RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015825
(399 letters)
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 304 bits (782), Expect = e-104
Identities = 89/179 (49%), Positives = 125/179 (69%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+PVV++GPSG GK TL+ L +E S+FGFSVSHTTR PR E+DG Y+F R +M++
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I G F+E A GNLYGTS EAV AV + C+LD+D+QG RS++ + L I+IF+ P
Sbjct: 65 IAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQP 124
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
PS++ LE+RLR R TETE+ + KRL A+ +++ K G+FD ++ ND L++ Y LK+
Sbjct: 125 PSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQ 183
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 296 bits (761), Expect = e-101
Identities = 87/180 (48%), Positives = 124/180 (68%), Gaps = 2/180 (1%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+P+VI+GPSG GK TL+ L E+P FGFSVS TTR PRA E +G Y+F +
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRA-SPLDAIFIFIC 252
IK+ +F+E+A GN YG++V +V+ V+ +GK CILDID+QG +SV+A L+A F+FI
Sbjct: 62 IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 121
Query: 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
PPS+E+L++RL RGTETE+ I KRL A+ E+ + +G D ++ ND L++ Y+ LK
Sbjct: 122 PPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAE-TGAHDKVIVNDDLDKAYKELKD 180
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 292 bits (751), Expect = 3e-99
Identities = 70/181 (38%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
P+V+ GPSGVGKGTLI ++ EFPS F FS+S TTR R E +GV Y+F ++ E+
Sbjct: 13 PPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK 72
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRAS--PLDAIFIFI 251
+K+G+FLEF N YGT + GK C+ ++++ G + ++ S D I+IF+
Sbjct: 73 LKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFV 132
Query: 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311
PPS++ L RL+ R TE ++I KR++ E+ + G F++ + ND L Y L+
Sbjct: 133 KPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEADKVG-FNYFIVNDDLARTYAELR 191
Query: 312 K 312
+
Sbjct: 192 E 192
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 292 bits (751), Expect = 5e-99
Identities = 71/181 (39%), Positives = 106/181 (58%), Gaps = 3/181 (1%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
P+VI GPSGVGKGTLI L+ EFP+ F FSVS TTR R EK+GV Y+F ++++ E
Sbjct: 24 YPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRAS--PLDAIFIFI 251
+K+ FLE+ + N YGT + + K C+ ++++ G + ++ S +A++IFI
Sbjct: 84 LKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFI 143
Query: 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311
PPS + L RL R TE ++QI KR+ E+ + F+ + ND L Y+ LK
Sbjct: 144 KPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLN-FNLSIINDDLTLTYQQLK 202
Query: 312 K 312
Sbjct: 203 N 203
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 288 bits (739), Expect = 2e-97
Identities = 71/179 (39%), Positives = 111/179 (62%), Gaps = 3/179 (1%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+V++GPSGVGKGT+ + ++ + + +S+S TTR R E DGV Y F R E
Sbjct: 7 LLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEAL 66
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
IKD +F+E+A GN YGT V+ V+ D G L+I+V+GA+ VR DA+FIF+ P
Sbjct: 67 IKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAP 126
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
PS+E L ERL RGTE++++I R+ A++E++ +D+++ ND++E ++
Sbjct: 127 PSLEHLRERLVGRGTESDEKIQSRINEARKEVEMMNL---YDYVVVNDEVELAKNRIQC 182
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 286 bits (735), Expect = 8e-97
Identities = 78/179 (43%), Positives = 113/179 (63%), Gaps = 3/179 (1%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+V++GPSGVGKGT+ + K+ + F +S+S TTR PR E+DGV Y+F R V E+A
Sbjct: 9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQA 68
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
IKDGK LE+A GN YGT +E VE AG L+I+VQGA VR + + IFIF+ P
Sbjct: 69 IKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTP 128
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
P + EL+ R+ RGTE+ + + +R+ AK+EI+ S +D+ + ND + + +K
Sbjct: 129 PDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMAS---YDYAVVNDVVANAVQKIKG 184
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 280 bits (718), Expect = 3e-94
Identities = 75/197 (38%), Positives = 116/197 (58%), Gaps = 6/197 (3%)
Query: 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEK 177
G + ++G V + VV++GPS VGK T++ L + P+ FSVS TTRAPR E
Sbjct: 5 GPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEV 63
Query: 178 DGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY--GTSVEAVEAVADAGKRCILDIDVQG 235
DGV YHF + + ++ I G+ LE+A +HG L+ GT + V A A G ++++D+ G
Sbjct: 64 DGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAG 123
Query: 236 ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFD 295
AR+++ + +A+ +F+ PPS ++L+ RL RGTET D I +RL A+ E+ G FD
Sbjct: 124 ARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAA---QGDFD 180
Query: 296 HILYNDKLEECYENLKK 312
++ N +LE L
Sbjct: 181 KVVVNRRLESACAELVS 197
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 265 bits (681), Expect = 6e-89
Identities = 44/179 (24%), Positives = 94/179 (52%), Gaps = 10/179 (5%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
K +V+ G GVG+ + + L+ + P F + + HTTR P+ E++G +Y+F M +
Sbjct: 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD 65
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I + ++LE+ S +YGT +E + + + G ILD++ Q + +R + +FI
Sbjct: 66 ISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAA 125
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
P++ G ++ + +RL+ + +++ + FD + N++++E +L++
Sbjct: 126 PTIT--------PGLNEDESL-QRLQKESDILQR-TYAHYFDLTIINNEIDETIRHLEE 174
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 265 bits (681), Expect = 8e-89
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
K +V+ G SGVG+ + + L+ + P F + V +TTR PR E+DG YHF M +
Sbjct: 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRN 79
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I +FLEF S GN++GT E V + K ILDI+ Q + VR + L +FI P
Sbjct: 80 ISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAP 139
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
E L+ ++ + FD L N+ ++E + L++
Sbjct: 140 TDQGTQTEALQQLQKDS----------EAIRSQYAHY---FDLSLVNNGVDETLKKLQE 185
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 250 bits (640), Expect = 3e-82
Identities = 74/178 (41%), Positives = 96/178 (53%), Gaps = 4/178 (2%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSM-FGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAI 194
+++ PSG GK +LI L+K P SVSHTTR PR E G HY F ++ I
Sbjct: 19 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 78
Query: 195 KDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPP 254
FLE A V GN YGTS EA+E V G LDID QGA+ +R A IFI PP
Sbjct: 79 SRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPP 138
Query: 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
S EL+ RLR RG ++E+ I KR+ A E+ +D+++ ND + +LK
Sbjct: 139 SKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAE---YDYLIVNDDFDTALTDLKT 193
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 247 bits (633), Expect = 2e-81
Identities = 66/177 (37%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+I+ PSG GK +L+ L+K S+SHTTR R +++GV Y F + + + +K
Sbjct: 10 FIISAPSGAGKTSLVRALVKALAE-IKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK 68
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
+G FLE A+++ YGT + V AG+ +L+ID QGAR +R A+ IFI PPS
Sbjct: 69 EGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPS 128
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
+E L ERL R + I +RL A+EE+ K FD+++ ND ++ +NL
Sbjct: 129 IEALRERLIKRRQDDTAIIEQRLALAREEMAHYKE---FDYLVVNDNFDQAVQNLIH 182
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 245 bits (629), Expect = 2e-80
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 4/178 (2%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+V++ PSG GK T+ + L+++ + SVS TTRA R EK+G Y+F +R +
Sbjct: 30 LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRAS-PLDAIFIFICPP 254
+G+ +E A V GN YG + +E D G +L ID QGA + IFI PP
Sbjct: 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPP 149
Query: 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
SMEEL RL R + + + RL+ A EI ++ +D+++ N+ +EE + +
Sbjct: 150 SMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEA---YDYVIVNEDIEETADRISN 204
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 247 bits (632), Expect = 4e-80
Identities = 66/196 (33%), Positives = 98/196 (50%), Gaps = 13/196 (6%)
Query: 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDG 179
V S N +PV+I GP K + L+ E+P FG V HTTR R E DG
Sbjct: 91 AVQRLSI----NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDG 143
Query: 180 VHYHF-TERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARS 238
YHF + R ME+ I++ F+E + NLYGTSV +V VA+ GK CILD+ +
Sbjct: 144 RDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKR 203
Query: 239 VRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHIL 298
++ + L + +FI P S++ + E R E + +R K E + G+ F ++
Sbjct: 204 LQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERA--IKMEQEFGE---YFTGVV 258
Query: 299 YNDKLEECYENLKKHL 314
D +EE Y +K +
Sbjct: 259 QGDTIEEIYSKVKSMI 274
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 240 bits (613), Expect = 3e-77
Identities = 71/183 (38%), Positives = 97/183 (53%), Gaps = 11/183 (6%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHF-TERSVMEK 192
+P++I GP+ K L+ EFP FG V HTTR R E DG YHF + R MEK
Sbjct: 106 RPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEK 162
Query: 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFIC 252
I+ KF+E + +LYGTSV++V VA+ GK CILD+ R ++A+ L I IFI
Sbjct: 163 DIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIR 222
Query: 253 PPSMEELEERLRARGTETEDQILKRLRNA-KEEIKQGKSSGIFDHILYNDKLEECYENLK 311
P S+E + E TE+Q K A K E + + F I+ D EE Y +K
Sbjct: 223 PRSLENVLEI---NKRITEEQARKAFDRATKLEQEFTE---CFSAIVEGDSFEEIYHKVK 276
Query: 312 KHL 314
+ +
Sbjct: 277 RVI 279
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 192 bits (487), Expect = 7e-55
Identities = 70/182 (38%), Positives = 98/182 (53%), Gaps = 9/182 (4%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHF-TERSVMEK 192
+P++I GP K L+ EFP FG V HTTR R E DG YHF + R MEK
Sbjct: 532 RPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEK 588
Query: 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFIC 252
I+ KF+E + +LYGTSV++V VA+ GK CILD+ R ++A+ L I IFI
Sbjct: 589 DIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIR 648
Query: 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
P S+E + E TE+Q K A +++Q + + F I+ D EE Y +K+
Sbjct: 649 PRSLENVLEI---NKRITEEQARKAFDRA-TKLEQ-EFTECFSAIVEGDSFEEIYHKVKR 703
Query: 313 HL 314
+
Sbjct: 704 VI 705
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 163 bits (413), Expect = 4e-47
Identities = 47/268 (17%), Positives = 100/268 (37%), Gaps = 27/268 (10%)
Query: 53 IYDRSTGNWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVRE 112
+ ++ +W I + S V L + + + + + + L E P+ ++
Sbjct: 72 VKEKFNNDWWIGRLVKEGCEIGFIPSPVKL--ENMRLQHEQRAKEFKLHSKEKRMPFFKK 129
Query: 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVG---KGTLISMLMKEFPSMFGFSVSHTT 169
+ +VV +PVV+ GPS G + L F +S T
Sbjct: 130 TEHTPPYDVVPS--------MRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT- 180
Query: 170 RAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL--YGTSVEAVEAVADAGKRC 227
R +RS + +E ++ +L + +E + +A +
Sbjct: 181 RVTA-------DISLAKRS-VLNNPSKHAIIERSNTRSSLAEVQSEIERIFELARTLQLV 232
Query: 228 ILDID-VQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK 286
+LD D + + + L I +++ S + L+ +++RG + ++ A +
Sbjct: 233 VLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKL-- 290
Query: 287 QGKSSGIFDHILYNDKLEECYENLKKHL 314
+FD IL ++LE+ E+L +L
Sbjct: 291 AQCPPELFDVILDENQLEDACEHLADYL 318
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 106 bits (265), Expect = 2e-25
Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 35/184 (19%)
Query: 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190
+PV I GP L +E P ++ + S PR D
Sbjct: 222 GFLRPVTIFGPI---ADVAREKLAREEPDIYQIAKSE----PRDAGTDQRSSGII----- 269
Query: 191 EKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIF 250
+ ++ + D K +LD+ + + I +F
Sbjct: 270 ----------------------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVF 307
Query: 251 ICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENL 310
+ P S + ++ E+ ++L ++++ I N + Y L
Sbjct: 308 LNPDSKQGVKTMRMRLCPESRKS-ARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGAL 366
Query: 311 KKHL 314
K+ +
Sbjct: 367 KEAI 370
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 102 bits (256), Expect = 6e-25
Identities = 29/180 (16%), Positives = 52/180 (28%), Gaps = 39/180 (21%)
Query: 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAI 194
PVVI GP + L E P F +R +
Sbjct: 147 PVVILGPV---ADIAMQKLTAEMPDQFE-IAETVSRTDSPSK------------------ 184
Query: 195 KDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPP 254
++ V +A+ K +LD+ + I +F P
Sbjct: 185 ----------------IIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPE 228
Query: 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHL 314
S L+ + + +RL +++++ S I N + Y+ LK +
Sbjct: 229 SRPALKALRQWLAPASRRS-TRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAII 287
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 98.0 bits (243), Expect = 9e-23
Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 35/181 (19%)
Query: 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190
+PV I GP L +E P ++ + S PR D
Sbjct: 230 GFLRPVTIFGP---IADVAREKLAREEPDIYQIAKSE----PRDAGTDQRSSGII----- 277
Query: 191 EKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIF 250
+ ++ + D K +LD+ + + I +F
Sbjct: 278 ----------------------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVF 315
Query: 251 ICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENL 310
+ P S + ++ E+ ++L ++++ I N + Y L
Sbjct: 316 LNPDSKQGVKTMRMRLCPESRKS-ARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGAL 374
Query: 311 K 311
K
Sbjct: 375 K 375
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.5 bits (156), Expect = 3e-11
Identities = 58/459 (12%), Positives = 122/459 (26%), Gaps = 147/459 (32%)
Query: 5 PAFIVD-NLQNGNGFSNGFSLKSRDCETTTVIGD---KTYVIAGSDESIGVKIYDRSTG- 59
AF+ + + ++ L + + + D T + + S ++ +
Sbjct: 27 DAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 60 ------NWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLW-FLEVDTPY--V 110
+L+ ++ E R ++ + D L+ +V Y
Sbjct: 86 VLRINYKFLMSPIK-TEQR------------QPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP--SMFGFSVSHT 168
R Q ++ + K V+I G G GK + + + F
Sbjct: 133 RLQPY---LKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF----- 182
Query: 169 TRAPRAMEKDGVHY-----HFTERSVMEKAIK-----DGKFLEFASVHGNLYGTSVEAVE 218
+ + + +V+E K D + + N+
Sbjct: 183 ----------KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 219 AVAD-----AGKRC--ILDIDVQGARSVRASPLDAIFIFIC------------------- 252
+ + C +L +VQ A++ A F C
Sbjct: 233 ELRRLLKSKPYENCLLVLL-NVQNAKAWNA------FNLSCKILLTTRFKQVTDFLSAAT 285
Query: 253 --PPSMEELEERLRARGTETEDQILKRLRNAK----EEIKQG---KSSGI---------- 293
S++ L E + +LK L E+ + S I
Sbjct: 286 TTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 294 ---FDHILYNDKLEE----CYENLK----KHLGLDGSIATNHQTSPKGIDLPA------- 335
+ H+ DKL L+ + + S+ P +P
Sbjct: 344 WDNWKHVNC-DKLTTIIESSLNVLEPAEYRKMFDRLSVF------PPSAHIPTILLSLIW 396
Query: 336 --------DHSVSKVANKVIIKCGAAEGKASKNLMVLDV 366
V+K+ +++ E S + L++
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Score = 42.1 bits (98), Expect = 3e-04
Identities = 41/312 (13%), Positives = 83/312 (26%), Gaps = 120/312 (38%)
Query: 8 IVDNLQNGNGFSNGFSLKSRDCET--TTVIGDKTYVIAGSDESIGVKIYDRSTGNWLIPA 65
++ N+QN + N F+L C+ TT K V D S L
Sbjct: 249 VLLNVQNAKAW-NAFNLS---CKILLTT--RFKQ-VT---DFLSAATTTHIS----LDHH 294
Query: 66 VRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKVVGAEVVAWS 125
+ P E + L++K L P RE
Sbjct: 295 SMTLTPD-----------EVKSLLLKYLDCRPQDL-------P--REVLTT--------- 325
Query: 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFT 185
P ++ +I+ +++ + + D +
Sbjct: 326 --------NPRRLS---------IIAESIRDGLATW----------------DNWKHVNC 352
Query: 186 ERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLD 245
++ + I+ +S+ +E ++ +
Sbjct: 353 DK--LTTIIE----------------SSLNVLEP--AEYRKMFDRL-------------- 378
Query: 246 AIFIFICPPS---MEELEERLRARGTETEDQ-ILKRLRNAKEEIKQGKSSGIFDHILYND 301
++F PPS L + +++ ++ +L KQ K S I +Y +
Sbjct: 379 SVF----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 302 KLEECYENLKKH 313
+ H
Sbjct: 435 LKVKLENEYALH 446
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 48.0 bits (114), Expect = 8e-07
Identities = 31/206 (15%), Positives = 59/206 (28%), Gaps = 54/206 (26%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+ITGP+GVGK T L + + +E D +++
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDN------------SAYIEGDIINHMVVGGYRPPWESD 52
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDV---------QGARSVRASPLDA 246
+ L + ++ + A +LD Q ++
Sbjct: 53 ELLALTWKNI--------TDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIR 104
Query: 247 IFIFICPPSMEELEERLRARGTE--TEDQILKRLR---------------------NAKE 283
I EEL R R + ++ L+ + N +
Sbjct: 105 FIILWTNR--EELLRRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLND 162
Query: 284 EIKQGKSSGIFDHILYNDKLEECYEN 309
+K K++ F + D LE + +
Sbjct: 163 IVKNLKTNPRFIFCMAGDPLEHHHHH 188
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 47.8 bits (113), Expect = 8e-07
Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 23/142 (16%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMF----GFSVSHTTRAPRAMEKDGVHYHFTERSVME 191
+++ G S GK ++ L P + S+ + G+ +
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFD-------- 57
Query: 192 KAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRA------SPLD 245
DG L G E V A+A AG R I+D G + + LD
Sbjct: 58 ---ADGGV-SIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLD 113
Query: 246 AIFIFICPPSMEELEERLRARG 267
+++ + E R ARG
Sbjct: 114 VLWVGVRCD-GAVAEGRETARG 134
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 44.7 bits (105), Expect = 1e-05
Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 33/184 (17%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
++ITG G GK ++ M+ E V E + TE K
Sbjct: 13 ILITGTPGTGKTSMAEMIAAELDGFQHLEVGKL-----VKENHFYTEYDTELDTHIIEEK 67
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
D ++ +E + + + +D + + +
Sbjct: 68 DED-------------RLLDFMEPIMVSRGNHV--VDYHSSELFPERWFHMVVVLHTST- 111
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFD-------HILYNDKLEECYE 308
E L ERL R KR N + EI+ D + ND LE+
Sbjct: 112 -EVLFERLTKRQYSEA----KRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAA 166
Query: 309 NLKK 312
+++
Sbjct: 167 TVEE 170
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 43.2 bits (101), Expect = 4e-05
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 20/136 (14%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
++++G G GK T+ L G H D + ++
Sbjct: 12 LLLSGHPGSGKSTIAEALANL----PGVPKVH-------FHSDDL------WGYIKHGRI 54
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGA--RSVRASPLDAIFIFICP 253
D + + + + + A G ILD V+ + A +I +
Sbjct: 55 DPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRT 114
Query: 254 PSMEELEERLRARGTE 269
+ E ER RG +
Sbjct: 115 TA-AEAIERCLDRGGD 129
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 44.4 bits (104), Expect = 5e-05
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 27 RDCETTTVIG--DKTYVIAGSDESIG----VKIYDRSTGNWLIPAVRGIEPRPCKGHSAV 80
R C T T I ++ +I G I+D T W + HSA
Sbjct: 440 RMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL---SHTRFRHSAC 496
Query: 81 LLNEDRILVIKKGSSSDDCLWFLEVDT 107
L + +L++ G + + V
Sbjct: 497 SLPDGNVLIL-GGVTEGPAMLLYNVTE 522
Score = 40.9 bits (95), Expect = 6e-04
Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 11/79 (13%)
Query: 23 SLKSRDCETTTVIGDKTYVIAG-------SDESIGVKIYDRSTGNWL---IPAVRGIEPR 72
L R I + +I G D + + D + I +
Sbjct: 593 PLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHS 652
Query: 73 PCK-GHSAVLLNEDRILVI 90
G S V + I +I
Sbjct: 653 LMLAGFSLVSTSMGTIHII 671
Score = 40.5 bits (94), Expect = 9e-04
Identities = 6/86 (6%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 31 TTTVIGD-KTYVIAGSDESIGVKIYDRSTGNWLIPAVRGIEPRPCKGHSAVLLNE--DRI 87
+ + D ++ G E + +Y+ + + + + + + + +
Sbjct: 494 SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553
Query: 88 LVI-----KKGSSSDD-CLWFLEVDT 107
+++ + + SD ++ + +
Sbjct: 554 IILGGGFMDQTTVSDKAIIFKYDAEN 579
Score = 34.7 bits (79), Expect = 0.063
Identities = 7/91 (7%), Positives = 27/91 (29%), Gaps = 14/91 (15%)
Query: 31 TTTVIGDKTYVIAG-------SDESIGVKIYDRSTGNWLIPAVRGIEPRPCK--GHSAVL 81
+ + ++ G + + YD I ++ ++ + G
Sbjct: 545 EFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY 604
Query: 82 LNEDRILVI-----KKGSSSDDCLWFLEVDT 107
+ ++L++ + + L+ +
Sbjct: 605 ITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635
Score = 32.4 bits (73), Expect = 0.29
Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 11/91 (12%)
Query: 27 RDCETTTVIGDKTYVIAGSDESIG--VKIYDRSTGNWLIPAVR---GIEPRPCKGHSAVL 81
R V G+ + + GS+ + + + P H+
Sbjct: 388 RKFGDVDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTT 447
Query: 82 LNEDRILVI-----KKGSSSDDCLWFLEVDT 107
++ + L++ D W ++ T
Sbjct: 448 ISRNNQLLLIGGRKAPHQGLSDN-WIFDMKT 477
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 41.4 bits (97), Expect = 1e-04
Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 34/190 (17%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
++ITG G GK +L + G V + R +A
Sbjct: 4 ILITGMPGSGKSEFAKLLKE-----RGAKVIVMSDVVRKR-------------YSIEAKP 45
Query: 196 DGKFLEFASVHGNLYGTSVEA---VEAVADAGKRCILDIDVQGARSV------RASPLDA 246
+ ++FA +YG V A VE + + ++ D G RS+ + D+
Sbjct: 46 GERLMDFAKRLREIYGDGVVARLCVEELGTSNHDLVV-FD--GVRSLAEVEEFKRLLGDS 102
Query: 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRN-AKEEIKQGKSSGI--FDHILYNDK- 302
++I + +R+ R + + + L +EE+K G I D+I+ ND
Sbjct: 103 VYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMADYIITNDSN 162
Query: 303 LEECYENLKK 312
EE ++
Sbjct: 163 YEEFKRRCEE 172
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 40.8 bits (95), Expect = 2e-04
Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 32/181 (17%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+++TG GVGK TL L + G+ Y E+ +
Sbjct: 14 ILLTGTPGVGKTTLGKELASKS---------------------GLKYINVGDLAREEQLY 52
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
DG E+ + V+ ++ G +D G +F+
Sbjct: 53 DGYDEEYDCPILDE-DRVVDELDNQMREGGVI---VDYHGCDFFPERWFHIVFVLRTDT- 107
Query: 256 MEELEERLRARGTE----TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311
L ERL RG T++ + + EE I H L ++K EE N+
Sbjct: 108 -NVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEI-VHQLPSNKPEELENNVD 165
Query: 312 K 312
+
Sbjct: 166 Q 166
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 40.3 bits (94), Expect = 3e-04
Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 25/142 (17%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+++TG GK TL L P + KD +
Sbjct: 8 IIVTGHPATGKTTLSQALATGLR------------LPL-LSKDAFKEVMFDGLGWSDREW 54
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILD----IDVQGAR-SVRASPLDAIFIF 250
+ A + +G+ I++ +D+ R + I
Sbjct: 55 SRRVGATA------IMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQ 108
Query: 251 I-CPPSMEELEERLRARGTETE 271
I C S + L ER+ +R +
Sbjct: 109 IRCVASGDVLVERILSRIAQGA 130
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 41.8 bits (98), Expect = 3e-04
Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 50/181 (27%)
Query: 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEK---DGVHYHFTE 186
V + ++ GP G+GK T ++ +E G+ + +E+ D
Sbjct: 74 SGVFRAAMLYGPPGIGKTTAAHLVAQE----LGYDI---------LEQNASD-------V 113
Query: 187 RS--VMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRC-ILD-ID--VQGARS-V 239
RS ++ +K+ L+ SV G + I+D +D G R V
Sbjct: 114 RSKTLLNAGVKN--ALDNMSVVGYFKHNE---EAQNLNGKHFVIIMDEVDGMSGGDRGGV 168
Query: 240 RA-----SPLDAIFIFIC----PPSMEELEER---LRARGTETEDQILKRLRN--AKEEI 285
I IC P M + ++ R + I RL +E+
Sbjct: 169 GQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRP-DANSIKSRLMTIAIREKF 227
Query: 286 K 286
K
Sbjct: 228 K 228
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto-
gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus
tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Length = 311
Score = 41.0 bits (97), Expect = 3e-04
Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 12/116 (10%)
Query: 183 HFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDV-------QG 235
+ V E+ +K + + + + T+ EAV + D ++ +
Sbjct: 115 KLSPEDVDEEYVKSADLVHSSGITLAISSTAKEAVYKAFEIASNRSFDTNIRLKLWSAEE 174
Query: 236 ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE--IKQGK 289
A+ L + ++ + G D+ K + E +K G
Sbjct: 175 AKREILKLLSKFHLKFLITDTDDSK---IILGESDPDKAAKAFSDYAEIIVMKLGP 227
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 37.2 bits (86), Expect = 0.003
Identities = 29/158 (18%), Positives = 44/158 (27%), Gaps = 29/158 (18%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMF-------GFSVSHTTRAPRAMEKDGVHYHFTERS 188
+ I GP GVGK L + P F G ++ T D +
Sbjct: 8 IWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSG---DPQEHPMWIPL 64
Query: 189 VMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIF 248
+++ G + V A R ++ SV L A
Sbjct: 65 MLDAL---------QYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIA-- 113
Query: 249 IFICPPSMEELEERLRARG--TETEDQILKRLRNAKEE 284
+ + ERLR G + RL + E
Sbjct: 114 ------PLNVVLERLRRDGQPQVNVGTVEDRLNELRGE 145
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.004
Identities = 49/260 (18%), Positives = 75/260 (28%), Gaps = 100/260 (38%)
Query: 155 KEFPSMFGFSVSHTTR-APRAMEKDGVHYHFT--------ER--SVMEKAIKDGK----- 198
F +GFS+ P + HF E +++ + I DGK
Sbjct: 1651 NHFKDTYGFSILDIVINNPVNLT-----IHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 199 -FLE---------FASVHGNLYGT----------SVEAVEAVADAGKRCILDIDVQGARS 238
F E F S G L T A E + G
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG-------------- 1751
Query: 239 VRASPLDAIF----------------IFICPPSMEELEERLRARGTETEDQILKRLRNAK 282
P DA F + S+E L E + RG ++ A
Sbjct: 1752 --LIPADATFAGHSLGEYAALASLADVM----SIESLVEVVFYRG--------MTMQVAV 1797
Query: 283 EEIKQGKSS--------GIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK----- 329
+ G+S+ G + L+ E + K G I N+ +
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV-NYNVENQQYVAA 1856
Query: 330 GIDLPADHSVSKVANKVIIK 349
G DL A +V+ V N + ++
Sbjct: 1857 G-DLRALDTVTNVLNFIKLQ 1875
Score = 37.0 bits (85), Expect = 0.011
Identities = 81/484 (16%), Positives = 135/484 (27%), Gaps = 178/484 (36%)
Query: 6 AFIVDNLQNG-------------NGFSNGFSLKSRD---------CETTTVIGD-----K 38
++ ++ F N + L+ D E T + K
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCY-LEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 39 TYVIAGSDESIGVKIYDRSTGNWLIPAVRGIEPRPC-----KGHSAVLLNEDRIL----- 88
Y+ A + + +D+ + + L AV + +G++ E R L
Sbjct: 125 NYITA---RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 89 -----VIKKGSSSDDCLWFL---EVDTPYVREQKKVVGAEVVAWSKGVIGNVEKPVVITG 140
+IK S + L L +D V Q G ++ W +
Sbjct: 182 VLVGDLIK---FSAETLSELIRTTLDAEKVFTQ----GLNILEW-------------LEN 221
Query: 141 PSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGV----HYHFTERSVMEKAIKD 196
PS P + P + GV HY T + +
Sbjct: 222 PSNT-------------PD-----KDYLLSIPISCPLIGVIQLAHYVVTAKLL------- 256
Query: 197 GKFLEFASVHGNLYGTSVEA---VEAVA-----------DAGKRCILDIDVQGARSVRAS 242
G + L G + + V AVA + ++ I + G R A
Sbjct: 257 G--FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 243 PLDAIFIFICPPSM-EELEER--------LRARGTETEDQILKRLRNAKEEIKQGKSSGI 293
P ++ PPS+ E+ E L T++Q+ + + GK
Sbjct: 315 PNTSL-----PPSILEDSLENNEGVPSPMLSISNL-TQEQVQDYVNKTNSHLPAGK---- 364
Query: 294 FDHI---LYN--------------DKLEECYENLKKHLGLDGSIATNHQTSPKGID--LP 334
+ L N L K GLD S + K + LP
Sbjct: 365 --QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 335 AD---HSVS--KVANKVIIKCGAAEGKASKNLMVLDVSSLKGGAPGRTRGLQVYTVDSFS 389
HS A+ +I K KN + + ++ P VY
Sbjct: 423 VASPFHS-HLLVPASDLINK------DLVKNNVSFNAKDIQ--IP-------VY---DTF 463
Query: 390 DGLN 393
DG +
Sbjct: 464 DGSD 467
Score = 37.0 bits (85), Expect = 0.012
Identities = 37/214 (17%), Positives = 64/214 (29%), Gaps = 85/214 (39%)
Query: 67 RGIEPRPCK--GHS-----AVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKVVGA 119
+G+ P GHS A L S +D + +++
Sbjct: 1750 KGLIPADATFAGHSLGEYAA--------LA----SLAD----VMSIES----------LV 1783
Query: 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDG 179
EVV +G+ V P G S G M + R + ++
Sbjct: 1784 EVVF-YRGMTMQVAVPRDELGRSNYG--------------MIAINPG---RVAASFSQEA 1825
Query: 180 VHYHFTERSVMEKAIKD-GKFLEFASVHGNL------Y---GTSVEAVEAVADAGKRCIL 229
+ Y V+E+ K G +E N Y G + A++ V +
Sbjct: 1826 LQY------VVERVGKRTGWLVEIV----NYNVENQQYVAAGD-LRALDTVTNV------ 1868
Query: 230 DIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263
++ + + L S+EE+E L
Sbjct: 1869 -LNFIKLQKIDIIELQKSL------SLEEVEGHL 1895
Score = 36.6 bits (84), Expect = 0.019
Identities = 26/204 (12%), Positives = 44/204 (21%), Gaps = 62/204 (30%)
Query: 65 AVRGIEPR-------------PCKGH-SAVLLNEDRILVIKKGSSSD---DCLWFLEVDT 107
++ + P L+N + LV+ G L +
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS-GPPQSLYGLNLTLRKAKA 398
Query: 108 PYVREQKKVVGAEVVAWSKGVIGNVEKPVV------ITGP------SGVGKGTLISMLMK 155
P +Q ++ +E K + P ++
Sbjct: 399 PSGLDQSRIPFSE------------RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 156 EF---PSMFGFSVSHTT--RAPRAMEKDGVHYH----FTERSVMEKAIKDG--KFLEF-- 202
V T R + E + L+F
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Query: 203 --AS-----VHGNLYGTSVEAVEA 219
AS H N GT V + A
Sbjct: 507 GGASGLGVLTHRNKDGTGVRVIVA 530
Score = 36.2 bits (83), Expect = 0.021
Identities = 38/213 (17%), Positives = 68/213 (31%), Gaps = 80/213 (37%)
Query: 4 APAFIVDNLQNGNG-----FS-NGFSLK---------------SRDCETTTVIGDKTYVI 42
P+ + D+L+N G S + + + + E + V G K V+
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 43 AGSDES-IGVKIYDRSTGNWLIPAVRGIE----P---RPCKG-----------HSAVLLN 83
+G +S G+ + R A G++ P R K HS +L
Sbjct: 380 SGPPQSLYGLNLTLRK-----AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL-- 432
Query: 84 EDRILVIKKGSSSDDCLWF---LEVDTP-Y-------VREQKKVVGAEVVAWSKGVIGNV 132
+I K ++ + +++ P Y +R + +V I +
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQI--PVYDTFDGSDLRVLSGSISERIVDC----I--I 484
Query: 133 EKPV------------VIT-GPSGV-GKGTLIS 151
PV ++ GP G G G L
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGLGVLTH 517
Score = 31.2 bits (70), Expect = 0.80
Identities = 33/163 (20%), Positives = 50/163 (30%), Gaps = 43/163 (26%)
Query: 239 VRASPLDAIFIFICPPSMEELEERLRARGTETEDQI------LKRLRNAKEEIKQGKSSG 292
AS L F I P E A E L + + E K G+
Sbjct: 28 FIASQLQEQFNKILPEPTEGF-----AADDEPTTPAELVGKFLGYVSSLVEPSKVGQ--- 79
Query: 293 IFDHILYN--DKLEECYENLKK---HLGLDGSIATNHQTSPKGIDLPADHSVSKVANKVI 347
FD +L + E CY L+ H ++A L ++ + V K +
Sbjct: 80 -FDQVLNLCLTEFENCY--LEGNDIH-----ALAAK---------LLQENDTTLVKTKEL 122
Query: 348 IKC-GAAEGKASKNLMVLDVSSLKGGAP-GRTRGLQVYTVDSF 388
IK A A + S+L G + + + F
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ---LVAI--F 160
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2-
keto-3-deoxygluconate kinase; 2.00A {Sulfolobus
solfataricus} PDB: 2var_A*
Length = 313
Score = 37.5 bits (88), Expect = 0.005
Identities = 14/118 (11%), Positives = 38/118 (32%), Gaps = 14/118 (11%)
Query: 183 HFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDV--------Q 234
+ + E +++ + + + + + EAV + K LD ++ +
Sbjct: 115 RLSPEDINENYVRNSRLVHSTGITLAISDNAKEAVIKAFELAKSRSLDTNIRPKLWSSLE 174
Query: 235 GARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE---IKQGK 289
A+ S L I + ++ + D+ ++ + + K G
Sbjct: 175 KAKETILSILKKYDIEVLITDPDDTK---ILLDVTDPDEAYRKYKELGVKVLLYKLGS 229
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 36.5 bits (85), Expect = 0.011
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 9/68 (13%)
Query: 27 RDCETTTVIGDKTYVIAGSDESIGVK---IYDRSTGNW-LIPAVRGIEPRPCKGHSAVLL 82
R V+ + Y G D + YD T W + + +
Sbjct: 206 RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM----KHRRSALGITVH 261
Query: 83 NEDRILVI 90
RI V+
Sbjct: 262 Q-GRIYVL 268
Score = 35.8 bits (83), Expect = 0.020
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 10/81 (12%)
Query: 24 LKSRDCETTTVIGDKTYVIAGSDESIG---VKIYDRSTGNW-LIPAVRGIEPRPCKGHSA 79
R+ VI Y + GS I V+ Y+ W L+ + G
Sbjct: 109 SVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM----LTRRIGVGV 164
Query: 80 VLLNEDRILVIKKGSSSDDCL 100
+LN + + G + L
Sbjct: 165 AVLN-RLLYAV-GGFDGTNRL 183
Score = 30.0 bits (68), Expect = 1.4
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 11/65 (16%)
Query: 33 TVIGDKTYVIAGSDESIG-------VKIYDRSTGNWLIPAVRGIEPRPCKGHSAVLLNED 85
V+G Y + G + S + Y+ T W P PR +++
Sbjct: 67 CVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW-SPCAPMSVPR--NRIGVGVID-G 122
Query: 86 RILVI 90
I +
Sbjct: 123 HIYAV 127
Score = 29.6 bits (67), Expect = 1.9
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 27 RDCETTTVIGDKTYVIAGSDESIGVK---IYDRSTGNW-LIPAVRGIEPRPCKGHSAV 80
R TV + YV+ G D + YD T W + + G
Sbjct: 253 RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM----TSGRSGVGVA 306
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 35.4 bits (81), Expect = 0.015
Identities = 35/207 (16%), Positives = 60/207 (28%), Gaps = 45/207 (21%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
K VV+TG GVG T + M ++ + + SVM +
Sbjct: 4 KVVVVTGVPGVGSTTSSQLAMDNLR-----------------KEGVNYKMVSFGSVMFEV 46
Query: 194 IKDGKFLEFASVHGNLYGTS-----VEAVEAVADAGK--RCILD---IDVQGARSVRASP 243
K+ + + + A +A+ K +D + P
Sbjct: 47 AKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLP 106
Query: 244 --------LDAIFIFICPPSMEELEERL-----RARGTETEDQILKRLRNAKEEIKQ-GK 289
D I + +E+ R R R +T I + + G
Sbjct: 107 SWVLNELNPDLIIVVETTG--DEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGV 164
Query: 290 SSGIFDHILYN--DKLEECYENLKKHL 314
+G I+ N L++ E L L
Sbjct: 165 LTGATVKIVQNRNGLLDQAVEELTNVL 191
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.5 bits (81), Expect = 0.016
Identities = 8/57 (14%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 257 EELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKH 313
EE +RL+ ++ + AK+++++ + ++++E+ N +
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEW-------NQRQSEQVEKNKINNRIA 141
Score = 27.4 bits (60), Expect = 7.5
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 257 EELEERLRARGTETEDQILKRLRNAKEE-IKQGKSSGI 293
++LEE + + + E R A + +Q + I
Sbjct: 118 KDLEEWNQRQSEQVEKNK-INNRIADKAFYQQPDADII 154
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 35.1 bits (81), Expect = 0.019
Identities = 18/138 (13%), Positives = 42/138 (30%), Gaps = 31/138 (22%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+++ GP K T+ + L KE + + ++ + + +
Sbjct: 4 IILEGPDCCFKSTVAAKLSKE----LKYPI---------IKGSSFELAKSGNEKLFEHFN 50
Query: 196 -----DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIF 250
D ++ +Y + + + R I A ++
Sbjct: 51 KLADEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIE----------DKIKAKAKVVY 100
Query: 251 I-CPPSMEELEERLRARG 267
+ P +++RLR RG
Sbjct: 101 LHADP--SVIKKRLRVRG 116
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 35.4 bits (82), Expect = 0.027
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 27 RDCETTTVIGDKTYVIAGSDESIGVK---IYDRSTGNW-LIPAVRGIEPRPCKGHSAVLL 82
R TV + V AG ++ +Y + W A P+ S V L
Sbjct: 187 RSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF----PQERSSLSLVSL 242
Query: 83 NEDRILVI 90
+ I
Sbjct: 243 V-GTLYAI 249
Score = 32.0 bits (73), Expect = 0.27
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 19/88 (21%)
Query: 27 RDCETTTVIGDKTYVIAGSDESIG------------VKIYDRSTGNWLIPAVRGIEPRPC 74
R + + Y I G + Y+ W G+
Sbjct: 234 RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW-----EGVLREIA 288
Query: 75 KGHSAVLLNEDRILVIKKGSSSDDCLWF 102
A L R+ V+ + + + L+F
Sbjct: 289 YAAGATFLP-VRLNVL-RLTKMAENLYF 314
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 34.6 bits (80), Expect = 0.041
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 27 RDCETTTVIGDKTYVIAGSDESIGVK---IYDRSTGNW-LIPAVRGIEPRPCKGHSAVLL 82
R V+ + Y + G D + K +YD +T W + + + +
Sbjct: 195 RSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM----NMCRRNAGVCAV 250
Query: 83 NEDRILVI 90
N + V+
Sbjct: 251 N-GLLYVV 257
Score = 34.2 bits (79), Expect = 0.063
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 27 RDCETTTVIGDKTYVIAGSDESIG---VKIYDRSTGNWLIPAVRGIEPRPCKGHSAVLLN 83
R + YV+ G D S V+ Y+ +T W + + R +++
Sbjct: 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGR--SYAGVTVID 299
Query: 84 EDRI 87
R+
Sbjct: 300 -KRL 302
Score = 32.6 bits (75), Expect = 0.21
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 33 TVIGDKTYVIAGSDESIG---VKIYDRSTGNWLIPAVRGIEPRPCKGHSAVLLNEDRILV 89
+ + + G + S+ V YD W + R A +LN +
Sbjct: 58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQW-TSVANMRDRR--STLGAAVLN-GLLYA 113
Query: 90 I 90
+
Sbjct: 114 V 114
Score = 32.2 bits (74), Expect = 0.26
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 27 RDCETTTVIGDKTYVIAGSDESIG-----VKIYDRSTGNW-LIPAVRGIEPRPCKGHSAV 80
R V+G Y + G D + V+ Y+ +T W I + R G
Sbjct: 146 RSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS--TRR--SGAGVG 201
Query: 81 LLNEDRILVI 90
+LN + + +
Sbjct: 202 VLN-NLLYAV 210
Score = 31.9 bits (73), Expect = 0.36
Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 9/71 (12%)
Query: 24 LKSRDCETTTVIGDKTYVIAGSDESIGVK---IYDRSTGNW-LIPAVRGIEPRPCKGHSA 79
R V+ Y + G D S G+ Y+ + W + +
Sbjct: 96 RDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM----NTRRSSVGV 151
Query: 80 VLLNEDRILVI 90
++ + +
Sbjct: 152 GVVG-GLLYAV 161
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 34.6 bits (78), Expect = 0.048
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 133 EKPVVI--TGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190
+ P+ I +GP G GK + +G S D + ++ +
Sbjct: 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGY-----ASIDDFYLTHEDQLKL 83
Query: 191 EKAIKDGKFLE 201
+ K+ K L+
Sbjct: 84 NEQFKNNKLLQ 94
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 34.6 bits (80), Expect = 0.048
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 27 RDCETTTVIGDKTYVIAGSDESIGVK---IYDRSTGNW-LIPAVRGIEPRPCKGHSAVLL 82
R + DK + + G + G+ YD W ++ + P +
Sbjct: 191 RKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM----PWKGVTVKCAAV 246
Query: 83 NEDRILVI 90
+ V+
Sbjct: 247 G-SIVYVL 253
Score = 33.5 bits (77), Expect = 0.095
Identities = 16/69 (23%), Positives = 21/69 (30%), Gaps = 10/69 (14%)
Query: 27 RDCETTTVIGDKTYVIAGSDESIG----VKIYDRSTGNW-LIPAVRGIEPRPCKGHSAVL 81
RD K Y GS+ + YD T +W P++ H V
Sbjct: 92 RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM----LTQRCSHGMVE 147
Query: 82 LNEDRILVI 90
N I V
Sbjct: 148 AN-GLIYVC 155
Score = 32.3 bits (74), Expect = 0.26
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 13/72 (18%)
Query: 27 RDCETTTVIGDKTYVIAGSDESIG-------VKIYDRSTGNW-LIPAVRGIEPRPCKGHS 78
R YV GS + ++YD +T W + + E R K H
Sbjct: 140 RCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI--EAR--KNHG 195
Query: 79 AVLLNEDRILVI 90
V + D+I +
Sbjct: 196 LVFVK-DKIFAV 206
Score = 30.8 bits (70), Expect = 0.74
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Query: 33 TVIGDKTYVIAGSDESI--GVKIYDRSTGNWLIPAVRGIEPRPCKGHSAVLLNEDRILVI 90
+ Y++ GS + Y+ +W + PR +A +I
Sbjct: 52 VFWDNVVYILGGSQLFPIKRMDCYNVVKDSW-YSKLGPPTPR--DSLAACAAE-GKIYTS 107
Score = 28.1 bits (63), Expect = 4.8
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 26 SRDCETTTVIGDKTYVIAGSDESIGVK---IYDRSTGNW 61
+G YV+AG + Y+ T W
Sbjct: 237 KGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKW 275
Score = 27.7 bits (62), Expect = 7.7
Identities = 5/56 (8%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 36 GDKTYVIAGSDESIGVKIYDRSTGNW-LIPAVRGIEPRPCKGHSAVLLNEDRILVI 90
D + G + + ++ +W I + + V + + + ++
Sbjct: 11 HDYRIALFGGSQPQSCRYFNPKDYSWTDIRCP----FEKRRDAACVFWD-NVVYIL 61
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 33.6 bits (76), Expect = 0.062
Identities = 27/203 (13%), Positives = 60/203 (29%), Gaps = 33/203 (16%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPS-------------MFGFSVSHTTRAPRAMEKDGV 180
K ++TG GVGK T+++ + + + M ++ R +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKL- 60
Query: 181 HYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVR 240
++ + A K A G L+ + + +G L V +
Sbjct: 61 -SVEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIR--TPSGYLPGLPSYV-----IT 112
Query: 241 ASPLDAIFIFICPPSMEELEERL-----RARGTETEDQILKRLRNAKEE--IKQGKSSGI 293
IF+ P + + R R R +++ ++ N +G
Sbjct: 113 EINPSVIFLLEADP--KIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGS 170
Query: 294 FDHILYN--DKLEECYENLKKHL 314
++ N + + +
Sbjct: 171 TVKVIVNVEGDPSIAANEIIRSM 193
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 34.2 bits (79), Expect = 0.067
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 27 RDCETTTVIGDKTYVIAGSDESIGVK---IYDRSTGNW-LIPAVRGIEPRPCKGHSAVLL 82
R TV+ + Y IAG D + + YD +W ++ ++ +L
Sbjct: 244 RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSM----GTQRCDAGVCVL 299
Query: 83 NE 84
E
Sbjct: 300 RE 301
Score = 33.0 bits (76), Expect = 0.13
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 27 RDCETTTVIGDKTYVIAGSDESIGVK---IYDRSTGNW-LIPAVRGIEPRPCKGHSAVLL 82
R ++ D YV+ G D + + Y+ T +W + ++ PR A +L
Sbjct: 197 RSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT--TPR--CYVGATVL 252
Query: 83 NEDRILVI 90
R+ I
Sbjct: 253 R-GRLYAI 259
Score = 33.0 bits (76), Expect = 0.14
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 24 LKSRDCETTTVIGDKTYVIAGSDESIGVK---IYDRSTGNW-LIPAVRGIEPRPCKGHSA 79
R T +GD YV G D S YD + W ++ + +G
Sbjct: 100 NVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM----QTAREGAGL 155
Query: 80 VLLNEDRILVIKKGSSSDDCL 100
V+ + I + G + L
Sbjct: 156 VVAS-GVIYCL-GGYDGLNIL 174
Score = 28.4 bits (64), Expect = 3.7
Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 10/64 (15%)
Query: 33 TVIGDKTYVIAGSDESIG---VKIYDRST---GNWLIPAVRGIEPRPCKGHSAVLLNEDR 86
+ D+ YVI G D V+ D + G W R A L D
Sbjct: 59 VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW-YSVAPMNVRR--GLAGATTLG-DM 114
Query: 87 ILVI 90
I V
Sbjct: 115 IYVS 118
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 34.5 bits (79), Expect = 0.068
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSM----FGFSVSHTT 169
+ +P+++ GP G GK ++ ++ FP FS S TT
Sbjct: 1302 SEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFS-SATT 1343
Score = 28.7 bits (64), Expect = 5.1
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
V++ GPSG GK T + ++ + P+A+ KD + + +
Sbjct: 909 VMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTT---REWT 965
Query: 196 DGKF 199
DG F
Sbjct: 966 DGLF 969
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 33.9 bits (78), Expect = 0.069
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 9/68 (13%)
Query: 27 RDCETTTVIGDKTYVIAGSDESIGVK---IYDRSTGNW-LIPAVRGIEPRPCKGHSAVLL 82
R + K + G E +D T W ++ P+ S V L
Sbjct: 197 RSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF----PQERSSISLVSL 252
Query: 83 NEDRILVI 90
+ I
Sbjct: 253 A-GSLYAI 259
Score = 30.8 bits (70), Expect = 0.64
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 11/64 (17%)
Query: 33 TVIGDKTYVIAGSDESIG-----VKIYDRSTGNW-LIPAVRGIEPRPCKGHSAVLLNEDR 86
+ DK YV+AG D V YD W + + P GH+ + N
Sbjct: 106 GEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL----PIKVYGHNVISHN-GM 160
Query: 87 ILVI 90
I +
Sbjct: 161 IYCL 164
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 33.3 bits (77), Expect = 0.092
Identities = 37/176 (21%), Positives = 60/176 (34%), Gaps = 47/176 (26%)
Query: 127 GVIGNVEKP--VVITGPSGVGKGTLISMLMKEFPSMFGF---SVSHTTRAPRAMEKDGVH 181
G + ++ K + I G G GKGT L++++ GF S R A E
Sbjct: 4 GFMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKY----GFTHLSTGELLREELASE----- 54
Query: 182 YHFTERSVMEKAIKDGKFLEFASVHGNLYGTSV------EAVEAVADAGKRCILD----- 230
+ERS + + I + G+L + + EA+ A + ++D
Sbjct: 55 ---SERSKLIRDIME---------RGDLVPSGIVLELLKEAMVASLGDTRGFLIDGYPRE 102
Query: 231 IDVQG-ARSVRASPLDAIFIFICPPSMEELEERLRARGTE------TEDQILKRLR 279
+ QG R + C + + RL T I KRL
Sbjct: 103 VK-QGEEFGRRIGDPQLVICMDCS--ADTMTNRLLQMSRSSLPVDDTTKTIAKRLE 155
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 33.9 bits (77), Expect = 0.098
Identities = 26/199 (13%), Positives = 52/199 (26%), Gaps = 7/199 (3%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFG-FSVSHTTR----APRAMEKDGVHYHFTERSVM 190
+ + GP+G GK TLI++L E G R A H T +
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYI 761
Query: 191 EKAIKDGKFLEFASVHGNLYGTSVEAVEAVADA--GKRCILDIDVQGARSVRASPLDAIF 248
+ + G+ E + G + + + F
Sbjct: 762 QWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSF 821
Query: 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYE 308
+ M+ + + + + + + + + E
Sbjct: 822 LLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIE 881
Query: 309 NLKKHLGLDGSIATNHQTS 327
LGLD I ++ +
Sbjct: 882 EHCSMLGLDPEIVSHSRIR 900
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 33.3 bits (75), Expect = 0.11
Identities = 26/200 (13%), Positives = 55/200 (27%), Gaps = 39/200 (19%)
Query: 133 EKPVVI--TGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190
++P+ I G SG GK T+ + KEF + R+ H +
Sbjct: 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRS----------QHPHYLELQ 79
Query: 191 EKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILD--------IDVQGARSVRAS 242
++ KD V ++ G +++
Sbjct: 80 QEYGKDSVEY----TKDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKG 135
Query: 243 PLDAIFIFICPPSMEELEERLRARGTE------------TEDQILKRLRNAKEEIKQGKS 290
+ + P E R E ++ + + + ++ +
Sbjct: 136 YEVQLALIATKP--ELSYLSTLIRYEELYIINPNQARATPKEHHDFIVNHLVDNTRKLEE 193
Query: 291 SGIFDHI-LYNDKLEECYEN 309
IF+ I +Y Y++
Sbjct: 194 LAIFERIQIYQRDRSCVYDS 213
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 33.4 bits (77), Expect = 0.11
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-------HTTRA 171
+ + G SGVGK +L++ L+ + VS HTT A
Sbjct: 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTA 260
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A
{Halothermothrix orenii}
Length = 327
Score = 33.3 bits (77), Expect = 0.11
Identities = 16/119 (13%), Positives = 37/119 (31%), Gaps = 15/119 (12%)
Query: 183 HFTERSVMEKAIKDGKFLEFASVH---GNLYGTSVEAVEAVADAGKRCILDIDV-----Q 234
+ E ++ + IK K ++ T+++A + GK D
Sbjct: 131 YLQEDDIIFELIKRSKVFHLSTFILSRKPARDTAIKAFNYAREQGKIVCFDPCYRKVLWP 190
Query: 235 GARSVRASPLDAIFIF-ICPPSMEELEERLRARGTETEDQILKRLRNAKEE---IKQGK 289
+ I PS+++ G ++ + +KR + + G+
Sbjct: 191 EGDDGAGVVEEIISRADFVKPSLDDAR---HLFGPDSPENYVKRYLELGVKAVILTLGE 246
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 33.3 bits (77), Expect = 0.12
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 137 VITGPSGVGKGTLISMLMKEFPSMFGFSVS-------HTTRAPRAMEKDG 179
V G SGVGK +L++ + E +S HTTR + G
Sbjct: 177 VFAGQSGVGKSSLLNAISPELGLRTN-EISEHLGRGKHTTRHVELIHTSG 225
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 32.7 bits (74), Expect = 0.13
Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 21/152 (13%)
Query: 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAME 176
+G E + + + G + VV+ G SG GK T+ + E F E
Sbjct: 13 LGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEF-------------AE 59
Query: 177 KDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILD--IDVQ 234
D H + ++ G L L + E ++A ADAG I+ +
Sbjct: 60 ADAFH----SPENIAT-MQRGIPLTDEDRWPWLRSLA-EWMDARADAGVSTIITCSALKR 113
Query: 235 GARSVRASPLDAIFIFICPPSMEELEERLRAR 266
R V ++ E ++ R+ R
Sbjct: 114 TYRDVLREGPPSVDFLHLDGPAEVIKGRMSKR 145
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 32.5 bits (75), Expect = 0.15
Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 41/163 (25%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSH--TTRAPRAMEKDGVHYHFTERSVMEKA 193
+ + G G GKGT +++++ +H T R+ G + R
Sbjct: 12 IFVVGGPGSGKGTQCEKIVQKY------GYTHLSTGDLLRSEVSSG-----SARGKKLSE 60
Query: 194 IKDGKFLEFASVHGNLYGTSV------EAVEAVADAGKRCILD-----IDVQGARSVRAS 242
I + G L +A+ A + K ++D + R
Sbjct: 61 IME---------KGQLVPLETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG 111
Query: 243 PLDAIFIFICPPSMEELEERLRARGTE------TEDQILKRLR 279
+ E + +RL RG E+ I KRL
Sbjct: 112 QPTLLLYVDAG--PETMTQRLLKRGETSGRVDDNEETIKKRLE 152
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 33.1 bits (75), Expect = 0.16
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV 165
QK V+ I + V I GP+G G TL +++ S +
Sbjct: 29 GQKNAF-NIVMKA----IKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGI 77
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 32.4 bits (73), Expect = 0.17
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 131 NVEKPVVIT--GPSGVGKGTLISMLMKEFPSM 160
+P + G G GK T ++ K +
Sbjct: 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDI 47
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 32.5 bits (75), Expect = 0.18
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 137 VITGPSGVGKGTLISMLMKEFPSMFGFSVS-------HTTRA 171
+ G SGVGK +L++ + VS HTT
Sbjct: 173 TMAGLSGVGKSSLLNAINPGLKLRVS-EVSEKLQRGRHTTTT 213
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 31.9 bits (72), Expect = 0.19
Identities = 13/128 (10%), Positives = 27/128 (21%), Gaps = 6/128 (4%)
Query: 135 PVV-ITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
V + G GK TL+ + G+ V + + E+A
Sbjct: 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE-GWRVGTVKHHG--HGGEPARPEGVDSVRHERA 61
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
+ L +D+ + + +
Sbjct: 62 GAVATAV--EGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSE 119
Query: 254 PSMEELEE 261
L+
Sbjct: 120 EDWASLQH 127
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 32.1 bits (72), Expect = 0.24
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 133 EKPVVIT--GPSGVGKGTLISMLMKEFPSM 160
+ I+ G GK T +++L +
Sbjct: 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDW 51
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 32.9 bits (75), Expect = 0.26
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSM----FGFSVSHTT 169
N ++ +++ GP G GK +++ ++ FS TT
Sbjct: 1265 NSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS-KDTT 1306
Score = 28.7 bits (64), Expect = 4.1
Identities = 6/43 (13%), Positives = 16/43 (37%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKD 178
+++ G +G GK ++ G + + + K+
Sbjct: 926 LILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKE 968
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 32.2 bits (74), Expect = 0.26
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-------HTTRA 171
++ GPSGVGK +++S L E + VS HTT
Sbjct: 166 FICILAGPSGVGKSSILSRLTGE--ELRTQEVSEKTERGRHTTTG 208
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose
metabolic process, PFKB family,11206G, PSI-II, NYSGXRC,
structural genomics; HET: ATP; 1.79A {Escherichia coli
O6} PDB: 3k9e_A
Length = 330
Score = 32.2 bits (74), Expect = 0.26
Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 18/120 (15%)
Query: 183 HFTERSVMEKAIKDGKFLEFASVH---GNLYGTSVEAVEAVADAGKRCILDIDV------ 233
+ + V E +KD ++ +AV V G D ++
Sbjct: 117 KLSAQHVDENILKDCTHFHIMGSSLFSFHMVDAVKKAVTIVKANGGVISFDPNIRKEMLD 176
Query: 234 -QGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE---IKQGK 289
R L+ I++ PS E+ T ++ + + +K+G
Sbjct: 177 IPEMRDALHFVLELTDIYM--PSEGEVL---LLSPHSTPERAIAGFLEEGVKEVIVKRGN 231
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor,
WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB:
2zkq_a
Length = 340
Score = 32.1 bits (74), Expect = 0.29
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 37 DKTYVIAGSDESIGVKIYDRSTGNWLIPAVRGIEPRPCKGHS 78
++ ++ A + SI KI+D + + + K
Sbjct: 267 NRYWLCAATGPSI--KIWDLEGKIIVDELKQEVISTSSKAEP 306
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 31.6 bits (71), Expect = 0.31
Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 20/131 (15%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+V+ G SG GK ++ + + F + +G+ +R AI
Sbjct: 21 IVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIG 80
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
+ AS + S A KR D + A F+F+
Sbjct: 81 E----RLASREPVVVSCS---------ALKRSYRDKLRESAPG------GLAFVFLHGS- 120
Query: 256 MEELEERLRAR 266
L ER+ R
Sbjct: 121 ESVLAERMHHR 131
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 31.4 bits (72), Expect = 0.34
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 12/86 (13%)
Query: 243 PLDAIFIFICPPSMEELEERLRARGTE------TEDQILKRLRNAKEE----IKQGKSSG 292
+ + F C E ER RG + + KR++ + I + G
Sbjct: 113 DVSFVLFFDCN--NEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMG 170
Query: 293 IFDHILYNDKLEECYENLKKHLGLDG 318
I + ++E ++ + + +G
Sbjct: 171 KVKKIDASKSVDEVFDEVVQIFDKEG 196
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 31.0 bits (71), Expect = 0.41
Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 43/165 (26%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA-I 194
+ + G G GKGT L+K++ S S RA + G ++ + K I
Sbjct: 18 IFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDLLRA--EQGRAG-----SQYGELIKNCI 69
Query: 195 KDGKFLEFASVHGNLYGTSVEAV---------EAVADAGKRCILD-----IDVQGARSVR 240
K+G+ + E + V + ++D +D +
Sbjct: 70 KEGQIV------------PQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERD 117
Query: 241 ASPLDAIFIFICPPSMEELEERLRARGTE------TEDQILKRLR 279
I F CP + + ERL RG + I KR
Sbjct: 118 IVESKFILFFDCPE--DIMLERLLERGKTSGRSDDNIESIKKRFN 160
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 31.3 bits (70), Expect = 0.45
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFP 158
+ + I G VGK T + +L K +P
Sbjct: 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 31.3 bits (71), Expect = 0.45
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 138 ITGPSGVGKGTLISMLMKEF 157
+TG G GK T +
Sbjct: 61 VTGTPGAGKSTFLEAFGMLL 80
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 31.3 bits (71), Expect = 0.47
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 138 ITGPSGVGKGTLISMLMKEF 157
ITG GVGK T I L
Sbjct: 60 ITGVPGVGKSTTIDALGSLL 79
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 31.5 bits (72), Expect = 0.50
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFG 162
+ + G +G+GK T + +L + G
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLG 132
Score = 29.6 bits (67), Expect = 1.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 136 VVITGPSGVGKGTLISMLM 154
+V+ G +G GK TLI +L
Sbjct: 381 LVMMGENGTGKTTLIKLLA 399
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 31.0 bits (70), Expect = 0.51
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 125 SKGVIGNVEKPVVI--TGPSGVGKGTLISMLMKEFPS 159
S G++ K +I +G + GK TL L K P+
Sbjct: 11 SSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPN 47
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 30.8 bits (69), Expect = 0.52
Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 21/133 (15%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
V+ G SG GK + S + + A DG H +
Sbjct: 11 YVLMGVSGSGKSAVASEVAHQL---------------HAAFLDGDFLHPRRNIEK---MA 52
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILD--IDVQGARSVRASPLDAIFIFICP 253
G+ L L + +A A+ K ++ + R + +
Sbjct: 53 SGEPLNDDDRKPWLQALN-DAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLK 111
Query: 254 PSMEELEERLRAR 266
+ +E RL+AR
Sbjct: 112 GDFDVIESRLKAR 124
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 31.4 bits (71), Expect = 0.53
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 138 ITGPSGVGKGTLISMLMKEF 157
ITG GVGK T I L
Sbjct: 84 ITGVPGVGKSTAIEALGMHL 103
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 31.5 bits (71), Expect = 0.55
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 36 GDKTYVIAGSDESIGVKIYDRSTGNWLIPAVRGIEPRPCKGHSAVLLNEDRILVI----K 91
K Y G +S I+ G W G + ++ N + +L+I
Sbjct: 272 NGKNYAHEGLKKSYSTDIHLWHNGKW---DKSGELSQGRAYGVSLPWN-NSLLIIGGETA 327
Query: 92 KGSSSDDCL 100
G + D +
Sbjct: 328 GGKAVTDSV 336
Score = 29.9 bits (67), Expect = 1.7
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 27 RDCETTTVIGDKTYVIAGSDESIGVKI-YDRSTGNWLIPAVRGIEPRPCKGHSAVLLNED 85
T + D Y+ GS + K+ W A PR ++ ++
Sbjct: 10 FKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPR--DQATSAFID-G 66
Query: 86 RILVI 90
+ V
Sbjct: 67 NLYVF 71
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Length = 332
Score = 31.0 bits (71), Expect = 0.57
Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 12/119 (10%)
Query: 183 HFTERSVMEKAIKDGKFLEFASVH---GNLYGTSVEAVEAVADAGKRCILDIDV-----Q 234
+ + V E I+ K L + ++A+ + + ++D +
Sbjct: 125 YLSPEEVNEAYIRRSKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYSWE 184
Query: 235 GARSVRASPLDAIFIF-ICPPSMEELEERLRARGTETEDQILKRLRNAKEE---IKQGK 289
I + EE + D+ ++ L E IK G
Sbjct: 185 TPEETAVYYSLVAEQSDIVIGTREEFDVLENRTEKGDNDETIRYLFKHSPELIVIKHGV 243
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 31.1 bits (71), Expect = 0.60
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 8/66 (12%)
Query: 275 LKRLRNAKEEIKQGKSSG------IFDHILYND--KLEECYENLKKHLGLDGSIATNHQT 326
+ L +++++ G F + D K+E E + K QT
Sbjct: 179 FQSLSEFRDKMRFRGIKGATGTQDSFLTLFAGDESKVEALDELVTKKANFSNRFLITGQT 238
Query: 327 SPKGID 332
+ D
Sbjct: 239 YSRQQD 244
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 31.0 bits (70), Expect = 0.60
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 138 ITGPSGVGKGTLISMLMKEF 157
++GP G GK T I K
Sbjct: 79 LSGPPGAGKSTFIEYFGKML 98
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 30.6 bits (70), Expect = 0.66
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 8/43 (18%)
Query: 243 PLDAIFIFICPPSMEELEERLRARGTE------TEDQILKRLR 279
+ F CP E + +RL RG + I KR
Sbjct: 110 DTKFVLFFDCP--EEVMTQRLLKRGESSGRSDDNIESIKKRFN 150
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 31.1 bits (71), Expect = 0.69
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 136 VVITGPSGVGKGTLISMLM 154
+ I GP+G+GK T + ML
Sbjct: 385 IGIVGPNGIGKTTFVKMLA 403
Score = 28.4 bits (64), Expect = 4.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 136 VVITGPSGVGKGTLISMLM 154
V I GP+G GK T + +L
Sbjct: 120 VGIVGPNGTGKTTAVKILA 138
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 30.6 bits (70), Expect = 0.83
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 126 KGVIGNVEK--PVVITGPSGVGKGTLI 150
KG+ ++ + VV+ GPSG GK T +
Sbjct: 41 KGINVHIREGEVVVVIGPSGSGKSTFL 67
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 30.8 bits (70), Expect = 0.83
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFG 162
+ + G +GVGK T++ +L E FG
Sbjct: 28 LGVLGKNGVGKTTVLKILAGEIIPNFG 54
Score = 30.8 bits (70), Expect = 0.92
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 136 VVITGPSGVGKGTLISMLMKEFP------SMFGFSVSHTTRAPRAMEKDGVHYHFTERSV 189
+ I GP+G+GK T +L+ E + +S+ + DG + E +
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNY-DGTVQQYLENAS 355
Query: 190 MEKAIKDGKFLE 201
+ F E
Sbjct: 356 KDALSTSSWFFE 367
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 30.8 bits (69), Expect = 0.85
Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 7/106 (6%)
Query: 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEK 192
++ G VGK +L+ + E P + ++ + + S +K
Sbjct: 31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPFQK 90
Query: 193 AIK------DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDID 232
+ KFL +L + + + I+ D
Sbjct: 91 FQSKFKISLNLKFLTLEPRKLSLREV-FRELNDLGEELGEFIVAFD 135
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 30.2 bits (68), Expect = 0.98
Identities = 5/28 (17%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 133 EKPVVI--TGPSGVGKGTLISMLMKEFP 158
+P +I +G + GK ++ + +++
Sbjct: 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.0
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 354 EGKASKNLMVLDVSSLKGGAPGRTRGLQV-YTVD 386
E +A K L +SLK A L + T++
Sbjct: 18 EKQALKKLQ----ASLKLYADDSAPALAIKATME 47
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 30.0 bits (67), Expect = 1.1
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 136 VVITGPSGVGKGTLISMLMKEF 157
+ I G G GK T+ + + K+
Sbjct: 3 IAIFGTVGAGKSTISAEISKKL 24
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 30.5 bits (69), Expect = 1.1
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 14/75 (18%)
Query: 37 DKTYVIAGSDESIGVKIYDRSTGNWLIPAVRGIEP-RPCKGHS----AVLLNEDR--ILV 89
VIA S V ++D + +P +GH + N + L+
Sbjct: 139 QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 198
Query: 90 IKKGSSSDD---CLW 101
S+SDD CLW
Sbjct: 199 ----SASDDHTICLW 209
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc, transferase; 2.70A
{Polaromonas SP}
Length = 336
Score = 30.3 bits (69), Expect = 1.1
Identities = 17/120 (14%), Positives = 37/120 (30%), Gaps = 16/120 (13%)
Query: 183 HFTERSVMEKAIKDGKFLEF----ASVHGNLYGTSVEAVEAVADAGKRCILDIDV----- 233
H + E + + L ++ + + ++ + AG+ D ++
Sbjct: 139 HMGVADIDEAWLLSARHLHATGVFPAISATTLPAARKTMDLMRAAGRSVSFDPNLRPTLW 198
Query: 234 QGARSVRASPLDAIFIF-ICPPSMEELEERLRARGTETEDQILKRLRNAKEE---IKQGK 289
+R + D P MEE G T + + + R + +K G
Sbjct: 199 ATPELMRDAINDLATRADWVLPGMEEGR---FLTGETTPEGVARFYRQLGAKLVVVKLGA 255
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 30.4 bits (68), Expect = 1.2
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 136 VVITGPSGVGKGTLISMLM---KEFPSMFGFSVSHTTRAP 172
V +TG +G GK + I+ L E V T
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER 111
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 29.4 bits (65), Expect = 1.2
Identities = 16/129 (12%), Positives = 38/129 (29%), Gaps = 8/129 (6%)
Query: 135 PVV-ITGPSGVGKGTLISMLMKEFPSMF--GFSVSHTTRAPRAMEKDGVHYHFTERSVME 191
P++ SG GK TL+ L+ + + HT + Y + +
Sbjct: 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQ 66
Query: 192 KAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFI 251
+ + + + ++ + A + +D+ + + I +F
Sbjct: 67 TIVASQQRWALMTETPDEEELDLQFL-----ASRMDTSKLDLILVEGFKHEEIAKIVLFR 121
Query: 252 CPPSMEELE 260
E
Sbjct: 122 DGAGHRPEE 130
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 29.7 bits (66), Expect = 1.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 134 KPVVITGPSGVGKGTLI----SMLMKEFPSMFGFSV 165
+ V +TGP GVGK TLI +L + GF
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYT 37
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 29.6 bits (66), Expect = 1.3
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 135 PVV-ITGPSGVGKGTLISMLMKEF 157
++ I G S GK TLI+ +M
Sbjct: 3 LILSIVGTSDSGKTTLITRMMPIL 26
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 29.6 bits (66), Expect = 1.3
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 136 VVITGPSGVGKGTLISMLMKEFP-SMFGF 163
++ITG GVGK TL+ +++ GF
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGF 31
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 29.7 bits (67), Expect = 1.4
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 128 VIGNVEKPVVI--TGPSGVGKGTLISMLMKEFP 158
+ +P +I +G + GK T+ +M+
Sbjct: 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 30.0 bits (68), Expect = 1.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 136 VVITGPSGVGKGTLISMLM 154
+ I GP+G+GK T + ML
Sbjct: 315 IGIVGPNGIGKTTFVKMLA 333
Score = 28.4 bits (64), Expect = 4.8
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFG 162
V I GP+G GK T + +L +
Sbjct: 50 VGIVGPNGTGKSTAVKILAGQLIPNLC 76
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate
metabolism, magnesium, metal-binding, multifunctional
enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A
1kkm_A*
Length = 205
Score = 29.2 bits (65), Expect = 1.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFG 162
V+ITG SGVGK L++ +
Sbjct: 37 VLITGDSGVGKSETALELVQRGHRLIA 63
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 29.9 bits (68), Expect = 1.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 136 VVITGPSGVGKGTLISMLM 154
V G SG GK TLI+++
Sbjct: 370 VAFVGMSGGGKSTLINLIP 388
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 29.5 bits (67), Expect = 1.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 136 VVITGPSGVGKGTLISMLMKEFP 158
++ G +G GK TL+++L P
Sbjct: 50 WILYGLNGAGKTTLLNILNAYEP 72
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa
form; zymogen, NTN-hydrolase, penicillin biosynthesis;
1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Length = 357
Score = 29.8 bits (66), Expect = 1.8
Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 18/80 (22%)
Query: 148 TLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207
T ++ K + G +V++ + + GV H R +E
Sbjct: 147 TEAGIIGKVGFNSAGVAVNYNALHLQGLRPTGVPSHIALRIALEST-------------- 192
Query: 208 NLYGTSVEAVEAVADAGKRC 227
+ +A + + + G
Sbjct: 193 ----SPSQAYDRIVEQGGMA 208
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics,
PSI, protein STR initiative; 2.60A {Fusobacterium
nucleatum subsp}
Length = 137
Score = 28.7 bits (64), Expect = 1.9
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDH 296
+++ L E I KR +N+ + +S + ++
Sbjct: 61 YKKIINDL----DEEFKVIGKRAKNSNIKTF-PRSCTVMEY 96
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 29.1 bits (65), Expect = 2.2
Identities = 27/160 (16%), Positives = 50/160 (31%), Gaps = 39/160 (24%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSV---SHTTRAPRAMEKDGVHYHFTERSVMEK 192
+++TG GVGK T L K + S R + K+ + K
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKE-------KYEEFIK 59
Query: 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILD-IDVQGARSVR------ASPLD 245
+ A I+D + S+R A +
Sbjct: 60 KS-------------------TYRLIDSALKNYWVIVDDTNYY--NSMRRDLINIAKKYN 98
Query: 246 AIFIFI-CPPSMEELEERLRARGTETEDQILKRLRNAKEE 284
+ I S++ L R RG + ++++K++ +E
Sbjct: 99 KNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMYEKFDE 138
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 29.5 bits (67), Expect = 2.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 136 VVITGPSGVGKGTLISMLM 154
V + G SG GK T+ ++
Sbjct: 372 VALVGRSGSGKSTIANLFT 390
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 29.5 bits (67), Expect = 2.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 136 VVITGPSGVGKGTLISMLM 154
V + G SG GK T+ S++
Sbjct: 372 VALVGRSGSGKSTIASLIT 390
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 28.9 bits (66), Expect = 2.3
Identities = 7/17 (41%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 134 KPVV-ITGPSGVGKGTL 149
+ +V I GPS GK ++
Sbjct: 2 RGIVTIDGPSASGKSSV 18
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
2.37A {Humulus lupulus}
Length = 339
Score = 29.1 bits (65), Expect = 2.3
Identities = 35/167 (20%), Positives = 54/167 (32%), Gaps = 45/167 (26%)
Query: 133 EKPVVITGPSGVGKGTLISMLMKEFP-------SM---FGFSVSHTTRAPRAMEKDGV-H 181
EK +V+ G +G GK L L FP M G + TT ++ GV H
Sbjct: 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDI--TTNKISVPDRGGVPH 97
Query: 182 YHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCIL------------ 229
+ E + F A +AV + K +L
Sbjct: 98 HLLGEVDPARGELTPADFRSLAG----------KAVSEITGRRKLPVLVGGSNSFIHALL 147
Query: 230 ---------DIDVQGARSVRASPLDAIFIFICPP-SMEELEERLRAR 266
+ +G+ SV +S L F+ S++ L + L R
Sbjct: 148 VDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKR 194
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 29.0 bits (66), Expect = 2.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 136 VVITGPSGVGKGTLISML 153
+ GPSG GK T+ S+L
Sbjct: 31 IAFAGPSGGGKSTIFSLL 48
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 28.8 bits (65), Expect = 2.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 136 VVITGPSGVGKGTLISMLMKEF 157
VI GP G GKGT+ + + F
Sbjct: 30 AVILGPPGSGKGTVCQRIAQNF 51
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 28.7 bits (65), Expect = 2.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 136 VVITGPSGVGKGTLISMLMKEF 157
VI G G GKGT+ S + F
Sbjct: 10 AVIMGAPGSGKGTVSSRITTHF 31
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 29.2 bits (66), Expect = 2.9
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 275 LKRLRNAKEEIKQGKSSG------IFDHILYND--KLEECYENLKKHLGLDGSIATNHQT 326
L+ L+ +++++ G F + D K+E+ + + + G + QT
Sbjct: 205 LQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQT 264
Query: 327 SPKGID 332
+ +D
Sbjct: 265 YTRKVD 270
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue
transglutaminase,acyltransferase; 2.50A {Pagrus major}
SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Length = 695
Score = 29.2 bits (65), Expect = 2.9
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 31/104 (29%)
Query: 102 FLEVDTPYVREQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMF 161
++ D P+V + V A+ + W G K + VGK IS
Sbjct: 382 GVKYDAPFVFAE---VNADTIYWIVQKDGQRRKITEDH--ASVGK--NIS---------- 424
Query: 162 GFSVSHTTRAPRAMEKDGVHYHFT-------ERSVMEKAIKDGK 198
T++ ++ V H+ ER V +KA +
Sbjct: 425 -------TKSVYGNHREDVTLHYKYPEGSQKEREVYKKAGRRVT 461
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 28.5 bits (64), Expect = 2.9
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 98 DCLWFLEVDTPYVREQKKVVGAEVVAWSKGVI----------GNVEKPVVITGPSGVGKG 147
D F ++ V + + ++ W + + G+ + ++I GP GK
Sbjct: 3 DGFKFANLEASVVAFEGSINKRKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKT 62
Query: 148 TLISMLMKE-----FPSM 160
+L+++L + S
Sbjct: 63 SLLTLLTTDSVRPTVVSQ 80
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 28.9 bits (64), Expect = 3.3
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 133 EKPVVI--TGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190
+K +I TG SG G T+ + F +VS +E D +H R+ M
Sbjct: 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVS--------IEGDA--FHRFNRADM 52
Query: 191 EKAIKD 196
+ +
Sbjct: 53 KAELDR 58
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 28.9 bits (65), Expect = 3.3
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 133 EKPVVITGPSGVGKGTLISML 153
++ V + G +G GK TL+S
Sbjct: 48 QR-VGLLGRTGSGKSTLLSAF 67
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 28.6 bits (65), Expect = 3.3
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 134 KPVV-ITGPSGVGKGTLISMLMKEF 157
PV+ I GPSG GKGTL + +
Sbjct: 5 APVITIDGPSGAGKGTLCKAMAEAL 29
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 28.7 bits (65), Expect = 3.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 136 VVITGPSGVGKGTLISML 153
V + GPSG GK T + ML
Sbjct: 32 VALLGPSGCGKTTTLLML 49
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 28.1 bits (62), Expect = 3.5
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFG 162
V+ITG + +GK L L+ +
Sbjct: 19 VLITGEANIGKSELSLALIDRGHQLVC 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 28.5 bits (64), Expect = 3.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPS 159
V+I GP+G GK TL+ + P
Sbjct: 33 VIILGPNGSGKTTLLRAISGLLPY 56
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 28.3 bits (64), Expect = 3.9
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 136 VVITGPSGVGKGTLISMLMKEF 157
+++ G G GKGT + + ++F
Sbjct: 11 LILLGAPGAGKGTQANFIKEKF 32
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 28.5 bits (64), Expect = 4.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFG 162
+ + G +G GK +L+ M+M E G
Sbjct: 67 LAVAGSTGAGKTSLLMMIMGELEPSEG 93
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 28.0 bits (63), Expect = 4.1
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 131 NVEKPVVI--TGPSGVGKGTLISMLMKEFP 158
+ KP VI G + GK TL L +
Sbjct: 2 SAPKPFVIGIAGGTASGKTTLAQALARTLG 31
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 28.8 bits (65), Expect = 4.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 136 VVITGPSGVGKGTLISMLM 154
+ + G SG GK T++ +L
Sbjct: 1062 LALVGSSGCGKSTVVQLLE 1080
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 28.7 bits (65), Expect = 4.3
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 136 VVITGPSGVGKGTLISMLM 154
V + GP+G GK T++++LM
Sbjct: 384 VALVGPTGSGKTTIVNLLM 402
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18;
NUDT18, NXR1, nucleotide hydrolase, hydrolase,
structural genomics; 2.10A {Homo sapiens}
Length = 156
Score = 27.8 bits (62), Expect = 4.3
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 64 PAVRGIEPRPCKGHSAVLLNE-DRILVIKKGSSSDDCLWFL 103
PA + C AV L+E D +L+I++ W+L
Sbjct: 10 PAPVRLRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYL 50
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 28.4 bits (64), Expect = 4.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 136 VVITGPSGVGKGTLISML 153
+++ GPSG GK T + M+
Sbjct: 32 MILLGPSGCGKTTTLRMI 49
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 28.7 bits (65), Expect = 4.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 136 VVITGPSGVGKGTLISMLM 154
+ GPSG GK T++S+L+
Sbjct: 373 TALVGPSGSGKSTVLSLLL 391
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 28.2 bits (62), Expect = 4.5
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 2/86 (2%)
Query: 137 VITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTE--RSVMEKAI 194
TG G GK T+ + + H R H + V+++A+
Sbjct: 71 SFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM 130
Query: 195 KDGKFLEFASVHGNLYGTSVEAVEAV 220
F++ A EA+
Sbjct: 131 GGVLFIDEAYYLYRPDNERDYGQEAI 156
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 28.3 bits (64), Expect = 4.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 136 VVITGPSGVGKGTLISML 153
+ + GPSG GK TL+ +
Sbjct: 32 MALLGPSGSGKSTLLYTI 49
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A
{Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A*
1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 27.9 bits (63), Expect = 4.5
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 136 VVITGPSGVGKGTLISMLMKEF 157
+++ G GKGT +M+++
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKY 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 28.3 bits (64), Expect = 4.5
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 26/95 (27%)
Query: 43 AGSDESIGVKIYDRSTGNWLIPAVRGIEPRPCKGHS----AVLLNED-RILVIKKGSSSD 97
G D I +I+ +W+ + +GH V + L S+S
Sbjct: 34 CGGDRRI--RIWGTEGDSWI------CKSVLSEGHQRTVRKVAWSPCGNYLA----SASF 81
Query: 98 D---CLWFLEVDTPYVREQKKVVG--AEV--VAWS 125
D C+W + + + G EV VAW+
Sbjct: 82 DATTCIW--KKNQDDFECVTTLEGHENEVKSVAWA 114
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 28.4 bits (64), Expect = 4.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 136 VVITGPSGVGKGTLISML 153
I GPSG GK T + ++
Sbjct: 34 FGILGPSGAGKTTFMRII 51
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 27.9 bits (63), Expect = 4.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 136 VVITGPSGVGKGTLISML 153
V I GPSG GK T+++++
Sbjct: 34 VSIMGPSGSGKSTMLNII 51
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 28.0 bits (63), Expect = 4.7
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 136 VVITGPSGVGKGTLISMLMKEF 157
+ G G GKGT L K
Sbjct: 32 YIFLGAPGSGKGTQSLNLKKSH 53
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 28.4 bits (64), Expect = 4.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 136 VVITGPSGVGKGTLISML 153
+V+ GPSG GK T + M+
Sbjct: 40 LVLLGPSGCGKTTTLRMI 57
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, ADP, DCMP, D
transferase; 2.00A {Mycobacterium smegmatis} PDB: 3r8c_A
4die_A*
Length = 233
Score = 27.8 bits (63), Expect = 4.8
Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 133 EKPVVIT--GPSGVGKGTL 149
+V+ GP+G GK ++
Sbjct: 7 SGSLVVAVDGPAGTGKSSV 25
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 28.3 bits (64), Expect = 4.8
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 11/40 (27%)
Query: 257 EELEERLRARGTETE-----------DQILKRLRNAKEEI 285
EE+ R+ A G D I+ R ++
Sbjct: 371 EEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKV 410
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 27.9 bits (63), Expect = 4.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 136 VVITGPSGVGKGTLISMLMKEF 157
+++ G G GKGT + KE+
Sbjct: 8 LILIGAPGSGKGTQCEFIKKEY 29
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 27.8 bits (63), Expect = 5.0
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 134 KPVVIT--GPSGVGKGTL 149
K + I GP+ GK T+
Sbjct: 15 KTIQIAIDGPASSGKSTV 32
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 27.9 bits (63), Expect = 5.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 136 VVITGPSGVGKGTLISML 153
V I G SG GK TL+ +L
Sbjct: 33 VSIIGASGSGKSTLLYIL 50
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 27.8 bits (63), Expect = 5.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 136 VVITGPSGVGKGTLISML 153
+ I G SG GK TL ++
Sbjct: 38 IGIVGRSGSGKSTLTKLI 55
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase;
HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A*
2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A*
3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A*
2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Length = 367
Score = 28.3 bits (64), Expect = 5.3
Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 272 DQILKRLRNAKEEIKQGKSSGIFDHI---LYNDKLEECYENLKKHLGLDGSIATN 323
++L ++ ++ +++ + I L + E+ +K+ G+DG I TN
Sbjct: 202 RRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKEL-GIDGLIVTN 255
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 27.9 bits (63), Expect = 5.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFG 162
+ + G +G GK +L+ M+M E G
Sbjct: 37 LAVAGSTGAGKTSLLMMIMGELEPSEG 63
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 27.9 bits (62), Expect = 5.5
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 106 DTPYVREQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV 165
D + + ++ + + +K + + G G+GK L++ + E G S
Sbjct: 125 DIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVST 184
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 27.7 bits (62), Expect = 5.6
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 136 VVITGPSGVGKGTLISMLMK-EFPSMFGF 163
++I G +G GK TL+ LMK + +
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQ 33
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 27.9 bits (63), Expect = 5.8
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 136 VVITGPSGVGKGTLI 150
+ I G SG GK T +
Sbjct: 35 ISIIGSSGSGKSTFL 49
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 28.0 bits (63), Expect = 5.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 136 VVITGPSGVGKGTLISML 153
+ + GPSG GK T++ +L
Sbjct: 83 LALVGPSGAGKSTILRLL 100
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A
{Staphylococcus aureus}
Length = 219
Score = 27.8 bits (63), Expect = 6.1
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 134 KPVVIT--GPSGVGKGTL 149
K + I GP+ GK T+
Sbjct: 2 KAINIALDGPAAAGKSTI 19
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 27.5 bits (62), Expect = 6.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 136 VVITGPSGVGKGTLISMLMKEF 157
+V+ GP G GKGT L + F
Sbjct: 7 MVLIGPPGAGKGTQAPNLQERF 28
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 27.5 bits (62), Expect = 6.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 136 VVITGPSGVGKGTLISMLMKEF 157
V+ GP G GKGT L K F
Sbjct: 19 AVLLGPPGAGKGTQAPKLAKNF 40
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 27.8 bits (61), Expect = 6.4
Identities = 26/170 (15%), Positives = 50/170 (29%), Gaps = 24/170 (14%)
Query: 133 EKPVVIT--GPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190
K ++IT G G + L +E G A EK V F
Sbjct: 12 NKNLIITIEREYGSGGRIVGKKLAEE----LGIHFYDDDILKLASEKSAVGEQFFRL-AD 66
Query: 191 EKAIKDGKFLEFASVHGNLYGTS----------------VEAVEAVADAGKRCILDIDVQ 234
EKA + + +L+ E + +A++ +
Sbjct: 67 EKAGNNLLYRLGGGRKIDLHSKPSPNDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAG 126
Query: 235 GARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284
I IF+ + +R+ E++ +R++ ++E
Sbjct: 127 YVLDQDEDIERLIRIFVYTD-KVKKVQRVMEVDCIDEERAKRRIKKIEKE 175
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase,
TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9
b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Length = 687
Score = 28.0 bits (62), Expect = 6.5
Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 19/106 (17%)
Query: 106 DTPYVREQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV 165
D P+V + V A+VV W + G+V K I VG IS +
Sbjct: 389 DAPFVFAE---VNADVVDWIQQDDGSVHK--SINRSLIVGL--KISTKSVGRDERE--DI 439
Query: 166 SHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFL--EFASVHGNL 209
+HT + P + ER +A K E + +
Sbjct: 440 THTYKYPEGSSE--------EREAFTRANHLNKLAEKEETGMAMRI 477
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 27.6 bits (62), Expect = 6.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 138 ITGPSGVGKGTLISMLMK 155
I SGVGK TL+ M+
Sbjct: 76 IFAGSGVGKSTLLGMICN 93
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 26.9 bits (59), Expect = 6.7
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 253 PPSMEELEERLRA---RGTETEDQILKRLRNAKEEIKQ 287
PS+EE++++L A R E ++LK L +E ++
Sbjct: 42 DPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHERE 79
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase;
2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB:
1tz3_A* 1tz6_A*
Length = 339
Score = 27.6 bits (62), Expect = 6.8
Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 15/109 (13%)
Query: 193 AIKDGKFLEFASV---HGNLYGTSVEAVEAVADAGKRCILDIDV-----QGARSVRASPL 244
+ ++ F+S+ +E + +AG + D+++ +
Sbjct: 138 PFRQYEWFYFSSIGLTDRPAREACLEGARRMREAGGYVLFDVNLRSKMWGNTDEIPELIA 197
Query: 245 DAIFIF-ICPPSMEELEERLRARGTETEDQILKRLRNAKEE---IKQGK 289
+ + IC S +EL + G LR+ + I G
Sbjct: 198 RSAALASICKVSADELC---QLSGASHWQDARYYLRDLGCDTTIISLGA 243
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 27.3 bits (61), Expect = 6.9
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 133 EKPVV--ITGPSGVGKGTLISMLMKEFP 158
+V I G S GK TL + L +
Sbjct: 20 AGRLVLGIDGLSRSGKTTLANQLSQTLR 47
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 27.8 bits (61), Expect = 6.9
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSH 167
+ G G GK + L + + +
Sbjct: 47 ATLLGRPGTGKTVTLRKLWELYKDKTTARFVY 78
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 27.9 bits (63), Expect = 7.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 136 VVITGPSGVGKGTLISML 153
VV GPSG GK TL+ M+
Sbjct: 32 VVFVGPSGCGKSTLLRMI 49
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 27.6 bits (62), Expect = 7.4
Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 19/72 (26%)
Query: 37 DKTYVIAGSDESIGVKIYDRSTGNWLIPAVRGIEPRPCKGHS----AVLLNEDRILVIKK 92
Y+IAG + + YD S + H + + D I
Sbjct: 186 KGKYIIAGHKDGK-ISKYDVSNNYEYV--------DSIDLHEKSISDMQFSPDLTYFI-- 234
Query: 93 GSSSDD---CLW 101
+SS D L
Sbjct: 235 -TSSRDTNSFLV 245
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 27.8 bits (61), Expect = 7.7
Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 8/129 (6%)
Query: 38 KTYVIAGSDESIGVKIYDRSTGNWLIPAVR-----GIEPRPCKGHSAVLLNEDRILVIKK 92
K + + D ++ WL+ G+ + + LL D +I
Sbjct: 64 KDTAAIDLETRQKFGVLDVASKRWLVKPSAKNHAWGVVETHARKYHVALLEHDEFGII-- 121
Query: 93 GSSSDDCLWFLEVDTPYVREQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISM 152
+ + + ++ + K+ + + K V++ G G GK I
Sbjct: 122 -TCDNWRRVAVSSESVVYSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILS 180
Query: 153 LMKEFPSMF 161
+ +
Sbjct: 181 RVNFEEDLI 189
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 27.8 bits (62), Expect = 7.7
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 27/102 (26%)
Query: 37 DKTYVIAGSDESIGVKIYDRSTGNWLIPAVRGIEPRPCKGHS----AVLLNED-RILVIK 91
+T + + + V++Y++ W H V +V
Sbjct: 22 QRTEFVTTTATNQ-VELYEQDGNGWKHAR-------TFSDHDKIVTCVDWAPKSNRIV-- 71
Query: 92 KGSSSDD---CLWFLEVDTPYVREQKKVV-----GAEVVAWS 125
+ S D ++ E +Q V+ A V WS
Sbjct: 72 --TCSQDRNAYVY--EKRPDGTWKQTLVLLRLNRAATFVRWS 109
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1
b.69.4.1
Length = 435
Score = 27.7 bits (62), Expect = 7.8
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 15/73 (20%)
Query: 37 DKTYVIAGS-DESIGVKIYDRSTGNWLIPAVRGIEPRPCKGHS----AVLLNEDRILVIK 91
D +++G+ D I K++D + R HS + +E +I+
Sbjct: 345 DNKRIVSGAYDGKI--KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIV--- 399
Query: 92 KGSSSDDC---LW 101
SSS D +W
Sbjct: 400 --SSSHDDTILIW 410
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 27.6 bits (62), Expect = 8.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMF 161
K +++ GP+GVGK + L K + F
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLAKLANAPF 78
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 27.1 bits (61), Expect = 8.6
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 134 KPVVITGPSGVGKGTLISML 153
+ G +G GK T+ +L
Sbjct: 47 TTCALVGHTGSGKSTIAKLL 66
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 27.4 bits (61), Expect = 9.1
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 16/96 (16%)
Query: 86 RILVIKKGSSSDDCLWFLEVDTP--YVREQKKVVGAEVVAWSKGVIGNVEKPVVITGPSG 143
+L + + W + EQ V+ + VV+TG G
Sbjct: 165 TLLATPPADGAGNDDWAVPKKARKGLSEEQASVLDQ---LAGHRL-------VVLTGGPG 214
Query: 144 VGKGTLISMLMKEFPSMFGFSVS---HTTRAPRAME 176
GK T + S+ G V T +A R +
Sbjct: 215 TGKSTTTKAVADLAESL-GLEVGLCAPTGKAARRLG 249
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 27.5 bits (62), Expect = 9.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 136 VVITGPSGVGKGTLIS 151
+TG SG GK TL+S
Sbjct: 526 TSVTGVSGSGKSTLVS 541
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 27.2 bits (60), Expect = 9.9
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query: 109 YVREQKKVVGAEVVAWSKG-----VIGNVEKP-------VVITGPSGVGKGTLISMLM 154
++R + V G ++ ++ + V P +++ G +G GK L+ L
Sbjct: 17 FLRGTRIVSGGKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELA 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.389
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,157,349
Number of extensions: 387334
Number of successful extensions: 1869
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1809
Number of HSP's successfully gapped: 245
Length of query: 399
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 303
Effective length of database: 4,021,377
Effective search space: 1218477231
Effective search space used: 1218477231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.7 bits)