHS
T ss_pred HHHHHHHHHHhcC-------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 9999998865532 389999999999999999999999999999999999998887776665444
No 16
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.90 E-value=2.5e-23 Score=190.20 Aligned_cols=185 Identities=39% Similarity=0.645 Sum_probs=135.6
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc-
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG- 207 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~- 207 (399)
...+|++++|+||||||||||+++|+|+++...+ ...++++.+......+++|+||++..|+.+.....+.++..+.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~-~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n 94 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHF-SVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGG 94 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHSTTCEE-CCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGG
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEE-cccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCc
Confidence 3468999999999999999999999999864443 34556655544455678999999988887633333333333444
Q ss_pred -cccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 015825 208 -NLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK 286 (399)
Q Consensus 208 -~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~ 286 (399)
..|+.+.+.+++.+.++..++++++..+...++...+..+++|+.+|++++||||+++++.+.....++++..+..++.
T Consensus 95 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~ 174 (207)
T 1znw_A 95 LHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELA 174 (207)
T ss_dssp TEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 5577777777777777777777788878877777778888899999999999999999976544445555544443433
Q ss_pred hccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 287 QGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 287 ~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
. ...++++++|||++++...+++++.+.
T Consensus 175 ~---~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 175 A---QGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp G---GGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred h---hccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 2 124699999999999999999998874
No 17
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.90 E-value=2.5e-23 Score=192.10 Aligned_cols=186 Identities=38% Similarity=0.639 Sum_probs=148.5
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccc---eeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF---SVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~---~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
...+|++++|+||||||||||+++|+|+++ |. .+.++++.++..+.++++|+||++..|+.+...+.++++..+
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p---G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEFP---NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNY 95 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHST---TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhCC---CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhc
Confidence 345899999999999999999999999883 42 223455555544566789999999999887555667777767
Q ss_pred hccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCC--cceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASP--LDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~--~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
.++.|+.+...+.+.++.+..+++++++++.+..+... ..++.+|+.+|++++||||++++|..+++.+++++..+..
T Consensus 96 ~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 96 ANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp TTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred ccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 77788888878888888888888899998888776555 4558899999999999999999999999999999998776
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
+..... ...||.|+++|++++|+..+++++....
T Consensus 176 ~~~~~h-~~~~d~iiv~~~~~ea~~~~~~ii~~~~ 209 (218)
T 1z6g_A 176 ELHEAN-LLNFNLSIINDDLTLTYQQLKNYLLNSY 209 (218)
T ss_dssp HHHHHT-TSCCSEEEECSSHHHHHHHHHHHHHHHT
T ss_pred HHHhhc-ccCCCEEEECCCHHHHHHHHHHHHHHHH
Confidence 544211 2468999999999999999999887654
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.90 E-value=3e-26 Score=225.86 Aligned_cols=211 Identities=12% Similarity=0.080 Sum_probs=158.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....+.. .....+.++|+||++.+|+++ ++
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~l----tv 89 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG-RILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM----NV 89 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEE-EEEETTEECTTSCHHHHTCEEECTTCCCCTTS----CH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCc-EEEECCEECCCCchhhCcEEEEecCcccCCCC----CH
Confidence 33334455679999999999999999999999999999988 555432211 111234689999999889887 88
Q ss_pred HHHHHHhccccCCcH-HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 200 LEFASVHGNLYGTSV-EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~-~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
.|++.|....++.+. +.+.+.++. ++..+.+-.+..+...++|+...+.+|+.+|++++||||++++|+..++.+++.
T Consensus 90 ~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~ 169 (348)
T 3d31_A 90 KKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM 169 (348)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence 999888654433222 334444433 221122223334444556677777899999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
|+++.++. ..++|+++||++++...+++++.+.+|++++.+++.+++..|....++.+.+
T Consensus 170 l~~l~~~~-------g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 229 (348)
T 3d31_A 170 LSVLHKKN-------KLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVG 229 (348)
T ss_dssp HHHHHHHT-------TCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHHHHHHC
T ss_pred HHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHHHHhcC
Confidence 99876543 2389999999999999999999999999999999999999988777765433
No 19
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.90 E-value=7.7e-24 Score=193.94 Aligned_cols=184 Identities=42% Similarity=0.673 Sum_probs=158.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
.+|++++|+||||||||||+++|++.+++.++..++++|++++..+..+++|+|.+...|..++..+.|.++..+.+++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y 85 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY 85 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence 47899999999999999999999999887566688899999998888889999999999998888889999998889999
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
|++...+.+.++.+..+++|+++++...++...+...++|+.+|+.+.+.+|+..|+.++.+.+++++.....++...
T Consensus 86 g~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~~~~-- 163 (208)
T 3tau_A 86 GTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMM-- 163 (208)
T ss_dssp EEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHHHHG--
T ss_pred CCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh--
Confidence 999999999999999999999999999888888888899999998999999999999888899999999887665543
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
..+|++++|+++++++..+..++...
T Consensus 164 -~~~d~vivN~~~~~~~~~l~~~i~~~ 189 (208)
T 3tau_A 164 -ASYDYAVVNDVVANAVQKIKGIVETE 189 (208)
T ss_dssp -GGSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred -ccCCEEEECcCHHHHHHHHHHHHHHH
Confidence 46799999999999999999887654
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.90 E-value=1.3e-25 Score=221.91 Aligned_cols=202 Identities=13% Similarity=0.076 Sum_probs=153.0
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHHhhh
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
+.++...+|++++|+||||||||||+++|+|+++|..| .+....+... ...+.+++|+||++.+|+.+
T Consensus 46 ~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G-~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~---- 120 (366)
T 3tui_C 46 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG-SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR---- 120 (366)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTS----
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCC----
Confidence 34455679999999999999999999999999999988 5554222111 11235699999998888776
Q ss_pred hhHHHHHHhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 198 KFLEFASVHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++.+++.+....++.+.....+.+.+ ++....+-.+..+...++|++..+.+|+.+|++++||||++++|+.++.
T Consensus 121 TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~ 200 (366)
T 3tui_C 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200 (366)
T ss_dssp CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 88999888766666665544433322 2111111122233334566677778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
.+.+.|+++.++. ..++++++||++++...+++++.+.+|+++..+++.+++..|....
T Consensus 201 ~i~~lL~~l~~~~-------g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~ 259 (366)
T 3tui_C 201 SILELLKDINRRL-------GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPL 259 (366)
T ss_dssp HHHHHHHHHHHHS-------CCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHH
T ss_pred HHHHHHHHHHHhC-------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 9999999886543 3489999999999999999999999999999999888888776443
No 21
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=99.88 E-value=1.4e-22 Score=194.88 Aligned_cols=181 Identities=34% Similarity=0.579 Sum_probs=164.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEec-ChHHHHHHHhhhhhHHHHHHhccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFT-ERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq-~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
...++++|+||+ |+|+++.|+...+..++..++||||+++..+.+|..|+|. +.+.|..++..+.|+|+..+.+++
T Consensus 98 ~~~RpvVl~Gp~---K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~ 174 (292)
T 3tvt_A 98 NYTRPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNL 174 (292)
T ss_dssp SSCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCeEEEeCCC---HHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccce
Confidence 467999999994 9999999999998888889999999999999999999997 778899999999999999999999
Q ss_pred cCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015825 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGK 289 (399)
Q Consensus 210 ~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~ 289 (399)
||++.+.+++.++.|+.+++|+++++++.++...+.+++||+.+|+++.|.+++..++.++.+.+.+++.++..++
T Consensus 175 YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~~k~e~e~---- 250 (292)
T 3tvt_A 175 YGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEF---- 250 (292)
T ss_dssp EEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHHHHHHHHHHH----
T ss_pred eEEehHHHHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHhCCCchhHHHHHHHHHHHHHhh----
Confidence 9999999999999999999999999999999999999999999999999999999998887777777776655444
Q ss_pred CCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 290 SSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 290 ~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
.+.||+||+|+++++|+..+..+|.....
T Consensus 251 -~~~fD~vIvNddle~a~~~l~~iI~~e~~ 279 (292)
T 3tvt_A 251 -GEYFTGVVQGDTIEEIYSKVKSMIWSQSG 279 (292)
T ss_dssp -TTTCSEEECCSSHHHHHHHHHHHHHHHTC
T ss_pred -hhhCCEEEECcCHHHHHHHHHHHHHHhhC
Confidence 34689999999999999999998877654
No 22
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.88 E-value=2.9e-22 Score=194.09 Aligned_cols=152 Identities=20% Similarity=0.181 Sum_probs=123.1
Q ss_pred ceeccEEEEEe-cCCeeEEEEeeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhhhccCCCceEEEEeCC
Q 015825 33 TVIGDKTYVIA-GSDESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEV 105 (399)
Q Consensus 33 ~~vGD~v~~~~-~~~~~~i~~i~~r~~~~l~rp~~an~~------~~~~p~~~~~~l~~dr~L~~~~~~~~~~~i~~~k~ 105 (399)
|+|||||.++. +++.|+|++|+|| ++.|.||.++|+| .+..|.+++..+ ||+|..++..+++++|++||+
T Consensus 44 ~~vGD~V~~~~~~~~~g~I~~i~er-~~~l~r~~~~naD~vliV~d~~~p~~s~~~l--~~~l~~~~~~~~~~ilV~NK~ 120 (302)
T 2yv5_A 44 IYAGDYVWGEVVDPNTFAIEEVEER-KNLLIRPKVANVDRVIIVETLKMPEFNNYLL--DNMLVVYEYFKVEPVIVFNKI 120 (302)
T ss_dssp CCBTCEEEEEEEETTEEEEEEECCC-SCEEETTEEESCCEEEEEECSTTTTCCHHHH--HHHHHHHHHTTCEEEEEECCG
T ss_pred CcCceEEEEEEccCCeEEEEeeCCh-HHHHhHHHHHhcCEEEEEEECCCCCCCHHHH--HHHHHHHHhCCCCEEEEEEcc
Confidence 99999999987 4458999999999 8999999999999 666788899999 999999988999999999999
Q ss_pred Ch--HH----HHH---HHHHhCCeEEEeccC-cc-------CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee--
Q 015825 106 DT--PY----VRE---QKKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-- 166 (399)
Q Consensus 106 D~--~~----~~~---l~~~~g~~v~~~s~~-~~-------~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~-- 166 (399)
|. +. .++ ..+.+||+++.+|+. .. ...|++++|+||||||||||+|+|. ...+..| .++
T Consensus 121 DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G-~i~~~ 198 (302)
T 2yv5_A 121 DLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQ-EVSEK 198 (302)
T ss_dssp GGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCS-CC---
T ss_pred cCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccCcEEEEECCCCCCHHHHHHHHH-HhhCccc-ccccc
Confidence 93 21 222 235679999999876 22 3589999999999999999999999 9888888 554
Q ss_pred -----ecCCCccccccCCeeEEecChHH
Q 015825 167 -----HTTRAPRAMEKDGVHYHFTERSV 189 (399)
Q Consensus 167 -----~ttr~~~~~~~~~i~yvfq~~~l 189 (399)
|+|+.........++|+||++.+
T Consensus 199 ~~~G~~~t~~~~~~~~~~~g~v~d~pg~ 226 (302)
T 2yv5_A 199 TERGRHTTTGVRLIPFGKGSFVGDTPGF 226 (302)
T ss_dssp ------CCCCEEEEEETTTEEEESSCCC
T ss_pred cCCCCCceeeEEEEEcCCCcEEEECcCc
Confidence 35655443333457999998743
No 23
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.87 E-value=1.8e-24 Score=205.59 Aligned_cols=206 Identities=12% Similarity=0.066 Sum_probs=145.5
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----------------ccccCCe
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----------------AMEKDGV 180 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----------------~~~~~~i 180 (399)
|...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+........ ......+
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 17 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG-AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEccccccccccccccChhhHHHHhcce
Confidence 333444444455679999999999999999999999999999888 5544322111 0112358
Q ss_pred eEEecChHHHHHHHhhhhhHHHHHHhc-cccCCcHHH----HHHHHHc-CCceE-EecchhhHHHHHcCCcceeEEEEcC
Q 015825 181 HYHFTERSVMEKAIKDGKFLEFASVHG-NLYGTSVEA----VEAVADA-GKRCI-LDIDVQGARSVRASPLDAIFIFICP 253 (399)
Q Consensus 181 ~yvfq~~~lf~~~~~~~~~~E~~~~~~-~~~g~~~~~----i~~~~~~-g~~~v-ldld~~g~~~l~~~~~~~~~ili~~ 253 (399)
+|+||++.+|+.+ ++.|++.+.. ..++.+... +.+.++. +.... .+-.+..+....+|+...+.+|+.+
T Consensus 96 ~~v~Q~~~l~~~l----tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~ 171 (262)
T 1b0u_A 96 TMVFQHFNLWSHM----TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 171 (262)
T ss_dssp EEECSSCCCCTTS----CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTC
T ss_pred EEEecCcccCCCC----cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999998777766 7888887743 333443322 2223322 11111 1212222333345666777799999
Q ss_pred CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 254 P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
|++++||||++++|+.+++.+.+.++++.++ ..++|+++||++++...+++++.+.+|.++..+++.+++..
T Consensus 172 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--------g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 243 (262)
T 1b0u_A 172 PDVLLFDEPTSALDPELVGEVLRIMQQLAEE--------GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243 (262)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--------TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999887532 23899999999999999999999999999888887777665
Q ss_pred Ccc
Q 015825 334 PAD 336 (399)
Q Consensus 334 p~~ 336 (399)
|..
T Consensus 244 ~~~ 246 (262)
T 1b0u_A 244 PQS 246 (262)
T ss_dssp CCS
T ss_pred cch
Confidence 543
No 24
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.87 E-value=2.7e-22 Score=179.43 Aligned_cols=175 Identities=25% Similarity=0.561 Sum_probs=142.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
++|++++|+||||||||||+++|++.+++.+...++++|++++..+..+.+|+|.+...|..++..+.++++..+.+++|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~y 82 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMY 82 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCccc
Confidence 57899999999999999999999998875343488999999988888889999999988888877778888888888899
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
+.+.+.+.+.++.+..+++++++++...++........+|+.+|+++.|.+| .+.+ +++.+...++.. ..
T Consensus 83 g~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l~~R--------~~~i-~r~~~~~~~~~~-~~ 152 (180)
T 1kgd_A 83 GTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNE--------DESL-QRLQKESDILQR-TY 152 (180)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTSCC--------SHHH-HHHHHHHHHHHH-HH
T ss_pred cccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHHHhh--------HHHH-HHHHHHHHHHHH-hh
Confidence 9999989999999999999999999999887777788899999988877665 2455 455555444421 11
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
.+.||++++|++++++++.+..++.
T Consensus 153 ~~~~d~~i~n~~~~~~~~~l~~~i~ 177 (180)
T 1kgd_A 153 AHYFDLTIINNEIDETIRHLEEAVE 177 (180)
T ss_dssp GGGCSEEEECSSHHHHHHHHHHHHH
T ss_pred hCCCcEEEECcCHHHHHHHHHHHHH
Confidence 3568999999999999999988764
No 25
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.87 E-value=3.4e-24 Score=203.63 Aligned_cols=204 Identities=16% Similarity=0.111 Sum_probs=144.6
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc------ccccCCeeEEecChHHHHHH
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR------AMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~------~~~~~~i~yvfq~~~lf~~~ 193 (399)
..+..+.+....+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++.+|+.+
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 115 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG-EIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHM 115 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTS
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc-EEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCC
Confidence 3344444455679999999999999999999999999999888 5554322110 11123589999998777665
Q ss_pred HhhhhhHHHHHHhc-cccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 194 IKDGKFLEFASVHG-NLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 194 ~~~~~~~E~~~~~~-~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.|++.+.. ..++.+... +.+.++. +.....+-.+..+....+|+...+.+|+.+|++++||||++++|
T Consensus 116 ----tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD 191 (263)
T 2olj_A 116 ----TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191 (263)
T ss_dssp ----CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred ----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCC
Confidence 7888887743 333433322 2233332 11111111222333345566777789999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcc
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~ 336 (399)
+.+++.+.+.|+++.++ ..++++++||++++...+++++.+.+|.++..+++.+++..|..
T Consensus 192 ~~~~~~~~~~l~~l~~~--------g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 252 (263)
T 2olj_A 192 PEMVGEVLSVMKQLANE--------GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQH 252 (263)
T ss_dssp HHHHHHHHHHHHHHHHT--------TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHhC--------CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCccc
Confidence 99999999999887532 23889999999999999999999999999888877777665543
No 26
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.86 E-value=1.4e-21 Score=177.09 Aligned_cols=183 Identities=36% Similarity=0.576 Sum_probs=151.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
.+|++++|+||||||||||+++|+++++. ......++++.+...+..+++|+||++..|+.+...+.+.++..+.+..|
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALAE-IKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHY 83 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSSS-EEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC-eEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccc
Confidence 47899999999999999999999999753 22244456666665566778999999999988765556666666777788
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
+.+...+.+.+..+..+++++++++...++........+++.+|+.+++.+|+..|+..+.+.+++++.....++..
T Consensus 84 ~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~--- 160 (205)
T 3tr0_A 84 GTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAH--- 160 (205)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHHTT---
T ss_pred cchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc---
Confidence 88888888888999999999999898888877777888999999999999999999988888999999887665543
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
...+|+|++|++++++...+.+++...
T Consensus 161 ~~~~d~vi~n~~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 161 YKEFDYLVVNDNFDQAVQNLIHIISAE 187 (205)
T ss_dssp GGGCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 246799999999999999999887644
No 27
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.85 E-value=1.6e-23 Score=195.93 Aligned_cols=191 Identities=13% Similarity=0.080 Sum_probs=135.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc---c-----cccCCeeEEecChHHHHHHHhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---A-----MEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~---~-----~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
.+....+|++++|+||||||||||+++|+|+++|..| .+........ . .....++|+||++.+|+.+
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~---- 98 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG-EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---- 98 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS----
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce-EEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC----
Confidence 3455679999999999999999999999999999999 6654322111 0 0123589999998877766
Q ss_pred hhHHHHHHhcccc---CCcHHHH----HHHHHc-CCce-EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 198 KFLEFASVHGNLY---GTSVEAV----EAVADA-GKRC-ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 198 ~~~E~~~~~~~~~---g~~~~~i----~~~~~~-g~~~-vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.|++.+....+ +...... .+.+.. +... ..+..+..+....+|+...+.+|+.+|++++||||++++|+
T Consensus 99 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~ 178 (235)
T 3tif_A 99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS 178 (235)
T ss_dssp CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 7888887643221 2333322 222222 1111 01222333344456677778899999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
.+++.+.+.++++.++. ..++|+++||++.+ ..+++++.+.+|.++..+++.+
T Consensus 179 ~~~~~i~~~l~~l~~~~-------g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 179 KTGEKIMQLLKKLNEED-------GKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHHHHHHHHH-------CCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHc-------CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhh
Confidence 99999999999876543 23899999999854 7899999999998887665443
No 28
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.85 E-value=3.2e-22 Score=185.71 Aligned_cols=186 Identities=34% Similarity=0.498 Sum_probs=133.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhh-hccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLM-KEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~-~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
..+|++++|+||||||||||+++|+ +++++. ...+.++++.+...+..+.+|+|++...|..+...+.+.++..+.++
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGN 102 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC----CE-EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-ccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccc
Confidence 4589999999999999999999999 998764 33667888888777777788999999888877665566666666677
Q ss_pred ccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCC-cceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015825 209 LYGTSVEAVEAVADAGKRCILDIDVQGARSVRASP-LDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287 (399)
Q Consensus 209 ~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~-~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~ 287 (399)
.|+.+...+.+.+..+..+++++++.+...++... .....+|+.+|+.+++++|+.+||..+++++++++.....++..
T Consensus 103 ~~~~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~ 182 (231)
T 3lnc_A 103 FYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISH 182 (231)
T ss_dssp EEEEECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC--------------CHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 78877777777788889999999998888877665 56778899999999999999999999999999999887665543
Q ss_pred ccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 288 GKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 288 ~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
...+|+|++|++++++.+.+.+++....+
T Consensus 183 ---~~~~d~vI~n~~~e~~~~~l~~~i~~~~~ 211 (231)
T 3lnc_A 183 ---CEAYDYVIVNEDIEETADRISNILRAEQM 211 (231)
T ss_dssp ---GGGSSEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ---hcCCeEEEECcCHHHHHHHHHHHHHHHhh
Confidence 34679999999999999999998876544
No 29
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=99.85 E-value=4.3e-21 Score=185.11 Aligned_cols=180 Identities=39% Similarity=0.622 Sum_probs=158.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEec-ChHHHHHHHhhhhhHHHHHHhccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFT-ERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq-~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
..+++++|+|| ||+||++.|....+..++..++||||+++.++.+|..|+|. +.+.|..++..+.|+|+..+.+++
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~ 179 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHL 179 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcE
Confidence 46899999999 79999999999887667778999999999999999999999 999999999999999999999999
Q ss_pred cCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH-HHHhc
Q 015825 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE-EIKQG 288 (399)
Q Consensus 210 ~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~-~l~~~ 288 (399)
||++.+.+++.++.|+.+++++++++++.++.....++++|+.+|++..|.+ +.+|+ +.+++++++.++.. ++..
T Consensus 180 YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~-L~~R~--t~~~i~~rl~~a~~~e~~~- 255 (295)
T 1kjw_A 180 YGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRI--TEEQARKAFDRATKLEQEF- 255 (295)
T ss_dssp EEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHH-HCTTS--CHHHHHHHHHHHHHHHHHH-
T ss_pred eeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHH-HHhcC--CHHHHHHHHHHHHHHHHhc-
Confidence 9999999999999999999999999998888766677999999999999988 87776 45778889988742 4433
Q ss_pred cCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 289 KSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 289 ~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
.+.||++|+|+++++|+..+..++.....
T Consensus 256 --~~~fd~vivNd~le~a~~~l~~ii~~~~~ 284 (295)
T 1kjw_A 256 --TECFSAIVEGDSFEEIYHKVKRVIEDLSG 284 (295)
T ss_dssp --GGGCSEEECCSSHHHHHHHHHHHHHHHSC
T ss_pred --cccCeEEEECcCHHHHHHHHHHHHHhccC
Confidence 34689999999999999999998865543
No 30
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.85 E-value=6.1e-24 Score=203.13 Aligned_cols=201 Identities=11% Similarity=0.055 Sum_probs=145.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc------cccccCCeeEEecChH-HHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTERS-VMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~-lf~~~~ 194 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... ....+..++|+||++. .+..+
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G-~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~- 100 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG-RILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA- 100 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSS-
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe-EEEECCEECCcccccHHHHhCcEEEEEcCcccccccC-
Confidence 33334455569999999999999999999999999999888 565433221 1112346999999874 22233
Q ss_pred hhhhhHHHHHHhccccCCcHHHHHHH----HHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 195 KDGKFLEFASVHGNLYGTSVEAVEAV----ADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~i~~~----~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+....++.+.....+. ++. +...+.+-.+..+....+|++..+.+|+.+|++++||||++++|+.
T Consensus 101 ---tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~ 177 (275)
T 3gfo_A 101 ---SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPM 177 (275)
T ss_dssp ---BHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHH
T ss_pred ---cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 78888887665566555443332 222 1211112223333334566777778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
++..+.+.++++.++. ..++++++||++++...+++++.+.+|+++..+++.+++..+
T Consensus 178 ~~~~i~~~l~~l~~~~-------g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 235 (275)
T 3gfo_A 178 GVSEIMKLLVEMQKEL-------GITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 235 (275)
T ss_dssp HHHHHHHHHHHHHHHH-------CCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHHH
T ss_pred HHHHHHHHHHHHHhhC-------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCH
Confidence 9999999999876322 238999999999999899999999999999988888776543
No 31
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.85 E-value=1.6e-23 Score=194.49 Aligned_cols=192 Identities=14% Similarity=0.054 Sum_probs=134.6
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-------c-ccCCeeEEecChHHHH
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-------M-EKDGVHYHFTERSVME 191 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-------~-~~~~i~yvfq~~~lf~ 191 (399)
..+..+.+....+|++++|+||||||||||+++|+|+++|..| .+......... . ....++|+||++.+|+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 95 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEG-KVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIP 95 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEE-EEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCT
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCC
Confidence 3334444455669999999999999999999999999999888 55442221110 0 1135899999987776
Q ss_pred HHHhhhhhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 192 KAIKDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
.+ ++.|++.+....++.+... +.+.++. +.....+-.+..+....+|+...+.+|+.+|++++||||++++
T Consensus 96 ~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L 171 (224)
T 2pcj_A 96 EL----TALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNL 171 (224)
T ss_dssp TS----CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTC
T ss_pred CC----CHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 65 7888877654444433222 2233332 2211122223333334566677778999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecC
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQ 325 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~ 325 (399)
|+.+++.+.+.++++.++ ..++++++||++.+ ..+++++.+.+|.++..+
T Consensus 172 D~~~~~~~~~~l~~l~~~--------g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g 221 (224)
T 2pcj_A 172 DSANTKRVMDIFLKINEG--------GTSIVMVTHERELA-ELTHRTLEMKDGKVVGEI 221 (224)
T ss_dssp CHHHHHHHHHHHHHHHHT--------TCEEEEECSCHHHH-TTSSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHC--------CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEe
Confidence 999999999999887543 23889999999887 778999999998877654
No 32
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.84 E-value=1.8e-23 Score=196.14 Aligned_cols=194 Identities=13% Similarity=0.101 Sum_probs=140.4
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
....+ ++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+|+.+ ++.|++.+
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~l----tv~enl~~ 93 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRG-EVRLNGADITPLPPERRGIGFVPQDYALFPHL----SVYRNIAY 93 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCTTTSCCBCCCSSCCCCTTS----CHHHHHHT
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCchhhCcEEEEcCCCccCCCC----cHHHHHHH
Confidence 44557 99999999999999999999999999888 554422111 111134589999998777665 78888877
Q ss_pred hccccCCc--HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 206 HGNLYGTS--VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 206 ~~~~~g~~--~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
....++.. .+.+.+.++. +.....+-.+..+....+|+...+.+|+.+|++++||||++++|+.+++.+.+.+.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 173 (240)
T 2onk_A 94 GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ 173 (240)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 54433322 1223333332 11111122233333345666777789999999999999999999999999999999875
Q ss_pred HHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 283 EEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
++. ..++++++||++++...+++++.+.+|+++..+++.+++..+
T Consensus 174 ~~~-------g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 174 REF-------DVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp HHH-------TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred Hhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 432 238999999999999999999999999998888777776555
No 33
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.84 E-value=2e-23 Score=197.68 Aligned_cols=202 Identities=14% Similarity=0.112 Sum_probs=143.0
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~ 193 (399)
++...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+|+.+
T Consensus 25 y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 103 (256)
T 1vpl_A 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG-IVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 103 (256)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred ECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCccHHHHhhcEEEEcCCCCCCCCC
Confidence 3434444444555679999999999999999999999999999888 555422211 111234689999998777655
Q ss_pred HhhhhhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 194 IKDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.|++.+....++..... +.+.++. +.....+-.+..+....+|+...+.+|+.+|++++||||++++|+
T Consensus 104 ----tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~ 179 (256)
T 1vpl_A 104 ----QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDV 179 (256)
T ss_dssp ----BHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCH
T ss_pred ----cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCH
Confidence 7888887754444444322 2233322 221111112222333455667777899999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
.++..+.+.|+++.++ ..++++++|+++++...+++++.+.+|.++..+++.++.
T Consensus 180 ~~~~~l~~~l~~l~~~--------g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 180 LNAREVRKILKQASQE--------GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK 234 (256)
T ss_dssp HHHHHHHHHHHHHHHT--------TCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHhC--------CCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999886532 238899999999998889999999999988777666554
No 34
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.84 E-value=2.5e-23 Score=198.01 Aligned_cols=205 Identities=14% Similarity=0.069 Sum_probs=145.7
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~ 192 (399)
++...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+++.
T Consensus 21 ~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (266)
T 4g1u_C 21 VQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG-ECHLLGQNLNSWQPKALARTRAVMRQYSELAFP 99 (266)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSC-EEEETTEETTTSCHHHHHHHEEEECSCCCCCSC
T ss_pred eCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECCcCCHHHHhheEEEEecCCccCCC
Confidence 3434444444555679999999999999999999999999999999 665432211 11112347999998766544
Q ss_pred HHhhhhhHHHHHHhccccCC--cHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEc------CCChHHHHHHH
Q 015825 193 AIKDGKFLEFASVHGNLYGT--SVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFIC------PPSMEELEERL 263 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~--~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~------~P~lllLDEpl 263 (399)
+ ++.|++.+....+.. ..+.+.+.++. +.....+-.+..+....+|+...+.+|+. +|++++||||+
T Consensus 100 ~----tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPt 175 (266)
T 4g1u_C 100 F----SVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPT 175 (266)
T ss_dssp C----BHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCC
T ss_pred C----CHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCcc
Confidence 4 788888776544322 23334444433 21111112222333345666777778888 99999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+++|+.++..+.+.++++.++ +..++++++||++++...+++++.+.+|+++..+++.+++..
T Consensus 176 s~LD~~~~~~i~~~l~~l~~~-------~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 176 SALDLYHQQHTLRLLRQLTRQ-------EPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp SSCCHHHHHHHHHHHHHHHHH-------SSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH
T ss_pred ccCCHHHHHHHHHHHHHHHHc-------CCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc
Confidence 999999999999999987644 234889999999999999999999999999998887776654
No 35
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.84 E-value=1.9e-23 Score=197.88 Aligned_cols=199 Identities=13% Similarity=0.121 Sum_probs=140.7
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHH
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~ 192 (399)
+...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... ......+++|+||++.+|+.
T Consensus 18 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG-RVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 334444445555679999999999999999999999999999888 555432211 11112458999999877776
Q ss_pred HHhhhhhHHHHHHhccc--cC-----------Cc-H---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCC
Q 015825 193 AIKDGKFLEFASVHGNL--YG-----------TS-V---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPP 254 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~--~g-----------~~-~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P 254 (399)
+ ++.|++.+.... ++ .. . ..+.+.++. +.....+-.+..+...++|+...+.+|+.+|
T Consensus 97 ~----tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p 172 (257)
T 1g6h_A 97 M----TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNP 172 (257)
T ss_dssp S----BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred C----cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCC
Confidence 5 888888775332 12 11 1 222333332 1111111122233334566677778999999
Q ss_pred ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 255 ~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
++++||||++++|+.+++.+.+.++++.++ ..++|+++||++++...+++++.+.+|.++..+++.+
T Consensus 173 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~--------g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 173 KMIVMDEPIAGVAPGLAHDIFNHVLELKAK--------GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHT--------TCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHC--------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999887532 2388999999999988899999999999887777666
No 36
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.83 E-value=3.3e-23 Score=194.34 Aligned_cols=203 Identities=11% Similarity=0.029 Sum_probs=138.4
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHH
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~ 192 (399)
+...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... ......+++|+||++.+|+.
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG-KIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 333344444455669999999999999999999999999999888 555432211 11113459999999877766
Q ss_pred HHhhhhhHHHHHHhcccc-CCc--HHHHHHHHHcC--CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 193 AIKDGKFLEFASVHGNLY-GTS--VEAVEAVADAG--KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~-g~~--~~~i~~~~~~g--~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
+ ++.|++.+....+ ... .+.+.+.++.- .....+-.+..+....+|+...+.+|+.+|++++||||++++|
T Consensus 96 l----tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD 171 (240)
T 1ji0_A 96 L----TVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLA 171 (240)
T ss_dssp S----BHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCC
T ss_pred C----cHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 5 7888887753211 111 11222222110 0000011111122234455666779999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+++.+.+.|+++.++ ..++++++||++++...+++++.+.+|+++..+++.++...
T Consensus 172 ~~~~~~l~~~l~~~~~~--------g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 172 PILVSEVFEVIQKINQE--------GTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHHHHHHHHHHHHHHHT--------TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHC--------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 99999999999886531 23899999999999999999999999998877766655543
No 37
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.83 E-value=4.2e-20 Score=168.22 Aligned_cols=185 Identities=38% Similarity=0.686 Sum_probs=153.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
-+|++++|+|||||||||+++.|...++..+...++||||+++..+..+..|.|.+.+.|..+...+.|.++..+.+++|
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence 47899999999999999999999988754245578899999998888888899999888888777778888877778889
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCc--ceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPL--DAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQG 288 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~--~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~ 288 (399)
+.+.+.+...++.+..+++|.++++.+.++.... ....+|+.+++.+++.+|+..|+..+.+.+.+++.....++...
T Consensus 90 ~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~ 169 (204)
T 2qor_A 90 GTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEA 169 (204)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9998888888889999999999999888876655 56788888788999999999998778889998888876555310
Q ss_pred cCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 289 KSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 289 ~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
....+|.+++|++++++++.+..++..
T Consensus 170 -~~~~~d~vi~n~~~e~~~~~i~~~i~~ 196 (204)
T 2qor_A 170 -DKVGFNYFIVNDDLARTYAELREYLLG 196 (204)
T ss_dssp -HHHTCSEEEECSSHHHHHHHHHHHHHH
T ss_pred -hhccCcEEEECcCHHHHHHHHHHHHHH
Confidence 123568889999999999998887653
No 38
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.82 E-value=6.3e-23 Score=204.95 Aligned_cols=197 Identities=15% Similarity=0.105 Sum_probs=142.9
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+...+|++++|+||||||||||+++|+|+++ ..| .+....+... ...++.++|+||++.+|+ + ++.+++
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G-~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~----tv~enl 114 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG-EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G----TFRKNL 114 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEE-EEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E----EHHHHH
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCe-EEEECCEECCcCChHHHhCCEEEEcCCcccCc-c----CHHHHh
Confidence 4456999999999999999999999999987 778 6654332211 112346999999998775 3 778887
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEEecchhh-----------HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCILDIDVQG-----------ARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g-----------~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+... ...+.+.+.++. ++..+++-.+.. +...++|+...+.+|+.+|++++||||++++|+..+
T Consensus 115 ~~~~~---~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~ 191 (390)
T 3gd7_A 115 DPNAA---HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191 (390)
T ss_dssp CTTCC---SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHH
T ss_pred hhccc---cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 64322 234444444432 111111111211 333455666777799999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
..+++.|+++. ...++++++|+++ ++..+++++.+.+|++++.+++.+++..|...+++.+.+
T Consensus 192 ~~l~~~l~~~~---------~~~tvi~vtHd~e-~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va~f~g 254 (390)
T 3gd7_A 192 QIIRRTLKQAF---------ADCTVILCEARIE-AMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIG 254 (390)
T ss_dssp HHHHHHHHTTT---------TTSCEEEECSSSG-GGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHHHHSS
T ss_pred HHHHHHHHHHh---------CCCEEEEEEcCHH-HHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHHhhcC
Confidence 88888776531 1358999999975 556799999999999999999999999999888887654
No 39
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.81 E-value=1.9e-22 Score=190.64 Aligned_cols=189 Identities=11% Similarity=0.051 Sum_probs=135.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+. ....++|+||++.+++.+ ++.|
T Consensus 20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~I~---------~~~~i~~v~q~~~~~~~~----tv~e 85 (253)
T 2nq2_C 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG-KIE---------VYQSIGFVPQFFSSPFAY----SVLD 85 (253)
T ss_dssp EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEE-EEE---------ECSCEEEECSCCCCSSCC----BHHH
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEE---------EeccEEEEcCCCccCCCC----CHHH
Confidence 33334445569999999999999999999999999999988 554 123489999998776544 7888
Q ss_pred HHHHhcccc-C----CcH---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 202 FASVHGNLY-G----TSV---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 202 ~~~~~~~~~-g----~~~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++.+....+ + ... +.+.+.++. +.....+-.+..+....+|+...+.+|+.+|++++||||++++|+.+++
T Consensus 86 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~ 165 (253)
T 2nq2_C 86 IVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQD 165 (253)
T ss_dssp HHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHH
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 887653221 1 111 223333332 2211112222333334566677778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
.+.+.+.++.++ ...++++++||++++...+++++.+.+|. +..+++.++..
T Consensus 166 ~l~~~l~~l~~~-------~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 166 IVLSLLIDLAQS-------QNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHHHHHHT-------SCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHHHHHHh-------cCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 999999886532 13488999999999999999999999998 76666665543
No 40
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.81 E-value=3.6e-22 Score=188.28 Aligned_cols=189 Identities=13% Similarity=0.117 Sum_probs=136.6
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
...+|++++|+||||||||||+++|+|++++. | .+........ ......++|+||++.+|+.+ ++.|++.
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~----tv~e~l~ 95 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-G-SIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAT----PVWHYLT 95 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-E-EEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTC----BHHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-e-EEEECCEECCcCCHHHHhceEEEECCCCccCCCC----cHHHHHH
Confidence 34589999999999999999999999999998 8 6654322211 11123489999998776655 7888887
Q ss_pred HhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCC-------hHHHHHHHHhCCCCcHHHHHH
Q 015825 205 VHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPS-------MEELEERLRARGTETEDQILK 276 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~-------lllLDEpl~~lD~~~~e~i~~ 276 (399)
+... +....+.+.+.++. +....++-.+..+....+|+...+.+|+.+|+ +++||||++++|+.+++.+.+
T Consensus 96 ~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~ 174 (249)
T 2qi9_C 96 LHQH-DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK 174 (249)
T ss_dssp TTCS-STTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHH
T ss_pred Hhhc-cCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHH
Confidence 6532 12224444444443 22111222223333345566777779999999 999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
.|+++.++ ..++++++||++.+...+++++.+.+|.++..+++.++..
T Consensus 175 ~l~~l~~~--------g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 175 ILSALSQQ--------GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp HHHHHHHT--------TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred HHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99886532 2388999999999999999999999999887777665544
No 41
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.80 E-value=2.8e-22 Score=190.79 Aligned_cols=199 Identities=13% Similarity=0.117 Sum_probs=139.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-cccCCeeEEecCh-HHHHHHHhhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-MEKDGVHYHFTER-SVMEKAIKDGKF 199 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-~~~~~i~yvfq~~-~lf~~~~~~~~~ 199 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+......... .....++|+||++ ..+..+ ++
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~----tv 96 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG-DVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE----RV 96 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCHHHHGGGEEEECSSGGGGCCCS----SH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEECCEECchHHhhhhEEEEeccchhhcCCC----cH
Confidence 33334455679999999999999999999999999999888 56543322110 1124589999985 344333 78
Q ss_pred HHHHHHhcccc-C--CcHHHHHHHHHc-CCc--eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 200 LEFASVHGNLY-G--TSVEAVEAVADA-GKR--CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 200 ~E~~~~~~~~~-g--~~~~~i~~~~~~-g~~--~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
.|++.+....+ . ...+.+.+.++. +.. ...+-.+..+....+|+...+.+|+.+|++++||||++++|+.+++.
T Consensus 97 ~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 176 (266)
T 2yz2_A 97 FDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 176 (266)
T ss_dssp HHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHH
Confidence 88887753322 1 113334444443 222 12222233333445666777789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.|+++.++ ..++|+++||++.+...+++++.+.+|.++..+++.+++..
T Consensus 177 l~~~l~~l~~~--------g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 177 LLRIVEKWKTL--------GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHHHHHHT--------TCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHc--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999886532 23889999999998888999999999988877766655533
No 42
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.79 E-value=3.9e-22 Score=191.06 Aligned_cols=203 Identities=13% Similarity=0.095 Sum_probs=137.8
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc------ccccCCeeEEecChHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR------AMEKDGVHYHFTERSVM 190 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~------~~~~~~i~yvfq~~~lf 190 (399)
++...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++..+
T Consensus 31 y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~ 109 (279)
T 2ihy_A 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG-TVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEK 109 (279)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTBCCC---CCHHHHHTTEEEECHHHHTT
T ss_pred ECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCe-EEEECCEEcccccCCHHHHcCcEEEEEcCcccc
Confidence 3334444444455669999999999999999999999999999988 6654332211 11234699999986542
Q ss_pred --HHHHhhhhhHHHHHHhcc----ccCC-cH---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHH
Q 015825 191 --EKAIKDGKFLEFASVHGN----LYGT-SV---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 191 --~~~~~~~~~~E~~~~~~~----~~g~-~~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
..+ ++.|++.+... .++. .. +.+.+.++. +.....+-.+..+....+|++..+.+|+.+|++++|
T Consensus 110 ~~~~l----tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlL 185 (279)
T 2ihy_A 110 FQEGE----RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLIL 185 (279)
T ss_dssp SCTTS----BHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cCCCC----CHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 122 67787766421 1221 11 122233322 111111112222333455667777899999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceE--EEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDH--ILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~--Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
|||++++|+.+++.+.+.|+++.++ + .++ ++++||++++...+++++.+.+|+++..+++.++..
T Consensus 186 DEPts~LD~~~~~~l~~~l~~l~~~-g-------~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 186 DEPAAGLDFIARESLLSILDSLSDS-Y-------PTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHH-C-------TTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred eCCccccCHHHHHHHHHHHHHHHHC-C-------CEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999887543 2 278 999999999888899999999999887777665554
No 43
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.79 E-value=1.4e-21 Score=180.15 Aligned_cols=181 Identities=13% Similarity=0.133 Sum_probs=126.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+........ .....++|+||++.+|+.+ ++.|
T Consensus 24 il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~~~-~~~~~i~~v~q~~~~~~~~----tv~e 97 (214)
T 1sgw_A 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG-EIIYNGVPIT-KVKGKIFFLPEEIIVPRKI----SVED 97 (214)
T ss_dssp EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEEGG-GGGGGEEEECSSCCCCTTS----BHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEhh-hhcCcEEEEeCCCcCCCCC----CHHH
Confidence 33334455569999999999999999999999999999888 6654332211 1234589999998776655 7778
Q ss_pred HHHHhccccC--CcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 202 FASVHGNLYG--TSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 202 ~~~~~~~~~g--~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
++.+....++ ...+.+.+.++. +.... +-.+..+....+|+...+.+|+.+|++++||||++++|+.+++.+.+.+
T Consensus 98 nl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l 176 (214)
T 1sgw_A 98 YLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 176 (214)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 8776533332 223444444443 22111 2223333344566677778999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
.++.++ +. ++++++|+++++...+++++.+.
T Consensus 177 ~~~~~~-g~-------tiiivtHd~~~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 177 LEILKE-KG-------IVIISSREELSYCDVNENLHKYS 207 (214)
T ss_dssp HHHHHH-HS-------EEEEEESSCCTTSSEEEEGGGGB
T ss_pred HHHHhC-CC-------EEEEEeCCHHHHHHhCCEEEEeC
Confidence 987543 22 88999999988776666655443
No 44
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.78 E-value=2.1e-21 Score=188.12 Aligned_cols=194 Identities=14% Similarity=0.116 Sum_probs=138.0
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
..+.++...+|++++|+||||||||||+++|+|+++|..| .+........ ...+..++|+||++.+|. ++
T Consensus 70 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~T 143 (306)
T 3nh6_A 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG-CIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-----DT 143 (306)
T ss_dssp EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEE-EEEETTEETTSBCHHHHHHTEEEECSSCCCCS-----EE
T ss_pred eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCc-EEEECCEEcccCCHHHHhcceEEEecCCccCc-----cc
Confidence 3334455679999999999999999999999999999988 6654322211 112346999999987663 28
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHc-CC-----------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADA-GK-----------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~-g~-----------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
+.|++.+....+ ..+.+.++++. +. ...++-....+...++|++..+.+|+.+|++++||||++++
T Consensus 144 v~eNi~~~~~~~--~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~L 221 (306)
T 3nh6_A 144 IADNIRYGRVTA--GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSAL 221 (306)
T ss_dssp HHHHHHTTSTTC--CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCC
T ss_pred HHHHHHhhcccC--CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 889988754322 23333333221 11 11111111112223455666777999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
|+.++..+++.|.++.. ..|+|+++|+++.+.. +++++.+.+|+++..+++.+++...
T Consensus 222 D~~~~~~i~~~l~~l~~---------~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~~ 279 (306)
T 3nh6_A 222 DTSNERAIQASLAKVCA---------NRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSRG 279 (306)
T ss_dssp CHHHHHHHHHHHHHHHT---------TSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcC---------CCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhcC
Confidence 99999999998887532 2389999999998865 9999999999999999888777543
No 45
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.78 E-value=8.8e-22 Score=187.87 Aligned_cols=193 Identities=16% Similarity=0.077 Sum_probs=132.9
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.++...+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++.+|+ . ++.|
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~----tv~e 111 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG-KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R----SFRE 111 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S----BHHH
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC-EEEECCEEcccCCHHHHhccEEEEecCCcccc-c----cHHH
Confidence 3445569999999999999999999999999999888 5554322211 111235899999987663 2 7888
Q ss_pred HHHHhccccCCcHHHHHHH---------HHc---CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAV---------ADA---GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~---------~~~---g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+....+.. ...+... ++. +....++-.+..+....+|++..+.+|+.+|++++||||++++|+.
T Consensus 112 nl~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~ 190 (271)
T 2ixe_A 112 NIAYGLTRTPT-MEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG 190 (271)
T ss_dssp HHHTTCSSCCC-HHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred HHhhhcccCCh-HHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 88775432221 1111111 111 1111112122223334556677778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
++..+.+.|.++.++ ...++|+++|+++.+.. +++++.+.+|.++..+++.++...
T Consensus 191 ~~~~i~~~l~~~~~~-------~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 191 NQLRVQRLLYESPEW-------ASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp HHHHHHHHHHHCTTT-------TTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-------cCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 999998888874321 13489999999988764 999999999999887877766543
No 46
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.77 E-value=1.9e-21 Score=183.13 Aligned_cols=195 Identities=15% Similarity=0.166 Sum_probs=135.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++.+|+ .
T Consensus 24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~---- 97 (247)
T 2ff7_A 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG-QVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R---- 97 (247)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S----
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c----
Confidence 34344455669999999999999999999999999999888 5554322111 111235899999987663 3
Q ss_pred hhHHHHHHhccccCCcHHHHHHHHHc-CCceEEe-----------cchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 198 KFLEFASVHGNLYGTSVEAVEAVADA-GKRCILD-----------IDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vld-----------ld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
++.|++.+... ....+.+.+.++. +...+++ -....+....+|+...+.+|+.+|++++||||+++
T Consensus 98 tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~ 175 (247)
T 2ff7_A 98 SIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA 175 (247)
T ss_dssp BHHHHHTTTCT--TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSC
T ss_pred cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 78888876421 1233333333221 1111110 00112222345566677799999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+|+.++..+.+.|+++. + ..++|+++|+++.+. .+++++.+.+|.++..+++.+++..|
T Consensus 176 LD~~~~~~i~~~l~~~~-~--------g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~ 234 (247)
T 2ff7_A 176 LDYESEHVIMRNMHKIC-K--------GRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSEP 234 (247)
T ss_dssp CCHHHHHHHHHHHHHHH-T--------TSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHHTST
T ss_pred CCHHHHHHHHHHHHHHc-C--------CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999998762 1 238999999998775 49999999999998888877777664
No 47
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.77 E-value=3.6e-18 Score=183.52 Aligned_cols=179 Identities=40% Similarity=0.632 Sum_probs=158.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEec-ChHHHHHHHhhhhhHHHHHHhccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFT-ERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq-~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
..+++++|+||+ |+||++.|....+..++..++||||+++..|.+|..|+|. +.+.|..++..+.|+|+..+.+++
T Consensus 529 ~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~ 605 (721)
T 2xkx_A 529 HYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHL 605 (721)
T ss_pred CCCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCcc
Confidence 468999999995 9999999999887677779999999999999999999999 999999999999999999999999
Q ss_pred cCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH-HHHhc
Q 015825 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE-EIKQG 288 (399)
Q Consensus 210 ~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~-~l~~~ 288 (399)
||++.+.+++.++.|+.+++|+++++++.++.....++++|+.+|+++.|.+ +.+|. +.+++++++.++.+ ++.+
T Consensus 606 YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~-l~~R~--t~~~~~~rl~~a~~~e~~~- 681 (721)
T 2xkx_A 606 YGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRI--TEEQARKAFDRATKLEQEF- 681 (721)
T ss_pred ceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhc-
Confidence 9999999999999999999999999998888666667999999999999988 88876 45678888888743 4433
Q ss_pred cCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 289 KSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 289 ~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
.+.||++|+|+++++|+..+..++....
T Consensus 682 --~~~fd~vi~Nd~l~~a~~~l~~~i~~~~ 709 (721)
T 2xkx_A 682 --TECFSAIVEGDSFEEIYHKVKRVIEDLS 709 (721)
T ss_pred --cccCcEEEECcCHHHHHHHHHHHHHhcc
Confidence 4578999999999999999999876543
No 48
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.77 E-value=4.3e-21 Score=180.17 Aligned_cols=188 Identities=15% Similarity=0.141 Sum_probs=130.7
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|+++|..| .+...... .....+..++|+||++.+|+ . ++.|++
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~----tv~enl 96 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG-EITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G----TIRENL 96 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBS-CEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E----EHHHHT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c----cHHHHH
Confidence 44569999999999999999999999999999888 55432211 11112345899999986653 2 788887
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEE-----------ecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCIL-----------DIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vl-----------dld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+... .....+.+.+.++. +...++ +-.+..+....+|+...+.+|+.+|++++||||++++|+.++
T Consensus 97 ~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~ 175 (243)
T 1mv5_A 97 TYGLE-GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE 175 (243)
T ss_dssp TSCTT-SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSC
T ss_pred hhhcc-CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 76411 12233444433322 111111 111112223345566677799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+.+.+.++. + ..++++++|+++.+. .+++++.+.+|.++..+++.++..
T Consensus 176 ~~i~~~l~~~~-~--------~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 176 SMVQKALDSLM-K--------GRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp CHHHHHHHHHH-T--------TSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHHHHHHHhc-C--------CCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999998764 1 238999999998774 599999999999887777666543
No 49
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.76 E-value=8.5e-21 Score=180.23 Aligned_cols=190 Identities=14% Similarity=0.101 Sum_probs=134.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-cccCCee-EEecChHHHHHHHhhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-MEKDGVH-YHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-~~~~~i~-yvfq~~~lf~~~~~~~~~ 199 (399)
+..+.+.... |++++|+||||||||||+++|+|++ |..| .+......... .....++ |+||++.+ .+ ++
T Consensus 20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G-~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~----tv 90 (263)
T 2pjz_A 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSG-NIFINGMEVRKIRNYIRYSTNLPEAYEI--GV----TV 90 (263)
T ss_dssp EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEE-EEEETTEEGGGCSCCTTEEECCGGGSCT--TS----BH
T ss_pred eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCc-EEEECCEECcchHHhhheEEEeCCCCcc--CC----cH
Confidence 3333445567 9999999999999999999999999 9888 55432211100 1134689 99998754 33 78
Q ss_pred HHHHHHhccccCCcHHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 200 LEFASVHGNLYGTSVEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
.|++.+....+....+.+.+.++. +.. ..++..+..+....+|+...+.+|+.+|++++||||++++|+.+++.+.+.
T Consensus 91 ~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 170 (263)
T 2pjz_A 91 NDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY 170 (263)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHH
Confidence 888776543334444555555443 221 112222333334456667777899999999999999999999998888888
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHH-HhhcccCCeeeecCCCcccc
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK-KHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~-~ii~~~~~~~~~~~~~~~~~ 331 (399)
|+++. . ++++++||++++...++ +++.+.+|.++..+++.++.
T Consensus 171 L~~~~----------~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 171 IKEYG----------K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp HHHSC----------S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHhc----------C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 87631 1 78899999999888899 99999999988877666554
No 50
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.76 E-value=1.2e-18 Score=157.58 Aligned_cols=183 Identities=39% Similarity=0.679 Sum_probs=118.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
.+|++++|+|||||||||++++|++.+.+..+..+.++++.+......+.+|+|++...|..+...+++.++..+.++.|
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY 83 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence 47899999999999999999999998855555445566666544445568899999888887766667777766666678
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
+.....+...+..+..+++|..+.+...++...+..+.+++.+|+.+++.+|+..|+..+.+.+.+++.....++..
T Consensus 84 g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~~--- 160 (207)
T 2j41_A 84 GTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEVEM--- 160 (207)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC---------------------------CGGGG---
T ss_pred CCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc---
Confidence 88888888878888889999877766666554456678888888889999999999877777888888765433332
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
...++++++|++++++...+.+++..
T Consensus 161 ~~~~d~vI~n~~~e~~~~~i~~~l~~ 186 (207)
T 2j41_A 161 MNLYDYVVVNDEVELAKNRIQCIVEA 186 (207)
T ss_dssp GGGCSEEEECSSHHHHHHHHHHHHHH
T ss_pred cccCCEEEECCCHHHHHHHHHHHHHH
Confidence 23568888888999999998887654
No 51
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.75 E-value=5.1e-21 Score=180.47 Aligned_cols=195 Identities=11% Similarity=0.102 Sum_probs=128.2
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhc--cCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKE--FPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~--~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~ 193 (399)
.+..+.+....+|++++|+||||||||||+++|+|+ ++|..| .+....... ......+++|+||++.+|+.+
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G-~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (250)
T 2d2e_A 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERG-EILLDGENILELSPDERARKGLFLAFQYPVEVPGV 95 (250)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEE-EEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSC
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCce-EEEECCEECCCCCHHHHHhCcEEEeccCCccccCC
Confidence 333334455669999999999999999999999998 677788 555432211 111124578999998776654
Q ss_pred HhhhhhHHHHHHhcc-ccC--CcH----HHHHHHHHc-CC-ceEEecchhh-HHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 194 IKDGKFLEFASVHGN-LYG--TSV----EAVEAVADA-GK-RCILDIDVQG-ARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~-~~g--~~~----~~i~~~~~~-g~-~~vldld~~g-~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.+++.+... .++ ... +.+.+.++. +. ..+.+-.+.. +....+|+...+.+|+.+|++++||||+
T Consensus 96 ----tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPt 171 (250)
T 2d2e_A 96 ----TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETD 171 (250)
T ss_dssp ----BHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGG
T ss_pred ----CHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 66666654321 111 111 122222222 22 1111222222 4444566677778999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHH-HHHhhcccCCeeeecCCCc
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN-LKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~-l~~ii~~~~~~~~~~~~~~ 328 (399)
+++|+.+++.+.+.|+++.+ ...++|+++||++.+... +++++.+.+|.++..+++.
T Consensus 172 s~LD~~~~~~l~~~l~~l~~--------~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 172 SGLDIDALKVVARGVNAMRG--------PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp GTTCHHHHHHHHHHHHHHCS--------TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred cCCCHHHHHHHHHHHHHHHh--------cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999988887532 134889999999888766 4999999999888766544
No 52
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.73 E-value=1.2e-20 Score=179.54 Aligned_cols=199 Identities=13% Similarity=0.044 Sum_probs=130.2
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc--CCcccceeeecCCCc-----cccccCCeeEEecChHHHHH
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~--~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~ 192 (399)
..+..+.+....+|++++|+||||||||||+++|+|+. +|..| .+....... ......+++|+||++.+|+.
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~ 111 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG-TVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 111 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEE-EEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCe-EEEECCEECCcCCHHHHhhCCEEEEccCcccccc
Confidence 34444444556799999999999999999999999984 56778 555432211 11112358999999876654
Q ss_pred HHhhhhhHHHHHHhc-cc---cC---CcHH----HHHHHHHc-CCc-eEEecchh-hHHHHHcCCcceeEEEEcCCChHH
Q 015825 193 AIKDGKFLEFASVHG-NL---YG---TSVE----AVEAVADA-GKR-CILDIDVQ-GARSVRASPLDAIFIFICPPSMEE 258 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~-~~---~g---~~~~----~i~~~~~~-g~~-~vldld~~-g~~~l~~~~~~~~~ili~~P~lll 258 (399)
+ ++.+++.+.. .. ++ .... .+.+.++. +.. .+.+-.+. .+....+|++..+.+|+.+|++++
T Consensus 112 ~----tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLl 187 (267)
T 2zu0_C 112 V----SNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCI 187 (267)
T ss_dssp C----BHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred c----cHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 4 4555543321 00 11 1222 23333332 111 11111111 133345566677789999999999
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHH-HHHhhcccCCeeeecCCCcccc
Q 015825 259 LEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN-LKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 259 LDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~-l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
||||++++|+.+++.+.+.|+++.+ ...++++++||++.+... +++++.+.+|+++..+++.++.
T Consensus 188 LDEPts~LD~~~~~~l~~~l~~l~~--------~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 188 LDESDSGLDIDALKVVADGVNSLRD--------GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp EESTTTTCCHHHHHHHHHHHHTTCC--------SSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh--------cCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999888876421 245899999999887665 7999999999988877766543
No 53
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.72 E-value=5.3e-19 Score=185.69 Aligned_cols=191 Identities=13% Similarity=0.077 Sum_probs=137.1
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+....+|++++|+||||||||||+++|+|+++|..| .+.....+. ....+..++|+||++.+|+ . ++.|+
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~----tv~en 436 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG-SICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D----TIANN 436 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC-EEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c----cHHHH
Confidence 344569999999999999999999999999999989 555432221 1112346899999987764 2 78888
Q ss_pred HHHhccccCCcHHHHHHHHHc-CCceEEec-----------chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 203 ASVHGNLYGTSVEAVEAVADA-GKRCILDI-----------DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~-g~~~vldl-----------d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+.+... .....+.+.++++. +...+++- ....+...++|+...+.+++.+|++++||||++++|+.+
T Consensus 437 i~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b5x_A 437 IAYAAE-GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515 (582)
T ss_pred HhccCC-CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 877531 12334445444432 11111110 011222335666777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
++.+.+.++++.+ ..|+++++|+++.+. .+|+++.+.+|+++..++++++...+
T Consensus 516 ~~~i~~~l~~~~~---------~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 569 (582)
T 3b5x_A 516 ERAIQAALDELQK---------NKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLAQD 569 (582)
T ss_pred HHHHHHHHHHHcC---------CCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999998887531 238999999998764 69999999999999888888776554
No 54
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.72 E-value=3.7e-20 Score=175.57 Aligned_cols=186 Identities=10% Similarity=0.061 Sum_probs=129.0
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|++++ .| .+........ ...+..++|+||++.+|+ . ++.+++
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G-~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~----tv~enl 113 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EG-DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E----TIKYNI 113 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EE-EEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E----EHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCC-Ce-EEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c----CHHHHH
Confidence 44569999999999999999999999999986 67 5554322211 112346899999987663 3 788888
Q ss_pred HHhccccCCcHHHHHHHHHc-CCce-----------EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRC-----------ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~-----------vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+... ....+.+.+.++. +... .++-.+..+...++|+...+.+|+.+|++++||||++++|+.++
T Consensus 114 ~~~~~--~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~ 191 (260)
T 2ghi_A 114 LYGKL--DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191 (260)
T ss_dssp HTTCT--TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHH
T ss_pred hccCC--CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 76421 1233333333322 1111 11111112223345556667799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
..+.+.|.++.+ ..++++++|+++.+. .+++++.+.+|.++..+++.+++.
T Consensus 192 ~~i~~~l~~l~~---------~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 192 YLFQKAVEDLRK---------NRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp HHHHHHHHHHTT---------TSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHhcC---------CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 999888887531 238899999998764 599999999999988787766653
No 55
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.70 E-value=4.4e-20 Score=171.82 Aligned_cols=178 Identities=15% Similarity=0.079 Sum_probs=122.1
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
....+|++++|+||||||||||+++|+|+++|..| .+.... .++|+||++.+|+ . ++.|++.+..
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g---------~i~~v~q~~~~~~-~----tv~enl~~~~ 93 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-KIKHSG---------RISFCSQFSWIMP-G----TIKENIIFGV 93 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEECS---------CEEEECSSCCCCS-B----CHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCcc-EEEECC---------EEEEEecCCcccC-C----CHHHHhhccC
Confidence 34468999999999999999999999999999988 554432 3899999976653 2 7788877642
Q ss_pred cccCCcHHHHHHHHHc-CCceEEec-----------chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 208 NLYGTSVEAVEAVADA-GKRCILDI-----------DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~-g~~~vldl-----------d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
.. ......+.++. +....++. ....+...++|+...+.+++.+|++++||||++++|+.+++.+.
T Consensus 94 ~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~ 170 (229)
T 2pze_A 94 SY---DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF 170 (229)
T ss_dssp CC---CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHH
T ss_pred Cc---ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHH
Confidence 21 11112222111 11100000 00122223455566677999999999999999999998888777
Q ss_pred HHH-HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 276 KRL-RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 276 ~~L-~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+ ..+. ...++++++|+++.+. .+++++.+.+|.++..+++.++...
T Consensus 171 ~~l~~~~~---------~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 171 ESCVCKLM---------ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp HHCCCCCT---------TTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHHTC
T ss_pred HHHHHHhh---------CCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHHhc
Confidence 653 3211 1348899999998875 5999999999998887776665543
No 56
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.70 E-value=4.3e-20 Score=172.75 Aligned_cols=181 Identities=13% Similarity=0.087 Sum_probs=123.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
....+|++++|+||||||||||+++|+|+++|..| .+.... .++|+||++.++ .+ ++.|++.+..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g---------~i~~v~Q~~~~~-~~----tv~enl~~~~ 90 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG-HVAIKG---------SVAYVPQQAWIQ-ND----SLRENILFGC 90 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEE-EEEECS---------CEEEECSSCCCC-SE----EHHHHHHTTS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECC---------EEEEEcCCCcCC-Cc----CHHHHhhCcc
Confidence 44569999999999999999999999999999888 555432 389999987432 33 7888887754
Q ss_pred cccCCcHHHHHHHHHcCCc-----------eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHH
Q 015825 208 NLYGTSVEAVEAVADAGKR-----------CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~g~~-----------~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~ 276 (399)
.........+.+.. +.. ..++-.+..+....+|+...+.+|+.+|++++||||++++|+.++..+.+
T Consensus 91 ~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 168 (237)
T 2cbz_A 91 QLEEPYYRSVIQAC--ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168 (237)
T ss_dssp CCCTTHHHHHHHHT--TCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH--hhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 32221111111111 110 01111112223334556667779999999999999999999988888887
Q ss_pred HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
.+.... ++ ....++++++|+++.+. .+++++.+.+|.++..+++.++..
T Consensus 169 ~l~~~~-~~-----~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 169 NVIGPK-GM-----LKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp HTTSTT-ST-----TTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHH-hh-----cCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHHhh
Confidence 774210 01 11348999999988764 689999999999888777666553
No 57
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.69 E-value=8.2e-17 Score=155.59 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=117.6
Q ss_pred CCCCceeccEEEEEe-cCCeeEEEEeeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhhhccCCCceEEE
Q 015825 29 CETTTVIGDKTYVIA-GSDESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCLW 101 (399)
Q Consensus 29 ~~~~~~vGD~v~~~~-~~~~~~i~~i~~r~~~~l~rp~~an~~------~~~~p~~~~~~l~~dr~L~~~~~~~~~~~i~ 101 (399)
....|.|||++.+.. .++...|.++.+| .+.++|+..+|+| .+.+|.+++..+ ++++..++..+++++|+
T Consensus 45 ~~~~pTiGd~~~~~~~~~~~~~iwD~qer-~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l--~~~l~~~~~~~~piilv 121 (301)
T 1u0l_A 45 QNLKIYVGDRVEYTPDETGSGVIENVLHR-KNLLTKPHVANVDQVILVVTVKMPETSTYII--DKFLVLAEKNELETVMV 121 (301)
T ss_dssp TTCCCCTTCEEEEECCCSSSEEEEEECCC-SCEETTTTEESCCEEEEEECSSTTCCCHHHH--HHHHHHHHHTTCEEEEE
T ss_pred cCCCCCCccEEEEEEcCCCeEEEEEEccc-cceeeccccccCCEEEEEEeCCCCCCCHHHH--HHHHHHHHHCCCCEEEE
Confidence 356799999998875 3346789999999 8999999999988 555677777788 89988777789999999
Q ss_pred EeCCCh--H-H---HHHHHHHhC--CeEEEeccC-cc-------CCCCcEEEEEcCCCCCHHHHHhhhhhccCCccccee
Q 015825 102 FLEVDT--P-Y---VREQKKVVG--AEVVAWSKG-VI-------GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV 165 (399)
Q Consensus 102 ~~k~D~--~-~---~~~l~~~~g--~~v~~~s~~-~~-------~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i 165 (399)
.||+|. + . .+.+.+.++ ++++.+|+. .. ...|++++|+||||||||||+|+|+|+..+..| .+
T Consensus 122 ~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G-~i 200 (301)
T 1u0l_A 122 INKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVS-EV 200 (301)
T ss_dssp ECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred EeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCCeEEEECCCCCcHHHHHHHhccccccccc-ce
Confidence 999994 1 2 334445566 889998876 22 248999999999999999999999999999888 44
Q ss_pred e-------ecCCCccccccCCeeEEecChH
Q 015825 166 S-------HTTRAPRAMEKDGVHYHFTERS 188 (399)
Q Consensus 166 ~-------~ttr~~~~~~~~~i~yvfq~~~ 188 (399)
. ++|+.........++|+||++.
T Consensus 201 ~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~ 230 (301)
T 1u0l_A 201 SEKLQRGRHTTTTAQLLKFDFGGYVVDTPG 230 (301)
T ss_dssp ---------CCCSCCEEECTTSCEEESSCS
T ss_pred ecccCCCCCceeeeEEEEcCCCCEEEECcC
Confidence 4 2444433332345789999875
No 58
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.69 E-value=5e-19 Score=186.35 Aligned_cols=195 Identities=15% Similarity=0.117 Sum_probs=136.1
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
..+.+....+|++++|+||||||||||+++|+|+++|..| .+.....+.. ...+..++|+||++.+|+ ++
T Consensus 360 l~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-----~t 433 (595)
T 2yl4_A 360 FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG-TISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-----CS 433 (595)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEE-EEEETTEETTTBCHHHHHHSEEEECSSCCCCS-----SB
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc-EEEECCEEhhhCCHHHHHhceEEEccCCcccC-----CC
Confidence 3334455679999999999999999999999999999988 6654332211 112345899999987663 28
Q ss_pred hHHHHHHhcccc-CCcHHHHHHHHHc-CCceEEe-----------cchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 199 FLEFASVHGNLY-GTSVEAVEAVADA-GKRCILD-----------IDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 199 ~~E~~~~~~~~~-g~~~~~i~~~~~~-g~~~vld-----------ld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
+.|++.+....+ +...+.+.+.++. +...+++ -....+...++|+...+.+++.+|++++||||+++
T Consensus 434 v~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~ 513 (595)
T 2yl4_A 434 IAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSA 513 (595)
T ss_dssp HHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSS
T ss_pred HHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccC
Confidence 889988754321 2345555554443 1111100 00011222345566667799999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+|+.+++.+.+.++++.+ ..|+++++|+++.+ ..+++++.+.+|+++..+++.++...
T Consensus 514 LD~~~~~~i~~~l~~~~~---------~~tvi~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 571 (595)
T 2yl4_A 514 LDAENEYLVQEALDRLMD---------GRTVLVIAHRLSTI-KNANMVAVLDQGKITEYGKHEELLSK 571 (595)
T ss_dssp CCHHHHHHHHHHHHHHHT---------TSEEEEECCCHHHH-HHSSEEEEEETTEEEEEECSCC----
T ss_pred CCHHHHHHHHHHHHHHhc---------CCEEEEEecCHHHH-HcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999987642 23899999999876 46999999999999988888877654
No 59
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.68 E-value=5.3e-19 Score=185.87 Aligned_cols=188 Identities=15% Similarity=0.120 Sum_probs=135.9
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|+++|..| .+.....+... ..+..++|+||++.+|. +++.||+
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G-~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~tv~eni 437 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERG-RVEVDELDVRTVKLKDLRGHISAVPQETVLFS-----GTIKENL 437 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEE-EEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-----EEHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCc-EEEECCEEcccCCHHHHHhheEEECCCCcCcC-----ccHHHHH
Confidence 34568999999999999999999999999999989 66544333221 11345899999987663 3788888
Q ss_pred HHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... ...+.+.+.++. |....++-....+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 438 ~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~ 515 (587)
T 3qf4_A 438 KWGRED--ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITE 515 (587)
T ss_dssp TTTCSS--CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHH
T ss_pred hccCCC--CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 765432 223333333221 111122211112233455666777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+++.++++. ...|+++++|+++.+. .+|+++.+++|+++..+++.++...
T Consensus 516 ~~i~~~l~~~~---------~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 516 KRILDGLKRYT---------KGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHHHHHHHHHS---------TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC---------CCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 99998887642 1348999999998764 7999999999999999998877654
No 60
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.67 E-value=5.5e-19 Score=185.43 Aligned_cols=189 Identities=15% Similarity=0.110 Sum_probs=135.0
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|+++|..| .+.....+.. ...+..++|+||++.+|+ +++.||+
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-----~tv~eni 435 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG-QILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-----DTVKENI 435 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE-EEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-----SBHHHHH
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCc-EEEECCEEhhhCCHHHHhhheEEEeCCCccCc-----ccHHHHH
Confidence 34568999999999999999999999999999988 6654332221 112346999999987663 2788988
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEEecch-----------hhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCILDIDV-----------QGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vldld~-----------~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... ...+.+.+.++. +....++--| ..+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 436 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~ 513 (578)
T 4a82_A 436 LLGRPT--ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 513 (578)
T ss_dssp GGGCSS--CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHH
T ss_pred hcCCCC--CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 775321 233444443322 1111111001 11223355666777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
..+++.++++.+ ..|+++++|+++.+. .+|+++.+.+|+++..++++++...+
T Consensus 514 ~~i~~~l~~~~~---------~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~el~~~~ 566 (578)
T 4a82_A 514 SIIQEALDVLSK---------DRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELIAKQ 566 (578)
T ss_dssp HHHHHHHHHHTT---------TSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHHHTT
T ss_pred HHHHHHHHHHcC---------CCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999888876431 248899999998764 59999999999999999988777554
No 61
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.67 E-value=5.8e-19 Score=185.43 Aligned_cols=190 Identities=15% Similarity=0.106 Sum_probs=135.6
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+....+|++++|+||||||||||+++|+|+++|..| .+.....+.. ...+..++|+||++.+|+ +++.|+
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-----~tv~en 436 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG-HILMDGHDLREYTLASLRNQVALVSQNVHLFN-----DTVANN 436 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE-EEEETTEETTTBCHHHHHHTEEEECSSCCCCS-----SBHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCC-eEEECCEEccccCHHHHHhhCeEEccCCcCCC-----CCHHHH
Confidence 344569999999999999999999999999999988 6654332211 112346899999987664 288899
Q ss_pred HHHhccccCCcHHHHHHHHHcC-CceEEecch-----------hhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 203 ASVHGNLYGTSVEAVEAVADAG-KRCILDIDV-----------QGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~g-~~~vldld~-----------~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+.+... .....+.+.++++.. ...+++--| ..+...++|+...+.+++.+|++++||||++++|+.+
T Consensus 437 i~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b60_A 437 IAYART-EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_dssp HHTTTT-SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHH
T ss_pred HhccCC-CCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 887531 123455555554431 111111001 1122234556667779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
++.+++.++++.+ ..|+++++|+++.+. .+++++.+.+|+++..+++.++...
T Consensus 516 ~~~i~~~l~~~~~---------~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 516 ERAIQAALDELQK---------NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHHHHHHHHHT---------TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhC---------CCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence 9999998887532 238999999998764 6999999999999988887776543
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.6e-18 Score=179.56 Aligned_cols=182 Identities=14% Similarity=0.052 Sum_probs=123.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
.+|++++|+||||||||||+++|+|+++|..|..+ ...+++|++|+...+.. .++.++........
T Consensus 376 ~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~----------~~~~i~~~~q~~~~~~~----~tv~e~~~~~~~~~ 441 (608)
T 3j16_B 376 SDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI----------PKLNVSMKPQKIAPKFP----GTVRQLFFKKIRGQ 441 (608)
T ss_dssp CTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC----------CSCCEEEECSSCCCCCC----SBHHHHHHHHCSST
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc----------cCCcEEEecccccccCC----ccHHHHHHHHhhcc
Confidence 35689999999999999999999999999888421 01247899987432211 13444432211111
Q ss_pred CCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015825 211 GTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGK 289 (399)
Q Consensus 211 g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~ 289 (399)
......+.+.++. +.....+-.+..+....+|++..+.+|+.+|++++||||++++|+.++..+.+.|+++..+.
T Consensus 442 ~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~---- 517 (608)
T 3j16_B 442 FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN---- 517 (608)
T ss_dssp TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHH----
T ss_pred cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC----
Confidence 1122222222221 11111111222233334556666778999999999999999999999999999999876443
Q ss_pred CCCcceEEEeCCCHHHHHHHHHHhhcccC--CeeeecCCCccccCC
Q 015825 290 SSGIFDHILYNDKLEECYENLKKHLGLDG--SIATNHQTSPKGIDL 333 (399)
Q Consensus 290 ~~~~~t~Viv~hdleea~~~l~~ii~~~~--~~~~~~~~~~~~~~~ 333 (399)
..++++++||++++...+++++.+.+ |.+...++|.++++.
T Consensus 518 ---g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 518 ---KKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp ---TCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred ---CCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 23899999999999999999999875 677888888877754
No 63
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.65 E-value=8.5e-19 Score=184.69 Aligned_cols=189 Identities=15% Similarity=0.133 Sum_probs=134.5
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|+++|..| .+.....+.. ...+..++|+||++.+|+ +++.||+
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G-~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~tv~eni 449 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG-QILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-----TTVKENL 449 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE-EEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-----SBHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe-EEEECCEEhhhCCHHHHHhceEEEeCCCcccc-----ccHHHHH
Confidence 34568999999999999999999999999999988 6654332221 112335899999987663 3888988
Q ss_pred HHhccccCCcHHHHHHHHHcC-CceEEecchh-----------hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADAG-KRCILDIDVQ-----------GARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g-~~~vldld~~-----------g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... ...+.+.++++.. ....++--|. .+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 450 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~ 527 (598)
T 3qf4_B 450 KYGNPG--ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTE 527 (598)
T ss_dssp HSSSTT--CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHH
T ss_pred hcCCCC--CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 775321 2223333332211 1111110111 1122346667777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
..+++.+.++.+ ..|+++++|+++.+. .+|+++.+.+|+++..+++.++....
T Consensus 528 ~~i~~~l~~~~~---------~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 580 (598)
T 3qf4_B 528 KSIQAAMWKLME---------GKTSIIIAHRLNTIK-NADLIIVLRDGEIVEMGKHDELIQKR 580 (598)
T ss_dssp HHHHHHHHHHHT---------TSEEEEESCCTTHHH-HCSEEEEECSSSEEECSCHHHHHHTT
T ss_pred HHHHHHHHHHcC---------CCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999998887531 348999999998764 59999999999999999988777543
No 64
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.65 E-value=2.6e-18 Score=178.66 Aligned_cols=180 Identities=13% Similarity=0.068 Sum_probs=122.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh-ccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH-GNL 209 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~-~~~ 209 (399)
.+|++++|+||||||||||+++|+|+++|..| .+.. ...++|+||+...++.+ ++.+++... ...
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G-~i~~---------~~~i~~v~Q~~~~~~~~----tv~~~~~~~~~~~ 375 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-KIEW---------DLTVAYKPQYIKADYEG----TVYELLSKIDASK 375 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBC-CCCC---------CCCEEEECSSCCCCCSS----BHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEE---------CceEEEEecCCcCCCCC----cHHHHHHhhhccC
Confidence 48999999999999999999999999999888 4432 12489999986543222 444444322 111
Q ss_pred cCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015825 210 YGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQG 288 (399)
Q Consensus 210 ~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~ 288 (399)
+. ....+.+.++. +.....+-.+..+....+|++..+.+++.+|++++||||++++|+.+++.+.+.|+++.++.
T Consensus 376 ~~-~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~--- 451 (538)
T 1yqt_A 376 LN-SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN--- 451 (538)
T ss_dssp HT-CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH---
T ss_pred CC-HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC---
Confidence 11 12222222221 11001111122222334556666778999999999999999999999999999999875432
Q ss_pred cCCCcceEEEeCCCHHHHHHHHHHhhcccC--CeeeecCCCccccC
Q 015825 289 KSSGIFDHILYNDKLEECYENLKKHLGLDG--SIATNHQTSPKGID 332 (399)
Q Consensus 289 ~~~~~~t~Viv~hdleea~~~l~~ii~~~~--~~~~~~~~~~~~~~ 332 (399)
..++++++||++++...+++++.+.+ +.+...++|.++..
T Consensus 452 ----g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 452 ----EKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp ----TCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred ----CCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 23889999999999999999998874 45555677766553
No 65
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.64 E-value=3.2e-18 Score=180.19 Aligned_cols=180 Identities=14% Similarity=0.074 Sum_probs=122.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh-ccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH-GNL 209 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~-~~~ 209 (399)
.+|++++|+||||||||||+++|+|+++|..| .+.. ...++|+||+...+..+ ++.+++... ...
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G-~I~~---------~~~i~~v~Q~~~~~~~~----tv~e~~~~~~~~~ 445 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-KVEW---------DLTVAYKPQYIKAEYEG----TVYELLSKIDSSK 445 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBS-CCCC---------CCCEEEECSSCCCCCSS----BHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEE---------eeEEEEEecCccCCCCC----cHHHHHHhhhccC
Confidence 47999999999999999999999999999888 4432 12489999986543222 454544332 000
Q ss_pred cCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015825 210 YGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQG 288 (399)
Q Consensus 210 ~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~ 288 (399)
+. ....+.+.++. +.....+-.+..+....+|++..+.+|+.+|++++||||++++|+.++..+.+.|+++.++.
T Consensus 446 ~~-~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~--- 521 (607)
T 3bk7_A 446 LN-SNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN--- 521 (607)
T ss_dssp HH-CHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHT---
T ss_pred CC-HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC---
Confidence 11 11222222222 11111111222333344566667779999999999999999999999999999999875432
Q ss_pred cCCCcceEEEeCCCHHHHHHHHHHhhcccC--CeeeecCCCccccC
Q 015825 289 KSSGIFDHILYNDKLEECYENLKKHLGLDG--SIATNHQTSPKGID 332 (399)
Q Consensus 289 ~~~~~~t~Viv~hdleea~~~l~~ii~~~~--~~~~~~~~~~~~~~ 332 (399)
..++++++||++++...+++++.+.+ +.....++|.++..
T Consensus 522 ----g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 522 ----EKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp ----TCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred ----CCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 23889999999999999999988874 55555677766553
No 66
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.64 E-value=5.5e-19 Score=170.01 Aligned_cols=179 Identities=15% Similarity=0.086 Sum_probs=120.8
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
+.+....+|++++|+||||||||||+++|+|+++|..| .+.... .++|+||++.+|+ . ++.|++.
T Consensus 56 ~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g---------~i~~v~Q~~~l~~-~----tv~enl~ 120 (290)
T 2bbs_A 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-KIKHSG---------RISFCSQNSWIMP-G----TIKENII 120 (290)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEE-EEECCS---------CEEEECSSCCCCS-S----BHHHHHH
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECC---------EEEEEeCCCccCc-c----cHHHHhh
Confidence 33445569999999999999999999999999999888 554422 3899999976654 2 6777765
Q ss_pred HhccccCCcHHHHHHHHHc-CCceEEec-----------chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 205 VHGNLYGTSVEAVEAVADA-GKRCILDI-----------DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~-g~~~vldl-----------d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
.. .+ ........++. +....++. ....+....+|+...+.+|+.+|++++||||++++|+.++.
T Consensus 121 -~~-~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~ 196 (290)
T 2bbs_A 121 -GV-SY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 196 (290)
T ss_dssp -TT-CC--CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred -Cc-cc--chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHH
Confidence 21 11 11112211111 11000000 00112223345566677999999999999999999998888
Q ss_pred HHHHHH-HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 273 QILKRL-RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 273 ~i~~~L-~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
.+.+.+ ..+. ...++++++|+++.+. .+++++.+.+|.++..+++.++..
T Consensus 197 ~i~~~ll~~~~---------~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 197 EIFESCVCKLM---------ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHHCCCCCT---------TTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHhh---------CCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence 777643 2211 1348999999998774 599999999999988787766643
No 67
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.62 E-value=1.5e-17 Score=172.86 Aligned_cols=169 Identities=17% Similarity=0.136 Sum_probs=116.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
..+|++++|+||||||||||+++|+|+++|..| .+... ...++|++|....... .++.+++.+....
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~--------~~~i~~~~q~~~~~~~----~tv~~~l~~~~~~ 357 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEG-SVTPE--------KQILSYKPQRIFPNYD----GTVQQYLENASKD 357 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBC-CEESS--------CCCEEEECSSCCCCCS----SBHHHHHHHHCSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEEC--------CeeeEeechhcccccC----CCHHHHHHHhhhh
Confidence 458999999999999999999999999999999 55421 1247898887432211 2555655443211
Q ss_pred c-CCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015825 210 Y-GTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287 (399)
Q Consensus 210 ~-g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~ 287 (399)
+ ......+.+.++. +.....+-.+..+....+|++..+.+++.+|++++||||++++|+.++..+.+.|+++.++.
T Consensus 358 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~-- 435 (538)
T 3ozx_A 358 ALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER-- 435 (538)
T ss_dssp TTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHT--
T ss_pred ccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC--
Confidence 1 1111222222211 11111112233333345666777779999999999999999999999999999999876542
Q ss_pred ccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 288 GKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 288 ~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
..++++++||++++...+++++.+.+
T Consensus 436 -----g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 436 -----KAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp -----TCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred -----CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 34889999999999999999998875
No 68
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.58 E-value=8e-18 Score=191.28 Aligned_cols=191 Identities=14% Similarity=0.114 Sum_probs=139.8
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
...+|+.++|+||||||||||+++|.+++.|..| .|.....+. ....+..++|++|++.+|. +++.+|+.
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-----gTIreNI~ 1174 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFYDTLGG-EIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-----CSIAENII 1174 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSS-EEEETTEETTTBCHHHHHTTEEEECSSCCCCS-----EEHHHHHS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCccCCCC-EEEECCEEhhhCCHHHHHhheEEECCCCEeeC-----ccHHHHHh
Confidence 3469999999999999999999999999999999 665433222 1223456999999998774 48899987
Q ss_pred HhccccCCcHHHHHHHHHcC------------CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 205 VHGNLYGTSVEAVEAVADAG------------KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g------------~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
|...-...+.+++.++++.. ....+.-.-..+...++|+...+.+++.+|++++|||+|+++|++++.
T Consensus 1175 ~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~ 1254 (1321)
T 4f4c_A 1175 YGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEK 1254 (1321)
T ss_dssp SSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHH
Confidence 75322234556666555431 111111000012223456667777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
.+++.|+++ ...+|+++++|.+.. +..+|+++++++|+++..|++.+++..++
T Consensus 1255 ~Iq~~l~~~---------~~~~TvI~IAHRLsT-i~~aD~I~Vld~G~IvE~Gth~eLl~~~g 1307 (1321)
T 4f4c_A 1255 VVQEALDRA---------REGRTCIVIAHRLNT-VMNADCIAVVSNGTIIEKGTHTQLMSEKG 1307 (1321)
T ss_dssp HHHHHHTTT---------SSSSEEEEECSSSST-TTTCSEEEEESSSSEEEEECHHHHHHCC-
T ss_pred HHHHHHHHH---------cCCCEEEEeccCHHH-HHhCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 999888763 235699999998754 45799999999999999999999887653
No 69
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.58 E-value=2.3e-17 Score=187.09 Aligned_cols=190 Identities=17% Similarity=0.162 Sum_probs=136.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
..+|++++|+||||||||||+++|.|+++|..| .+.....+.. ...+..++|+||++.+|. +++.||+.+
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-----~ti~eNi~~ 1129 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG-SVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-----CSIAENIAY 1129 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEE-EEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-----SBHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCEEcccCCHHHHHhceEEECCCCcccc-----ccHHHHHhc
Confidence 358999999999999999999999999999988 6654332221 122356999999986553 388899877
Q ss_pred hccccCCcHHHHHHHHHc-CCceEEecchh-----------hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 206 HGNLYGTSVEAVEAVADA-GKRCILDIDVQ-----------GARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~-g~~~vldld~~-----------g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
.........+.+.+.++. +...+++--+. .+...++|+...+.+++.+|++++||||++++|+.+++.
T Consensus 1130 ~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~ 1209 (1284)
T 3g5u_A 1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKV 1209 (1284)
T ss_dssp CCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 543333344444443332 11111110111 122234566667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+++.++++. ..+|+++++|+++.+ ..+|+++.+.+|+++..+++.++....+
T Consensus 1210 i~~~l~~~~---------~~~tvi~isH~l~~i-~~~dri~vl~~G~i~~~g~~~~l~~~~g 1261 (1284)
T 3g5u_A 1210 VQEALDKAR---------EGRTCIVIAHRLSTI-QNADLIVVIQNGKVKEHGTHQQLLAQKG 1261 (1284)
T ss_dssp HHHHHHHHS---------SSSCEEEECSCTTGG-GSCSEEEEEETBEEEEEECHHHHHHSCS
T ss_pred HHHHHHHhC---------CCCEEEEEecCHHHH-HcCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 998887531 245899999999886 4599999999999999999888776543
No 70
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.55 E-value=6.4e-17 Score=183.49 Aligned_cols=189 Identities=15% Similarity=0.157 Sum_probs=134.5
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|.|+++|..| .+.....+.. ...+..++|++|++.+|. +++.||+
T Consensus 411 l~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G-~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-----~ti~eNi 484 (1284)
T 3g5u_A 411 LKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG-MVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-----TTIAENI 484 (1284)
T ss_dssp EEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEE-EEEETTEEGGGSCHHHHHHHEEEECSSCCCCS-----SCHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEHHhCCHHHHHhheEEEcCCCccCC-----ccHHHHH
Confidence 44569999999999999999999999999999888 6654332211 111235899999987663 3888998
Q ss_pred HHhccccCCcHHHHHHHHHcC-CceEEecchh-----------hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADAG-KRCILDIDVQ-----------GARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g-~~~vldld~~-----------g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... ...+.+.++++.. ....+.--+. .+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 485 ~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~ 562 (1284)
T 3g5u_A 485 RYGRED--VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562 (1284)
T ss_dssp HHHCSS--CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHH
T ss_pred hcCCCC--CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 876432 2344444433321 1110000011 1222345666677799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
..+++.++.+. ...|+++++|+++.+. .+|+++.+.+|+++..+++.++...+
T Consensus 563 ~~i~~~l~~~~---------~~~t~i~itH~l~~i~-~~d~i~vl~~G~i~~~g~~~~l~~~~ 615 (1284)
T 3g5u_A 563 AVVQAALDKAR---------EGRTTIVIAHRLSTVR-NADVIAGFDGGVIVEQGNHDELMREK 615 (1284)
T ss_dssp HHHHHHHHHHH---------TTSEEEEECSCHHHHT-TCSEEEECSSSCCCCEECHHHHHHTT
T ss_pred HHHHHHHHHHc---------CCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHhCC
Confidence 88888887642 1348999999998875 49999999999999989888776554
No 71
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.54 E-value=1.1e-16 Score=181.96 Aligned_cols=189 Identities=16% Similarity=0.169 Sum_probs=138.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+||||||||||++.|.|+++|..| .+.....+.+. ..+..++|++|++.+|. +++.||+
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G-~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~-----~TI~eNI 512 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKG-KITIDGVDVRDINLEFLRKNVAVVSQEPALFN-----CTIEENI 512 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEE-EEEETTEETTTSCHHHHHHHEEEECSSCCCCS-----EEHHHHH
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhccccccccC-cccCCCccchhccHHHHhhcccccCCcceeeC-----CchhHHH
Confidence 34569999999999999999999999999999999 66543322221 12235899999987664 4889999
Q ss_pred HHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.|.... .+.+++.++++. |....+.-.-..+...++|+...+.+++.+|++++|||||+++|..++
T Consensus 513 ~~g~~~--~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te 590 (1321)
T 4f4c_A 513 SLGKEG--ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE 590 (1321)
T ss_dssp HTTCTT--CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTH
T ss_pred hhhccc--chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHH
Confidence 876432 244555554432 111111100001122356667777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
..+++.|..+.+ ..|+|+++|.+. ++..+|+++++++|+++..|+..++....
T Consensus 591 ~~i~~~l~~~~~---------~~T~iiiaHrls-~i~~aD~Iivl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 591 GIVQQALDKAAK---------GRTTIIIAHRLS-TIRNADLIISCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp HHHHHHHHHHHT---------TSEEEEECSCTT-TTTTCSEEEEEETTEEEEEECHHHHHTTT
T ss_pred HHHHHHHHHHhC---------CCEEEEEcccHH-HHHhCCEEEEeeCCeeeccCCHHHHHHhh
Confidence 999999987532 338999999886 55689999999999999999998887654
No 72
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.52 E-value=5.3e-14 Score=140.60 Aligned_cols=150 Identities=17% Similarity=0.285 Sum_probs=120.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
..+++++|+|||| +||.+.|....+..++ .+||+++..+.+|..|+|.
T Consensus 230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~----~~tr~pR~gE~dG~~Y~Fv------------------------- 277 (391)
T 3tsz_A 230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQ----IAKSEPRDAGTDQRSSGII------------------------- 277 (391)
T ss_dssp SSCCCEEEESTTH---HHHHHHHHHHCTTTEE----ECCCCCCCSSSCCC--CCC-------------------------
T ss_pred CCCCEEEEECCCH---HHHHHHHHhhCccccc----cccCCCCCcccCCccCCcC-------------------------
Confidence 4789999999998 8999999988776555 2688899999999999875
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH-HHHhcc
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE-EIKQGK 289 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~-~l~~~~ 289 (399)
+.+.+++.++.|+.|+||+++++++.++...+.++++|+.+|+++.|.++...+..++++.+++++..+.+ ++..
T Consensus 278 --~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a~~~e~~~-- 353 (391)
T 3tsz_A 278 --RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNN-- 353 (391)
T ss_dssp --CHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHH--
T ss_pred --cHHHHHHHHHcCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhc--
Confidence 46778888889999999999999999998888899999999999999986444444555667777766532 2222
Q ss_pred CCCcceEEEeCCCHH-HHHHHHHHhhccc
Q 015825 290 SSGIFDHILYNDKLE-ECYENLKKHLGLD 317 (399)
Q Consensus 290 ~~~~~t~Viv~hdle-ea~~~l~~ii~~~ 317 (399)
.+.||++|+|++++ .|+..+..++...
T Consensus 354 -~~~fd~vivNd~l~~~a~~~l~~ii~~~ 381 (391)
T 3tsz_A 354 -HHLFTTTINLNSMNDGWYGALKEAIQQQ 381 (391)
T ss_dssp -GGGCSEEEECCTTCCHHHHHHHHHHHHH
T ss_pred -cccCcEEEECCCcHHHHHHHHHHHHHHh
Confidence 35789999999998 7999999887654
No 73
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.50 E-value=4.3e-14 Score=143.55 Aligned_cols=152 Identities=16% Similarity=0.274 Sum_probs=114.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
..+++++|+||||+| |++.|....+..++ +++|| ++..+.+|..|+|
T Consensus 222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~---s~~TR-pR~gE~dG~~Y~F-------------------------- 268 (468)
T 3shw_A 222 GFLRPVTIFGPIADV---AREKLAREEPDIYQ---IAKSE-PRDAGTDQRSSGI-------------------------- 268 (468)
T ss_dssp SSCCCEEEESTTHHH---HHHHHHHHCTTTEE---ECCCB-C----------CB--------------------------
T ss_pred CCCCEEEEECCCHHH---HHHHHHHhCCCcee---eecCC-CCCcccccccCCc--------------------------
Confidence 478999999999999 99999988876665 24688 8888888888877
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH-HHHhcc
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE-EIKQGK 289 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~-~l~~~~ 289 (399)
++.+.++++++.|+.|+||+++++++.++...+.+++||+.+|+++.|.++...+..++++.+++++..+.+ +...
T Consensus 269 -Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a~~~e~~~-- 345 (468)
T 3shw_A 269 -IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNN-- 345 (468)
T ss_dssp -CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHH--
T ss_pred -ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhh--
Confidence 578888888999999999999999999998888899999999999999875444444555677777776532 2222
Q ss_pred CCCcceEEEeCCCH-HHHHHHHHHhhcccCC
Q 015825 290 SSGIFDHILYNDKL-EECYENLKKHLGLDGS 319 (399)
Q Consensus 290 ~~~~~t~Viv~hdl-eea~~~l~~ii~~~~~ 319 (399)
.+.||+||+|+++ +.|+..+..++.....
T Consensus 346 -~~~fD~vIvNddl~d~a~~~L~~ii~~~~~ 375 (468)
T 3shw_A 346 -HHLFTTTINLNSMNDGWYGALKEAIQQQQN 375 (468)
T ss_dssp -GGGCSEEEECBTTBCHHHHHHHHHHHHHHT
T ss_pred -hccCCEEEECCCcHHHHHHHHHHHHHHhcC
Confidence 3578999999999 5999999998876543
No 74
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.50 E-value=6.1e-16 Score=162.80 Aligned_cols=177 Identities=14% Similarity=0.063 Sum_probs=114.7
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCccccee--------eecCCCccc------cccCCeeEEecChHHHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV--------SHTTRAPRA------MEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i--------~~ttr~~~~------~~~~~i~yvfq~~~lf~~~~ 194 (399)
...+|++++|+||||||||||+++|+|+++|..|... ......... .....+++++|....++...
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 192 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAV 192 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTC
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhc
Confidence 4569999999999999999999999999999888421 000111000 01124677887654433211
Q ss_pred hhhhhHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 195 KDGKFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
.+++.+++..... . ..+.+.++. +.....+-.+..+....+|++..+.+|+.+|++++||||++++|+.++..
T Consensus 193 -~~tv~e~l~~~~~-~----~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~ 266 (607)
T 3bk7_A 193 -KGKVRELLKKVDE-V----GKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLK 266 (607)
T ss_dssp -CSBHHHHHHHTCC-S----SCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHH
T ss_pred -cccHHHHhhhhHH-H----HHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHH
Confidence 1245555432111 1 112222222 22111222222333345566777779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
+.+.|+++.++ ..++|+++||++.+...+++++.+.++
T Consensus 267 l~~~L~~l~~~--------g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 267 VARVIRRLANE--------GKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHT--------TCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHhc--------CCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999887532 238999999999998888998888653
No 75
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.49 E-value=1e-15 Score=159.21 Aligned_cols=180 Identities=14% Similarity=0.079 Sum_probs=115.1
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee---------ecCCCcc------ccccCCeeEEecCh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS---------HTTRAPR------AMEKDGVHYHFTER 187 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~---------~ttr~~~------~~~~~~i~yvfq~~ 187 (399)
..+.+ ...+|++++|+||||||||||+++|+|.++|..|. +. ....... .....++++++|..
T Consensus 38 l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~ 115 (538)
T 1yqt_A 38 LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG-DNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV 115 (538)
T ss_dssp EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT-TCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCG
T ss_pred ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc-cCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhh
Confidence 33343 45699999999999999999999999999998884 20 0111100 00112467888765
Q ss_pred HHHHHHHhhhhhHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 188 SVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 188 ~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
..++... .+++.+++..... . ..+.+.++. +.....+-.+..+....+|++..+.+|+.+|++++||||++++
T Consensus 116 ~~~~~~~-~~~v~e~~~~~~~-~----~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~L 189 (538)
T 1yqt_A 116 DLIPKAV-KGKVIELLKKADE-T----GKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYL 189 (538)
T ss_dssp GGSGGGC-CSBHHHHHHHHCS-S----SCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC
T ss_pred hhcchhh-hccHHHHHhhhhH-H----HHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 4433211 1134444332111 1 112222222 2211112122223334556667777999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
|+.+.+.+.+.|+++.++ ..++|+++||++++...+++++.+.+
T Consensus 190 D~~~~~~l~~~L~~l~~~--------g~tvi~vsHd~~~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 190 DIRQRLNAARAIRRLSEE--------GKSVLVVEHDLAVLDYLSDIIHVVYG 233 (538)
T ss_dssp CHHHHHHHHHHHHHHHHT--------TCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 999999999999887532 34899999999999888999888764
No 76
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.47 E-value=9.8e-16 Score=163.40 Aligned_cols=86 Identities=10% Similarity=0.082 Sum_probs=70.4
Q ss_pred HcCCcceeEEEEcCCC--hHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc-
Q 015825 240 RASPLDAIFIFICPPS--MEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL- 316 (399)
Q Consensus 240 ~~~~~~~~~ili~~P~--lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~- 316 (399)
.+|++..+.+|+.+|+ +++||||++++|+.+...+.+.|+++.++ ..++|+++||++.+ ..+++++.+
T Consensus 207 e~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~--------g~tvi~vtHd~~~~-~~~d~ii~l~ 277 (670)
T 3ux8_A 207 EAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL--------GNTLIVVEHDEDTM-LAADYLIDIG 277 (670)
T ss_dssp HHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT--------TCEEEEECCCHHHH-HHCSEEEEEC
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc--------CCEEEEEeCCHHHH-hhCCEEEEec
Confidence 4555666678999888 99999999999999999999999987532 34899999999865 469999988
Q ss_pred -----cCCeeeecCCCccccCCC
Q 015825 317 -----DGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 317 -----~~~~~~~~~~~~~~~~~p 334 (399)
.+|.++..+++.++...|
T Consensus 278 ~g~~~~~G~i~~~g~~~~~~~~~ 300 (670)
T 3ux8_A 278 PGAGIHGGEVVAAGTPEEVMNDP 300 (670)
T ss_dssp SSSGGGCCSEEEEECHHHHHTCT
T ss_pred ccccccCCEEEEecCHHHHhcCc
Confidence 788888888877766554
No 77
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.41 E-value=4.3e-15 Score=154.29 Aligned_cols=173 Identities=12% Similarity=0.036 Sum_probs=103.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee-----------ecCCCccc------cccCCeeEEecChHHHHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-----------HTTRAPRA------MEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~-----------~ttr~~~~------~~~~~i~yvfq~~~lf~~ 192 (399)
..+|++++|+||||||||||+++|+|++.|..| .+. ...+.... ....++...++.....+.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G-~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFG-DPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASK 100 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTT-CTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC-ccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhh
Confidence 358999999999999999999999999999888 331 11111000 000112222222211111
Q ss_pred HHhhhhhHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
. ..+++.+++..... . .. +.+.++. +.....+-.+..+....+|++..+.+++.+|++++||||++++|+.+.
T Consensus 101 ~-~~~~v~~~l~~~~~-~-~~---~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~ 174 (538)
T 3ozx_A 101 F-LKGTVNEILTKIDE-R-GK---KDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRER 174 (538)
T ss_dssp T-CCSBHHHHHHHHCC-S-SC---HHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred h-ccCcHHHHhhcchh-H-HH---HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 0 01122222211100 0 01 1112211 111111222222333345666777799999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
..+.+.|+++.+ ..++|+++||++++...+++++.+.+
T Consensus 175 ~~l~~~l~~l~~---------g~tii~vsHdl~~~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 175 MNMAKAIRELLK---------NKYVIVVDHDLIVLDYLTDLIHIIYG 212 (538)
T ss_dssp HHHHHHHHHHCT---------TSEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHhC---------CCEEEEEEeChHHHHhhCCEEEEecC
Confidence 888888887531 23899999999999988998887764
No 78
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.40 E-value=4.8e-15 Score=162.08 Aligned_cols=174 Identities=14% Similarity=0.088 Sum_probs=114.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecCh-HHHHHHHhhhhhHHHHHHh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTER-SVMEKAIKDGKFLEFASVH 206 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~-~lf~~~~~~~~~~E~~~~~ 206 (399)
+...+|++++|+||||||||||+++|++.. ..|... . . ...++|++|+. ..++.+ ++.+++.+
T Consensus 456 l~I~~Ge~v~LiGpNGsGKSTLLk~LagG~--i~g~~~---~---~---~~~~~~v~q~~~~~~~~l----tv~e~l~~- 519 (986)
T 2iw3_A 456 LRLKRARRYGICGPNGCGKSTLMRAIANGQ--VDGFPT---Q---E---ECRTVYVEHDIDGTHSDT----SVLDFVFE- 519 (986)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHHTC--STTCCC---T---T---TSCEEETTCCCCCCCTTS----BHHHHHHT-
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC--cCCCcc---c---c---ceeEEEEcccccccccCC----cHHHHHHH-
Confidence 345699999999999999999999999521 122111 0 0 01246777653 233333 66666654
Q ss_pred ccccCCcHHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 015825 207 GNLYGTSVEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284 (399)
Q Consensus 207 ~~~~g~~~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~ 284 (399)
..++. ...+.+.++. +.. ...+-.+..+...++++...+.+++.+|++++||||++++|+.+++.+.+.|++
T Consensus 520 -~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---- 593 (986)
T 2iw3_A 520 -SGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---- 593 (986)
T ss_dssp -TCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----
T ss_pred -hhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----
Confidence 22232 4444444433 110 111111222233345666777799999999999999999999998888888775
Q ss_pred HHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee-ecCCCccc
Q 015825 285 IKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT-NHQTSPKG 330 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~-~~~~~~~~ 330 (399)
. ..++|+++||++.+...+++++.+.+|.++ ..+++.++
T Consensus 594 --~-----g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 594 --C-----GITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp --S-----CSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred --C-----CCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence 1 238999999999999999999999999876 34554443
No 79
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.40 E-value=5.7e-15 Score=155.31 Aligned_cols=178 Identities=12% Similarity=0.038 Sum_probs=104.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-ccccC--------------Ce--eEEecChHHHHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-AMEKD--------------GV--HYHFTERSVMEK 192 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-~~~~~--------------~i--~yvfq~~~lf~~ 192 (399)
..+|++++|+||||||||||+++|+|+++|..| .+........ ..... .. .+.++....++.
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G-~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLG-RFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT-TTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCc-eEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 358999999999999999999999999999888 3311000000 00000 00 111111111111
Q ss_pred HHhh--hhhHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 193 AIKD--GKFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 193 ~~~~--~~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
.... .++.++.... .......+.+.++. +.....+-.+..+....+|++..+.+++.+|++++||||++++|+.
T Consensus 179 ~~~~~~~~v~~~l~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~ 255 (608)
T 3j16_B 179 AIKGPVQKVGELLKLR---MEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVK 255 (608)
T ss_dssp HCSSSSSHHHHHHHHH---CCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHH
T ss_pred hhcchhhHHHHHHhhh---hhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHH
Confidence 0000 0111111111 11122333333322 2211112122223333455666777999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
+...+.+.++++.++ ..++|+++|+++++...+++++.+.++
T Consensus 256 ~~~~l~~~l~~l~~~--------g~tvi~vtHdl~~~~~~~drv~vl~~~ 297 (608)
T 3j16_B 256 QRLNAAQIIRSLLAP--------TKYVICVEHDLSVLDYLSDFVCIIYGV 297 (608)
T ss_dssp HHHHHHHHHHGGGTT--------TCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 888888888875421 348899999999999999998888654
No 80
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.36 E-value=1.5e-14 Score=154.24 Aligned_cols=88 Identities=10% Similarity=0.055 Sum_probs=71.6
Q ss_pred HHHcCCcceeEEEEcCC---ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 238 SVRASPLDAIFIFICPP---SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 238 ~l~~~~~~~~~ili~~P---~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
...+|++..+.+|+.+| ++++||||++++|+.+...+.+.++++.++ ..++|+++||++.+ ..+++++
T Consensus 546 gG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~--------g~tvi~vtHd~~~~-~~~d~i~ 616 (670)
T 3ux8_A 546 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN--------GDTVLVIEHNLDVI-KTADYII 616 (670)
T ss_dssp HHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--------TCEEEEECCCHHHH-TTCSEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--------CCEEEEEeCCHHHH-HhCCEEE
Confidence 34456666677888776 499999999999999999999999887532 34899999999876 5699999
Q ss_pred cc------cCCeeeecCCCccccCCC
Q 015825 315 GL------DGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 315 ~~------~~~~~~~~~~~~~~~~~p 334 (399)
.+ .+|+++..+++.++...+
T Consensus 617 ~l~~~~g~~~G~i~~~g~~~~~~~~~ 642 (670)
T 3ux8_A 617 DLGPEGGDRGGQIVAVGTPEEVAEVK 642 (670)
T ss_dssp EEESSSGGGCCEEEEEECHHHHHTCT
T ss_pred EecCCcCCCCCEEEEecCHHHHHhCC
Confidence 99 889999999888776554
No 81
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=99.35 E-value=1.3e-12 Score=126.48 Aligned_cols=173 Identities=20% Similarity=0.296 Sum_probs=114.4
Q ss_pred CcEEEEEcCCCCCHHH---HHhhhhhccCCcccceeeecCCCccccccCCeeEE--ecChHHHHHHHhhhhhHHHHHHhc
Q 015825 133 EKPVVITGPSGVGKGT---LISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYH--FTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 133 g~~~~l~GpsG~GKST---l~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yv--fq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
=++++|+||+++|--+ +-++|...++..|+..|.+| |........+..+. +.....+......+.+.|.
T Consensus 142 ~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~t-R~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~ev----- 215 (337)
T 4dey_A 142 MRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT-RVTADISLAKRSVLNNPSKHAIIERSNTRSSLAEV----- 215 (337)
T ss_dssp SCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEE-EECSCGGGC-------------------CCCHHHH-----
T ss_pred CCceEEECCccccchhHHHHHHHHHHhhHHhcCCccceE-eecchhhhcchhhhhcccchhhhcccccccchHHH-----
Confidence 4789999999999875 34556666666666566544 44444433332221 2222233332333333321
Q ss_pred cccCCcHHHHHHHHHcCCceEEecchh-hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 015825 208 NLYGTSVEAVEAVADAGKRCILDIDVQ-GARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK 286 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~g~~~vldld~~-g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~ 286 (399)
....+.+.+..+.|+.++||++++ |++.++...+.++++|+.+|+++.|.+|+.+|+....+.+..++.....++.
T Consensus 216 ---~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~~~~rl~~al~~ae~E~~ 292 (337)
T 4dey_A 216 ---QSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQ 292 (337)
T ss_dssp ---HHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHHHHTTHHHHHHHHHHHHH
T ss_pred ---HhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Confidence 122334444455789999999998 9999999899999999999999999999999997666667766666554443
Q ss_pred hccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 287 QGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 287 ~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
. ..+.||+||+|+|++.|+..+..++..
T Consensus 293 ~--~~~~FDyvIVNDdLe~A~~~L~~iI~~ 320 (337)
T 4dey_A 293 C--PPELFDVILDENQLEDACEHLADYLEA 320 (337)
T ss_dssp S--CGGGCSEEECCSSHHHHHHHHHHHHHH
T ss_pred h--CcccCCEEEECCCHHHHHHHHHHHHHH
Confidence 3 246889999999999999999987754
No 82
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=99.34 E-value=4.4e-12 Score=122.06 Aligned_cols=147 Identities=20% Similarity=0.357 Sum_probs=111.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
...++++|+|| +|+|+++.|+..+|..||..++. ++. +..+.|+
T Consensus 143 ~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~-~r~----------------------i~~~~fi---------- 186 (308)
T 3kfv_A 143 SFKRPVVILGP---VADIAMQKLTAEMPDQFEIAETV-SRT----------------------DSPSKII---------- 186 (308)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC-------------------------------CC----------
T ss_pred CCCCeEEEeCc---cHHHHHHHHHHhCcccccccccc-ccc----------------------ccCCCee----------
Confidence 45689999999 69999999999999999865541 110 1111222
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
+.+.+++.++.|+.|+||++++|++.++...+.+++||+.+|+++.|.++...+..++++.+++++.... +++. ..
T Consensus 187 --s~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~-eiE~-~~ 262 (308)
T 3kfv_A 187 --KLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQ-KLRK-HS 262 (308)
T ss_dssp --CHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCCCEEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHH-HHHH-HH
T ss_pred --cHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCCCEEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH-HHHH-hh
Confidence 7888999999999999999999999999888889999999999999998744444445556665555542 2321 11
Q ss_pred CCcceEEE-eCCCHHHHHHHHHHhhccc
Q 015825 291 SGIFDHIL-YNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 291 ~~~~t~Vi-v~hdleea~~~l~~ii~~~ 317 (399)
.+.||+|| +|+|++.|+..+..++...
T Consensus 263 ~~~FD~vI~VNDdle~A~~~L~~iI~~~ 290 (308)
T 3kfv_A 263 SHLFTATIPLNGTSDTWYQELKAIIREQ 290 (308)
T ss_dssp GGGCSEEEEECSSSTHHHHHHHHHHHHH
T ss_pred hccCcEEEEcCCCHHHHHHHHHHHHHHh
Confidence 35789999 9999999999999987654
No 83
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.34 E-value=1e-14 Score=133.60 Aligned_cols=140 Identities=17% Similarity=0.095 Sum_probs=81.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee--cCCCccccccCCeeEEecChHHHHHHHhh-hhhHHHHHHhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH--TTRAPRAMEKDGVHYHFTERSVMEKAIKD-GKFLEFASVHG 207 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~--ttr~~~~~~~~~i~yvfq~~~lf~~~~~~-~~~~E~~~~~~ 207 (399)
.+|++++|+||||||||||+++|+|+ +|..| .+.. .+... ......++|+||++ .+.+..- ...... ...
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G-~I~~~~~~~~~-~~~~~~ig~v~q~~--~enl~~~~~~~~~~--~~~ 92 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK-QVSRIILTRPA-VEAGEKLGFLPGTL--NEKIDPYLRPLHDA--LRD 92 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT-SCSEEEEEECS-CCTTCCCCSSCC--------CTTTHHHHHH--HTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC-eeeeEEecCCc-hhhhcceEEecCCH--HHHHHHHHHHHHHH--HHH
Confidence 37999999999999999999999999 88888 4321 11111 11234589999975 1111000 000000 000
Q ss_pred cccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015825 208 NLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~ 287 (399)
. .....+.+.++.+. ..++++..+.+++.+|++++||||+++ ++..+.+.|.++ .
T Consensus 93 ~---~~~~~~~~~l~~gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~---- 147 (208)
T 3b85_A 93 M---VEPEVIPKLMEAGI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G---- 147 (208)
T ss_dssp T---SCTTHHHHHHHTTS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C----
T ss_pred h---ccHHHHHHHHHhCC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c----
Confidence 0 11122333333211 345566677799999999999999999 677777777653 1
Q ss_pred ccCCCcceEEEeCCCHHHHH
Q 015825 288 GKSSGIFDHILYNDKLEECY 307 (399)
Q Consensus 288 ~~~~~~~t~Viv~hdleea~ 307 (399)
...+++ ++||++++.
T Consensus 148 ----~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 148 ----FGSKMV-VTGDITQVD 162 (208)
T ss_dssp ----TTCEEE-EEEC-----
T ss_pred ----CCCEEE-EECCHHHHh
Confidence 134777 999987654
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.32 E-value=5.1e-14 Score=153.97 Aligned_cols=75 Identities=12% Similarity=-0.024 Sum_probs=58.8
Q ss_pred HcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 240 RASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 240 ~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
+++++..+.+++.+|++++||||++++|+.+...+.+.|+++ ..++|+++||++.+...+++++.+.+|
T Consensus 906 QkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~-----------g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 906 QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-----------EGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC-----------SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh-----------CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 345556667899999999999999999988777776665431 138899999999998889999999888
Q ss_pred eeeecC
Q 015825 320 IATNHQ 325 (399)
Q Consensus 320 ~~~~~~ 325 (399)
+++..+
T Consensus 975 ~Iv~~G 980 (986)
T 2iw3_A 975 RMTPSG 980 (986)
T ss_dssp BCCC--
T ss_pred EEEEeC
Confidence 776544
No 85
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.21 E-value=6.9e-14 Score=142.59 Aligned_cols=177 Identities=10% Similarity=-0.056 Sum_probs=109.7
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCccc-ceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG-FSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH 206 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g-~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~ 206 (399)
....+|++++|+||||||||||+++|+|+..+..| ..+..... + ..+++|+||+..+|+.. ...++.+++ +.
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-~----~~~i~~vpq~~~l~~~~-~~~tv~eni-~~ 205 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-P----QQPIFTVPGCISATPIS-DILDAQLPT-WG 205 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-T----TSCSSSCSSCCEEEECC-SCCCTTCTT-CS
T ss_pred eEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-c----cCCeeeeccchhhcccc-cccchhhhh-cc
Confidence 34458999999999999999999999999988877 53433221 1 23478899886543211 011444444 32
Q ss_pred ccc-cCCcHHHHHHHHHcCCce--EEec----chhhHHHHHcCCcceeEE--EEcCCCh----HHHHH-HHHhCCCCcHH
Q 015825 207 GNL-YGTSVEAVEAVADAGKRC--ILDI----DVQGARSVRASPLDAIFI--FICPPSM----EELEE-RLRARGTETED 272 (399)
Q Consensus 207 ~~~-~g~~~~~i~~~~~~g~~~--vldl----d~~g~~~l~~~~~~~~~i--li~~P~l----llLDE-pl~~lD~~~~e 272 (399)
... .+... . ...... .+.+ ++..+....++++..+.+ |+.+|++ ++||| |++++|+. .+
T Consensus 206 ~~~~~~~~~---~---~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~ 278 (460)
T 2npi_A 206 QSLTSGATL---L---HNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LA 278 (460)
T ss_dssp CBCBSSCCS---S---CCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CH
T ss_pred cccccCcch---H---HHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HH
Confidence 221 11100 0 000011 1111 122233334556666667 8999999 99999 99999987 44
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHH------HHHHHHHH-----hhccc-CCeeeecCCCccc
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLE------ECYENLKK-----HLGLD-GSIATNHQTSPKG 330 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdle------ea~~~l~~-----ii~~~-~~~~~~~~~~~~~ 330 (399)
.+.+.++ ++ ..++++++|+.+ ++...+++ ++.+. +|.++ .+++.++
T Consensus 279 ~l~~l~~----~~-------~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 279 ELHHIIE----KL-------NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp HHHHHHH----HT-------TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred HHHHHHH----Hh-------CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 4443333 22 237889999766 77788898 89988 88877 6665443
No 86
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.17 E-value=1.5e-12 Score=115.03 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
.+|++++|+||||||||||++++.+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc
Confidence 4799999999999999999998654
No 87
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.10 E-value=6.5e-11 Score=118.84 Aligned_cols=136 Identities=12% Similarity=0.104 Sum_probs=80.7
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~ 212 (399)
+.+++|+||||||||||+|+|+|+.++..| .+........ + .+|+||.. .++.+ ++.++..+... ..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~G-sI~~~g~~~t---~--~~~v~q~~-~~~~l----tv~D~~g~~~~--~~ 135 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEG-AAKTGVVEVT---M--ERHPYKHP-NIPNV----VFWDLPGIGST--NF 135 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTT-SCCCCC-------C--CCEEEECS-SCTTE----EEEECCCGGGS--SC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCc-eEEECCeecc---e--eEEecccc-ccCCe----eehHhhcccch--HH
Confidence 349999999999999999999999998888 4332111111 1 26788874 33333 44444333211 11
Q ss_pred cHHHHHHHH--Hc-CCceEEecc--hhh----HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 213 SVEAVEAVA--DA-GKRCILDID--VQG----ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 213 ~~~~i~~~~--~~-g~~~vldld--~~g----~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
......+.+ .. .....++.. .+. ++.+.. ...++.+.+..|+++++|||++++|+.+++++.+.++++.
T Consensus 136 ~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~-~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 136 PPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM-MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp CHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHH-TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHh-cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 122221111 11 111123322 111 111222 2346677788999999999999999999999999998875
No 88
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.08 E-value=1.8e-12 Score=141.43 Aligned_cols=86 Identities=14% Similarity=0.083 Sum_probs=69.6
Q ss_pred cCCcceeEEEEcC---CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc-
Q 015825 241 ASPLDAIFIFICP---PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL- 316 (399)
Q Consensus 241 ~~~~~~~~ili~~---P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~- 316 (399)
+|++..+.+|+.. |++++||||++++|+.+.+.+++.|.++.++ ..++|+++||++.+. .+++++.+
T Consensus 811 rQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~--------G~TVIvI~HdL~~i~-~ADrIivLg 881 (916)
T 3pih_A 811 AQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR--------GNTVIVIEHNLDVIK-NADHIIDLG 881 (916)
T ss_dssp HHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--------TCEEEEECCCHHHHT-TCSEEEEEE
T ss_pred HHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHHH-hCCEEEEec
Confidence 4444455566654 4699999999999999999999999887532 338999999998764 59999999
Q ss_pred -----cCCeeeecCCCccccCCCc
Q 015825 317 -----DGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 317 -----~~~~~~~~~~~~~~~~~p~ 335 (399)
.+|+++..++|+++...|.
T Consensus 882 p~gg~~~G~Iv~~Gtpeel~~~~~ 905 (916)
T 3pih_A 882 PEGGKEGGYIVATGTPEEIAKNPH 905 (916)
T ss_dssp SSSGGGCCEEEEEESHHHHHSCTT
T ss_pred CCCCCCCCEEEEEcCHHHHHhCCc
Confidence 8899999999999888774
No 89
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.99 E-value=4.9e-11 Score=111.14 Aligned_cols=178 Identities=16% Similarity=0.215 Sum_probs=94.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhh---hccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh--
Q 015825 132 VEKPVVITGPSGVGKGTLISMLM---KEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH-- 206 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~---~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~-- 206 (399)
++++++|+|||||||||++++|+ |...+..| .+..............+.+++++..+++.. ++.+++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G-~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~v~~~l~~~l~ 100 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSG-HFLRENIKASTEVGEMAKQYIEKSLLVPDH----VITRLMMSELE 100 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHH-HHHHHHHHTTCHHHHHHHHHHHTTCCCCHH----HHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHH-HHHHHHHhcCChHHHHHHHHHHcCCCCCHH----HHHHHHHHHHH
Confidence 46899999999999999999999 87766555 322110000000000012223332222222 222322210
Q ss_pred ---c---cccC--CcHHHHHHHHH---cCCceEEecchhhH-HHHHcCCc----ceeEEE-EcCCChHHHH----HHHHh
Q 015825 207 ---G---NLYG--TSVEAVEAVAD---AGKRCILDIDVQGA-RSVRASPL----DAIFIF-ICPPSMEELE----ERLRA 265 (399)
Q Consensus 207 ---~---~~~g--~~~~~i~~~~~---~g~~~vldld~~g~-~~l~~~~~----~~~~il-i~~P~lllLD----Epl~~ 265 (399)
+ .+.+ ........... -+..+.+++++... ..+..+.. ..+.++ +.+|+++++| ||+++
T Consensus 101 ~~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ 180 (246)
T 2bbw_A 101 NRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQ 180 (246)
T ss_dssp TCTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBC
T ss_pred hcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCccccccccccccccc
Confidence 0 0122 22222222221 12344556655432 23322211 122455 8899999999 99999
Q ss_pred CCCCcHHHHHHHHHHHHHHHH----hccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 266 RGTETEDQILKRLRNAKEEIK----QGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~----~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
+|+.+++.+++++..+.++.. .+...+.+..|-.+.+ ++++..+.+++.
T Consensus 181 ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~ 233 (246)
T 2bbw_A 181 QEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFS 233 (246)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHH
Confidence 999999999999988765522 2221222222333335 888888877664
No 90
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.99 E-value=6.9e-11 Score=114.09 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=84.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-c---------ccccCCeeEEecChH-HHHHHHhhhh
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-R---------AMEKDGVHYHFTERS-VMEKAIKDGK 198 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-~---------~~~~~~i~yvfq~~~-lf~~~~~~~~ 198 (399)
..+|++++|+|||||||||+++.|++.+.+..| .+....... + .....+++|++|+.. .++.+ +
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g-~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~----~ 171 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT-KVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT----V 171 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH----H
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH----H
Confidence 457999999999999999999999999988777 444322111 1 111346899999877 66655 5
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHcCCceEEec------chhhHHHHHcCCcceeEEEEcCCC--hHHHHHHHHhCCCCc
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADAGKRCILDI------DVQGARSVRASPLDAIFIFICPPS--MEELEERLRARGTET 270 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldl------d~~g~~~l~~~~~~~~~ili~~P~--lllLDEpl~~lD~~~ 270 (399)
+.+++.+... .+ ....++|. .......+.+++.....+++..|+ +++|| |++++|+.+
T Consensus 172 v~e~l~~~~~-~~------------~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~ 237 (302)
T 3b9q_A 172 LSKAVKRGKE-EG------------YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 237 (302)
T ss_dssp HHHHHHHHHH-TT------------CSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred HHHHHHHHHH-cC------------CcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHH
Confidence 5566554211 11 01122221 111222334344444446778899 99999 999998643
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYND 301 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h 301 (399)
+ ++.+.++. ..+.+++||
T Consensus 238 ~------~~~~~~~~-------g~t~iiiTh 255 (302)
T 3b9q_A 238 Q------AREFNEVV-------GITGLILTK 255 (302)
T ss_dssp H------HHHHHHHT-------CCCEEEEEC
T ss_pred H------HHHHHHhc-------CCCEEEEeC
Confidence 2 22322221 348899999
No 91
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.97 E-value=1.2e-11 Score=133.84 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=68.8
Q ss_pred HcCCcceeEEEEcC---CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 240 RASPLDAIFIFICP---PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 240 ~~~~~~~~~ili~~---P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.+|++..+.+|+.+ |++++||||++++|+...+.+.+.|.++.++ ..++|+++||++++ ..+++++.+
T Consensus 735 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~--------G~tVIvisHdl~~i-~~aDrii~L 805 (842)
T 2vf7_A 735 EAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA--------GNTVIAVEHKMQVV-AASDWVLDI 805 (842)
T ss_dssp HHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--------TCEEEEECCCHHHH-TTCSEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--------CCEEEEEcCCHHHH-HhCCEEEEE
Confidence 34445555577775 6899999999999999999999999886532 33899999999998 779999999
Q ss_pred ------cCCeeeecCCCccccCCC
Q 015825 317 ------DGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 317 ------~~~~~~~~~~~~~~~~~p 334 (399)
.+|+++..+++.++...+
T Consensus 806 ~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 806 GPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp CSSSGGGCCSEEEEECHHHHTTCT
T ss_pred CCCCCCCCCEEEEEcCHHHHHhCc
Confidence 688888888887776654
No 92
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.95 E-value=9.1e-11 Score=118.86 Aligned_cols=176 Identities=13% Similarity=0.099 Sum_probs=109.5
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCC---Cccc---------cccCCeeEEecC-hHHHHHHHh
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR---APRA---------MEKDGVHYHFTE-RSVMEKAIK 195 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr---~~~~---------~~~~~i~yvfq~-~~lf~~~~~ 195 (399)
...+|++++|+||||||||||+++|+++..+..| .+..... .... ...+.++|+||+ ...++++
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G-~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~-- 229 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVI-VVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRM-- 229 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEE-EEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHH--
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccCCCeE-EEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHH--
Confidence 3458999999999999999999999999998877 4443222 1111 122457899985 4456665
Q ss_pred hhhhHHHHHHhccccCCcHHHHHHHHHcCCce--EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRC--ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~--vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
++.++..+...++. ..+..+ +++. ...+.... ++...+ +.+|++ ++++|+.+...
T Consensus 230 --~v~~~~~~~ae~~~----------~~~~~v~~~ld~-l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~ 286 (438)
T 2dpy_A 230 --QGAAYATRIAEDFR----------DRGQHVLLIMDS-LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAK 286 (438)
T ss_dssp --HHHHHHHHHHHHHH----------TTTCEEEEEEEC-HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHH
T ss_pred --HHHHHHHHHHHHHH----------hCCCCHHHHHHh-HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHH
Confidence 56666554332221 012222 2232 11111111 222222 667766 88999999888
Q ss_pred HHHHHHHHHHHHHhccCCCc----ceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 274 ILKRLRNAKEEIKQGKSSGI----FDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~----~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+.+.+.++...- ...+. .++++++||++ ...+++++.+.+|.++..+++.+....|.
T Consensus 287 l~~ll~r~~~~~---~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~~~~Pa 347 (438)
T 2dpy_A 287 LPALVERAGNGI---HGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEAGHYPA 347 (438)
T ss_dssp HHHHHTTCSCCS---TTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHTTCSSC
T ss_pred HHHHHHHHHhcc---CCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHccCCCC
Confidence 888887643200 00121 37778999987 45689999999999998877766665553
No 93
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.94 E-value=2.1e-11 Score=132.63 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=68.8
Q ss_pred HcCCcceeEEEEcC---CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 240 RASPLDAIFIFICP---PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 240 ~~~~~~~~~ili~~---P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.+|++..+.+|+.+ |++++||||++++|+.+...+.+.|.++.++ ..++|+++||++++ ..+++++.+
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~--------G~TVIvisHdl~~i-~~aDrIivL 920 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN--------GDTVLVIEHNLDVI-KTADYIIDL 920 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--------TCEEEEECCCHHHH-TTCSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--------CCEEEEEcCCHHHH-HhCCEEEEE
Confidence 44555555677765 4899999999999999999999999886532 33899999999986 579999999
Q ss_pred ------cCCeeeecCCCccccCCCc
Q 015825 317 ------DGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 317 ------~~~~~~~~~~~~~~~~~p~ 335 (399)
.+|+++..+++.++...+.
T Consensus 921 ~p~gG~~~G~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 921 GPEGGDRGGQIVAVGTPEEVAEVKE 945 (972)
T ss_dssp CSSSTTSCCSEEEEESHHHHHTCTT
T ss_pred cCCCCCCCCEEEEecCHHHHHhCch
Confidence 6788888888887776543
No 94
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.93 E-value=3e-10 Score=109.65 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=81.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecC----CCcc------ccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT----RAPR------AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~tt----r~~~------~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
+|++++|+||||||||||+++|++++.+..| .+.... +... .....+++|+||.+..++.. ++.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g-~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~----~v~~ 175 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGK-KVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAA----LAYD 175 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTC-CEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHH----HHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHH----HHHH
Confidence 6899999999999999999999999988777 444321 2110 01134688999987766655 4445
Q ss_pred HHHHhccccCCcHHHHHHHHHcCCceEEec------chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 202 FASVHGNLYGTSVEAVEAVADAGKRCILDI------DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~g~~~vldl------d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
++.+... ......++|. .......+++++.....+++..|+..+| .+|+.+...+.
T Consensus 176 ~v~~~~~-------------~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~ 237 (304)
T 1rj9_A 176 AVQAMKA-------------RGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGL 237 (304)
T ss_dssp HHHHHHH-------------HTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHH
T ss_pred HHHHHHh-------------CCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHH
Confidence 5433210 0111223331 1111122222222222345555653322 56666666777
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDK 302 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hd 302 (399)
+.+..+.++.. .+.+++||+
T Consensus 238 ~~~~~~~~~~~-------~t~iivTh~ 257 (304)
T 1rj9_A 238 EQAKKFHEAVG-------LTGVIVTKL 257 (304)
T ss_dssp HHHHHHHHHHC-------CSEEEEECT
T ss_pred HHHHHHHHHcC-------CcEEEEECC
Confidence 77776655432 388999996
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.92 E-value=2.5e-11 Score=112.34 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
.+|++++|+||||||||||+++|++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4899999999999999999999993
No 96
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.92 E-value=2e-10 Score=113.24 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=85.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-c---------ccccCCeeEEecChH-HHHHHHhhhh
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-R---------AMEKDGVHYHFTERS-VMEKAIKDGK 198 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-~---------~~~~~~i~yvfq~~~-lf~~~~~~~~ 198 (399)
..+|++++|+||||||||||++.|++.+.+..| .+....... + ...+.+++|++|+.. .++.. +
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G-~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~----t 228 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT-KVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT----V 228 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH----H
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCC-EEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh----h
Confidence 457999999999999999999999999988767 444322111 1 112346899999876 66655 5
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHcCCceEEec------chhhHHHHHcCCcceeEEEEcCCC--hHHHHHHHHhCCCCc
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADAGKRCILDI------DVQGARSVRASPLDAIFIFICPPS--MEELEERLRARGTET 270 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldl------d~~g~~~l~~~~~~~~~ili~~P~--lllLDEpl~~lD~~~ 270 (399)
+.+++.+... .+ ....++|. .......+.+++.....+++..|+ +++|| |++++|+.+
T Consensus 229 v~e~l~~~~~-~~------------~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~ 294 (359)
T 2og2_A 229 LSKAVKRGKE-EG------------YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 294 (359)
T ss_dssp HHHHHHHHHH-TT------------CSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred HHHHHHHHHh-CC------------CHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH
Confidence 5565554311 00 11123331 111222334344444456778899 99999 999998653
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYND 301 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h 301 (399)
+ ++.+.+.. ..+.+++||
T Consensus 295 ~------~~~~~~~~-------g~t~iiiTh 312 (359)
T 2og2_A 295 Q------AREFNEVV-------GITGLILTK 312 (359)
T ss_dssp H------HHHHHHHT-------CCCEEEEES
T ss_pred H------HHHHHHhc-------CCeEEEEec
Confidence 2 22222222 348899999
No 97
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.88 E-value=2.5e-11 Score=132.49 Aligned_cols=86 Identities=12% Similarity=0.084 Sum_probs=68.1
Q ss_pred HcCCcceeEEEEcC---CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 240 RASPLDAIFIFICP---PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 240 ~~~~~~~~~ili~~---P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.+|++..+.+|+.+ |++++||||++++|+.+.+.+.+.|.++.++ ..++|+++||++++ ..+++++.+
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~--------G~TVIvisHdl~~i-~~aDrIivL 938 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK--------GNTVIVIEHNLDVI-KTSDWIIDL 938 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--------TCEEEEECCCHHHH-TTCSEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--------CCEEEEEcCCHHHH-HhCCEEEEE
Confidence 34455555677765 4899999999999999999999999886532 33899999999986 579999999
Q ss_pred ------cCCeeeecCCCccccCCC
Q 015825 317 ------DGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 317 ------~~~~~~~~~~~~~~~~~p 334 (399)
.+|.++..+++.++...+
T Consensus 939 ~p~gg~~~G~Iv~~G~~~el~~~~ 962 (993)
T 2ygr_A 939 GPEGGAGGGTVVAQGTPEDVAAVP 962 (993)
T ss_dssp ESSSTTSCSEEEEEECHHHHHHCT
T ss_pred CCCcCCCCCEEEEecCHHHHHhCC
Confidence 688888888887776554
No 98
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.86 E-value=1.7e-10 Score=121.60 Aligned_cols=145 Identities=10% Similarity=0.101 Sum_probs=79.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCC-cccceeeecC-------CCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPS-MFGFSVSHTT-------RAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH 206 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~-~~g~~i~~tt-------r~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~ 206 (399)
.++|+||||||||||+++|+|+..| ..| .+.... ..........++|+||+..+++.+ ++.+++.+.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG-~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~----tv~e~i~~~ 121 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSG-IVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDAS----EVEKEINKA 121 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHH----HHHTTHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCC-eEEEcCEEEEEecCCccccceeEEeeecccccCCCHH----HHHHHHHHH
Confidence 4999999999999999999999877 566 332111 010111223578999987776655 566665543
Q ss_pred ccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHH------HHhCCCCcHHHHHHHHHH
Q 015825 207 GNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEER------LRARGTETEDQILKRLRN 280 (399)
Q Consensus 207 ~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEp------l~~lD~~~~e~i~~~L~~ 280 (399)
...++. .+.. +..............|++.++||| ++++|+.....+.+.+..
T Consensus 122 ~~~~~~----------~~~~------------~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~ 179 (608)
T 3szr_A 122 QNAIAG----------EGMG------------ISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK 179 (608)
T ss_dssp HHHHHC----------SSSC------------CCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred HHHhcC----------Cccc------------cchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence 211100 0000 001111122234456888888998 999999988888888877
Q ss_pred HHHHHHhccCCCcceEEEeCCCHH----HHHHHHHH
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLE----ECYENLKK 312 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdle----ea~~~l~~ 312 (399)
+..+ .....+++++|+++ .+...+++
T Consensus 180 ~l~~------~~~iil~vvt~~~d~a~~~~l~la~~ 209 (608)
T 3szr_A 180 YIQR------QETISLVVVPSNVDIATTEALSMAQE 209 (608)
T ss_dssp HTTS------SSCCEEEEEESSSCTTTCHHHHHHHH
T ss_pred HHhc------CCCCceEEEeccchhccHHHHHHHHH
Confidence 4321 22345668888766 34444544
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.85 E-value=1.5e-09 Score=98.26 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=67.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh-ccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH-GNL 209 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~-~~~ 209 (399)
.+|++++|+||||||||||+++|++++.+ .++|++|+...+.. ..-++.++..+. +..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------------~i~~v~~d~~~~~~--~~~~~~~~~~~~~~~~ 62 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE-------------------RVALLPMDHYYKDL--GHLPLEERLRVNYDHP 62 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------------GEEEEEGGGCBCCC--TTSCHHHHHHSCTTSG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------------CeEEEecCccccCc--ccccHHHhcCCCCCCh
Confidence 36889999999999999999999998753 14555554322210 000222222111 000
Q ss_pred cCCcHHHHHHHHH---cCCceE---EecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh-------CCCCcHHHHHH
Q 015825 210 YGTSVEAVEAVAD---AGKRCI---LDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA-------RGTETEDQILK 276 (399)
Q Consensus 210 ~g~~~~~i~~~~~---~g~~~v---ldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~-------lD~~~~e~i~~ 276 (399)
.....+.+.+.++ .+.... .+... +.+....++.....+++.+|.++++|||+++ +|...+..+++
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~-g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r 141 (211)
T 3asz_A 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRA-YTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR 141 (211)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEECCEETTT-TEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCcccCcc-cCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence 0011222222221 111110 11100 0000001122334478888889999999999 88888887877
Q ss_pred HHHHH
Q 015825 277 RLRNA 281 (399)
Q Consensus 277 ~L~~~ 281 (399)
++.+.
T Consensus 142 ~l~r~ 146 (211)
T 3asz_A 142 RLKRD 146 (211)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 100
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.85 E-value=2.2e-08 Score=90.13 Aligned_cols=158 Identities=19% Similarity=0.164 Sum_probs=84.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc---cccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA---MEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~---~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
.+|++++|+|||||||||++++|++.+ | .+...+..... ......+++||+...++.+ +..++..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~----g-~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~--- 94 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET----G-LEFAEADAFHSPENIATMQRGIPLTDEDRWPWL----RSLAEWM--- 94 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH----C-CEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHH----HHHHHHH---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh----C-CeEEcccccccHHHHHHHhcCCCCCCcccccHH----HHHHHHH---
Confidence 478999999999999999999999876 4 22221111110 0111246777775554443 2333221
Q ss_pred cccCCcHHHHHHHHHcCCceEEecch---hhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC--cHHHHHHHHHHHH
Q 015825 208 NLYGTSVEAVEAVADAGKRCILDIDV---QGARSVRASPLDAIFIFICPPSMEELEERLRARGTE--TEDQILKRLRNAK 282 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~g~~~vldld~---~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~--~~e~i~~~L~~~~ 282 (399)
...+..+..++++... .....++........+++. ++.+++-+|+..|+.. ..+.+.+.+.
T Consensus 95 ----------~~~~~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~-~~~e~l~~Rl~~R~~~~~~~~~l~~~~~--- 160 (200)
T 4eun_A 95 ----------DARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLD-GPAEVIKGRMSKREGHFMPASLLQSQLA--- 160 (200)
T ss_dssp ----------HHHHHTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEE-CCHHHHHHHHTTCSCCSSCGGGHHHHHH---
T ss_pred ----------HHHHhcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEe-CCHHHHHHHHHhcccCCCCHHHHHHHHH---
Confidence 1122345556666422 1222222222223344444 4589999999888532 2222222221
Q ss_pred HHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhcc
Q 015825 283 EEIKQGKSSGIFDHILYND-KLEECYENLKKHLGL 316 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~~ 316 (399)
+.... +....+++|.+. +++++.+.+.+++..
T Consensus 161 -~~~~~-~~~~~~~~Id~~~~~~e~~~~I~~~l~~ 193 (200)
T 4eun_A 161 -TLEAL-EPDESGIVLDLRQPPEQLIERALTWLDI 193 (200)
T ss_dssp -HCCCC-CTTSCEEEEETTSCHHHHHHHHHHHHCC
T ss_pred -HhCCC-CCCCCeEEEECCCCHHHHHHHHHHHHHh
Confidence 11111 122356666554 899999888876654
No 101
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.81 E-value=2.9e-11 Score=121.01 Aligned_cols=71 Identities=6% Similarity=0.010 Sum_probs=55.1
Q ss_pred CcceeEEEEcCC--ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc----
Q 015825 243 PLDAIFIFICPP--SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL---- 316 (399)
Q Consensus 243 ~~~~~~ili~~P--~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~---- 316 (399)
++..+.+++.+| ++++||||++++|+.+.+.+.+.|+++.+ ..++++++|+++. +..+++++.+
T Consensus 303 rl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~---------~~~vi~itH~~~~-~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 303 RVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD---------TRQVLVVTHLAQI-AARAHHHYKVEKQV 372 (415)
T ss_dssp HHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTT---------TSEEEEECSCHHH-HTTCSEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhC---------CCEEEEEeCcHHH-HhhcCeEEEEEEec
Confidence 333444677888 99999999999999999999888887531 3488999999855 4678888888
Q ss_pred cCCeeee
Q 015825 317 DGSIATN 323 (399)
Q Consensus 317 ~~~~~~~ 323 (399)
.+|.++.
T Consensus 373 ~~G~~~~ 379 (415)
T 4aby_A 373 EDGRTVS 379 (415)
T ss_dssp ETTEEEE
T ss_pred cCCceEE
Confidence 6666554
No 102
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.81 E-value=3.4e-10 Score=109.68 Aligned_cols=148 Identities=15% Similarity=0.112 Sum_probs=87.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
..+|++++|+||||||||||+++|++++++..|. ..++|++|+..+++. +..++..+.. .
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~--------------~~v~~v~qd~~~~~~-----t~~e~~~~~~-~ 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH--------------PRVDLVTTDGFLYPN-----AELQRRNLMH-R 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC--------------CCEEEEEGGGGBCCH-----HHHHHTTCTT-C
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC--------------CeEEEEecCccCCcc-----cHHHHHHHHH-h
Confidence 4589999999999999999999999998765441 237899998655443 3444443321 1
Q ss_pred cCCc----HHHHHHHH---HcCCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHH
Q 015825 210 YGTS----VEAVEAVA---DAGKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (399)
Q Consensus 210 ~g~~----~~~i~~~~---~~g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~ 281 (399)
++.+ .+.+.+.+ ..+.. ... ..+....+++.....+++.+|+++++|||+...|+...
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~~~~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~---------- 212 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVKSGSDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTL---------- 212 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHHTTCSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSC----------
T ss_pred cCCChHHHHHHHHHHHHHhCCCcccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchH----------
Confidence 2222 12222222 22221 111 01111223444556688999999999999998875210
Q ss_pred HHHHHhccCCCcceE-EEeCCCHHHHHHH-HHHhhcccC
Q 015825 282 KEEIKQGKSSGIFDH-ILYNDKLEECYEN-LKKHLGLDG 318 (399)
Q Consensus 282 ~~~l~~~~~~~~~t~-Viv~hdleea~~~-l~~ii~~~~ 318 (399)
.+ ...++. |++.++.+.+... ++|.+.+.+
T Consensus 213 --~l-----~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 213 --MV-----SDLFDFSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp --CG-----GGGCSEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred --HH-----HHhcCcEEEEECCHHHHHHHHHHHHHHHHh
Confidence 01 112343 4677787776654 455554443
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.81 E-value=1.1e-10 Score=104.09 Aligned_cols=136 Identities=13% Similarity=0.121 Sum_probs=72.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCCc-ccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPSM-FGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTS 213 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~~-~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~ 213 (399)
.++|+||||||||||+++|+|++... .|...... +. ......++|++|+... .++. + ...+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~-~~--~~~~~~ig~~~~~~~~----------~~~~-~-~~~~~~~ 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEV-RD--PETKKRTGFRIITTEG----------KKKI-F-SSKFFTS 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEE-C--------CCEEEEEETTC----------CEEE-E-EETTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhh-cc--ccccceeEEEeecCcH----------HHHH-H-HhhcCCc
Confidence 58999999999999999999987532 22111110 00 0112347899887511 0111 0 1111000
Q ss_pred HHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEE-----EEcCCChHHHHH--HHHhCCCCcHHHHHHHHHHHHHHHH
Q 015825 214 VEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFI-----FICPPSMEELEE--RLRARGTETEDQILKRLRNAKEEIK 286 (399)
Q Consensus 214 ~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~i-----li~~P~lllLDE--pl~~lD~~~~e~i~~~L~~~~~~l~ 286 (399)
. ..++-.+..+....+++...+.+ ++.+|++++||| |++++|+...+.+.+.+..
T Consensus 67 ---------~---~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~------ 128 (178)
T 1ye8_A 67 ---------K---KLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD------ 128 (178)
T ss_dssp ---------S---SEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC------
T ss_pred ---------c---ccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc------
Confidence 0 00110011122223333444444 778999999999 9999998766666655543
Q ss_pred hccCCCcceEEEeCC---CHHHHHH
Q 015825 287 QGKSSGIFDHILYND---KLEECYE 308 (399)
Q Consensus 287 ~~~~~~~~t~Viv~h---dleea~~ 308 (399)
...++++++| +.+.+..
T Consensus 129 -----~~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 129 -----PNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp -----TTSEEEEECCSSCCSHHHHH
T ss_pred -----CCCeEEEEEccCCCchHHHH
Confidence 1235777775 6555443
No 104
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.74 E-value=2.9e-08 Score=88.09 Aligned_cols=168 Identities=17% Similarity=0.001 Sum_probs=81.1
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~ 212 (399)
|++++|+|||||||||++++|++.. .| .+.......... ...+++++....+... ++.+++.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~---~g-~~~i~~d~~~~~--~~~~~~~~~~~~~~~~----~~~~~l~~~~----- 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL---DN-SAYIEGDIINHM--VVGGYRPPWESDELLA----LTWKNITDLT----- 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS---SS-EEEEEHHHHHTT--CCTTCCCGGGCHHHHH----HHHHHHHHHH-----
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc---CC-eEEEcccchhhh--hccccccCccchhHHH----HHHHHHHHHH-----
Confidence 5789999999999999999998733 33 232221111110 1134555543222222 3333332221
Q ss_pred cHHHHHHHHHcCCceEEec--chhhHHHHHc-----CCcceeEEEEcCCChHHHHHHHHhCCCCc---HHHHHHHHHHHH
Q 015825 213 SVEAVEAVADAGKRCILDI--DVQGARSVRA-----SPLDAIFIFICPPSMEELEERLRARGTET---EDQILKRLRNAK 282 (399)
Q Consensus 213 ~~~~i~~~~~~g~~~vldl--d~~g~~~l~~-----~~~~~~~ili~~P~lllLDEpl~~lD~~~---~e~i~~~L~~~~ 282 (399)
......+..++++. .+...+.++. .....+.++...++.+.+.+|...|..+. .+.+.. ...
T Consensus 67 -----~~~~~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~-~~~-- 138 (189)
T 2bdt_A 67 -----VNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLEL-VEE-- 138 (189)
T ss_dssp -----HHHHHTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHH-HHH--
T ss_pred -----HHHHhcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-HHH--
Confidence 11122344455553 2222222111 21223333334466888888877553221 111111 111
Q ss_pred HHHHhccCCCcceEEEeCCC-HHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 283 EEIKQGKSSGIFDHILYNDK-LEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hd-leea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
+.... ....++++.+|. ++++-+.+++++ .+|++...+++.
T Consensus 139 --~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~ 180 (189)
T 2bdt_A 139 --FESKG-IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGD 180 (189)
T ss_dssp --HHHTT-CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC----
T ss_pred --HhhcC-CCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCC
Confidence 11111 112356677787 888888888887 777777777654
No 105
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.69 E-value=8.4e-11 Score=111.70 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=39.4
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-ccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-PRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
.++|+||||||||||+|+|+|...+..| .+...... ........++|+||+..+++.+ ++.++..|....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G-~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~l----tv~d~~~~g~~~ 74 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKA-SSWNREEKIPKTVEIKAIGHVIEEGGVKMKL----TVIDTPGFGDQI 74 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEE----EEECCCC--CCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC-ccccCCcccCcceeeeeeEEEeecCCCcCCc----eEEechhhhhhc
Confidence 5799999999999999999999988877 44322111 1112234589999987766555 777776665443
No 106
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.66 E-value=9.7e-10 Score=103.82 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=31.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCc-ccceee
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSM-FGFSVS 166 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~-~g~~i~ 166 (399)
..+|++++|+||||||||||+++|++++++. .| .+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G-~I~ 58 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSY-HII 58 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCC-EEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCC-EEE
Confidence 3589999999999999999999999998876 67 443
No 107
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.64 E-value=1.8e-09 Score=105.36 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=32.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH 167 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ 167 (399)
.+|+.++|+||||||||||+++|++++++..| .+..
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g-~i~i 204 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEER-IISI 204 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSC-EEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc-EEEE
Confidence 47899999999999999999999999998877 5543
No 108
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.64 E-value=6.9e-10 Score=109.84 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=51.3
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
.+|++++||||++++|+.+.+.+.+.+.++.. ...++++++|+++. ...+++++.+.+|.++
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~--------~g~tvi~itH~~~~-~~~~d~~~~l~~G~i~ 363 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELER--------LNKVIVFITHDREF-SEAFDRKLRITGGVVV 363 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG--------SSSEEEEEESCHHH-HTTCSCEEEEETTEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--------CCCEEEEEecchHH-HHhCCEEEEEECCEEE
Confidence 68999999999999999998888888877532 23489999999987 5678888888888664
No 109
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.63 E-value=4.7e-07 Score=79.12 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=79.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc--cccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA--MEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~--~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
.+|++++|+|||||||||+++.|++.+ |............ ......++.+++...++.+ +..+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~------ 71 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL----QALND------ 71 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHH----HHHHH------
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccchHHHHHhhcCcCCCccccccHH----HHHHH------
Confidence 468999999999999999999999864 3222221111000 0000123444432222211 11111
Q ss_pred ccCCcHHHHHHHHHcCCceEEecc---hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC--cHHHHHHHHHHHHH
Q 015825 209 LYGTSVEAVEAVADAGKRCILDID---VQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE--TEDQILKRLRNAKE 283 (399)
Q Consensus 209 ~~g~~~~~i~~~~~~g~~~vldld---~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~--~~e~i~~~L~~~~~ 283 (399)
.+...+..+..++++.. ......++........+++.. +.+++.+|+..|+.. .+..+...+.
T Consensus 72 -------~~~~~~~~~~~~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~-~~e~~~~R~~~R~~~~~~~~~~~~~~~---- 139 (175)
T 1knq_A 72 -------AAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKG-DFDVIESRLKARKGHFFKTQMLVTQFE---- 139 (175)
T ss_dssp -------HHHHHHHHCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEEC-CHHHHHHHHHTSTTCCCCHHHHHHHHH----
T ss_pred -------HHHHHHhcCCcEEEEeCchHHHHHHHHHhcCCCEEEEEEEC-CHHHHHHHHHhccCCCCchHHHHHHHH----
Confidence 12222334556666642 222233443333334555554 478999999988633 2333322221
Q ss_pred HHHhccCCCcceEEEeCC-CHHHHHHHHHHhh
Q 015825 284 EIKQGKSSGIFDHILYND-KLEECYENLKKHL 314 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii 314 (399)
.+....+....+++|.++ +++++.+.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l 171 (175)
T 1knq_A 140 TLQEPGADETDVLVVDIDQPLEGVVASTIEVI 171 (175)
T ss_dssp HCCCCCTTCTTEEEEECSSCHHHHHHHHHHHH
T ss_pred hhhCcccCCCCeEEEeCCCCHHHHHHHHHHHH
Confidence 111110123356777655 8888888877655
No 110
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.60 E-value=1.4e-08 Score=88.64 Aligned_cols=68 Identities=16% Similarity=0.088 Sum_probs=47.1
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-cccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-RAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
...+|++++|+||||||||||+++|+|.+ +..| .+...+... ...... .|+||+..+| .+ ++.+++.+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G-~V~~~g~~i~~~~~~~--~~~~q~~~l~-~l----tv~e~l~~ 97 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG-NVKSPTYTLVEEYNIA--GKMIYHFDLY-RL----ADPEELEF 97 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCS-CCCCCTTTCEEEEEET--TEEEEEEECT-TC----SCTTHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCC-eEEECCEeeeeeccCC--Ccceeccccc-cC----CcHHHHHH
Confidence 34689999999999999999999999999 7778 454333222 111112 2788887777 54 55555543
No 111
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.58 E-value=9.8e-10 Score=98.83 Aligned_cols=51 Identities=27% Similarity=0.380 Sum_probs=36.0
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecC---CCccccccCCeeEEecCh
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT---RAPRAMEKDGVHYHFTER 187 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~tt---r~~~~~~~~~i~yvfq~~ 187 (399)
|++++|+||||||||||+++|++.++ ..| +...+ .... .....++|++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G--i~~~g~~~~~~~-~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG--VPVDGFYTEEVR-QGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT--CCCEEEECCEEE-TTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC--EEEcCEecchhH-hhhceEEEEEEec
Confidence 67899999999999999999999987 666 32211 1111 1133478998874
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.57 E-value=2.5e-09 Score=105.45 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=28.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
.+|.+++|+||||||||||+++|++.+++..+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~ 152 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKY 152 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCC
Confidence 36779999999999999999999999887533
No 113
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.56 E-value=1.4e-08 Score=92.50 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.+|++++|+||||||||||+++|++...+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 48999999999999999999999996544
No 114
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.53 E-value=2.4e-08 Score=98.09 Aligned_cols=174 Identities=17% Similarity=0.108 Sum_probs=95.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-----------cccCCeeEEecChH-HHHHHHhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-----------MEKDGVHYHFTERS-VMEKAIKDGK 198 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-----------~~~~~i~yvfq~~~-lf~~~~~~~~ 198 (399)
.+|++++|+||||||||||+++|+++..+..| .+.......+. ...+.+.++++... ...+. .
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g-~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~----~ 143 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASADII-VLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERM----K 143 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCSEE-EEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHH----H
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCEE-EEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHH----H
Confidence 48999999999999999999999999988776 43322111000 01122455555421 11111 1
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHcCCceEEecc-hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADAGKRCILDID-VQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld-~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
..........++ ...+..+++-++ +..+.... ++...+ +.+|+. +.++|+.....+.+.
T Consensus 144 ~~~~~~~~ae~~----------~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~l 203 (347)
T 2obl_A 144 AAFTATTIAEYF----------RDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKL 203 (347)
T ss_dssp HHHHHHHHHHHH----------HTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------HhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHH
Confidence 111110000000 012333322222 21111111 112211 456655 778998777777776
Q ss_pred HHHHHHHHHhccCCCcc-----eEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcch
Q 015825 278 LRNAKEEIKQGKSSGIF-----DHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADH 337 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~-----t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~ 337 (399)
++++.. . .+.. ++++.+||++ ...+++++.+.+|.++..+++.+....|...
T Consensus 204 ler~~~----~--~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~~~~Paid 260 (347)
T 2obl_A 204 LERAGP----A--PKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELAEENHFPAID 260 (347)
T ss_dssp HTTCEE----C--SSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTTTCSSCBC
T ss_pred HHHHhC----C--CCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHcCCCCCcC
Confidence 665421 0 1122 6778999988 3468999999999999887777666666543
No 115
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.52 E-value=8.1e-10 Score=105.60 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=29.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
..+|++++|+||||||||||++.|++...+..|
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 458999999999999999999999999876655
No 116
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.51 E-value=1.3e-08 Score=99.22 Aligned_cols=70 Identities=20% Similarity=0.064 Sum_probs=48.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec----CCCcc------ccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT----TRAPR------AMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t----tr~~~------~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
.+|++++|+|||||||||++++|++.+.+..| .+... .+... .....++.|++|....++.+ ++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g-~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~----~v~ 201 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF-SVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAA----VAY 201 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHH----HHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC-EEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHH----HHH
Confidence 47899999999999999999999999988777 44432 12110 02234567888887777665 555
Q ss_pred HHHHH
Q 015825 201 EFASV 205 (399)
Q Consensus 201 E~~~~ 205 (399)
+++.+
T Consensus 202 e~l~~ 206 (328)
T 3e70_C 202 DAIQH 206 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 117
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.50 E-value=3.8e-09 Score=109.31 Aligned_cols=150 Identities=15% Similarity=0.091 Sum_probs=88.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
.+|++++|+||||||||||++.+++...+. |..+ +.|.|++... ++...... +
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~v--------------i~~~~ee~~~--------~l~~~~~~----~ 331 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACAN-KERA--------------ILFAYEESRA--------QLLRNAYS----W 331 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCE--------------EEEESSSCHH--------HHHHHHHT----T
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCE--------------EEEEEeCCHH--------HHHHHHHH----c
Confidence 489999999999999999999999987652 4211 3345665321 11111111 2
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC-----cHHHHHHHHHHHHHHH
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE-----TEDQILKRLRNAKEEI 285 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~-----~~e~i~~~L~~~~~~l 285 (399)
+..... ....+...+.+..+..+..-..++.....++...|+++++| |++++|.. .++.+.+.++.+++
T Consensus 332 g~~~~~---~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-- 405 (525)
T 1tf7_A 332 GMDFEE---MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-- 405 (525)
T ss_dssp SCCHHH---HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH--
T ss_pred CCCHHH---HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh--
Confidence 222222 22334444444433222111222222333566789999999 99999988 66666666665542
Q ss_pred HhccCCCcceEEEeCCCH----------HHHHHHHHHhhcccCC
Q 015825 286 KQGKSSGIFDHILYNDKL----------EECYENLKKHLGLDGS 319 (399)
Q Consensus 286 ~~~~~~~~~t~Viv~hdl----------eea~~~l~~ii~~~~~ 319 (399)
...++++++|+. ..+...+++++.+..+
T Consensus 406 ------~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 406 ------EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYV 443 (525)
T ss_dssp ------TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEE
T ss_pred ------CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEE
Confidence 135888999987 4444556777766554
No 118
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.48 E-value=3.2e-06 Score=78.46 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++..++|+||+||||||+.+.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998755
No 119
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.48 E-value=2.6e-07 Score=88.24 Aligned_cols=152 Identities=17% Similarity=0.296 Sum_probs=81.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee-cCCCccccccCCeeEEecChHHHHHHHhhhhhHHHH-HHhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH-TTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA-SVHGN 208 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~-ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~-~~~~~ 208 (399)
..+..++|+|||||||||+.+.|...++. ....++. +.+..... |..+.. .+.++. .+.+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~-~~~~Is~D~~R~~~~~--------------~~~~~~--~~~~~a~~~~~~ 93 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQG-NVIVIDNDTFKQQHPN--------------FDELVK--LYEKDVVKHVTP 93 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTT-CCEEECTHHHHTTSTT--------------HHHHHH--HHGGGCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEechHhHHhchh--------------hHHHHH--HccchhhhhhhH
Confidence 35789999999999999999999876531 1112222 22211110 111111 122221 12223
Q ss_pred ccCC-cHHHHHHHHHcCCceEEecchhhHH---HH----HcCCcc-eeEEEEcCCChHHH--HHHHH---------hCCC
Q 015825 209 LYGT-SVEAVEAVADAGKRCILDIDVQGAR---SV----RASPLD-AIFIFICPPSMEEL--EERLR---------ARGT 268 (399)
Q Consensus 209 ~~g~-~~~~i~~~~~~g~~~vldld~~g~~---~l----~~~~~~-~~~ili~~P~lllL--DEpl~---------~lD~ 268 (399)
.++. ....+...+..+..+++|.+..+.. .+ +..... .+++|.++|++..+ .+|+. ++..
T Consensus 94 ~~~~~~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~ 173 (287)
T 1gvn_B 94 YSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARAT 173 (287)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCC
T ss_pred HHHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 3333 2344555667788899997665533 22 222222 34556666655443 77763 3433
Q ss_pred --CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCC
Q 015825 269 --ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDK 302 (399)
Q Consensus 269 --~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hd 302 (399)
+..+.+.+++.....++.. ...+|.++++++
T Consensus 174 ~~e~~~~i~~rl~~a~~el~~---~~~~d~v~v~d~ 206 (287)
T 1gvn_B 174 PKQAHDIVVKNLPTNLETLHK---TGLFSDIRLYNR 206 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH---HTCCSCEEEECT
T ss_pred CHHHHHHHHHHHHHHHHHHHc---CCCCCeEEEEeC
Confidence 3456667777766655543 246688877765
No 120
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.47 E-value=1.7e-06 Score=79.83 Aligned_cols=171 Identities=20% Similarity=0.247 Sum_probs=84.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhh----hHHHHHHh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGK----FLEFASVH 206 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~----~~E~~~~~ 206 (399)
.+|.+++|.||+||||||+++.|...+.. |..+.. ++.+...+ . ...+..++..+. ..+...+.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~-~~~p~~~~---~------g~~i~~~~~~~~~~~~~~~~ll~~ 91 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIM-TREPGGVP---T------GEEIRKIVLEGNDMDIRTEAMLFA 91 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEE-ECTTTTCH---H------HHHHHHHTTC---CCHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcee-ecCCCCCc---h------HHHHHHHHhCCCCCCHHHHHHHHH
Confidence 47899999999999999999999998876 434433 33222111 0 011111111111 00101111
Q ss_pred ccccCCcHHHHHHHHHcCCceEEe----------c-----chhhHHHH---HcCCcce-eEEEEcCCChHHHHHHHHhCC
Q 015825 207 GNLYGTSVEAVEAVADAGKRCILD----------I-----DVQGARSV---RASPLDA-IFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 207 ~~~~g~~~~~i~~~~~~g~~~vld----------l-----d~~g~~~l---~~~~~~~-~~ili~~P~lllLDEpl~~lD 267 (399)
...+....+.+...+..+..+++| . +......+ ....+.+ +++++.- +.+++-+|+..|+
T Consensus 92 a~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~-~~e~~~~R~~~R~ 170 (229)
T 4eaq_A 92 ASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNV-SAEVGRERIIKNS 170 (229)
T ss_dssp HHHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeC-CHHHHHHHHHhcC
Confidence 110000001123344567777877 2 22211122 1122222 2333333 3588889998773
Q ss_pred ----CC--cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 268 ----TE--TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 268 ----~~--~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
.. ....++++++....++...+ ...+.+|-.+.+++++.+.+.+++.
T Consensus 171 ~~~dr~e~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~~s~eev~~~I~~~l~ 223 (229)
T 4eaq_A 171 RDQNRLDQEDLKFHEKVIEGYQEIIHNE-SQRFKSVNADQPLENVVEDTYQTII 223 (229)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHTTTC-TTTEEEEETTSCHHHHHHHHHHHHH
T ss_pred CCccchhhhhHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 21 24566777776655543321 2223334445589999888877553
No 121
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.47 E-value=1.1e-06 Score=81.60 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=25.4
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++...+|.+++|+||||||||||+++|++.+
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445689999999999999999999999976
No 122
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.43 E-value=5.8e-06 Score=75.68 Aligned_cols=161 Identities=19% Similarity=0.315 Sum_probs=87.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhh-----hHHHHHH
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGK-----FLEFASV 205 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~-----~~E~~~~ 205 (399)
.+.+++.|+||+||||+|+.+.|+..+. +.|.. ..+++...+..++ +.++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g------~~hIs----------------tGdllR~~i~~~t~lg~~~~~~~~- 83 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH------FNHLS----------------SGDLLRAEVQSGSPKGKELKAMME- 83 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC------CEEEC----------------HHHHHHHHHTTCCHHHHHHHHHHH-
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC------CceEc----------------HHHHHHHHHHcCCchHHHHHHHHh-
Confidence 4678999999999999999999998652 22211 0111111111110 111111
Q ss_pred hccccCCcHHH----HHHHH----HcCCceEEecchhhHHH---HHcCCcceeEEEEcCCChHHHHHHHHhCC------C
Q 015825 206 HGNLYGTSVEA----VEAVA----DAGKRCILDIDVQGARS---VRASPLDAIFIFICPPSMEELEERLRARG------T 268 (399)
Q Consensus 206 ~~~~~g~~~~~----i~~~~----~~g~~~vldld~~g~~~---l~~~~~~~~~ili~~P~lllLDEpl~~lD------~ 268 (399)
.+.+ .+.+. +.+.+ .....+++|..|....+ +.......-.++..+.+.+++-+|+.+|. .
T Consensus 84 ~G~l--Vpde~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~D 161 (217)
T 3umf_A 84 RGEL--VPLEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVD 161 (217)
T ss_dssp HTCC--CCHHHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CH
T ss_pred cCCC--CCHHHHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCC
Confidence 1111 12221 11211 12345788875544333 32222222233333344788889987663 4
Q ss_pred CcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 269 ETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
++++.+++|+..++++ +++|+..+.+..|-.+.+++++++.+..++..
T Consensus 162 D~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 162 DNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 5778899999998876 34444334444445566999999999887654
No 123
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.43 E-value=7.1e-06 Score=74.43 Aligned_cols=155 Identities=27% Similarity=0.372 Sum_probs=86.1
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhh-----HHHHHHhccc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKF-----LEFASVHGNL 209 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~-----~E~~~~~~~~ 209 (399)
+++|+||+||||+|+.+.|+..+ | +.|. +..+++...+..++- .++.. .+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~----g--~~~i----------------stGdllR~~i~~~t~lg~~~~~~~~-~G~l 58 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK----G--FVHI----------------STGDILREAVQKGTPLGKKAKEYME-RGEL 58 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----C--CEEE----------------EHHHHHHHHHHHTCHHHHHHHHHHH-HTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----C--CeEE----------------cHHHHHHHHHHhcChhhhhHHHHHh-cCCc
Confidence 57899999999999999999865 2 2221 111222221111111 01111 1111
Q ss_pred cCCcHHHHHH----HHHcCCceEEecchhhHHHH-------HcCCcce-eEEEEcCCChHHHHHHHHhC-----------
Q 015825 210 YGTSVEAVEA----VADAGKRCILDIDVQGARSV-------RASPLDA-IFIFICPPSMEELEERLRAR----------- 266 (399)
Q Consensus 210 ~g~~~~~i~~----~~~~g~~~vldld~~g~~~l-------~~~~~~~-~~ili~~P~lllLDEpl~~l----------- 266 (399)
.+.+.+.. .+.....+++|..|....+. ....... .++++. .+.+++-+|+.+|
T Consensus 59 --vpd~iv~~lv~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~-v~~e~l~~Rl~~R~~~~~~g~~y~ 135 (206)
T 3sr0_A 59 --VPDDLIIALIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFE-VPDEVVIERLSGRRINPETGEVYH 135 (206)
T ss_dssp --CCHHHHHHHHHHHCCSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEE-CCHHHHHHHHHTEEECTTTCCEEE
T ss_pred --CCHHHHHHHHHHhhccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecC-CCHHHHHHHHhCCccccCCCceee
Confidence 23332222 22333457788655433322 1222222 233333 3467888899875
Q ss_pred ---------------CCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 267 ---------------GTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 267 ---------------D~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
..++++.+++|+..++++ +++|+..+.+..|-.+.+++++++.+..++.
T Consensus 136 ~~~~pp~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~ 203 (206)
T 3sr0_A 136 VKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203 (206)
T ss_dssp TTTBCCCTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC
T ss_pred eeccCCCCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence 356889999999999876 3444434444445556699999999888764
No 124
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=1.5e-06 Score=77.83 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+++.++|+||+||||||+.+.|++.+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999999865
No 125
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.41 E-value=9.6e-07 Score=79.11 Aligned_cols=155 Identities=13% Similarity=0.094 Sum_probs=76.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
..+++|+|++||||||+++.|++.+.. .......-.. .......++.|+.......+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~----~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~----------------- 76 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY----PFIEGDALHPPENIRKMSEGIPLTDDDRWPWL----------------- 76 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC----CEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHH-----------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC----EEEeCCcCcchhhHHHHhcCCCCCchhhHHHH-----------------
Confidence 568999999999999999999886521 2211110000 00000012222221111110
Q ss_pred CCcHHHHHHHHHcCCceEEecc---hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC--CcHHHHHHHHHHHHHHH
Q 015825 211 GTSVEAVEAVADAGKRCILDID---VQGARSVRASPLDAIFIFICPPSMEELEERLRARGT--ETEDQILKRLRNAKEEI 285 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld---~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~--~~~e~i~~~L~~~~~~l 285 (399)
..+...+..+..+++|.. ......+......+..++..+++.+++-+|+..|+. ...+.+.+.+.. .
T Consensus 77 ----~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~----~ 148 (202)
T 3t61_A 77 ----AAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLET----L 148 (202)
T ss_dssp ----HHHHHHHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHH----C
T ss_pred ----HHHHHHHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHh----c
Confidence 112222244566677742 333344444333323344444558899999987753 232333222222 1
Q ss_pred HhccCCCcceEEEeC-CCHHHHHHHHHHhhccc
Q 015825 286 KQGKSSGIFDHILYN-DKLEECYENLKKHLGLD 317 (399)
Q Consensus 286 ~~~~~~~~~t~Viv~-hdleea~~~l~~ii~~~ 317 (399)
... .....+++|.+ .+++++.+.+.+++...
T Consensus 149 ~~~-~~~~~~~~Id~~~~~~e~~~~I~~~l~~~ 180 (202)
T 3t61_A 149 EDP-RGEVRTVAVDVAQPLAEIVREALAGLARL 180 (202)
T ss_dssp CCC-TTSTTEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred CCC-CCCCCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 111 11223555544 48999988887766543
No 126
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.38 E-value=5.6e-09 Score=114.45 Aligned_cols=69 Identities=10% Similarity=-0.135 Sum_probs=48.5
Q ss_pred EcCCChHHHHHHHHhCCCCcHHHH-HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCC
Q 015825 251 ICPPSMEELEERLRARGTETEDQI-LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTS 327 (399)
Q Consensus 251 i~~P~lllLDEpl~~lD~~~~e~i-~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~ 327 (399)
+.+|++.+||||++++|+.....+ +..++.+.++ ..++++++||+.+.+ ..++++..+.++.+...+++
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~-------~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~~~~~ 808 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATK-------IGAFCMFATHFHELT-ALANQIPTVNNLHVTALTTE 808 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHT-------TCCEEEEEESCGGGG-GGGGTCTTEEEEEEEEEEET
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-------CCCEEEEEcCcHHHH-HHhcccceeEeeEEEEEecC
Confidence 468899999999999998777676 4444544321 245889999996544 56777777777766654433
No 127
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.38 E-value=1.2e-05 Score=69.03 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=51.5
Q ss_pred HcCCceEEec--chhhHHHHHcCCcce-eEEEEcCCChHHHHHHHHhCCC----CcHHHHHHHHHHHHH-HHHhccCCCc
Q 015825 222 DAGKRCILDI--DVQGARSVRASPLDA-IFIFICPPSMEELEERLRARGT----ETEDQILKRLRNAKE-EIKQGKSSGI 293 (399)
Q Consensus 222 ~~g~~~vldl--d~~g~~~l~~~~~~~-~~ili~~P~lllLDEpl~~lD~----~~~e~i~~~L~~~~~-~l~~~~~~~~ 293 (399)
..+..+++|. .+.....++.....+ ..+++. .+.+++.+|+..|+. .+.+.+.+++..... ....+ ...
T Consensus 76 ~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~-~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~--~~~ 152 (179)
T 3lw7_A 76 SNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVH-SPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEV--IAM 152 (179)
T ss_dssp CCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEE-CCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHH--HHT
T ss_pred cCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEE-CCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhH--HHh
Confidence 3455667764 222233333222223 344444 457999999998875 567777777643211 11111 124
Q ss_pred ceEEEeCC-CHHHHHHHHHHhhc
Q 015825 294 FDHILYND-KLEECYENLKKHLG 315 (399)
Q Consensus 294 ~t~Viv~h-dleea~~~l~~ii~ 315 (399)
+++++.|+ +++++.+.+.+++.
T Consensus 153 ad~vId~~~~~~~~~~~i~~~l~ 175 (179)
T 3lw7_A 153 ADYIITNDSNYEEFKRRCEEVTD 175 (179)
T ss_dssp CSEEEECCSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCHHHHHHHHHHHHH
Confidence 57887776 89999888877654
No 128
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.35 E-value=6.9e-09 Score=100.04 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=28.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
....+|++++|+||||||||||+++|+|++ .|
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G 152 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GG 152 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TC
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc---Cc
Confidence 345699999999999999999999999998 56
No 129
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.35 E-value=1.9e-08 Score=108.86 Aligned_cols=63 Identities=13% Similarity=-0.036 Sum_probs=43.1
Q ss_pred EcCCChHHHHHHHHhCCCCcHHHH-HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCee
Q 015825 251 ICPPSMEELEERLRARGTETEDQI-LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIA 321 (399)
Q Consensus 251 i~~P~lllLDEpl~~lD~~~~e~i-~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~ 321 (399)
+.+|++.+||||+++.|+.....+ +..++.+.++ ..++++++||+.+.+ ..++++.....+.+
T Consensus 684 a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~-------~g~~vl~~TH~~el~-~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 684 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK-------IKALTLFATHYFELT-QLPEKMEGVANVHL 747 (800)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT-------TCCEEEEECSCGGGG-GHHHHSTTEEEEEE
T ss_pred ccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhc-------cCCeEEEEeCCHHHH-HHhhhhhceEEEEE
Confidence 678999999999999998877665 4555554321 245889999998654 36666544444433
No 130
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.32 E-value=2.2e-05 Score=70.75 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCCcHHHHHHHHHHHHHHHH----hccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 267 GTETEDQILKRLRNAKEEIK----QGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~----~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
+.++++.+++++..+..+.. .+...+.+..|-.+.+++++...+..++.
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 213 (216)
T 3dl0_A 161 ADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLG 213 (216)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 56788999999988776532 22111122233445699999998887664
No 131
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.31 E-value=1.1e-08 Score=105.85 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=39.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhh--hhhccCCcccceeeecCCCccc---cccCCeeEEecChH
Q 015825 131 NVEKPVVITGPSGVGKGTLISM--LMKEFPSMFGFSVSHTTRAPRA---MEKDGVHYHFTERS 188 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~--L~~~~~~~~g~~i~~ttr~~~~---~~~~~i~yvfq~~~ 188 (399)
.+|++++|+||||||||||+++ +.|..++..| .+..+...... .....++|+||++.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g-~i~v~g~~~~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP-GVFVTFEETPQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCC-EEEEESSSCHHHHHHHHGGGTCCHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC-EEEEEEeCCHHHHHHHHHHcCCChHHhh
Confidence 5899999999999999999999 6798876666 55544333211 11234677777643
No 132
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.30 E-value=2.4e-08 Score=90.73 Aligned_cols=32 Identities=16% Similarity=0.062 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
.+|++++|+||||||||||++.|++...+..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~ 52 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGD 52 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC
Confidence 47999999999999999999999987654333
No 133
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.29 E-value=1.7e-06 Score=81.46 Aligned_cols=77 Identities=21% Similarity=0.221 Sum_probs=48.6
Q ss_pred CCceEEEEeCCCh---HHHHH---HHHHhCCeEEEeccC-cc-------CCCC--cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 95 SSDDCLWFLEVDT---PYVRE---QKKVVGAEVVAWSKG-VI-------GNVE--KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 95 ~~~~~i~~~k~D~---~~~~~---l~~~~g~~v~~~s~~-~~-------~~~g--~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+.+.+|++||+|. +..+. ..+..|+++ .+|+. .. .+.. ..++++|.+|+|||||+|.|.+...
T Consensus 46 ~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhcccc
Confidence 7789999999993 22222 224568888 87765 22 1344 3899999999999999999998766
Q ss_pred CcccceeeecCCCcc
Q 015825 159 SMFGFSVSHTTRAPR 173 (399)
Q Consensus 159 ~~~g~~i~~ttr~~~ 173 (399)
...+ ..+++|+...
T Consensus 125 ~~~~-~~~g~T~~~~ 138 (262)
T 3cnl_A 125 SSVG-AQPGITKGIQ 138 (262)
T ss_dssp -----------CCSC
T ss_pred cccC-CCCCCccceE
Confidence 5555 5556665543
No 134
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.28 E-value=2.9e-09 Score=103.34 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=42.4
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHh--hcccCC
Q 015825 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKH--LGLDGS 319 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~i--i~~~~~ 319 (399)
.+|++++||||++++|+...+.+.+.++++. ...++++++|+. ++...++++ +.+.+|
T Consensus 240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~---------~~~~vi~~tH~~-~~~~~~d~~~~v~~~~g 299 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENS---------KHTQFIVITHNK-IVMEAADLLHGVTMVNG 299 (322)
T ss_dssp SCCSEEEEESCCSSCCHHHHHHHHHHHHHHT---------TTSEEEEECCCT-TGGGGCSEEEEEEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---------CCCeEEEEECCH-HHHhhCceEEEEEEeCC
Confidence 5788999999999999988888888877642 124788999985 455556653 444444
No 135
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.28 E-value=1.8e-06 Score=76.27 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.+|++++|+|||||||||++++|++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999999997
No 136
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.27 E-value=3e-05 Score=69.85 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=43.1
Q ss_pred EEEEcCCChHHHHHHHHhC---------------------------------CCCcHHHHHHHHHHHHHHHH----hccC
Q 015825 248 FIFICPPSMEELEERLRAR---------------------------------GTETEDQILKRLRNAKEEIK----QGKS 290 (399)
Q Consensus 248 ~ili~~P~lllLDEpl~~l---------------------------------D~~~~e~i~~~L~~~~~~l~----~~~~ 290 (399)
++++. .+.+++-+|+.+| +.++++.+++++..+..+.. .+..
T Consensus 110 vi~l~-~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~ 188 (216)
T 3fb4_A 110 VLNIK-VEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQ 188 (216)
T ss_dssp EEEEE-CCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEE-CCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 33433 3468899999988 45678899999988776532 1111
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
.+.+..|-.+.+++++.+.+..++.
T Consensus 189 ~~~~~~id~~~~~~~v~~~i~~~l~ 213 (216)
T 3fb4_A 189 KGVLKDIDGQQDIKKVFVDINDLLG 213 (216)
T ss_dssp TTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHH
Confidence 2222233345589999998887654
No 137
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.27 E-value=1.7e-08 Score=111.76 Aligned_cols=61 Identities=8% Similarity=-0.087 Sum_probs=44.7
Q ss_pred EEEcCCChHHHHHHHHhCCCCcH-HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 249 IFICPPSMEELEERLRARGTETE-DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD~~~~-e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.++.+|++.+||||++++|+... ..+++.++.+.++ ..++++++||+.+.+...++++..+
T Consensus 864 ~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~-------~g~~vl~~TH~~el~~~~~d~~~v~ 925 (1022)
T 2o8b_B 864 MHATAHSLVLVDELGRGTATFDGTAIANAVVKELAET-------IKCRTLFSTHYHSLVEDYSQNVAVR 925 (1022)
T ss_dssp HHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHT-------SCCEEEEECCCHHHHHHTSSCSSEE
T ss_pred HhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhc-------CCCEEEEEeCCHHHHHHhCCcceee
Confidence 55778999999999999997663 3356666665422 2458899999998887666665554
No 138
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.26 E-value=4e-08 Score=96.55 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=27.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc--CCcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF--PSMF 161 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~--~~~~ 161 (399)
.+|+++.|+||||||||||++.|++.. ++..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~ 161 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 161 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhc
Confidence 489999999999999999999999987 5444
No 139
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.25 E-value=2.8e-08 Score=106.90 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC-Cccc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP-SMFG 162 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~-~~~g 162 (399)
|++++|+|||||||||++++|++... +..|
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G 606 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVG 606 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTT
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccC
Confidence 89999999999999999999999763 4455
No 140
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.23 E-value=1.2e-05 Score=74.53 Aligned_cols=171 Identities=19% Similarity=0.239 Sum_probs=85.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhh----h---hhHHHH
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKD----G---KFLEFA 203 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~----~---~~~E~~ 203 (399)
.+|.+++|.|++||||||+++.|...+.. .|..+..+++.+.... + ...+...+.. . ...+.+
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~rep~~t~---~------g~~ir~~l~~~~~~~~~~~~~e~l 94 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTREPGGTL---L------AEKLRALVKEEHPGEELQDITELL 94 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSH---H------HHHHHHHHHSCCTTSCCCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeecCCCCCH---H------HHHHHHHHhhCCCcccCCHHHHHH
Confidence 47899999999999999999999887653 3434234454432111 1 1122222210 0 011222
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEec------chhhH---------HHHH---c--CCcceeEEEEcCCChHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILDI------DVQGA---------RSVR---A--SPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vldl------d~~g~---------~~l~---~--~~~~~~~ili~~P~lllLDEpl 263 (399)
.|....+......+...++.|..+++|- ..++. ..+. . ..++.+ +++. .+.+++-+|+
T Consensus 95 Lf~A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlv-i~Ld-v~~e~~~~Ri 172 (236)
T 3lv8_A 95 LVYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLT-LYLD-IDPKLGLERA 172 (236)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEE-EEEE-CCHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEE-EEEe-CCHHHHHHHH
Confidence 2332222222344556677888888882 11111 1111 1 123333 3333 3358888888
Q ss_pred HhCCC---Cc--HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 264 RARGT---ET--EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 264 ~~lD~---~~--~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
..|+. .. ..+++++++....++.... . .+-+|-.+.+++++.+.+.+++.
T Consensus 173 ~~R~~~dr~E~~~~~~~~rv~~~y~~la~~~-~-~~~vIDa~~sieeV~~~I~~~l~ 227 (236)
T 3lv8_A 173 RGRGELDRIEKMDISFFERARERYLELANSD-D-SVVMIDAAQSIEQVTADIRRALQ 227 (236)
T ss_dssp ----CCCTTTTSCHHHHHHHHHHHHHHHHHC-T-TEEEEETTSCHHHHHHHHHHHHH
T ss_pred HhcCCcchhhhhHHHHHHHHHHHHHHHHHHC-C-CEEEEeCCCCHHHHHHHHHHHHH
Confidence 77642 11 2466677766554443311 1 23333445689998888776553
No 141
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.22 E-value=1.1e-07 Score=93.63 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMF 161 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~ 161 (399)
++.++|+||||||||||+++|+|++++..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 89999999999999999999999998877
No 142
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.22 E-value=4.3e-08 Score=107.18 Aligned_cols=54 Identities=19% Similarity=0.058 Sum_probs=38.8
Q ss_pred EcCCChHHHHHHHHhCCCCcHHHHH-HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHH
Q 015825 251 ICPPSMEELEERLRARGTETEDQIL-KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312 (399)
Q Consensus 251 i~~P~lllLDEpl~~lD~~~~e~i~-~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ 312 (399)
+.+|++++||||++++|+.....+. ..++.+.++ ..++++++||+.+.+ ..+++
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~-------~g~tvl~vTH~~el~-~l~~~ 804 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRD-------VKSLTLFVTHYPPVC-ELEKN 804 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-------TCCEEEEECSCGGGG-GHHHH
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh-------cCCeEEEEeCcHHHH-HHHhh
Confidence 4679999999999999998777776 444544321 246899999997554 34554
No 143
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.19 E-value=1.3e-05 Score=70.83 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++.+++|+|++||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999998755
No 144
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.18 E-value=7.3e-07 Score=90.93 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=49.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec-CCCcc---------ccccCCeeEEecChHHHHHHHhhhhh
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT-TRAPR---------AMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t-tr~~~---------~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
..+|++++|+||||||||||+++|++++.+..| .+... ....+ ...+.+++|+||....++.+ ++
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G-~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~----tV 364 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGK-SVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS----VI 364 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH----HH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCC-eEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH----HH
Confidence 347999999999999999999999999887767 44432 11111 11234689999987655554 45
Q ss_pred HHHHHH
Q 015825 200 LEFASV 205 (399)
Q Consensus 200 ~E~~~~ 205 (399)
.+++.+
T Consensus 365 ~e~l~~ 370 (503)
T 2yhs_A 365 FDAIQA 370 (503)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 145
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.17 E-value=4.1e-06 Score=81.52 Aligned_cols=56 Identities=29% Similarity=0.347 Sum_probs=42.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCc--------ccceeeecCCCccccccCCeeEEecCh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSM--------FGFSVSHTTRAPRAMEKDGVHYHFTER 187 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~--------~g~~i~~ttr~~~~~~~~~i~yvfq~~ 187 (399)
++++++|+||+|||||||...|+..++.. .-..+.++|+++...+..++.|+|.+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi 102 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGE 102 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccc
Confidence 45789999999999999999999877521 001223578888888888998887653
No 146
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.16 E-value=2e-06 Score=84.73 Aligned_cols=57 Identities=26% Similarity=0.390 Sum_probs=40.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec-CCCcccc-ccCCeeEEe-cCh
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT-TRAPRAM-EKDGVHYHF-TER 187 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t-tr~~~~~-~~~~i~yvf-q~~ 187 (399)
..+|+.++|+||||||||||+++|++++++..| .+... ++..... ..+.++|++ |..
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g-~I~ie~~~e~~~~~~~~~v~~v~~q~~ 231 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQR-LITIEDVPELFLPDHPNHVHLFYPSEA 231 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSC-EEEEESSSCCCCTTCSSEEEEECC---
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCce-EEEECCccccCccccCCEEEEeecCcc
Confidence 348999999999999999999999999999877 55443 2222211 234578888 553
No 147
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.16 E-value=8.1e-06 Score=75.24 Aligned_cols=171 Identities=18% Similarity=0.173 Sum_probs=87.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCc---ccceeeecCCCccccccCCeeEEecChHHHHHHHhhhh---hHHHHH
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSM---FGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGK---FLEFAS 204 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~---~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~---~~E~~~ 204 (399)
.+|.+++|.||+||||||+++.|...+... +|..+. +++.+...+ .| ..+...+..+. ..+...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~-~~rep~~t~---~g------~~ir~~l~~~~~~~~~~~ll 92 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVV-VTREPGGTR---LG------ETLREILLNQPMDLETEALL 92 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEE-EEESSSSSH---HH------HHHHHHHHHSCCCHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeee-eecCCCCCh---HH------HHHHHHHHcCCCCHHHHHHH
Confidence 478999999999999999999999877543 154443 444432111 11 12222222211 222233
Q ss_pred HhccccCCcHHHHHHHHHcCCceEEecch------h---------hHHHHH-----cCCcceeEEEEcCCChHHHHHHHH
Q 015825 205 VHGNLYGTSVEAVEAVADAGKRCILDIDV------Q---------GARSVR-----ASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g~~~vldld~------~---------g~~~l~-----~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
|....+......++..++.|..+++|--. + -...+. ...++.+..|-.+| +++-+|+.
T Consensus 93 f~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~--e~~~~Ri~ 170 (227)
T 3v9p_A 93 MFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPP--QIASARRG 170 (227)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCS--SCGGGTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCH--HHHHHHHH
Confidence 33333332334456667788888888311 1 111111 12233333333444 66677887
Q ss_pred hCC---C-Cc-HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 265 ARG---T-ET-EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 265 ~lD---~-~~-~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
.|+ . +. ..+++++++....++.... ...+-+|-.+.+++++.+.+.+++
T Consensus 171 ~R~~~dr~E~~~~ef~~rv~~~Y~~la~~~-~~~~~vIDa~~s~eeV~~~I~~~l 224 (227)
T 3v9p_A 171 AVRMPDKFESESDAFFARTRAEYLRRAQEA-PHRFVIVDSSEPIAQIRKQLEGVL 224 (227)
T ss_dssp CCCCC---CCHHHHHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHH
T ss_pred hccCccchhhhhHHHHHHHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHHHHH
Confidence 663 1 11 2456666665554443211 223344445568999888877654
No 148
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.15 E-value=9.5e-06 Score=71.23 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++.++|+||+||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998765
No 149
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.15 E-value=8e-06 Score=74.95 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=25.6
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
...+|++++|.|+|||||||++++|.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999999997
No 150
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.14 E-value=1.4e-05 Score=71.20 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+|.+++|.|++||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 151
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.14 E-value=1.9e-06 Score=76.31 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=33.9
Q ss_pred CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEE-eCCCHHHHHHHHHHhhc
Q 015825 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHIL-YNDKLEECYENLKKHLG 315 (399)
Q Consensus 254 P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Vi-v~hdleea~~~l~~ii~ 315 (399)
.+.+++-+|+..||.....++.+++.....++.... ... .+++ .+.+++++.+.+.+++.
T Consensus 130 ~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~Id~~~~~e~~~~~i~~~l~ 190 (197)
T 2z0h_A 130 VDVETALKRKGELNRFEKREFLERVREGYLVLAREH-PER-IVVLDGKRSIEEIHRDVVREVK 190 (197)
T ss_dssp CCHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHC-TTT-EEEEETTSCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHhC-CCC-EEEEeCCCCHHHHHHHHHHHHH
Confidence 345888899988876555566666665444433211 111 2333 34589999988877654
No 152
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.12 E-value=3.6e-05 Score=70.08 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=86.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhh------hHHHHH
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGK------FLEFAS 204 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~------~~E~~~ 204 (399)
.+|.+++|.|++||||||+++.|...+.. .|..+. +++.+.... +| ..+...+..+. ..+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v~-~~~~p~~~~---~g------~~i~~~l~~~~~~~~~~~~~~ll 72 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEVQ-LTREPGGTP---LA------ERIRELLLAPSDEPMAADTELLL 72 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEE-EEESSCSSH---HH------HHHHHHHHSCCSSCCCHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcc-cccCCCCCH---HH------HHHHHHHhcCCCCCCCHHHHHHH
Confidence 46899999999999999999999887653 343442 344332110 00 11222221110 111122
Q ss_pred HhccccCCcHHHHHHHHHcCCceEEecch------h---------hHHHHH---cCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 205 VHGNLYGTSVEAVEAVADAGKRCILDIDV------Q---------GARSVR---ASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g~~~vldld~------~---------g~~~l~---~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
|....+......+...+..|..+++|--. + -...+. ...+.+-.++..+.+.+++-+|+..|
T Consensus 73 f~a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R 152 (213)
T 4edh_A 73 MFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAAR 152 (213)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 22221111223355556778888877311 1 111111 11222222333333468888999877
Q ss_pred C---CCc--HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 267 G---TET--EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 267 D---~~~--~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
+ ... ..+++++++....++.... ...+.+|-.+.+++++.+.+.+++
T Consensus 153 ~~~dr~E~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~~s~eeV~~~I~~~l 204 (213)
T 4edh_A 153 GRLDRFEQEDRRFFEAVRQTYLQRAAQA-PERYQVLDAGLPLAEVQAGLDRLL 204 (213)
T ss_dssp SSCCTTTTSCHHHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHH
T ss_pred CCcCcccccHHHHHHHHHHHHHHHHHHC-CCcEEEEeCCCCHHHHHHHHHHHH
Confidence 4 221 1356666665554443211 223344445568988888776654
No 153
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.12 E-value=3.3e-06 Score=78.75 Aligned_cols=32 Identities=34% Similarity=0.458 Sum_probs=27.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhh---hccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLM---KEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~---~~~~~~~g 162 (399)
.+|++++|+|||||||||++++|+ |...+..|
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g 59 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSG 59 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCC
Confidence 468999999999999999999999 76655555
No 154
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.10 E-value=5.4e-05 Score=65.11 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+++|+||+||||||+.+.|+..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998765
No 155
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.05 E-value=0.0001 Score=65.68 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5789999999999999999999987653
No 156
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.05 E-value=4.6e-07 Score=85.70 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+|++++|+||||||||||+..|++..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999999865
No 157
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.04 E-value=1.3e-05 Score=71.87 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+|.+++|.|++||||||+.+.|...+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987653
No 158
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.01 E-value=0.00015 Score=63.35 Aligned_cols=26 Identities=46% Similarity=0.760 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+|.+++|+|++||||||+.+.|+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999998754
No 159
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.96 E-value=1.2e-06 Score=84.25 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC--Cccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP--SMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~--~~~g 162 (399)
.+|++++|+||||||||||+++|++++. +..|
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 4789999999999999999999999887 6666
No 160
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.95 E-value=1.6e-05 Score=75.53 Aligned_cols=85 Identities=20% Similarity=0.224 Sum_probs=50.9
Q ss_pred CccccchhhhhccCCCceEEEEeCCCh---HHHHHH---HHHhCCeEEEeccC-ccC-----------------------
Q 015825 81 LLNEDRILVIKKGSSSDDCLWFLEVDT---PYVREQ---KKVVGAEVVAWSKG-VIG----------------------- 130 (399)
Q Consensus 81 ~l~~dr~L~~~~~~~~~~~i~~~k~D~---~~~~~l---~~~~g~~v~~~s~~-~~~----------------------- 130 (399)
.+ ++++ .+.+.+|++||+|. +..+.+ .+..|++++.+|+. ..+
T Consensus 43 ~l--~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~ 115 (282)
T 1puj_A 43 MI--EDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKG 115 (282)
T ss_dssp HH--HHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HH--HHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45 5665 46778999999993 222222 24568899888865 111
Q ss_pred --CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc
Q 015825 131 --NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR 173 (399)
Q Consensus 131 --~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~ 173 (399)
..+-.++++|.+|+|||||+|.|.+......+ ..+.+|+...
T Consensus 116 ~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~ 159 (282)
T 1puj_A 116 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQ 159 (282)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------C
T ss_pred CCCCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeE
Confidence 01235899999999999999999987655455 4555666554
No 161
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.93 E-value=9.2e-05 Score=64.30 Aligned_cols=27 Identities=22% Similarity=0.520 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+.+++|+|+|||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
No 162
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.92 E-value=5e-06 Score=75.68 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=44.5
Q ss_pred EEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC--CHHHHHHHHHHhhc
Q 015825 248 FIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND--KLEECYENLKKHLG 315 (399)
Q Consensus 248 ~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h--dleea~~~l~~ii~ 315 (399)
++++..| .++.-+|+..||..+++++.+++.. ++...+....+|+||.|. ++++...++++++.
T Consensus 135 vi~V~ap-~e~r~~Rl~~Rdg~s~eea~~ri~~---Q~~~eek~~~AD~VIdN~~gsle~l~~qV~~l~~ 200 (210)
T 4i1u_A 135 VLVVDCP-VDTQIARVMQRNGFTREQVEAIIAR---QATREARLAAADDVIVNDAATPDALAVQVDALHQ 200 (210)
T ss_dssp EEEEECC-HHHHHHHHHHHHCCCHHHHHHHHHH---SCCHHHHHHTCSEEEECSSCCHHHHHHHHHHHHH
T ss_pred EEEEECC-HHHHHHHHHhcCCCCHHHHHHHHHH---cCChHHHHHhCCEEEECCCCCHHHHHHHHHHHHH
Confidence 3444433 6888899999988888998888765 222111123568998887 89998888877654
No 163
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.92 E-value=0.00011 Score=64.79 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+.+++|+|++||||||+.+.|+..+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998865
No 164
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.92 E-value=3.4e-05 Score=66.89 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhh
Q 015825 134 KPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
.+++|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 165
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.90 E-value=9.5e-06 Score=73.71 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+..++|+||+||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999987653
No 166
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.89 E-value=8.4e-05 Score=66.14 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
...+++|.|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998765
No 167
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.87 E-value=0.00022 Score=64.92 Aligned_cols=169 Identities=20% Similarity=0.213 Sum_probs=84.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccc-eeeecCCCccccccCCeeEEecChHHHHHHHhh------hh---hHH
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGF-SVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKD------GK---FLE 201 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~-~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~------~~---~~E 201 (399)
+|.+++|.|++||||||+++.|...+.. .|. .+ .+|+.+.... +| ......+.. .. ..+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v-~~~rep~~t~---~g------~~ir~~l~~~~~~~~~~~~~~~e 70 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDM-VFTREPGGTQ---LA------EKLRSLLLDIKSVGDEVITDKAE 70 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCE-EEEESSCSSH---HH------HHHHHHHHSTTTTTTCCCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcc-eeeeCCCCCH---HH------HHHHHHHhcccccccccCChHHH
Confidence 5889999999999999999999887643 332 22 3444432110 00 111111110 00 011
Q ss_pred HHHHhccccCCcHHHHHHHHHcCCceEEecch------hh---------HHHHH---c--CCcceeEEEEcCCChHHHHH
Q 015825 202 FASVHGNLYGTSVEAVEAVADAGKRCILDIDV------QG---------ARSVR---A--SPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~------~g---------~~~l~---~--~~~~~~~ili~~P~lllLDE 261 (399)
...|...-+......+...++.|..++.|--. ++ ...+. . ..++. ++++. -+.+++-+
T Consensus 71 ~lL~~A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl-~i~Ld-v~~e~~~~ 148 (213)
T 4tmk_A 71 VLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDL-TLYLD-VTPEVGLK 148 (213)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSE-EEEEE-CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCE-EEEEe-CCHHHHHH
Confidence 22222111111123355567788888888311 11 11111 1 12333 33333 33577788
Q ss_pred HHHhCCC---Cc--HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 262 RLRARGT---ET--EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 262 pl~~lD~---~~--~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
|+..|+. .. ...++++++....++.... ..+.+|-.+.+++++.+.+.+++.
T Consensus 149 Ri~~R~~~dr~E~~~~~f~~rv~~~y~~la~~~--~~~~vIDa~~s~eeV~~~I~~~l~ 205 (213)
T 4tmk_A 149 RARARGELDRIEQESFDFFNRTRARYLELAAQD--KSIHTIDATQPLEAVMDAIRTTVT 205 (213)
T ss_dssp HHHHHSSCCTTTTSCHHHHHHHHHHHHHHHHTC--TTEEEEETTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCccchhhhHHHHHHHHHHHHHHHHHHC--CcEEEECCCCCHHHHHHHHHHHHH
Confidence 8876632 11 2356666665554443211 233444455689998887766553
No 168
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.86 E-value=0.00078 Score=58.72 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 169
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.85 E-value=9.7e-07 Score=87.90 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=39.9
Q ss_pred CC--ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhh-cccCC-eeee
Q 015825 253 PP--SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHL-GLDGS-IATN 323 (399)
Q Consensus 253 ~P--~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii-~~~~~-~~~~ 323 (399)
+| +++++||++...|+...+..+.++.... .. ...+ +++|..++....+++++ .+.+| +...
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~---~~----~g~t--i~sh~~~~~~~l~~~i~~~L~~G~~~~~ 204 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKIT---SR----GANT--LEMKAKKEEQAIIEKVYQYLTETKQPIR 204 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CC----SSCS--SSHHHHHHHHHHHHHHHHHHHTTCSCGG
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHH---Hh----cCCc--cccccHHHHHHHHHHHHHHhccCCceee
Confidence 67 8999999999998766555555554420 11 1112 23788888888888877 56666 4443
No 170
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.85 E-value=2.1e-05 Score=77.60 Aligned_cols=62 Identities=24% Similarity=0.245 Sum_probs=46.7
Q ss_pred CCceEEEEeCCCh--H-----HHH----HHHHHhCC---eEEEeccC-ccC-----------CCCcEEEEEcCCCCCHHH
Q 015825 95 SSDDCLWFLEVDT--P-----YVR----EQKKVVGA---EVVAWSKG-VIG-----------NVEKPVVITGPSGVGKGT 148 (399)
Q Consensus 95 ~~~~~i~~~k~D~--~-----~~~----~l~~~~g~---~v~~~s~~-~~~-----------~~g~~~~l~GpsG~GKST 148 (399)
+.+.++++||+|. . .+. +..+..|+ +++.+|+. ..+ ..++.++++|++|+||||
T Consensus 98 ~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~~~i~~vG~~nvGKSt 177 (369)
T 3ec1_A 98 DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKST 177 (369)
T ss_dssp TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTTSCEEEECCTTSSHHH
T ss_pred CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcccCcEEEEcCCCCchHH
Confidence 6678889999993 1 122 22356777 78888876 222 257889999999999999
Q ss_pred HHhhhhhc
Q 015825 149 LISMLMKE 156 (399)
Q Consensus 149 l~~~L~~~ 156 (399)
|+|.|.+.
T Consensus 178 liN~L~~~ 185 (369)
T 3ec1_A 178 FINRIIEE 185 (369)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999987
No 171
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.82 E-value=1.2e-05 Score=77.44 Aligned_cols=89 Identities=26% Similarity=0.296 Sum_probs=58.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcc--------cceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMF--------GFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~--------g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
++++++|+||+|||||||...|+..++... -..+..+|+.++..+..++.|+|.+...+......+.|.+..
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a 81 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA 81 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence 356899999999999999999998765310 113346888888889999999988754443333222333221
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEe
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILD 230 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vld 230 (399)
...+.++.+.|...++-
T Consensus 82 ----------~~~i~~i~~~gk~pIlV 98 (322)
T 3exa_A 82 ----------TPLITEIHERGRLPFLV 98 (322)
T ss_dssp ----------HHHHHHHHHTTCEEEEE
T ss_pred ----------HHHHHHHHhCCCcEEEE
Confidence 34455555666665544
No 172
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.82 E-value=1.9e-05 Score=77.87 Aligned_cols=63 Identities=30% Similarity=0.329 Sum_probs=47.8
Q ss_pred CCceEEEEeCCCh--H-----HHH----HHHHHhCC---eEEEeccC-ccC-----------CCCcEEEEEcCCCCCHHH
Q 015825 95 SSDDCLWFLEVDT--P-----YVR----EQKKVVGA---EVVAWSKG-VIG-----------NVEKPVVITGPSGVGKGT 148 (399)
Q Consensus 95 ~~~~~i~~~k~D~--~-----~~~----~l~~~~g~---~v~~~s~~-~~~-----------~~g~~~~l~GpsG~GKST 148 (399)
+.+.+|++||+|. . .++ ...+..|+ +++.+|+. ..+ .++..++++|.+|+||||
T Consensus 96 ~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~~~~i~~vG~~nvGKSt 175 (368)
T 3h2y_A 96 NNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKST 175 (368)
T ss_dssp SSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHTTSCEEEEEBTTSSHHH
T ss_pred CCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcccceEEEecCCCCChhH
Confidence 6788899999993 1 222 22466788 78888876 222 257889999999999999
Q ss_pred HHhhhhhcc
Q 015825 149 LISMLMKEF 157 (399)
Q Consensus 149 l~~~L~~~~ 157 (399)
|+|.|.+..
T Consensus 176 liN~L~~~~ 184 (368)
T 3h2y_A 176 FINRMIKEF 184 (368)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999999864
No 173
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.80 E-value=4.8e-05 Score=66.67 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+++|.|++||||||+.+.|...+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999988664
No 174
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.80 E-value=7.1e-06 Score=73.97 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.+|++++|+||||||||||+++|++.+++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47899999999999999999999999874
No 175
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.79 E-value=1e-06 Score=88.41 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=22.1
Q ss_pred EEEEcCCCCCHHHHHhhhhhccCC
Q 015825 136 VVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
++|+||||||||||+++|+|...+
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 699999999999999999998764
No 176
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.79 E-value=0.0012 Score=58.44 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
...+.+++|+|++||||||+.+.|+..+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567889999999999999999998754
No 177
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.78 E-value=1.3e-05 Score=79.77 Aligned_cols=69 Identities=23% Similarity=0.321 Sum_probs=47.4
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcc--------cceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMF--------GFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~--------g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
..+++|+||+|||||||...|+..++... -..+.++|+.+...+..++.|+|.+...+......+.|.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~ 78 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFET 78 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHH
Confidence 35789999999999999999987764310 0123457888888899999999876443333333333433
No 178
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.78 E-value=0.00017 Score=63.12 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998755
No 179
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.77 E-value=3.3e-06 Score=84.83 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=39.8
Q ss_pred cCCCCcE--EEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 129 IGNVEKP--VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 129 ~~~~g~~--~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
...+|++ ++|+||||||||||+|+|+|.. ..|..+...+.. .....++|++|...+++.+ ++.++..+
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--l~g~~~~~~~~~---~~~~~i~~v~Q~~~l~~~l----tv~D~~~~ 105 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTK--FEGEPATHTQPG---VQLQSNTYDLQESNVRLKL----TIVSTVGF 105 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--C-------CCSS---CEEEEEEEEEEC--CEEEE----EEEEEECC
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCcc--ccCCcCCCCCcc---ceEeeEEEEeecCcccccc----chhhhhhh
Confidence 4468999 9999999999999999999984 233233221111 1123478999886554433 55555443
No 180
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.76 E-value=1.2e-05 Score=79.60 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=38.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCc-ccceeeecCCCccccccCCeeEEecC
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSM-FGFSVSHTTRAPRAMEKDGVHYHFTE 186 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~-~g~~i~~ttr~~~~~~~~~i~yvfq~ 186 (399)
..+|++++|+||||||||||+++|++.+++. .| .+.....+........++|++|.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g-~I~~~e~~~e~~~~~~~~~v~Q~ 189 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSY-HIITIEDPIEYVFKHKKSIVNQR 189 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCC-EEEEEESSCCSCCCCSSSEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCc-EEEEecccHhhhhccCceEEEee
Confidence 3578999999999999999999999998876 56 44221112221222346778773
No 181
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.76 E-value=0.00018 Score=64.12 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=35.7
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHH----HHHHHHHHhh
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLE----ECYENLKKHL 314 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dle----ea~~~l~~ii 314 (399)
..+++.. +.+++-+|+..|+..+.+++.+++.........+ ..+|++|.|. +++ ++.+.+.+++
T Consensus 126 ~vi~l~~-~~e~~~~Rl~~R~~~~~e~~~~r~~~q~~~~~~~---~~ad~vIdn~~~~~~~~~~~~~~i~~~~ 194 (206)
T 1jjv_A 126 RILVVDV-SPQTQLARSAQRDNNNFEQIQRIMNSQVSQQERL---KWADDVINNDAELAQNLPHLQQKVLELH 194 (206)
T ss_dssp EEEEEEC-CHHHHHHHHC-----CHHHHHHHHHHSCCHHHHH---HHCSEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHhcCChHHHH---HhCCEEEECCCCccccHHHHHHHHHHHH
Confidence 3455544 4688889998887667777877776411011111 1347777665 788 7777776654
No 182
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.75 E-value=4.3e-06 Score=81.56 Aligned_cols=33 Identities=33% Similarity=0.254 Sum_probs=29.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
..+|++++|+||||||||||+++|++.+.+..|
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g 84 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH 84 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence 457999999999999999999999998877666
No 183
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.74 E-value=0.00044 Score=63.63 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++|+||+||||||+.+.|+..+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998765
No 184
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.73 E-value=0.00037 Score=64.98 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
|+.++|+|++||||||+.++|++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999999999865
No 185
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.73 E-value=6.5e-05 Score=68.95 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=31.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP 172 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~ 172 (399)
..+|.+++|.|++||||||+++.|...+....|..+..+|+.+
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP 60 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREP 60 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCC
Confidence 3578999999999999999999999876531344454434443
No 186
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.72 E-value=7.6e-05 Score=69.54 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=62.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCc--ccce------eeecCCCccccccCCeeEEecChHHHHH-HHhhhhhHHHHH
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSM--FGFS------VSHTTRAPRAMEKDGVHYHFTERSVMEK-AIKDGKFLEFAS 204 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~--~g~~------i~~ttr~~~~~~~~~i~yvfq~~~lf~~-~~~~~~~~E~~~ 204 (399)
++++|+||+||||||+.+.|++.+... .... ...+|..+...+..++.|+|.+...+.. ......|.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~- 80 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRL- 80 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHH-
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHH-
Confidence 468999999999999999998765321 0000 0123444444555667777665321110 00001111111
Q ss_pred HhccccCCcHHHHHHHHHcCCceEEecch-hhHHHHH-c----CCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 205 VHGNLYGTSVEAVEAVADAGKRCILDIDV-QGARSVR-A----SPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g~~~vldld~-~g~~~l~-~----~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
...+ +.+..+..++++... .-.+.+. . .......+++..|..+.+.+|+..|.
T Consensus 81 ---------~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 81 ---------IFEV-DWRKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp ---------HHHH-HTTTTSSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred ---------HHHH-HHHhCCCCeEEeccHHHHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence 1222 223455566665422 1222222 2 22334556666665588888887663
No 187
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.71 E-value=0.00016 Score=65.83 Aligned_cols=23 Identities=35% Similarity=0.728 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998755
No 188
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.71 E-value=0.0005 Score=60.16 Aligned_cols=65 Identities=15% Similarity=0.286 Sum_probs=37.6
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhc
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLG 315 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~ 315 (399)
.++++.-| .+++-+|+..++....+++.+++.....+..... . ..+++.++ +++++.+.+.+++.
T Consensus 125 ~vi~l~~~-~e~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~Id~~~~~~~~~~~i~~~l~ 190 (195)
T 2pbr_A 125 ITLLLDIP-VDIALRRLKEKNRFENKEFLEKVRKGFLELAKEE--E-NVVVIDASGEEEEVFKEILRALS 190 (195)
T ss_dssp EEEEEECC-HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHS--T-TEEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCC-HHHHHHHhhccCccchHHHHHHHHHHHHHHHhhC--C-CEEEEECCCCHHHHHHHHHHHHH
Confidence 34444433 5888889887765444556666655433332111 1 13555554 88998888877653
No 189
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.69 E-value=0.002 Score=58.35 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++..++|.|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998755
No 190
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.66 E-value=0.00053 Score=61.87 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
|++++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999998764
No 191
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.65 E-value=0.0023 Score=55.77 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998754
No 192
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.63 E-value=4.2e-06 Score=77.14 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
++++|+||||||||||+++|++.+.+..|
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence 67899999999999999999999998877
No 193
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.62 E-value=2.3e-05 Score=79.88 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=29.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
..+ ++++|+||||||||||+++|+|++++..|
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 346 99999999999999999999999999877
No 194
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.62 E-value=0.0011 Score=59.69 Aligned_cols=26 Identities=31% Similarity=0.648 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++..++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 195
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.61 E-value=2.5e-05 Score=75.13 Aligned_cols=59 Identities=22% Similarity=0.211 Sum_probs=44.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCc--------ccceeeecCCCccccccCCeeEEecChHHH
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSM--------FGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~--------~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf 190 (399)
..++++|+||+|||||||...|+..++.. .-..+.++|+.++..+..++.|+|.+...+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~ 75 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDP 75 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCc
Confidence 35689999999999999999999876521 011234688888888888899998875444
No 196
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.59 E-value=0.00049 Score=62.70 Aligned_cols=167 Identities=13% Similarity=0.140 Sum_probs=83.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhh-----hhHHHHHHh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDG-----KFLEFASVH 206 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~-----~~~E~~~~~ 206 (399)
+|.+++|.|++||||||+++.|...+.. .+ . .++.+..... .| ......+... ...+.+.|.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~-~---~~~ep~~~t~--~g------~~ir~~l~~~~~~~~~~~~~llf~ 70 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP-NC-K---LLKFPERSTR--IG------GLINEYLTDDSFQLSDQAIHLLFS 70 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS-SE-E---EEESSCTTSH--HH------HHHHHHHHCTTSCCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc-cc-e---EEEecCCCCh--HH------HHHHHHHHhcccCCCHHHHHHHHH
Confidence 6899999999999999999999987754 12 1 1222210000 00 0111111110 111222333
Q ss_pred ccccCCcHHHHHHHHHcCCceEEecch------hh--------HHHHHc---C--CcceeEEEE--cCCChHHHHHHHHh
Q 015825 207 GNLYGTSVEAVEAVADAGKRCILDIDV------QG--------ARSVRA---S--PLDAIFIFI--CPPSMEELEERLRA 265 (399)
Q Consensus 207 ~~~~g~~~~~i~~~~~~g~~~vldld~------~g--------~~~l~~---~--~~~~~~ili--~~P~lllLDEpl~~ 265 (399)
..-+. ..+.+...++.|..++.|--. ++ ...+.. . .++ +++++ .+| ++.-+|...
T Consensus 71 a~R~~-~~~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PD-lti~L~dv~p--e~~~~R~~~ 146 (216)
T 3tmk_A 71 ANRWE-IVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPD-LTLFLSTQDV--DNNAEKSGF 146 (216)
T ss_dssp HHHHT-THHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCS-EEEEEECSCC--SCGGGCCSS
T ss_pred HHHHH-HHHHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCC-EEEEEeCCCH--HHHHHHhcc
Confidence 22232 345667777888888888311 11 111111 1 223 33444 344 334455432
Q ss_pred C-CCCcHHHHHHHHHHHHHHHHhc---cCCCcceEEE-eCCCHHHHHHHHHHhhc
Q 015825 266 R-GTETEDQILKRLRNAKEEIKQG---KSSGIFDHIL-YNDKLEECYENLKKHLG 315 (399)
Q Consensus 266 l-D~~~~e~i~~~L~~~~~~l~~~---~~~~~~t~Vi-v~hdleea~~~l~~ii~ 315 (399)
+ |......+++++++...++... .....+.+|- .+.+++++.+.+.+++.
T Consensus 147 ~~dr~E~~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~ 201 (216)
T 3tmk_A 147 GDERYETVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVE 201 (216)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 2 3222357777777766554331 0122333333 35689998888776554
No 197
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.59 E-value=0.00018 Score=64.20 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+|.+++|.|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999998764
No 198
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.56 E-value=0.00013 Score=73.12 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++++|+|++||||||+.+.|+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 56889999999999999999998754
No 199
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.55 E-value=3e-05 Score=69.34 Aligned_cols=31 Identities=32% Similarity=0.320 Sum_probs=27.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
.+|++++|+|||||||||++++|++.+. ..|
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G 53 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY-QKG 53 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH-HTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-hcC
Confidence 5799999999999999999999999875 345
No 200
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.55 E-value=0.00085 Score=57.69 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++++|.|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998754
No 201
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.55 E-value=0.00091 Score=60.31 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++..++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998865
No 202
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.54 E-value=0.00017 Score=68.28 Aligned_cols=65 Identities=14% Similarity=0.056 Sum_probs=41.2
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhc
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLG 315 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~ 315 (399)
..+++..| .+++-+|+..|+..+.+.+.+++.......... ..++++|.|. +++++.+.+.+++.
T Consensus 202 ~vI~l~a~-~ev~~~Rl~~R~g~s~e~~~~ri~~q~~~~~~~---~~AD~vIdn~~s~eel~~~I~~~l~ 267 (281)
T 2f6r_A 202 EVWTVVIP-ETEAVRRIVERDGLSEAAAQSRLQSQMSGQQLV---EQSNVVLSTLWESHVTQSQVEKAWN 267 (281)
T ss_dssp EEEEEECC-HHHHHHHHHHHHCCCHHHHHHHHHTSCCHHHHH---HTCSEEEECSSCHHHHHHHHHHHHH
T ss_pred EEEEEcCC-HHHHHHHHHHcCCCCHHHHHHHHHHcCChHhhH---hhCCEEEECCCCHHHHHHHHHHHHH
Confidence 44555544 688888988886556677777665431111111 1357788776 88998888877654
No 203
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.53 E-value=4e-05 Score=66.34 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+++++|+|||||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999999764
No 204
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.48 E-value=0.00024 Score=62.34 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+.+++|+|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998754
No 205
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.47 E-value=0.0047 Score=56.23 Aligned_cols=27 Identities=41% Similarity=0.620 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..+..++|+|++||||||+.+.|+..+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
No 206
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.45 E-value=0.00015 Score=73.01 Aligned_cols=79 Identities=27% Similarity=0.306 Sum_probs=47.2
Q ss_pred cCCCceEEEEeCCCh-HH-HHHH-H--HHhCC-eEEEeccC-ccC---------------C-C---------CcEEEEEc
Q 015825 93 GSSSDDCLWFLEVDT-PY-VREQ-K--KVVGA-EVVAWSKG-VIG---------------N-V---------EKPVVITG 140 (399)
Q Consensus 93 ~~~~~~~i~~~k~D~-~~-~~~l-~--~~~g~-~v~~~s~~-~~~---------------~-~---------g~~~~l~G 140 (399)
..+.+.+++.||+|. +. .... . ..+|+ +++.+|+. ..+ . . .-.++|+|
T Consensus 108 ~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG 187 (439)
T 1mky_A 108 KSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVG 187 (439)
T ss_dssp HHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEEC
T ss_pred HcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEEC
Confidence 357889999999994 22 1111 1 24565 67777765 111 0 1 12689999
Q ss_pred CCCCCHHHHHhhhhhccCCcccceeeecCCCc
Q 015825 141 PSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP 172 (399)
Q Consensus 141 psG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~ 172 (399)
+||||||||+|.|++......+ ..+.+|+.+
T Consensus 188 ~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~ 218 (439)
T 1mky_A 188 RPNVGKSTLFNAILNKERALVS-PIPGTTRDP 218 (439)
T ss_dssp STTSSHHHHHHHHHTSTTEEEC-CCC------
T ss_pred CCCCCHHHHHHHHhCCcccccC-CCCCCcCCc
Confidence 9999999999999997643222 333455443
No 207
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.42 E-value=0.0018 Score=56.95 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998653
No 208
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.41 E-value=0.00014 Score=74.77 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~ 166 (399)
.+|+.++|+||||||||||+++|++++++..| .+.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~g-iit 292 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAK-VVS 292 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCC-EEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCC-EEE
Confidence 37889999999999999999999999998777 443
No 209
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.37 E-value=0.0014 Score=55.98 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998854
No 210
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.37 E-value=8.9e-05 Score=74.36 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF 163 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~ 163 (399)
.+|.+++|+||||||||||+++|++.+++..|.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~ 197 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 197 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCE
Confidence 368899999999999999999999999887773
No 211
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.37 E-value=7.4e-05 Score=66.47 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=26.1
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
....+|..++|+|+||||||||++.|++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345688999999999999999999999876
No 212
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.36 E-value=3.9e-05 Score=68.67 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
++++|.|++||||||+++.|...+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999987653
No 213
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.35 E-value=3.1e-05 Score=68.12 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=25.1
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSM 160 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~ 160 (399)
++++|+|+||||||||++.|++++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999999998775
No 214
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.32 E-value=7.5e-05 Score=66.82 Aligned_cols=32 Identities=25% Similarity=0.094 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
.+|.+++|+|||||||||++++|.+.+++..|
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 46889999999999999999999998765444
No 215
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.32 E-value=4.9e-05 Score=66.48 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=27.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
.+|+.++|.||+|+|||||+++|++...+..|
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 35899999999999999999999998754444
No 216
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.28 E-value=0.00093 Score=63.12 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.+++|+|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 217
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.27 E-value=0.0025 Score=54.69 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998754
No 218
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.26 E-value=0.00016 Score=63.14 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
+| +.+|+||||||||||+++|...+.+..+
T Consensus 26 ~g-~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 26 KG-FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 44 9999999999999999999988765443
No 219
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.25 E-value=0.0033 Score=56.18 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=80.8
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhh---hHHHHHHhccccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGK---FLEFASVHGNLYG 211 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~---~~E~~~~~~~~~g 211 (399)
+++|=|+-||||||+++.|...+.. .|..+.. |+.|..... ......++.... ..+...|... +.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~-~g~~v~~-treP~~t~~---------~~~ir~~l~~~~~~~~~~~ll~~a~-r~ 69 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK-RGKKVIL-KREPGGTET---------GEKIRKILLEEEVTPKAELFLFLAS-RN 69 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEE-EESSCSSHH---------HHHHHHHHHHSCCCHHHHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEE-EECCCCCcH---------HHHHHHHhhcccCChHHHHHHHHHH-HH
Confidence 5788999999999999999887643 3434333 332211100 001111110000 0011111111 01
Q ss_pred CcHHHHHHHHHcCCceEEecch------hh---------HHHH---Hc--CCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 212 TSVEAVEAVADAGKRCILDIDV------QG---------ARSV---RA--SPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 212 ~~~~~i~~~~~~g~~~vldld~------~g---------~~~l---~~--~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.....+...+..|..++.|--. ++ ...+ .. ..++. ++++.- +.++.-+|...+|....
T Consensus 70 ~~~~~I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl-~i~Ld~-~~e~~~~R~~~~dr~e~ 147 (197)
T 3hjn_A 70 LLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDL-TFYIDV-DVETALKRKGELNRFEK 147 (197)
T ss_dssp HHHHHHHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSE-EEEEEC-CHHHHHHHC---CTTCC
T ss_pred HHHHHHHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCc-eeecCc-ChHHHHHhCcCcCcccc
Confidence 1123455666778888877311 11 1111 11 12333 333333 34666778777776555
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
.++++++++...++.... +..+.+|-.+.+++++.+.+.+.+.
T Consensus 148 ~ef~~rv~~~y~~la~~~-~~~~~~IDa~~~~eeV~~~I~~~i~ 190 (197)
T 3hjn_A 148 REFLERVREGYLVLAREH-PERIVVLDGKRSIEEIHRDVVREVK 190 (197)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhC-CCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 677777776655553321 2233444455689998888877654
No 220
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.24 E-value=9.2e-05 Score=63.37 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
+|+.++|+||+|+|||||+++|++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999999997753
No 221
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.23 E-value=0.0037 Score=54.34 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 222
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.16 E-value=0.00018 Score=69.64 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=37.4
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCccc--------ceeeecCCCccccccCCeeEEecC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFG--------FSVSHTTRAPRAMEKDGVHYHFTE 186 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g--------~~i~~ttr~~~~~~~~~i~yvfq~ 186 (399)
+.++|+||+|||||||.+.|+..+....- ....++|..+...+..++.|+|.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid 66 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLID 66 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEee
Confidence 58999999999999999999987642100 011235666666666777787665
No 223
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.13 E-value=0.0067 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.635 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998754
No 224
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.09 E-value=0.00023 Score=63.59 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++++++|+|+|||||||+++.|.+.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3478899999999999999999999976
No 225
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.09 E-value=0.00021 Score=64.55 Aligned_cols=25 Identities=40% Similarity=0.724 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.+++|+|||||||||+++.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 226
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.07 E-value=0.00021 Score=68.84 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++++|+|+||||||||+|.|.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 578999999999999999999986
No 227
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.05 E-value=0.00025 Score=61.88 Aligned_cols=29 Identities=31% Similarity=0.249 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.+|++++|+|++||||||++++|.+.+.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46899999999999999999999987643
No 228
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.02 E-value=0.0024 Score=58.36 Aligned_cols=74 Identities=22% Similarity=0.203 Sum_probs=45.6
Q ss_pred CCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH-hc--------cCCCcceEEEeCC--CHHHHHHHH
Q 015825 242 SPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK-QG--------KSSGIFDHILYND--KLEECYENL 310 (399)
Q Consensus 242 ~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~-~~--------~~~~~~t~Viv~h--dleea~~~l 310 (399)
.....+.+|+..| ++.+-+|+..+.....++..+.+++..++-. .+ .....++++|-+. .++++.+.+
T Consensus 134 ~~~~~~~VfL~A~-~e~r~~Ri~~~~~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I 212 (223)
T 3hdt_A 134 DIERLIRIFVYTD-KVKKVQRVMEVDCIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELI 212 (223)
T ss_dssp TCCEEEEEEEECC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHH
T ss_pred CCCCeEEEEEECC-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHH
Confidence 3344677888765 7888888875543444566666655433211 11 1123468888776 789999888
Q ss_pred HHhhcc
Q 015825 311 KKHLGL 316 (399)
Q Consensus 311 ~~ii~~ 316 (399)
...+..
T Consensus 213 ~~~i~~ 218 (223)
T 3hdt_A 213 KAYIRL 218 (223)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
No 229
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.02 E-value=0.0035 Score=58.27 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++.+++|+|++||||||+.+.|...+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998753
No 230
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.99 E-value=0.00029 Score=68.13 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+++|+|||||||||++++|.+++.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999999999875
No 231
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.97 E-value=0.0003 Score=67.23 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHhhhhhc-cCCccc
Q 015825 136 VVITGPSGVGKGTLISMLMKE-FPSMFG 162 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~-~~~~~g 162 (399)
++|+||||||||||+++|.+. ..+..|
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC--------
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 499999999999999999986 555555
No 232
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.93 E-value=0.00041 Score=61.12 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.++|+|+||||||||++.|++...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999997643
No 233
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.91 E-value=0.014 Score=52.05 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=43.0
Q ss_pred cceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH----hc-----cCCCcceEEEeCC--CHHHHHHHHHH
Q 015825 244 LDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK----QG-----KSSGIFDHILYND--KLEECYENLKK 312 (399)
Q Consensus 244 ~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~----~~-----~~~~~~t~Viv~h--dleea~~~l~~ 312 (399)
...+.+|+..| ++.+-+|+..+...+.++..+.+.+...+-. .+ .....++++|-|. +++++.+.+..
T Consensus 116 ~~~~~V~L~A~-~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~ 194 (201)
T 3fdi_A 116 PNMISAFILGD-KDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIK 194 (201)
T ss_dssp TTEEEEEEEEC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHH
T ss_pred CCeEEEEEECC-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHH
Confidence 34667777765 7888888875544455666666654433211 10 1122357887765 78999888877
Q ss_pred hhc
Q 015825 313 HLG 315 (399)
Q Consensus 313 ii~ 315 (399)
.+.
T Consensus 195 ~i~ 197 (201)
T 3fdi_A 195 YID 197 (201)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 234
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.90 E-value=0.0002 Score=74.24 Aligned_cols=31 Identities=39% Similarity=0.415 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
+|++++|+|+||||||||+++|++.+.+..|
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 6899999999999999999999999876554
No 235
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.90 E-value=0.00091 Score=64.33 Aligned_cols=62 Identities=19% Similarity=0.144 Sum_probs=46.0
Q ss_pred CCceEEEEeCCCh--HHHHHHHHHhCCeEEEeccCc-c------------------------CCCCcEEEEEcCCCCCHH
Q 015825 95 SSDDCLWFLEVDT--PYVREQKKVVGAEVVAWSKGV-I------------------------GNVEKPVVITGPSGVGKG 147 (399)
Q Consensus 95 ~~~~~i~~~k~D~--~~~~~l~~~~g~~v~~~s~~~-~------------------------~~~g~~~~l~GpsG~GKS 147 (399)
.-.|+|+++|-|. +++-+..+..+.+++..+... . ...|+-+.|+|+||+|||
T Consensus 79 ~~~P~IIltrg~~~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKS 158 (314)
T 1ko7_A 79 PETPAIIVTRDLEPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKS 158 (314)
T ss_dssp TTCCCEEECTTCCCCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHH
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHH
Confidence 4578889999883 444445566788887765441 0 025899999999999999
Q ss_pred HHHhhhhhc
Q 015825 148 TLISMLMKE 156 (399)
Q Consensus 148 Tl~~~L~~~ 156 (399)
|++..|.+.
T Consensus 159 t~a~~l~~~ 167 (314)
T 1ko7_A 159 ETALELIKR 167 (314)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999999874
No 236
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.88 E-value=0.00035 Score=66.78 Aligned_cols=32 Identities=25% Similarity=0.167 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGF 163 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~ 163 (399)
+|++++|+|||||||||++..|++.+.+..|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~ 135 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK 135 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999988655563
No 237
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.83 E-value=0.00057 Score=62.06 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.+|++++|+||||||||||++.|++.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 48999999999999999999999984
No 238
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.81 E-value=0.00048 Score=65.57 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
++.+++|+||||||||||++.|.+.+.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5789999999999999999999998754
No 239
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.79 E-value=0.00059 Score=60.26 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999999875
No 240
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.78 E-value=0.00095 Score=64.45 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
..++++++++||+|+||||++..|++.+.+..+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~ 134 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGY 134 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 457899999999999999999999998876544
No 241
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.78 E-value=2.1e-05 Score=86.06 Aligned_cols=87 Identities=11% Similarity=0.074 Sum_probs=69.7
Q ss_pred HHcCCcceeEEEEcCCC--hHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 239 VRASPLDAIFIFICPPS--MEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 239 l~~~~~~~~~ili~~P~--lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
..+|++..+.+|+..|+ +++||||+++||+...+.+.+.|+++.+ ...++|+++||++.+. .+++++.+
T Consensus 468 Ge~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~--------~G~TvivVtHd~~~~~-~aD~ii~l 538 (916)
T 3pih_A 468 GESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD--------LGNTVIVVEHDEEVIR-NADHIIDI 538 (916)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT--------TTCEEEEECCCHHHHH-TCSEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh--------cCCEEEEEeCCHHHHH-hCCEEEEE
Confidence 34555666678887666 9999999999999999999999887642 1348999999998764 59999999
Q ss_pred ------cCCeeeecCCCccccCCC
Q 015825 317 ------DGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 317 ------~~~~~~~~~~~~~~~~~p 334 (399)
.+|.++..+++.++...+
T Consensus 539 gpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 539 GPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp ESSSGGGCSEEEEEECHHHHHHSC
T ss_pred cCCcccCCCEEEEeechhhhhcCc
Confidence 889999888887776544
No 242
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.77 E-value=0.00059 Score=60.58 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=39.3
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhc
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLG 315 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~ 315 (399)
..+++. .+.+++-+|+..|+ .+.+.+.+++......... ...++++|.|. +++++...+.+++.
T Consensus 126 ~~i~l~-~~~e~~~~Rl~~R~-~~~~~~~~~~~~~~~~~~~---~~~ad~vId~~~~~~~~~~~i~~~l~ 190 (204)
T 2if2_A 126 KLIVVY-APYEVCKERAIKRG-MSEEDFERRWKKQMPIEEK---VKYADYVIDNSGSIEETYKQVKKVYE 190 (204)
T ss_dssp EEEEEC-CCHHHHHHHHHHTC-CCHHHHHHHHTTSCCHHHH---GGGCSEECCCSSCHHHHHHHHHHHHH
T ss_pred EEEEEE-CCHHHHHHHHHHcC-CCHHHHHHHHHhCCChhHH---HhcCCEEEECCCCHHHHHHHHHHHHH
Confidence 445554 44788889998884 4556666666542211111 12346776665 88999888887664
No 243
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.77 E-value=0.00072 Score=58.46 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++..++|+|++|||||||++.|.+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999999864
No 244
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.75 E-value=0.00036 Score=64.39 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.5
Q ss_pred EEEEcCCCCCHHHHHhhhhhccC
Q 015825 136 VVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++|+||||||||||+++|++...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999764
No 245
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.74 E-value=0.00049 Score=61.82 Aligned_cols=32 Identities=25% Similarity=0.186 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
.+|.+++|+|++||||||+++.|.+.+.+..|
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 46899999999999999999999998764444
No 246
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.71 E-value=0.0013 Score=63.85 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=36.4
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCc--c------cceeeecCCCccccccCCeeEEecC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSM--F------GFSVSHTTRAPRAMEKDGVHYHFTE 186 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~--~------g~~i~~ttr~~~~~~~~~i~yvfq~ 186 (399)
.+++|+||+|||||||.+.|+..+... . -....++|..+...+..++.+++.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~d 68 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMID 68 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHH
Confidence 589999999999999999999876520 0 0012235555556666677777665
No 247
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.71 E-value=0.0008 Score=60.08 Aligned_cols=25 Identities=24% Similarity=0.122 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
.+|++++|+||||||||||++.|++
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999999998
No 248
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.67 E-value=0.00077 Score=63.50 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=22.4
Q ss_pred EEEEcCCCCCHHHHHhhhhhccCC
Q 015825 136 VVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
++|.||||||||||+++|++...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Confidence 999999999999999999998765
No 249
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.65 E-value=0.00047 Score=64.71 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.6
Q ss_pred EEEEcCCCCCHHHHHhhhhhccC
Q 015825 136 VVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++|+||||||||||+++|++...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 89999999999999999999764
No 250
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.65 E-value=0.0008 Score=58.95 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.+|.+++|+|++||||||+++.|+..+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999987654
No 251
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.65 E-value=5.9e-05 Score=82.42 Aligned_cols=86 Identities=9% Similarity=0.054 Sum_probs=68.4
Q ss_pred HHcCCcceeEEEEcC--CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 239 VRASPLDAIFIFICP--PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 239 l~~~~~~~~~ili~~--P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
..+|++..+.++... |.+.+||||+++||+...+.+.+.|+++++ . ..++|+++|++++. ..+|+++.+
T Consensus 508 GEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~-------G~TVIvVeHdl~~i-~~ADrIi~L 578 (972)
T 2r6f_A 508 GEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-L-------GNTLIVVEHDEDTM-LAADYLIDI 578 (972)
T ss_dssp HHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-T-------TCEEEEECCCHHHH-HSCSEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-C-------CCEEEEEecCHHHH-HhCCEEEEe
Confidence 345556666677776 489999999999999999999999998752 1 34899999999875 578999998
Q ss_pred ------cCCeeeecCCCccccCC
Q 015825 317 ------DGSIATNHQTSPKGIDL 333 (399)
Q Consensus 317 ------~~~~~~~~~~~~~~~~~ 333 (399)
.+|.++..+++.++...
T Consensus 579 gpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 579 GPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp CSSSGGGCCSEEEEECTTTTTTC
T ss_pred CCCccCCCCEEEEecCHHHHHhh
Confidence 68889988888776654
No 252
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.63 E-value=0.00095 Score=66.82 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSM 160 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~ 160 (399)
.|++++|+||||||||||+++|.++..+.
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 57999999999999999999999887653
No 253
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.60 E-value=0.0011 Score=56.56 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
...+.+|+|||||||||++.+|.-
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999874
No 254
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.60 E-value=0.00091 Score=58.79 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+++|+|+||||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999998764
No 255
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.59 E-value=0.00081 Score=64.53 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
.++++++|+|||||||||++..|++.+.+..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~ 133 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK 133 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC
Confidence 46899999999999999999999998865433
No 256
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.58 E-value=0.001 Score=65.67 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=25.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..+|++++|+||||||||||+++|++..
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999999865
No 257
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.54 E-value=0.0011 Score=56.62 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++|+|++|||||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 258
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.50 E-value=0.0013 Score=57.61 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++..++|+|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 36789999999999999999999886
No 259
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.49 E-value=0.0011 Score=64.75 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSM 160 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~ 160 (399)
.+.+++|+|++|||||||+|.|.+...+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 46789999999999999999999876544
No 260
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.48 E-value=0.0009 Score=64.71 Aligned_cols=25 Identities=36% Similarity=0.703 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
...++|.||||+|||||+++|++..
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3679999999999999999999987
No 261
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.47 E-value=0.0012 Score=57.49 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++.++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998754
No 262
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.44 E-value=0.0018 Score=64.92 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=44.7
Q ss_pred hccCCCceEEEEeCCCh-HHHHHHH--HHhCC-eEEEeccC-ccC-----------C----------CCcEEEEEcCCCC
Q 015825 91 KKGSSSDDCLWFLEVDT-PYVREQK--KVVGA-EVVAWSKG-VIG-----------N----------VEKPVVITGPSGV 144 (399)
Q Consensus 91 ~~~~~~~~~i~~~k~D~-~~~~~l~--~~~g~-~v~~~s~~-~~~-----------~----------~g~~~~l~GpsG~ 144 (399)
....+.+.+++.||+|. +...... ..+|. +++.+|+. ..+ + ....++++|.+||
T Consensus 107 l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nv 186 (436)
T 2hjg_A 107 LYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNV 186 (436)
T ss_dssp HTTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTS
T ss_pred HHHcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCC
Confidence 34568889999999994 2111110 23454 66777765 211 1 1236899999999
Q ss_pred CHHHHHhhhhhccC
Q 015825 145 GKGTLISMLMKEFP 158 (399)
Q Consensus 145 GKSTl~~~L~~~~~ 158 (399)
|||||++.|.+...
T Consensus 187 GKSSLin~l~~~~~ 200 (436)
T 2hjg_A 187 GKSSLVNAMLGEER 200 (436)
T ss_dssp SHHHHHHHHHTSTT
T ss_pred CHHHHHHHHhCCCc
Confidence 99999999998654
No 263
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.38 E-value=0.0014 Score=56.80 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+||+||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
No 264
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.38 E-value=0.0015 Score=56.91 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 265
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.35 E-value=0.0018 Score=58.16 Aligned_cols=64 Identities=13% Similarity=0.124 Sum_probs=38.0
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhh
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHL 314 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii 314 (399)
.++++.. +.+++-+|+..|+..+.+.+.+++......... ...++++|.|. +++++...+.+++
T Consensus 128 ~vi~l~~-~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~---~~~ad~vId~~~~~~~~~~~I~~~l 192 (218)
T 1vht_A 128 RVLVVDV-SPETQLKRTMQRDDVTREHVEQILAAQATREAR---LAVADDVIDNNGAPDAIASDVARLH 192 (218)
T ss_dssp EEEEEEC-CHHHHHHHHHHHHTCCHHHHHHHHHHSCCHHHH---HHHCSEEEECSSCTTSHHHHHHHHH
T ss_pred EEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHhcCChHHH---HHhCCEEEECCCCHHHHHHHHHHHH
Confidence 4555554 478888999887656667777776541111110 11346777665 6777777666654
No 266
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.34 E-value=0.0012 Score=61.05 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+..++|+|||||||||+.+.|...+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999998764
No 267
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.33 E-value=0.0015 Score=56.72 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=18.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++.+++|.|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998765
No 268
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.31 E-value=0.0024 Score=58.29 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
-.++|+|++|||||||++.|.+......+
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 46899999999999999999997654443
No 269
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.29 E-value=0.0019 Score=55.85 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
...++|+|++|||||||++.|++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999985
No 270
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.23 E-value=0.0022 Score=56.51 Aligned_cols=65 Identities=25% Similarity=0.283 Sum_probs=39.5
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhc
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLG 315 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~ 315 (399)
.++++. .+.+.+-+|+..|+..+.+.+.+++......... ...+++++.+. +++++.+.+.+++.
T Consensus 127 ~~i~l~-~~~e~~~~R~~~R~~~~~~~~~~~i~~~~~~~~~---~~~ad~vId~~~~~~~~~~~i~~~~~ 192 (203)
T 1uf9_A 127 GTLLVA-APLEERVRRVMARSGLSREEVLARERAQMPEEEK---RKRATWVLENTGSLEDLERALKAVLA 192 (203)
T ss_dssp EEEEEC-CCHHHHHHHHHTTTCCTTHHHHHHHTTSCCHHHH---HHHCSEEECCSSHHHHHHHHHHHHHH
T ss_pred EEEEEE-CCHHHHHHHHHHcCCCCHHHHHHHHHHCCChhHH---HHhCCEEEECCCCHHHHHHHHHHHHH
Confidence 455555 4578888999888655556666666542111110 11346777666 68888888877664
No 271
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.22 E-value=0.0021 Score=66.54 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
+|+.++|+||||||||||+++|++...+.++
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 7899999999999999999999998876665
No 272
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.20 E-value=0.0019 Score=63.42 Aligned_cols=64 Identities=6% Similarity=-0.079 Sum_probs=49.4
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
..|++++||||++++|+..+..+.+.+..+. .++|+++|. +. .+++++.+.+|.+...+++.++
T Consensus 291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-----------qt~i~~th~-~~---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 291 GEDPVLLLDDFTAELDPHRRQYLLDLAASVP-----------QAIVTGTEL-AP---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp SSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-----------EEEEEESSC-CT---TCSEEEEEETTEEEECCCTTTS
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHhcC-----------cEEEEEEec-cc---cCCEEEEEECCEEEecCCHHHH
Confidence 6889999999999999988888888776531 277888884 33 5677888888888877766544
No 273
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.19 E-value=0.0025 Score=58.14 Aligned_cols=27 Identities=30% Similarity=0.580 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 478899999999999999999999854
No 274
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.17 E-value=0.0022 Score=59.00 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+.+++|.|||||||||+.+.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998654
No 275
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.13 E-value=0.0049 Score=64.49 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCccccee
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV 165 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i 165 (399)
.|+.++|+||||+|||||+++|++..++..+..+
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~ 92 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDI 92 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeE
Confidence 6789999999999999999999999877653243
No 276
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.12 E-value=0.00017 Score=78.16 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=66.6
Q ss_pred cCCcceeEEEEcCC--ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc--
Q 015825 241 ASPLDAIFIFICPP--SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL-- 316 (399)
Q Consensus 241 ~~~~~~~~ili~~P--~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~-- 316 (399)
+|++..+.+|...| .+.+||||+++||+...+.+.+.++++.+. ..++|+++|+++ .+..+++++.+
T Consensus 385 ~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~--------G~TVIvVeHdl~-~l~~aD~ii~lgp 455 (842)
T 2vf7_A 385 LQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG--------GNSLFVVEHDLD-VIRRADWLVDVGP 455 (842)
T ss_dssp HHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT--------TCEEEEECCCHH-HHTTCSEEEEECS
T ss_pred HHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc--------CCEEEEEcCCHH-HHHhCCEEEEeCC
Confidence 34444555777777 499999999999999999999999887531 348999999998 45678999999
Q ss_pred ----cCCeeeecCCCccccCCC
Q 015825 317 ----DGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 317 ----~~~~~~~~~~~~~~~~~p 334 (399)
.+|.++..+++.++...+
T Consensus 456 gaG~~~G~iv~~g~~~~~~~~~ 477 (842)
T 2vf7_A 456 EAGEKGGEILYSGPPEGLKHVP 477 (842)
T ss_dssp SSGGGCCSEEEEECGGGGGGCT
T ss_pred CcccCCCEEEEecCHHHHHhch
Confidence 688888888877766543
No 277
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.12 E-value=0.002 Score=61.45 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+...++|+|++|||||||++.|.+..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45589999999999999999999864
No 278
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.12 E-value=0.0025 Score=60.73 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
+|++++++|++|+||||++..|++.+.+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~ 127 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 7899999999999999999999998865444
No 279
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.08 E-value=0.0026 Score=55.61 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+++|+|+||||||||+..|++.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 5799999999999999999998764
No 280
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.07 E-value=0.0032 Score=62.66 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhh--hccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLM--KEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~--~~~~~ 159 (399)
.+|+++.|+||||||||||++.|+ ...++
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~ 206 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPL 206 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCG
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCc
Confidence 489999999999999999999654 44544
No 281
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.05 E-value=0.0032 Score=56.41 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
...+.+|+|||||||||++.+|.-
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 456999999999999999999864
No 282
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.96 E-value=0.0024 Score=63.91 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+..++|+|+||||||||+++|++..+
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~~ 182 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTRAHP 182 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCSSCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCCc
Confidence 4678999999999999999999999754
No 283
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.92 E-value=0.00013 Score=79.95 Aligned_cols=85 Identities=8% Similarity=0.033 Sum_probs=66.0
Q ss_pred HcCCcceeEEEEcC--CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc-
Q 015825 240 RASPLDAIFIFICP--PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL- 316 (399)
Q Consensus 240 ~~~~~~~~~ili~~--P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~- 316 (399)
.+|+...+.++... |.+.+||||+++||+...+.+.+.|+++++ . ..++|+++||+++. ..+++++.+
T Consensus 526 EkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~-------G~TVIvVeHdl~~i-~~ADrIi~Lg 596 (993)
T 2ygr_A 526 EAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRD-L-------GNTLIVVEHDEDTI-EHADWIVDIG 596 (993)
T ss_dssp HHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-------TCEEEEECCCHHHH-HTCSEEEEEC
T ss_pred HHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHH-c-------CCEEEEECCCHHHH-HhCCEEEEec
Confidence 34555566677776 589999999999999988999988888753 2 33899999999874 578999998
Q ss_pred -----cCCeeeecCCCccccCC
Q 015825 317 -----DGSIATNHQTSPKGIDL 333 (399)
Q Consensus 317 -----~~~~~~~~~~~~~~~~~ 333 (399)
.+|.++..+++.++...
T Consensus 597 p~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 597 PGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp SSSGGGCCSCCEEECHHHHHHC
T ss_pred CccccCCCEEEEeeCHHHhhhh
Confidence 57888887776665543
No 284
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.92 E-value=0.0041 Score=56.32 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.+|++++|+||||+|||||+..++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999997666543
No 285
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.91 E-value=0.0038 Score=60.47 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=44.8
Q ss_pred EEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
+++.+|++++||||++++|+.....+.+.+..+..+ ..++++++|+. +....+++++.+.
T Consensus 268 ~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~--------~~~vi~~sH~~-~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 268 YLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK--------IPQVILVSHDE-ELKDAADHVIRIS 327 (339)
T ss_dssp HTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG--------SSEEEEEESCG-GGGGGCSEEEEEE
T ss_pred HhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--------CCEEEEEEChH-HHHHhCCEEEEEE
Confidence 556789999999999999998888888887764321 23788999994 4555666655543
No 286
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.89 E-value=0.0029 Score=61.40 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.++.+++++|++|+|||||++.|++.+.+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47889999999999999999999987654
No 287
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.85 E-value=0.0037 Score=55.22 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=38.5
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcce-EEEeCC--CHHHHHHHHHHhh
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFD-HILYND--KLEECYENLKKHL 314 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t-~Viv~h--dleea~~~l~~ii 314 (399)
..+++..| .+++-+|+..++..+.+++.+++..-........ ....+ ++|.|. +++++.+.+.+++
T Consensus 138 ~~i~l~a~-~e~~~~R~~~r~~~~~~~~~~~~~~R~~~~~~~~-~~~ad~~~Id~~~~~~ee~~~~I~~~~ 206 (208)
T 3ake_A 138 HKFYLTAS-PEVRAWRRARERPQAYEEVLRDLLRRDERDKAQS-APAPDALVLDTGGMTLDEVVAWVLAHI 206 (208)
T ss_dssp EEEEEECC-HHHHHHHHHHTSSSCHHHHHHHHHHHHHTC--CC-CCCTTCEEEETTTSCHHHHHHHHHHHH
T ss_pred EEEEEECC-HHHHHHHHHhhcccCHHHHHHHHHHHHHHHhhcc-cCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence 45555544 6777888887765566667666664211100000 22345 666665 7999988887654
No 288
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.81 E-value=0.01 Score=59.77 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=41.5
Q ss_pred hccCCCceEEEEeCCChH-HHHHHH--HHhCC-eEEEeccC-ccC---------------------CCCcEEEEEcCCCC
Q 015825 91 KKGSSSDDCLWFLEVDTP-YVREQK--KVVGA-EVVAWSKG-VIG---------------------NVEKPVVITGPSGV 144 (399)
Q Consensus 91 ~~~~~~~~~i~~~k~D~~-~~~~l~--~~~g~-~v~~~s~~-~~~---------------------~~g~~~~l~GpsG~ 144 (399)
....+.+.+++.||+|.. ...... ..+|. +.+.+|+. ..+ .....++++|.+|+
T Consensus 127 l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~v 206 (456)
T 4dcu_A 127 LYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNV 206 (456)
T ss_dssp HTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTS
T ss_pred HHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCC
Confidence 445688899999999942 111111 22332 45566654 111 12345899999999
Q ss_pred CHHHHHhhhhhccC
Q 015825 145 GKGTLISMLMKEFP 158 (399)
Q Consensus 145 GKSTl~~~L~~~~~ 158 (399)
|||||++.|.+...
T Consensus 207 GKSslin~l~~~~~ 220 (456)
T 4dcu_A 207 GKSSLVNAMLGEER 220 (456)
T ss_dssp SHHHHHHHHHTSTT
T ss_pred CHHHHHHHHhCCCc
Confidence 99999999997643
No 289
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.76 E-value=0.0028 Score=60.14 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++.+++|.|||||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 290
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.70 E-value=0.0049 Score=59.33 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=23.6
Q ss_pred EEEEcCCCCCHHHHHhhhhh-ccCCccc
Q 015825 136 VVITGPSGVGKGTLISMLMK-EFPSMFG 162 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~-~~~~~~g 162 (399)
+.|.||+|+||||+++.|++ +..+..|
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g 66 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVY 66 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 89999999999999999999 5665555
No 291
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.68 E-value=0.005 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 292
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.005 Score=53.48 Aligned_cols=26 Identities=27% Similarity=0.638 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..-.++++|++|||||||++.|.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999999864
No 293
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.67 E-value=0.0051 Score=52.21 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999998754
No 294
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.65 E-value=0.0054 Score=51.26 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 295
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.65 E-value=0.0054 Score=51.32 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 296
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.63 E-value=0.0046 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47999999999999999998754
No 297
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.63 E-value=0.005 Score=57.43 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++|+|++|||||||++.|.+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 298
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.60 E-value=0.0052 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998753
No 299
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.58 E-value=0.0063 Score=56.07 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+++|.|++||||||+.+.|...+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35799999999999999999988543
No 300
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.006 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|++|||||||++.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 301
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.57 E-value=0.0076 Score=51.32 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+...++++|++|||||||++.|.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678999999999999999998753
No 302
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.57 E-value=0.0073 Score=55.67 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
-.++|+|.+|||||||+|.|.+....
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~ 47 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRF 47 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 46899999999999999999986543
No 303
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.56 E-value=0.019 Score=59.31 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+.+++|+|++||||||+.+.|...+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998754
No 304
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.54 E-value=0.0061 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.|.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998753
No 305
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.54 E-value=0.0061 Score=54.25 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
...+++|+|++||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999876
No 306
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.52 E-value=0.0062 Score=51.20 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 307
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.52 E-value=0.0061 Score=51.46 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998654
No 308
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=95.52 E-value=0.00012 Score=62.82 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=45.5
Q ss_pred EEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
+++.+|++++||||++++|+.+...+.+.+..+..+ ..++++++|+. +....+++++.+
T Consensus 77 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--------~~tiiivsH~~-~~~~~~d~ii~l 135 (148)
T 1f2t_B 77 YLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK--------IPQVILVSHDE-ELKDAADHVIRI 135 (148)
T ss_dssp HHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG--------SSEEEEEESCG-GGGGGCSEEEEE
T ss_pred HHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc--------CCEEEEEEChH-HHHHhCCEEEEE
Confidence 566789999999999999998888888888764321 23788999997 455556666665
No 309
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.51 E-value=0.0065 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998753
No 310
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.50 E-value=0.0065 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 311
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.50 E-value=0.0072 Score=55.57 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+.+.|.||+|+||||++++|++...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 35689999999999999999998764
No 312
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.50 E-value=0.0065 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 313
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.50 E-value=0.0059 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 314
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.49 E-value=0.0065 Score=51.78 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 315
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.48 E-value=0.0063 Score=51.81 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 316
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.47 E-value=0.0067 Score=50.93 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|++|||||||++.|.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 317
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.43 E-value=0.0079 Score=51.97 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++++|++|||||||++.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 468999999999999999998865
No 318
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.41 E-value=0.0077 Score=54.09 Aligned_cols=27 Identities=37% Similarity=0.342 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..|+.++|+||||+|||||+..|+...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999999998754
No 319
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.41 E-value=0.0067 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++++|++|||||||++.|.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999875
No 320
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.40 E-value=0.0072 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999864
No 321
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.37 E-value=0.0076 Score=50.66 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|++|||||||++.|.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 322
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.35 E-value=0.0065 Score=52.63 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.-.++++|++|||||||++.|.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 323
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.35 E-value=0.0066 Score=52.73 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..-.++++|++|||||||++.|.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999998753
No 324
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.33 E-value=0.0091 Score=53.48 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+..+.|.||+|+||||+++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999987653
No 325
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.33 E-value=0.0079 Score=51.67 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 326
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.32 E-value=0.009 Score=56.64 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..++.+.|.||+|+||||++++|+....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3578899999999999999999998763
No 327
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.32 E-value=0.008 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998653
No 328
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.31 E-value=0.0067 Score=58.40 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHhhhhhccC
Q 015825 136 VVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+.|.||+|+||||+++++++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999998764
No 329
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.31 E-value=0.0079 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++|+|++|||||||++.|.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 330
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.29 E-value=0.0082 Score=50.65 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.|.+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999997643
No 331
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.29 E-value=0.0083 Score=58.67 Aligned_cols=32 Identities=31% Similarity=0.257 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
.+|+++.|.||+|||||||+..++.......+
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg 90 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGG 90 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 37899999999999999999999887644333
No 332
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.28 E-value=0.0082 Score=52.17 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 333
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.27 E-value=0.0091 Score=55.31 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.++.+++|.|+.||||||+++.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999998763
No 334
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.27 E-value=0.01 Score=50.71 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+..+.|.||+|+||||+++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998765
No 335
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.27 E-value=0.0089 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 336
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.25 E-value=0.0072 Score=52.08 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998764
No 337
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.25 E-value=0.011 Score=56.32 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++|+|.+|||||||+|.|.+..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999999864
No 338
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.24 E-value=0.0097 Score=57.92 Aligned_cols=22 Identities=14% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|++|||||||++.|.|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999994
No 339
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.22 E-value=0.0064 Score=53.62 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++++|++|||||||++.+.+.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 340
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.21 E-value=0.012 Score=56.20 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
--+++|+|.+|||||||+|.|.+..
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478999999999999999999864
No 341
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.21 E-value=0.0083 Score=50.97 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++++|++|||||||++.|.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 342
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.20 E-value=0.0065 Score=52.11 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
+.-.++++|++|||||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999985
No 343
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.20 E-value=0.0082 Score=58.86 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.++|+|++|||||||+|.|.+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 489999999999999999998754
No 344
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.18 E-value=0.0094 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++|+|++|||||||++.+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999888764
No 345
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.18 E-value=0.0098 Score=54.28 Aligned_cols=27 Identities=33% Similarity=0.623 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+|.+++|.|+.||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998764
No 346
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.17 E-value=0.0094 Score=55.96 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++|+|++|||||||++.|.+..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999864
No 347
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.16 E-value=0.01 Score=51.29 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.++|+|++|||||||++.|.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5899999999999999999887654
No 348
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.16 E-value=0.0094 Score=50.82 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 349
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.15 E-value=0.0086 Score=52.30 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++++|++|||||||++.+.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998753
No 350
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.14 E-value=0.0095 Score=51.52 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.|.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 351
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.14 E-value=0.0087 Score=52.65 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|++|||||||++.+.+..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc
Confidence 358999999999999999997653
No 352
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.13 E-value=0.0098 Score=50.49 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.|.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
No 353
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.11 E-value=0.0099 Score=50.85 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.|.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468999999999999999998753
No 354
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.11 E-value=0.01 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 355
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.09 E-value=0.012 Score=55.30 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.++.+.|.||+|+||||+++++++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999998764
No 356
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.07 E-value=0.01 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.682 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|++|+|||||++.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998864
No 357
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.05 E-value=0.0097 Score=51.11 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 358
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.03 E-value=0.012 Score=51.74 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..+.|.||+|+|||||++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998765
No 359
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.03 E-value=0.011 Score=51.92 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++|+|.+|||||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 360
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.02 E-value=0.0098 Score=58.08 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=23.7
Q ss_pred CCcE--EEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKP--VVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~--~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
+|+. ++|+||+||||||+.++|++.+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4555 999999999999999999987643
No 361
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.01 E-value=0.011 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999998865
No 362
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.98 E-value=0.011 Score=51.16 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 363
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.98 E-value=0.011 Score=51.63 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|++|||||||++.|.+..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998653
No 364
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.97 E-value=0.011 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 365
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.96 E-value=0.012 Score=50.78 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.-.++++|++|||||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999998754
No 366
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.96 E-value=0.011 Score=51.14 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 367
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.94 E-value=0.012 Score=50.39 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|++|||||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 368
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.94 E-value=0.012 Score=50.50 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++|+|++|||||||++.|.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45799999999999999999865
No 369
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.92 E-value=0.012 Score=51.53 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|++|||||||++.|.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
No 370
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.91 E-value=0.012 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|++|||||||++.|.+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998643
No 371
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.89 E-value=0.012 Score=54.56 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 372
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.89 E-value=0.012 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.658 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 373
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.88 E-value=0.011 Score=56.15 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSM 160 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~ 160 (399)
++++++++|++|+||||++..|++.+...
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 38899999999999999999999887653
No 374
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.87 E-value=0.016 Score=58.03 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
++++++++|++||||||++..|++.+....+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~ 127 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 6889999999999999999999998866433
No 375
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.85 E-value=0.012 Score=51.11 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++++|++|||||||++.|.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 45899999999999999999874
No 376
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.85 E-value=0.013 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 377
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.83 E-value=0.013 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 378
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.83 E-value=0.011 Score=51.16 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.-.++++|++|||||||++.|.+..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998764
No 379
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.83 E-value=0.013 Score=52.78 Aligned_cols=26 Identities=19% Similarity=0.561 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
....++|+|++|||||||++.|.+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999998753
No 380
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.83 E-value=0.013 Score=52.14 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++|+|++|||||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998764
No 381
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.81 E-value=0.013 Score=50.90 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
....++|+|++|||||||++.|.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999998754
No 382
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.81 E-value=0.012 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++|+|++|||||||++.|.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999854
No 383
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.80 E-value=0.012 Score=51.22 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 384
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.80 E-value=0.012 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 385
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.80 E-value=0.011 Score=55.08 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|.+|+|||||+|.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987653
No 386
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.78 E-value=0.014 Score=53.76 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
...++|+|++|||||||++.|.+..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999999754
No 387
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.77 E-value=0.014 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998643
No 388
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.77 E-value=0.013 Score=51.53 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++|+|++|||||||++.|.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3458999999999999999998754
No 389
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.77 E-value=0.013 Score=50.17 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+..+.|.||+|+||||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999998765
No 390
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.77 E-value=0.013 Score=58.01 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..+..++|+|++|||||||+|+|.+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~ 46 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQ 46 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 356789999999999999999999863
No 391
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.76 E-value=0.014 Score=56.74 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
....++++|++|||||||++.|++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999999865
No 392
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.75 E-value=0.011 Score=50.53 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 393
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.74 E-value=0.014 Score=50.86 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++++|++|||||||++.|.+..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998753
No 394
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.74 E-value=0.014 Score=50.37 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|++|||||||++.|.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 395
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.74 E-value=0.014 Score=50.59 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|++|||||||++.|.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998653
No 396
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.72 E-value=0.0098 Score=60.81 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
-+.|+||+|+|||||+++|++...
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999764
No 397
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.72 E-value=0.015 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.+.+..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 358999999999999999998653
No 398
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.70 E-value=0.013 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 399
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.70 E-value=0.015 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++|+|++|||||||++.|.+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3568999999999999999998754
No 400
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.70 E-value=0.012 Score=57.62 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHhhhhhccC
Q 015825 136 VVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++++|++|+|||||++.|.+...
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEcCCCCCHHHHHHHHhCCCC
Confidence 69999999999999999877643
No 401
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.67 E-value=0.015 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.+.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998754
No 402
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.66 E-value=0.014 Score=51.74 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 403
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.66 E-value=0.021 Score=55.88 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+..++|+|.+|||||||+|+|.+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3568999999999999999999854
No 404
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.66 E-value=0.015 Score=51.13 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++|+|++|||||||++.|.+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998653
No 405
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.65 E-value=0.014 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 406
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.65 E-value=0.012 Score=59.16 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
++.+++++||+||||||++..|+..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999987754
No 407
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.64 E-value=0.015 Score=50.32 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++++|++|||||||++.|.+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998643
No 408
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.62 E-value=0.015 Score=62.85 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
..++.+.|+||||||||||+++|++....
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 47889999999999999999999998754
No 409
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.61 E-value=0.018 Score=53.51 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+..+.|.||+|+||||+++.++....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 567799999999999999999998764
No 410
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.60 E-value=0.016 Score=50.84 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
..|+-+.|.|+||+||||+.-.|..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999988876
No 411
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.60 E-value=0.013 Score=50.46 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.-.++++|++|||||||++.|.+..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999998753
No 412
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.57 E-value=0.016 Score=50.62 Aligned_cols=28 Identities=11% Similarity=0.356 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
+.-.++++|++|||||||++.+.+...+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3456899999999999999999886543
No 413
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.56 E-value=0.017 Score=56.60 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLM 154 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~ 154 (399)
+...+.+|+||||+||||++.+|.
T Consensus 23 f~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 23 FEKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHH
Confidence 345799999999999999999985
No 414
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.56 E-value=0.016 Score=55.80 Aligned_cols=29 Identities=17% Similarity=0.450 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
..+..+.|.||+|+|||||++.+++....
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999987643
No 415
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.54 E-value=0.017 Score=51.13 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.|.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 416
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.54 E-value=0.015 Score=54.65 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
...+.|.||+|+||||++++|+.....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 358999999999999999999987644
No 417
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.54 E-value=0.013 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 418
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.53 E-value=0.018 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 419
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.50 E-value=0.016 Score=51.12 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
...++++|++|||||||++.|.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 420
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.49 E-value=0.017 Score=51.11 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 421
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.48 E-value=0.012 Score=50.47 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=9.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|++|||||||++.|.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 422
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.48 E-value=0.019 Score=55.56 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.+.|.||+|+||||+++.+++....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999987654
No 423
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.48 E-value=0.016 Score=51.40 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.|.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 424
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.45 E-value=0.017 Score=54.98 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+..+.|.||+|+|||||++.++...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999998865
No 425
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.44 E-value=0.018 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++++|++|||||||++.+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4468999999999999999998643
No 426
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.44 E-value=0.022 Score=50.49 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+.|.||+|+||||+++.++....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5889999999999999999987653
No 427
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.44 E-value=0.009 Score=53.19 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
....++|+|++|||||||++.|.+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999999864
No 428
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=94.40 E-value=0.0011 Score=68.09 Aligned_cols=61 Identities=7% Similarity=0.036 Sum_probs=51.2
Q ss_pred EEEcCC--ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 249 IFICPP--SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 249 ili~~P--~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
+++.+| ++++||||++++|+.+...+.+.|..+.+ + .++++++|+++.+. .+++++.+.++
T Consensus 411 ~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~-------~~vi~itH~~~~~~-~~d~~~~~~~~ 473 (517)
T 4ad8_A 411 STVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--T-------RQVLVVTHLAQIAA-RAHHHYKVEKQ 473 (517)
T ss_dssp HHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--H-------SEEEEECCCHHHHH-HSSEEEEEECC
T ss_pred HHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--C-------CEEEEEecCHHHHH-hCCEEEEEecc
Confidence 677888 99999999999999999999999988753 2 28899999987664 68888888654
No 429
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.37 E-value=0.018 Score=51.28 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++++|++|||||||++.|.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 430
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.36 E-value=0.019 Score=51.25 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++|+|.+|||||||++.|+...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998764
No 431
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.33 E-value=0.024 Score=51.74 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
....+.|.||+|+||||+++.++....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456789999999999999999988653
No 432
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.33 E-value=0.017 Score=50.41 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
+.-.++++|++|||||||++.+.+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 4456999999999999999999764
No 433
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.30 E-value=0.02 Score=53.54 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|.+|||||||+|.|.+..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 434
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.28 E-value=0.02 Score=51.39 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++|+|.+|||||||++.+.+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 435
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.28 E-value=0.023 Score=56.11 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-+|+.++|+||+|+|||||++.|++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 489999999999999999999998764
No 436
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.27 E-value=0.02 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|++|||||||++.|.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 437
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.22 E-value=0.021 Score=53.06 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|+|||||++.|.+..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999764
No 438
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.21 E-value=0.024 Score=57.31 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+|+.++|.||||+|||||++.|+....
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 4899999999999999999999987654
No 439
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.19 E-value=0.02 Score=56.13 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 440
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.18 E-value=0.021 Score=50.17 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.+.+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998754
No 441
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.16 E-value=0.022 Score=53.88 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.|.|..
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 469999999999999999999864
No 442
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.15 E-value=0.03 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|.+|+|||||++.|.+..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 443
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.07 E-value=0.027 Score=54.79 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+|+++.|.||+|+|||||+..++...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999988887654
No 444
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.06 E-value=0.029 Score=46.98 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+..+.|.||+|+|||++++.|....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999999998754
No 445
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.025 Score=50.57 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 446
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.03 E-value=0.018 Score=49.72 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.-.++++|++|||||||++.|.+.
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999753
No 447
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.01 E-value=0.079 Score=50.70 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
..|+-+.|.|+||+||||+.-.|..
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4688899999999999999988765
No 448
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.99 E-value=0.022 Score=53.29 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++++|.+|||||||++.|.+..
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999864
No 449
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.97 E-value=0.025 Score=49.81 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58999999999999999998653
No 450
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.96 E-value=0.027 Score=55.27 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.+..++++||+|+||||+++.|+.....
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5667899999999999999999876544
No 451
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.88 E-value=0.027 Score=50.13 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.-.++|+|++|||||||++.|.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999875
No 452
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.88 E-value=0.032 Score=50.60 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=21.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
..|+.+++.||+||||||++..++-
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 3689999999999999998876643
No 453
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.84 E-value=0.026 Score=49.74 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.-.++++|++|||||||++.+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998864
No 454
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.84 E-value=0.012 Score=51.36 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=4.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++|+|++|||||||++.|.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999875
No 455
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.76 E-value=0.029 Score=52.71 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+..+.|.||+|+|||++++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999888765
No 456
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.75 E-value=0.028 Score=49.56 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|+|||||++.+.+..
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998643
No 457
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.63 E-value=0.033 Score=54.00 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+..+.|.||+|+|||+++++|+....
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999998763
No 458
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.62 E-value=0.036 Score=48.44 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+.|.||+|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998754
No 459
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.52 E-value=0.028 Score=49.98 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhh
Q 015825 134 KPVVITGPSGVGKGTLISMLM 154 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~ 154 (399)
-.++++|++|||||||++.+.
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999954
No 460
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.47 E-value=0.034 Score=58.27 Aligned_cols=27 Identities=33% Similarity=0.277 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+|.++.|+|++||||||+.+.|...+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999998865
No 461
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.45 E-value=0.035 Score=46.37 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+..+.|.||+|+|||++++.|....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhC
Confidence 34678999999999999999998754
No 462
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.43 E-value=0.041 Score=51.90 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
....+.|.||+|+|||+|++.|+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567788999999999999999876
No 463
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.42 E-value=0.014 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 464
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.41 E-value=0.034 Score=55.76 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+..+.|.||+|+|||||+++|+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998865
No 465
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.37 E-value=0.044 Score=52.51 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.+.+.|.||+|+|||+|++.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 45789999999999999999999876
No 466
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.33 E-value=0.03 Score=57.27 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.|..+.|+|.|||||||+.+.|+..+.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998775
No 467
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.29 E-value=0.042 Score=51.29 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+..+.|.||+|+|||++++.++....
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456889999999999999999988763
No 468
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=93.27 E-value=0.034 Score=58.82 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+++.++|+|++|+|||||++.|++...
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 4678999999999999999999997654
No 469
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.27 E-value=0.034 Score=55.88 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-..++|+|.+|||||||+|.|.+..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3579999999999999999999864
No 470
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.21 E-value=0.038 Score=53.24 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+..+.|.||+|+|||++++.++....
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999998764
No 471
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.17 E-value=0.038 Score=55.55 Aligned_cols=29 Identities=10% Similarity=0.271 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.+|++++|.|++|+|||||+..++.....
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999886543
No 472
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.16 E-value=0.046 Score=55.49 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+-+.|.||+|+|||||++++++...
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 34588999999999999999998653
No 473
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.16 E-value=0.047 Score=51.86 Aligned_cols=26 Identities=23% Similarity=0.586 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+..++|+|++|||||||++.+.+...
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~ 28 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYS 28 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 34689999999999999999887643
No 474
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.14 E-value=0.05 Score=47.75 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
+|++.++.||.|+||||++-.++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999744443
No 475
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.13 E-value=0.041 Score=55.01 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.++|+|.+|||||||+|.|.+...
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~~ 28 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGERI 28 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998643
No 476
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.07 E-value=0.048 Score=52.77 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.+|+++.|.||+|+|||||+..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999998875
No 477
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.06 E-value=0.023 Score=52.36 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+.+.|.||+|+||||++++|+....
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4478999999999999999988653
No 478
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.04 E-value=0.039 Score=53.06 Aligned_cols=26 Identities=15% Similarity=0.447 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+..+.|.||+|+||||+++.+....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998765
No 479
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.01 E-value=0.042 Score=50.81 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
....+.|.||+|+|||++++.++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34678999999999999999998864
No 480
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=92.96 E-value=0.042 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|.++||||||+|.|.+..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999864
No 481
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.89 E-value=0.052 Score=52.68 Aligned_cols=26 Identities=42% Similarity=0.460 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
...+++|+|++|+|||||++.|+..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998764
No 482
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.86 E-value=0.057 Score=51.44 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++.+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
No 483
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=92.86 E-value=0.045 Score=55.55 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+-.++|+|++|||||||+|.|.+..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4459999999999999999999864
No 484
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=92.85 E-value=0.019 Score=58.73 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
+| +.+|+|+||||||||+.+|...
T Consensus 60 ~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 60 GG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred CC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 44 9999999999999999999655
No 485
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.84 E-value=0.046 Score=54.92 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++.+++++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999987654
No 486
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.82 E-value=0.059 Score=51.37 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..+.+.|.||+|+|||+++++++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45679999999999999999998865
No 487
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.94 E-value=0.02 Score=50.26 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++++|++|||||||++.+.+.
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 45899999999999999998754
No 488
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.76 E-value=0.039 Score=55.33 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+++|+|++||||||++..|+..+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998764
No 489
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.75 E-value=0.039 Score=55.76 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.|-.++|+|++|||||||+|.|.+..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34469999999999999999999864
No 490
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.73 E-value=0.061 Score=52.20 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+.+.|.||+|+||||++++|+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999988653
No 491
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.70 E-value=0.048 Score=56.62 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+.++.|.|++||||||+.+.|...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998865
No 492
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.68 E-value=0.052 Score=51.78 Aligned_cols=22 Identities=41% Similarity=0.697 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHhhhhhcc
Q 015825 136 VVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.|.||+|+||||+++.+++.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999875
No 493
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.65 E-value=0.057 Score=52.54 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
....+.|.||+|+||||+++.|+....
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999998763
No 494
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.52 E-value=0.062 Score=51.41 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.+|+++.|.||+|+||||++..++..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 47999999999999999999998865
No 495
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=92.50 E-value=0.0017 Score=62.88 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLM 154 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~ 154 (399)
...+.+|+||||+||||++.+|.
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999874
No 496
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.46 E-value=0.06 Score=53.84 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|.+++|||||+|.|.+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 497
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=92.42 E-value=0.052 Score=52.59 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|.+|||||||++.|.|..
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999864
No 498
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=92.42 E-value=0.074 Score=55.38 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++++|++++|||||+|.|.|..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 468999999999999999999875
No 499
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.29 E-value=0.078 Score=48.72 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+..+.|.||+|+|||++++.|.....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 46789999999999999999987654
No 500
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.23 E-value=0.072 Score=50.73 Aligned_cols=26 Identities=31% Similarity=0.647 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
...+.|.||+|+||||+++.++....
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999987754
Done!