Query 015826
Match_columns 399
No_of_seqs 344 out of 2403
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 01:15:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02795 allantoinase 100.0 6.9E-65 1.5E-69 505.8 40.0 395 1-398 1-396 (505)
2 COG0044 PyrC Dihydroorotase an 100.0 6E-64 1.3E-68 483.9 33.9 330 43-398 1-330 (430)
3 PRK07369 dihydroorotase; Provi 100.0 5.9E-63 1.3E-67 481.5 34.9 331 42-398 1-334 (418)
4 PRK07627 dihydroorotase; Provi 100.0 4.9E-61 1.1E-65 469.4 34.7 330 43-398 1-333 (425)
5 PRK09059 dihydroorotase; Valid 100.0 4.2E-60 9.1E-65 463.3 33.7 334 42-398 2-338 (429)
6 PRK08417 dihydroorotase; Provi 100.0 2.8E-59 6E-64 453.0 30.6 300 63-398 1-302 (386)
7 PRK13404 dihydropyrimidinase; 100.0 2.8E-58 6E-63 456.7 36.2 335 42-398 3-352 (477)
8 PRK06189 allantoinase; Provisi 100.0 2.7E-57 5.9E-62 448.4 37.0 336 42-398 2-340 (451)
9 PRK08044 allantoinase; Provisi 100.0 2.8E-56 6.2E-61 439.5 36.4 337 42-398 2-342 (449)
10 TIGR03178 allantoinase allanto 100.0 6.4E-56 1.4E-60 438.2 36.5 334 44-398 1-337 (443)
11 cd01315 L-HYD_ALN L-Hydantoina 100.0 2.8E-55 6.1E-60 435.1 37.1 340 44-398 1-340 (447)
12 PRK02382 dihydroorotase; Provi 100.0 3.3E-55 7.2E-60 432.5 33.4 328 42-398 1-329 (443)
13 PLN02942 dihydropyrimidinase 100.0 1.6E-54 3.5E-59 431.5 35.3 338 42-397 4-348 (486)
14 PRK01211 dihydroorotase; Provi 100.0 1.1E-54 2.3E-59 420.6 29.6 299 47-398 3-301 (409)
15 TIGR00857 pyrC_multi dihydroor 100.0 4.6E-54 9.9E-59 420.5 32.9 313 59-398 4-319 (411)
16 PRK08323 phenylhydantoinase; V 100.0 2.1E-53 4.6E-58 423.2 36.2 336 43-398 1-343 (459)
17 PRK09060 dihydroorotase; Valid 100.0 1.6E-53 3.4E-58 419.8 34.7 324 43-398 5-332 (444)
18 PRK07575 dihydroorotase; Provi 100.0 1.8E-53 4E-58 418.9 34.7 328 42-398 2-330 (438)
19 cd01314 D-HYD D-hydantoinases 100.0 5.7E-53 1.2E-57 418.6 34.9 338 45-398 1-343 (447)
20 KOG2584 Dihydroorotase and rel 100.0 5.2E-53 1.1E-57 386.4 27.2 340 43-398 14-361 (522)
21 PRK09357 pyrC dihydroorotase; 100.0 2.6E-52 5.7E-57 410.9 34.4 328 44-398 2-331 (423)
22 TIGR02033 D-hydantoinase D-hyd 100.0 3.1E-52 6.7E-57 414.6 34.7 338 45-398 1-345 (454)
23 PRK09236 dihydroorotase; Revie 100.0 2.4E-51 5.2E-56 405.2 35.0 335 42-398 1-336 (444)
24 PRK04250 dihydroorotase; Provi 100.0 6.6E-51 1.4E-55 394.4 29.3 293 48-398 2-295 (398)
25 cd01318 DHOase_IIb Dihydroorot 100.0 3.7E-50 7.9E-55 385.1 26.9 275 93-398 1-275 (361)
26 PRK00369 pyrC dihydroorotase; 100.0 3.1E-49 6.7E-54 380.5 27.5 273 60-398 13-286 (392)
27 cd01302 Cyclic_amidohydrolases 100.0 8.4E-49 1.8E-53 373.3 25.6 254 94-398 1-255 (337)
28 cd01317 DHOase_IIa Dihydroorot 100.0 2.9E-48 6.4E-53 375.4 28.8 290 86-398 2-292 (374)
29 cd01316 CAD_DHOase The eukaryo 100.0 3E-45 6.6E-50 347.3 24.8 248 94-398 2-249 (344)
30 cd01294 DHOase Dihydroorotase 100.0 8.3E-43 1.8E-47 332.5 24.2 245 96-378 2-252 (335)
31 PRK09061 D-glutamate deacylase 100.0 2.8E-39 6.1E-44 322.5 27.9 293 42-395 18-393 (509)
32 PLN02599 dihydroorotase 100.0 2.6E-39 5.6E-44 307.0 23.8 256 95-396 23-287 (364)
33 TIGR00856 pyrC_dimer dihydroor 100.0 3.3E-39 7.2E-44 306.0 22.7 261 95-398 2-270 (341)
34 PRK05451 dihydroorotase; Provi 100.0 4.8E-38 1E-42 299.6 22.1 263 95-395 5-277 (345)
35 cd01297 D-aminoacylase D-amino 100.0 1.5E-36 3.2E-41 297.6 24.8 259 44-373 1-311 (415)
36 TIGR02318 phosphono_phnM phosp 100.0 4.8E-32 1E-36 261.1 22.2 284 46-373 1-305 (376)
37 PRK15446 phosphonate metabolis 100.0 5E-32 1.1E-36 261.8 22.4 288 42-373 1-310 (383)
38 PRK12394 putative metallo-depe 99.9 3.3E-23 7.1E-28 201.0 24.5 256 42-373 2-280 (379)
39 PRK10657 isoaspartyl dipeptida 99.9 3E-23 6.4E-28 202.4 23.8 287 43-397 1-310 (388)
40 PRK13206 ureC urease subunit a 99.9 3.6E-23 7.7E-28 203.3 22.6 213 42-312 70-299 (573)
41 PRK13308 ureC urease subunit a 99.9 6.8E-23 1.5E-27 200.4 23.8 174 42-235 67-252 (569)
42 PRK13207 ureC urease subunit a 99.9 9.1E-23 2E-27 200.9 24.6 214 42-313 66-294 (568)
43 PRK13985 ureB urease subunit b 99.9 9.1E-23 2E-27 198.7 24.3 213 42-312 64-293 (568)
44 cd00375 Urease_alpha Urease al 99.9 1.3E-22 2.8E-27 198.4 24.6 174 42-235 64-252 (567)
45 PRK07228 N-ethylammeline chlor 99.9 1.2E-23 2.7E-28 208.5 17.9 268 43-373 1-311 (445)
46 cd01308 Isoaspartyl-dipeptidas 99.9 1.8E-22 3.9E-27 196.8 24.8 112 45-158 2-116 (387)
47 PRK13309 ureC urease subunit a 99.9 6.1E-22 1.3E-26 195.6 25.2 174 42-235 67-256 (572)
48 TIGR01792 urease_alph urease, 99.9 9.7E-22 2.1E-26 194.0 20.8 174 42-235 65-251 (567)
49 cd01298 ATZ_TRZ_like TRZ/ATZ f 99.9 2.7E-21 5.8E-26 190.1 22.9 266 45-372 1-305 (411)
50 PRK15493 5-methylthioadenosine 99.9 2.6E-20 5.7E-25 183.7 23.9 186 43-235 1-222 (435)
51 PRK06687 chlorohydrolase; Vali 99.9 2.7E-20 5.8E-25 183.3 23.0 180 45-233 2-218 (419)
52 cd01293 Bact_CD Bacterial cyto 99.9 2.5E-19 5.5E-24 175.3 25.6 268 47-370 2-309 (398)
53 PLN02303 urease 99.8 5.9E-20 1.3E-24 185.5 20.2 174 42-235 333-521 (837)
54 TIGR01975 isoAsp_dipep isoaspa 99.8 6.3E-19 1.4E-23 170.0 25.4 264 45-370 2-288 (389)
55 PRK09045 N-ethylammeline chlor 99.8 2.8E-19 6E-24 177.2 22.7 179 43-232 7-223 (443)
56 PRK07203 putative chlorohydrol 99.8 4.6E-19 9.9E-24 175.6 23.7 186 45-236 2-231 (442)
57 PRK14085 imidazolonepropionase 99.8 2.5E-19 5.5E-24 174.1 20.9 177 43-233 1-229 (382)
58 TIGR01178 ade adenine deaminas 99.8 6E-19 1.3E-23 176.9 24.0 174 44-234 1-185 (552)
59 PRK05985 cytosine deaminase; P 99.8 1.2E-18 2.6E-23 170.0 25.4 259 42-370 1-298 (391)
60 COG3964 Predicted amidohydrola 99.8 3E-19 6.4E-24 158.1 18.8 251 41-313 2-266 (386)
61 PRK09237 dihydroorotase; Provi 99.8 7E-19 1.5E-23 171.0 22.7 248 45-313 1-262 (380)
62 PRK08203 hydroxydechloroatrazi 99.8 8.4E-19 1.8E-23 174.2 22.8 181 45-232 4-235 (451)
63 COG3653 N-acyl-D-aspartate/D-g 99.8 3.7E-19 8.1E-24 164.2 18.4 241 42-325 5-313 (579)
64 PRK07583 cytosine deaminase-li 99.8 1.4E-18 3.1E-23 171.6 23.9 268 43-370 11-333 (438)
65 PRK06380 metal-dependent hydro 99.8 1.6E-18 3.4E-23 170.7 23.6 176 43-233 1-208 (418)
66 TIGR03314 Se_ssnA putative sel 99.8 1.2E-18 2.6E-23 172.2 22.5 274 45-372 1-315 (441)
67 cd01307 Met_dep_hydrolase_B Me 99.8 8.5E-19 1.8E-23 167.6 20.1 163 62-236 1-174 (338)
68 PRK06151 N-ethylammeline chlor 99.8 4.8E-19 1E-23 177.3 18.9 182 44-232 2-242 (488)
69 PRK12393 amidohydrolase; Provi 99.8 4.4E-18 9.5E-23 169.0 24.5 184 42-232 1-239 (457)
70 PRK08204 hypothetical protein; 99.8 7.1E-18 1.5E-22 167.7 25.8 263 42-372 1-305 (449)
71 COG0418 PyrC Dihydroorotase [N 99.8 8.3E-18 1.8E-22 149.3 22.3 247 95-378 5-258 (344)
72 PRK09356 imidazolonepropionase 99.8 4.4E-18 9.6E-23 167.0 22.2 184 42-233 2-244 (406)
73 PRK08393 N-ethylammeline chlor 99.8 9.1E-18 2E-22 165.4 22.8 176 43-232 1-210 (424)
74 PRK07572 cytosine deaminase; V 99.8 2.9E-17 6.2E-22 161.9 25.9 271 42-370 1-311 (426)
75 PRK07213 chlorohydrolase; Prov 99.8 1E-17 2.2E-22 162.3 21.2 167 45-233 2-201 (375)
76 TIGR02967 guan_deamin guanine 99.8 3.8E-17 8.2E-22 160.1 23.2 171 59-235 5-212 (401)
77 cd01299 Met_dep_hydrolase_A Me 99.8 1.6E-18 3.4E-23 166.4 13.0 142 87-234 2-183 (342)
78 PRK06038 N-ethylammeline chlor 99.8 4.7E-17 1E-21 160.5 22.7 180 42-235 1-214 (430)
79 PRK09230 cytosine deaminase; P 99.8 2.9E-16 6.2E-21 154.4 28.0 271 43-370 4-315 (426)
80 TIGR03583 EF_0837 probable ami 99.8 7.6E-17 1.7E-21 155.9 23.1 179 43-236 1-190 (365)
81 PRK09228 guanine deaminase; Pr 99.8 5.1E-17 1.1E-21 160.2 22.2 169 59-236 30-238 (433)
82 PRK08418 chlorohydrolase; Prov 99.8 3.3E-17 7.1E-22 160.2 18.8 181 45-238 2-218 (408)
83 cd01303 GDEase Guanine deamina 99.7 1.5E-16 3.3E-21 156.8 21.4 168 59-235 25-234 (429)
84 COG0402 SsnA Cytosine deaminas 99.7 2.4E-16 5.3E-21 155.1 21.9 270 43-374 2-311 (421)
85 PRK06846 putative deaminase; V 99.7 9.8E-16 2.1E-20 150.3 26.0 245 59-370 30-313 (410)
86 cd01296 Imidazolone-5PH Imidaz 99.7 1.6E-16 3.4E-21 154.2 19.8 163 63-233 1-215 (371)
87 PRK10027 cryptic adenine deami 99.7 7E-16 1.5E-20 155.1 23.0 228 43-309 30-271 (588)
88 TIGR01224 hutI imidazoloneprop 99.7 4E-16 8.6E-21 151.7 19.8 51 59-110 2-52 (377)
89 cd00854 NagA N-acetylglucosami 99.7 1E-16 2.2E-21 155.2 15.4 184 45-242 1-205 (374)
90 COG1228 HutI Imidazolonepropio 99.7 4.7E-17 1E-21 157.3 11.8 66 43-111 10-77 (406)
91 COG1574 Predicted metal-depend 99.7 2.8E-16 6E-21 155.5 17.0 67 41-107 3-72 (535)
92 KOG2902 Dihydroorotase [Nucleo 99.7 7.2E-16 1.6E-20 132.4 15.9 245 96-378 6-255 (344)
93 TIGR00221 nagA N-acetylglucosa 99.7 9.8E-16 2.1E-20 147.4 16.9 188 43-242 3-210 (380)
94 cd01313 Met_dep_hydrolase_E Me 99.7 1.7E-15 3.8E-20 148.8 19.0 165 54-232 3-227 (418)
95 COG1001 AdeC Adenine deaminase 99.7 5.3E-15 1.1E-19 143.8 19.4 245 40-330 21-279 (584)
96 cd01312 Met_dep_hydrolase_D Me 99.7 4.8E-15 1E-19 143.6 18.8 158 68-237 1-190 (381)
97 PF13594 Amidohydro_5: Amidohy 99.7 3.6E-16 7.9E-21 112.7 7.6 68 63-133 1-68 (68)
98 PRK09229 N-formimino-L-glutama 99.6 3.9E-15 8.4E-20 148.0 17.1 179 42-232 2-236 (456)
99 cd01300 YtcJ_like YtcJ_like me 99.6 1.3E-14 2.8E-19 145.5 19.8 122 206-372 290-414 (479)
100 TIGR02022 hutF formiminoglutam 99.6 2.9E-14 6.4E-19 141.5 19.8 84 46-137 5-121 (455)
101 PRK11170 nagA N-acetylglucosam 99.6 1.4E-14 3E-19 139.8 16.8 184 45-242 2-208 (382)
102 COG0804 UreC Urea amidohydrola 99.6 7.6E-14 1.7E-18 128.4 19.2 172 42-235 66-252 (568)
103 COG3454 Metal-dependent hydrol 99.6 2.9E-13 6.3E-18 121.7 19.3 149 46-199 2-165 (377)
104 cd01304 FMDH_A Formylmethanofu 99.6 4.6E-13 1E-17 131.5 22.5 236 47-322 1-304 (541)
105 TIGR03121 one_C_dehyd_A formyl 99.6 6.4E-13 1.4E-17 131.1 23.0 176 45-233 2-237 (556)
106 cd01292 metallo-dependent_hydr 99.5 7.9E-13 1.7E-17 121.9 16.1 212 100-372 1-238 (275)
107 cd01295 AdeC Adenine deaminase 99.5 3.9E-12 8.4E-17 125.2 19.9 136 90-235 1-145 (422)
108 KOG3968 Atrazine chlorohydrola 99.4 8.4E-13 1.8E-17 123.0 9.7 256 60-373 27-334 (439)
109 COG1820 NagA N-acetylglucosami 99.3 7.6E-11 1.6E-15 110.5 16.9 86 45-134 2-92 (380)
110 PF13147 Amidohydro_4: Amidohy 99.3 3.2E-11 6.9E-16 112.5 13.9 239 90-373 1-249 (304)
111 cd01309 Met_dep_hydrolase_C Me 99.2 2.2E-10 4.7E-15 110.5 16.3 68 67-137 1-91 (359)
112 PF12890 DHOase: Dihydro-orota 99.2 8.9E-12 1.9E-16 97.9 4.6 140 93-298 1-140 (142)
113 COG1229 FwdA Formylmethanofura 99.1 1.2E-09 2.6E-14 101.3 14.2 64 42-110 2-68 (575)
114 cd01305 archeal_chlorohydrolas 99.1 2.7E-09 5.9E-14 98.4 13.3 21 213-233 127-147 (263)
115 cd01306 PhnM PhnM is believed 99.0 3.8E-08 8.2E-13 92.7 19.1 211 97-373 1-259 (325)
116 PRK06886 hypothetical protein; 98.9 2.1E-07 4.6E-12 87.8 18.7 199 121-370 74-282 (329)
117 PF01979 Amidohydro_1: Amidohy 98.5 1.2E-07 2.6E-12 90.4 5.4 43 95-137 1-50 (333)
118 cd01310 TatD_DNAse TatD like p 98.3 2.9E-05 6.2E-10 70.9 16.3 123 100-233 1-130 (251)
119 KOG3892 N-acetyl-glucosamine-6 98.1 6.8E-06 1.5E-10 72.8 5.7 91 45-136 14-110 (407)
120 TIGR00010 hydrolase, TatD fami 98.0 9.9E-05 2.2E-09 67.4 12.9 123 100-233 1-130 (252)
121 PRK10812 putative DNAse; Provi 98.0 0.00026 5.6E-09 65.1 14.9 126 100-233 3-133 (265)
122 COG0084 TatD Mg-dependent DNas 97.9 0.00044 9.5E-09 62.8 15.3 127 100-235 3-136 (256)
123 PRK11449 putative deoxyribonuc 97.9 0.00031 6.8E-09 64.4 14.1 127 98-233 3-136 (258)
124 PRK10425 DNase TatD; Provision 97.9 0.00039 8.6E-09 63.7 14.2 125 100-233 1-130 (258)
125 cd00530 PTE Phosphotriesterase 97.8 0.00095 2.1E-08 62.5 16.5 110 209-369 134-245 (293)
126 PF01026 TatD_DNase: TatD rela 97.8 0.00035 7.7E-09 64.1 11.7 124 101-233 1-133 (255)
127 cd01311 PDC_hydrolase 2-pyrone 97.5 0.0099 2.2E-07 54.7 18.0 122 99-233 1-132 (263)
128 COG1099 Predicted metal-depend 97.4 0.0079 1.7E-07 52.4 14.0 120 100-231 2-134 (254)
129 PRK09358 adenosine deaminase; 97.4 0.024 5.2E-07 54.3 19.1 26 208-233 179-204 (340)
130 PF00449 Urease_alpha: Urease 97.3 0.00043 9.3E-09 53.3 5.2 36 42-77 65-100 (121)
131 PF04909 Amidohydro_2: Amidohy 97.2 0.0025 5.5E-08 58.6 10.3 110 175-321 83-198 (273)
132 cd01320 ADA Adenosine deaminas 97.2 0.035 7.5E-07 52.8 18.0 25 208-232 170-194 (325)
133 PRK09875 putative hydrolase; P 96.7 0.11 2.5E-06 48.3 16.2 104 209-371 137-246 (292)
134 TIGR01430 aden_deam adenosine 96.6 0.18 3.8E-06 48.0 17.6 27 207-233 168-194 (324)
135 PF02126 PTE: Phosphotriestera 96.2 0.054 1.2E-06 50.9 11.1 221 99-371 7-260 (308)
136 COG2159 Predicted metal-depend 95.9 0.67 1.5E-05 43.3 16.6 110 178-321 114-226 (293)
137 PF07969 Amidohydro_3: Amidohy 95.8 0.069 1.5E-06 52.3 10.5 185 122-370 136-335 (404)
138 COG1735 Php Predicted metal-de 94.8 1.9 4.2E-05 39.8 15.3 74 209-319 150-224 (316)
139 PF07969 Amidohydro_3: Amidohy 91.8 0.061 1.3E-06 52.7 0.7 15 95-109 1-15 (404)
140 COG1831 Predicted metal-depend 91.4 11 0.00024 34.3 16.3 27 209-235 143-169 (285)
141 TIGR01496 DHPS dihydropteroate 91.4 3.3 7.2E-05 37.9 11.5 67 176-243 23-94 (257)
142 COG3618 Predicted metal-depend 90.9 5.2 0.00011 36.7 12.0 27 208-234 121-147 (279)
143 PRK01060 endonuclease IV; Prov 90.3 13 0.00029 34.2 14.8 119 178-322 14-149 (281)
144 cd01308 Isoaspartyl-dipeptidas 90.2 15 0.00032 35.7 15.7 104 258-370 163-286 (387)
145 PF00962 A_deaminase: Adenosin 90.0 4.2 9.1E-05 38.6 11.5 102 211-369 180-281 (331)
146 PRK13352 thiamine biosynthesis 89.6 14 0.00031 35.7 14.1 53 268-328 207-274 (431)
147 smart00518 AP2Ec AP endonuclea 89.5 17 0.00036 33.3 15.0 118 179-322 13-143 (273)
148 COG0826 Collagenase and relate 89.2 5.5 0.00012 38.1 11.3 53 177-229 14-67 (347)
149 cd00443 ADA_AMPD Adenosine/AMP 86.8 28 0.0006 32.7 15.5 25 209-233 151-176 (305)
150 COG5016 Pyruvate/oxaloacetate 86.2 10 0.00022 36.6 10.8 107 119-236 101-211 (472)
151 PTZ00124 adenosine deaminase; 85.2 30 0.00066 33.4 14.0 108 211-372 206-313 (362)
152 cd01321 ADGF Adenosine deamina 84.4 4.9 0.00011 38.5 8.2 111 209-372 177-289 (345)
153 COG4464 CapC Capsular polysacc 84.3 2.3 5E-05 37.2 5.2 38 100-137 1-41 (254)
154 PRK14042 pyruvate carboxylase 82.7 14 0.0003 38.2 11.0 107 119-236 99-209 (596)
155 PRK12330 oxaloacetate decarbox 82.6 13 0.00028 37.5 10.5 106 119-236 100-212 (499)
156 PRK12581 oxaloacetate decarbox 82.4 31 0.00068 34.4 13.0 106 120-236 109-218 (468)
157 cd00951 KDGDH 5-dehydro-4-deox 81.6 31 0.00066 32.1 12.3 108 115-231 20-132 (289)
158 PTZ00372 endonuclease 4-like p 80.7 61 0.0013 31.9 16.8 71 160-233 128-201 (413)
159 TIGR00190 thiC thiamine biosyn 79.0 65 0.0014 31.3 13.3 24 303-327 247-270 (423)
160 cd00019 AP2Ec AP endonuclease 77.5 58 0.0013 29.9 16.8 119 179-323 13-147 (279)
161 PRK14040 oxaloacetate decarbox 76.4 40 0.00087 34.9 12.1 107 119-236 100-210 (593)
162 cd07944 DRE_TIM_HOA_like 4-hyd 75.0 62 0.0014 29.7 12.0 104 121-235 87-194 (266)
163 TIGR01431 adm_rel adenosine de 74.9 18 0.00039 36.4 9.0 65 291-372 351-415 (479)
164 PRK12331 oxaloacetate decarbox 74.3 52 0.0011 32.8 11.9 106 120-236 100-209 (448)
165 COG1816 Add Adenosine deaminas 73.4 19 0.00042 34.3 8.3 109 208-373 182-290 (345)
166 cd00952 CHBPH_aldolase Trans-o 73.3 27 0.00058 32.9 9.4 52 179-233 32-86 (309)
167 PRK03620 5-dehydro-4-deoxygluc 73.1 60 0.0013 30.4 11.7 108 115-231 27-139 (303)
168 PRK14041 oxaloacetate decarbox 72.7 73 0.0016 31.9 12.5 106 120-236 99-208 (467)
169 cd07943 DRE_TIM_HOA 4-hydroxy- 72.6 66 0.0014 29.4 11.6 105 120-235 89-196 (263)
170 cd00953 KDG_aldolase KDG (2-ke 72.2 82 0.0018 29.1 12.5 109 114-230 18-127 (279)
171 TIGR00284 dihydropteroate synt 71.9 97 0.0021 31.4 13.2 116 178-319 167-287 (499)
172 PLN02417 dihydrodipicolinate s 71.1 64 0.0014 29.9 11.2 110 115-230 21-131 (280)
173 PRK08392 hypothetical protein; 71.1 73 0.0016 28.1 15.9 175 101-322 1-184 (215)
174 TIGR00587 nfo apurinic endonuc 70.8 87 0.0019 28.8 14.8 117 179-322 14-147 (274)
175 PRK08195 4-hyroxy-2-oxovalerat 70.7 72 0.0016 30.5 11.7 103 121-235 93-200 (337)
176 TIGR03249 KdgD 5-dehydro-4-deo 70.6 64 0.0014 30.1 11.2 109 114-231 24-137 (296)
177 TIGR01108 oadA oxaloacetate de 70.2 70 0.0015 33.1 12.1 107 119-236 94-204 (582)
178 cd00408 DHDPS-like Dihydrodipi 69.7 86 0.0019 28.8 11.9 112 114-230 16-129 (281)
179 cd00950 DHDPS Dihydrodipicolin 69.3 75 0.0016 29.3 11.4 110 116-230 21-132 (284)
180 PF00834 Ribul_P_3_epim: Ribul 68.0 84 0.0018 27.5 10.8 99 178-322 14-115 (201)
181 PRK09490 metH B12-dependent me 67.4 1.6E+02 0.0034 33.5 14.7 60 179-243 387-450 (1229)
182 PRK09282 pyruvate carboxylase 66.0 85 0.0018 32.6 11.8 107 119-236 99-209 (592)
183 TIGR00683 nanA N-acetylneurami 64.9 1.2E+02 0.0025 28.3 11.7 108 116-230 21-134 (290)
184 TIGR03217 4OH_2_O_val_ald 4-hy 64.8 1.2E+02 0.0025 29.0 11.8 103 121-235 92-199 (333)
185 PF00701 DHDPS: Dihydrodipicol 64.6 53 0.0011 30.5 9.4 51 179-232 25-78 (289)
186 cd00951 KDGDH 5-dehydro-4-deox 64.4 53 0.0012 30.5 9.3 51 179-232 24-77 (289)
187 cd07937 DRE_TIM_PC_TC_5S Pyruv 64.2 1.2E+02 0.0026 28.0 11.8 104 120-235 95-203 (275)
188 PRK04147 N-acetylneuraminate l 63.7 1.1E+02 0.0023 28.5 11.3 112 114-230 22-136 (293)
189 PLN02417 dihydrodipicolinate s 63.4 50 0.0011 30.6 8.9 52 179-233 25-79 (280)
190 PRK11858 aksA trans-homoaconit 63.2 72 0.0016 31.0 10.2 52 179-236 148-200 (378)
191 TIGR00674 dapA dihydrodipicoli 63.1 58 0.0013 30.1 9.3 52 179-233 22-76 (285)
192 cd00953 KDG_aldolase KDG (2-ke 62.3 73 0.0016 29.4 9.7 51 179-232 23-73 (279)
193 TIGR03581 EF_0839 conserved hy 62.2 55 0.0012 28.9 8.0 74 180-297 139-212 (236)
194 TIGR00683 nanA N-acetylneurami 61.8 58 0.0013 30.3 9.0 51 179-232 24-78 (290)
195 TIGR01235 pyruv_carbox pyruvat 61.7 90 0.002 35.2 11.7 106 120-236 629-744 (1143)
196 PRK03170 dihydrodipicolinate s 61.6 1.1E+02 0.0023 28.5 10.8 110 116-230 22-133 (292)
197 KOG1097 Adenine deaminase/aden 61.1 93 0.002 30.2 10.2 106 209-370 225-330 (399)
198 PF10566 Glyco_hydro_97: Glyco 61.1 23 0.0005 32.6 6.0 110 118-232 34-158 (273)
199 PRK15108 biotin synthase; Prov 60.8 1.1E+02 0.0025 29.2 11.0 110 114-230 77-190 (345)
200 PF02679 ComA: (2R)-phospho-3- 60.6 89 0.0019 28.3 9.5 96 190-322 38-136 (244)
201 PRK03170 dihydrodipicolinate s 60.3 60 0.0013 30.1 8.9 52 179-233 25-79 (292)
202 PF00701 DHDPS: Dihydrodipicol 59.6 99 0.0021 28.6 10.2 107 116-231 22-134 (289)
203 cd00952 CHBPH_aldolase Trans-o 59.4 1.2E+02 0.0027 28.4 10.9 110 116-230 29-141 (309)
204 TIGR00674 dapA dihydrodipicoli 59.0 1.4E+02 0.003 27.7 11.0 108 116-230 19-130 (285)
205 COG0422 ThiC Thiamine biosynth 58.9 1.8E+02 0.0038 28.2 12.8 165 122-327 84-271 (432)
206 PRK08444 hypothetical protein; 58.6 96 0.0021 29.8 10.0 55 177-236 84-138 (353)
207 PF02811 PHP: PHP domain; Int 58.1 12 0.00027 31.3 3.6 36 101-136 1-36 (175)
208 cd00423 Pterin_binding Pterin 57.9 1.5E+02 0.0032 27.0 12.2 124 177-320 25-174 (258)
209 cd00408 DHDPS-like Dihydrodipi 56.5 80 0.0017 29.0 9.0 52 179-233 21-75 (281)
210 TIGR02313 HpaI-NOT-DapA 2,4-di 55.4 85 0.0019 29.3 9.0 51 179-232 24-77 (294)
211 PF01964 ThiC: ThiC family; I 55.2 45 0.00099 32.3 7.0 53 268-328 203-270 (420)
212 TIGR02313 HpaI-NOT-DapA 2,4-di 55.0 1.8E+02 0.0039 27.1 11.4 108 116-230 21-133 (294)
213 COG1540 Uncharacterized protei 54.9 1.6E+02 0.0035 26.4 9.8 30 208-237 41-70 (252)
214 PRK03906 mannonate dehydratase 54.4 45 0.00099 32.5 7.1 133 210-375 213-348 (385)
215 cd00954 NAL N-Acetylneuraminic 53.9 1.8E+02 0.004 26.8 11.9 111 115-230 20-134 (288)
216 PRK13753 dihydropteroate synth 53.9 1.4E+02 0.0029 27.8 9.7 66 177-243 26-95 (279)
217 PRK06552 keto-hydroxyglutarate 53.7 81 0.0017 27.9 8.0 103 115-241 24-126 (213)
218 PRK08444 hypothetical protein; 53.3 60 0.0013 31.2 7.7 120 115-236 82-219 (353)
219 PF07071 DUF1341: Protein of u 53.1 62 0.0014 28.2 6.8 75 179-297 138-212 (218)
220 TIGR02660 nifV_homocitr homoci 53.0 1.3E+02 0.0029 29.0 10.1 51 180-236 146-197 (365)
221 cd00739 DHPS DHPS subgroup of 52.8 1.8E+02 0.004 26.5 13.0 123 177-319 25-173 (257)
222 PRK06015 keto-hydroxyglutarate 52.7 77 0.0017 27.8 7.6 96 116-238 16-111 (201)
223 PRK12999 pyruvate carboxylase; 52.5 2.1E+02 0.0046 32.3 12.7 104 122-236 633-746 (1146)
224 PRK07535 methyltetrahydrofolat 52.2 1.9E+02 0.0041 26.5 11.4 122 178-320 27-162 (261)
225 PRK11613 folP dihydropteroate 51.1 2.1E+02 0.0045 26.6 12.1 66 177-243 39-109 (282)
226 cd07939 DRE_TIM_NifV Streptomy 50.6 1.5E+02 0.0033 26.9 9.7 51 179-235 142-193 (259)
227 PF01081 Aldolase: KDPG and KH 49.8 1.3E+02 0.0029 26.2 8.6 96 115-237 19-114 (196)
228 PRK09856 fructoselysine 3-epim 49.5 2E+02 0.0044 26.0 13.0 120 178-320 15-150 (275)
229 COG0036 Rpe Pentose-5-phosphat 49.3 1.9E+02 0.0042 25.7 11.6 97 179-322 19-119 (220)
230 COG0269 SgbH 3-hexulose-6-phos 49.1 1.9E+02 0.0041 25.6 10.5 43 181-232 72-114 (217)
231 cd00954 NAL N-Acetylneuraminic 48.6 1.4E+02 0.0029 27.8 9.2 52 179-233 24-79 (288)
232 PRK07114 keto-hydroxyglutarate 47.8 1.3E+02 0.0029 26.8 8.5 100 116-239 27-127 (222)
233 cd07948 DRE_TIM_HCS Saccharomy 47.6 2.2E+02 0.0047 26.1 10.1 50 180-235 145-195 (262)
234 COG0329 DapA Dihydrodipicolina 47.4 1.4E+02 0.003 27.9 9.0 40 180-222 29-68 (299)
235 PRK04147 N-acetylneuraminate l 47.4 1.2E+02 0.0026 28.2 8.7 51 179-232 27-81 (293)
236 PRK08005 epimerase; Validated 46.9 2E+02 0.0044 25.3 12.2 97 179-322 16-116 (210)
237 PF01261 AP_endonuc_2: Xylose 46.8 1.3E+02 0.0027 25.8 8.3 120 183-325 2-138 (213)
238 TIGR01182 eda Entner-Doudoroff 46.7 1.1E+02 0.0023 27.0 7.6 96 116-238 20-115 (204)
239 COG0329 DapA Dihydrodipicolina 46.6 2.5E+02 0.0054 26.3 11.6 112 111-230 20-136 (299)
240 cd07940 DRE_TIM_IPMS 2-isoprop 45.8 1.9E+02 0.0042 26.4 9.7 51 179-235 146-200 (268)
241 TIGR01949 AroFGH_arch predicte 45.4 57 0.0012 29.7 6.0 107 114-232 34-144 (258)
242 PRK07226 fructose-bisphosphate 45.4 93 0.002 28.5 7.5 106 114-231 37-146 (267)
243 PRK09250 fructose-bisphosphate 45.2 31 0.00066 32.9 4.2 50 180-231 150-199 (348)
244 PRK15446 phosphonate metabolis 44.8 29 0.00063 33.8 4.2 35 207-241 210-245 (383)
245 PRK09234 fbiC FO synthase; Rev 44.8 1.6E+02 0.0035 32.0 10.0 53 178-235 562-614 (843)
246 PF00682 HMGL-like: HMGL-like 44.1 1.8E+02 0.004 25.8 9.1 51 179-235 140-192 (237)
247 cd00950 DHDPS Dihydrodipicolin 44.0 1.8E+02 0.0039 26.8 9.3 11 350-360 213-223 (284)
248 PTZ00300 pyruvate kinase; Prov 43.5 3.5E+02 0.0076 27.1 15.0 100 122-232 153-253 (454)
249 PF07287 DUF1446: Protein of u 43.2 1.2E+02 0.0026 29.2 8.0 67 211-314 58-124 (362)
250 TIGR03849 arch_ComA phosphosul 42.9 2.5E+02 0.0055 25.3 10.1 97 189-322 24-123 (237)
251 KOG4549 Magnesium-dependent ph 42.8 1E+02 0.0022 24.8 6.1 66 86-158 7-83 (144)
252 PRK07807 inosine 5-monophospha 42.8 1.9E+02 0.0041 29.1 9.6 109 117-236 227-344 (479)
253 COG1456 CdhE CO dehydrogenase/ 42.7 1.8E+02 0.0039 27.8 8.6 90 208-314 143-232 (467)
254 PLN03228 methylthioalkylmalate 41.3 1.7E+02 0.0037 29.6 9.0 52 179-236 242-298 (503)
255 TIGR03551 F420_cofH 7,8-dideme 40.7 2.8E+02 0.006 26.4 10.2 49 178-231 75-123 (343)
256 cd00959 DeoC 2-deoxyribose-5-p 40.6 62 0.0013 28.3 5.3 104 113-229 14-121 (203)
257 PF01791 DeoC: DeoC/LacD famil 40.6 49 0.0011 29.7 4.7 105 117-232 20-133 (236)
258 PRK10812 putative DNAse; Provi 40.3 2.9E+02 0.0064 25.2 13.1 96 261-369 105-206 (265)
259 cd00958 DhnA Class I fructose- 40.0 1.3E+02 0.0029 26.7 7.5 106 113-230 18-128 (235)
260 COG0800 Eda 2-keto-3-deoxy-6-p 39.9 97 0.0021 27.3 6.2 96 116-238 25-120 (211)
261 PRK09140 2-dehydro-3-deoxy-6-p 39.9 1.7E+02 0.0037 25.7 7.9 99 115-239 21-119 (206)
262 PF03932 CutC: CutC family; I 39.2 84 0.0018 27.6 5.7 103 120-231 11-121 (201)
263 PLN02321 2-isopropylmalate syn 39.2 1.9E+02 0.0042 30.2 9.2 52 179-236 243-299 (632)
264 PF04748 Polysacc_deac_2: Dive 39.0 2.7E+02 0.0059 24.5 10.7 111 189-315 89-205 (213)
265 PF01116 F_bP_aldolase: Fructo 38.6 2.3E+02 0.0049 26.4 8.8 67 300-374 115-185 (287)
266 PRK08227 autoinducer 2 aldolas 38.1 45 0.00097 30.6 4.0 48 180-229 98-145 (264)
267 PF02219 MTHFR: Methylenetetra 37.6 3.3E+02 0.0072 25.1 10.1 100 116-225 85-199 (287)
268 COG0191 Fba Fructose/tagatose 37.6 3.1E+02 0.0067 25.5 9.3 26 208-233 26-51 (286)
269 TIGR00695 uxuA mannonate dehyd 37.4 2E+02 0.0043 28.1 8.5 26 211-236 214-239 (394)
270 PF14871 GHL6: Hypothetical gl 36.7 1.2E+02 0.0026 24.5 6.0 26 206-231 39-64 (132)
271 COG1242 Predicted Fe-S oxidore 36.6 3.5E+02 0.0077 25.1 12.7 23 209-231 166-188 (312)
272 TIGR02090 LEU1_arch isopropylm 36.4 3.4E+02 0.0074 26.1 10.1 52 179-236 144-196 (363)
273 cd03174 DRE_TIM_metallolyase D 36.3 3.2E+02 0.007 24.5 11.3 50 180-235 150-201 (265)
274 PRK05406 LamB/YcsF family prot 36.1 3.3E+02 0.0073 24.7 11.8 29 208-236 41-69 (246)
275 TIGR00126 deoC deoxyribose-pho 35.8 83 0.0018 27.8 5.3 108 112-232 14-125 (211)
276 KOG2550 IMP dehydrogenase/GMP 35.7 3.1E+02 0.0068 26.9 9.2 51 178-230 302-360 (503)
277 PRK09875 putative hydrolase; P 35.7 3.7E+02 0.008 25.1 10.9 49 262-318 134-182 (292)
278 PRK05096 guanosine 5'-monophos 35.3 1.2E+02 0.0025 29.0 6.3 51 178-230 161-219 (346)
279 PRK07360 FO synthase subunit 2 35.2 2.5E+02 0.0055 27.1 9.0 121 114-236 92-231 (371)
280 cd07938 DRE_TIM_HMGL 3-hydroxy 35.2 1.2E+02 0.0027 27.9 6.6 51 179-235 152-204 (274)
281 PRK08610 fructose-bisphosphate 35.1 3.8E+02 0.0082 25.0 9.8 108 120-232 91-211 (286)
282 TIGR03699 mena_SCO4550 menaqui 34.8 2.6E+02 0.0056 26.5 9.0 51 178-233 77-127 (340)
283 PRK05826 pyruvate kinase; Prov 34.5 4.9E+02 0.011 26.1 14.3 99 121-230 178-278 (465)
284 PF07894 DUF1669: Protein of u 34.1 1.8E+02 0.004 26.9 7.3 50 176-232 133-182 (284)
285 cd08205 RuBisCO_IV_RLP Ribulos 34.0 2.3E+02 0.005 27.4 8.4 105 116-234 146-257 (367)
286 PRK00311 panB 3-methyl-2-oxobu 33.9 3.8E+02 0.0082 24.6 11.2 42 179-232 96-138 (264)
287 PRK05886 yajC preprotein trans 33.9 34 0.00075 26.7 2.2 15 44-58 37-51 (109)
288 cd07945 DRE_TIM_CMS Leptospira 33.7 1.5E+02 0.0032 27.5 6.8 51 179-235 150-202 (280)
289 TIGR03249 KdgD 5-dehydro-4-deo 33.5 4E+02 0.0086 24.8 11.6 50 180-232 30-82 (296)
290 smart00481 POLIIIAc DNA polyme 33.2 54 0.0012 22.6 3.0 33 102-134 1-33 (67)
291 COG1168 MalY Bifunctional PLP- 33.0 1.5E+02 0.0032 28.7 6.7 51 178-229 146-196 (388)
292 cd00537 MTHFR Methylenetetrahy 32.9 3.9E+02 0.0084 24.4 9.8 44 179-231 150-193 (274)
293 PRK12858 tagatose 1,6-diphosph 32.8 87 0.0019 30.0 5.2 48 182-230 112-162 (340)
294 TIGR01305 GMP_reduct_1 guanosi 32.8 1.4E+02 0.003 28.5 6.4 53 178-230 160-218 (343)
295 PRK07998 gatY putative fructos 32.7 4.1E+02 0.0089 24.7 9.9 109 120-232 88-207 (283)
296 PRK06256 biotin synthase; Vali 32.5 2.2E+02 0.0047 27.0 8.0 111 115-230 93-206 (336)
297 COG2089 SpsE Sialic acid synth 32.3 4.2E+02 0.009 25.2 9.2 27 207-233 156-184 (347)
298 KOG3020 TatD-related DNase [Re 32.3 4.3E+02 0.0093 24.8 10.8 135 89-234 7-158 (296)
299 PRK05927 hypothetical protein; 32.0 4.5E+02 0.0098 25.2 10.0 54 178-236 81-134 (350)
300 PRK07360 FO synthase subunit 2 31.8 4.5E+02 0.0098 25.4 10.1 50 178-232 96-146 (371)
301 PRK05692 hydroxymethylglutaryl 31.7 1.5E+02 0.0032 27.6 6.5 51 179-235 158-210 (287)
302 PLN02591 tryptophan synthase 31.5 4E+02 0.0087 24.2 10.1 42 180-231 97-138 (250)
303 PRK09195 gatY tagatose-bisphos 31.0 4.4E+02 0.0095 24.5 10.9 109 119-232 87-210 (284)
304 PRK13404 dihydropyrimidinase; 30.6 5.7E+02 0.012 25.7 11.8 29 208-236 218-247 (477)
305 PRK09240 thiH thiamine biosynt 30.4 3E+02 0.0064 26.7 8.6 106 114-226 105-217 (371)
306 TIGR00423 radical SAM domain p 30.4 4.6E+02 0.0099 24.5 10.3 40 270-312 148-187 (309)
307 PRK00507 deoxyribose-phosphate 30.2 2.5E+02 0.0054 25.0 7.4 24 114-137 20-43 (221)
308 PRK15408 autoinducer 2-binding 30.1 3.2E+02 0.007 25.9 8.8 46 177-232 68-113 (336)
309 PLN02591 tryptophan synthase 30.1 4.2E+02 0.0092 24.1 11.3 125 177-322 17-141 (250)
310 cd06557 KPHMT-like Ketopantoat 29.9 4.3E+02 0.0094 24.1 10.9 44 177-232 91-135 (254)
311 PRK11572 copper homeostasis pr 29.8 4.3E+02 0.0093 24.0 12.0 105 120-230 12-121 (248)
312 PRK05926 hypothetical protein; 29.8 2.6E+02 0.0057 27.1 8.0 107 114-229 100-225 (370)
313 PRK06806 fructose-bisphosphate 29.8 4.6E+02 0.0099 24.3 11.1 108 119-230 87-206 (281)
314 cd00947 TBP_aldolase_IIB Tagat 29.4 4.6E+02 0.01 24.2 11.2 107 120-232 83-204 (276)
315 COG0413 PanB Ketopantoate hydr 28.9 1.5E+02 0.0033 27.0 5.7 44 177-232 94-138 (268)
316 PRK12738 kbaY tagatose-bisphos 28.8 2.9E+02 0.0063 25.7 7.8 65 300-373 116-184 (286)
317 PF00218 IGPS: Indole-3-glycer 28.7 1.8E+02 0.0038 26.6 6.3 54 180-241 122-175 (254)
318 COG1830 FbaB DhnA-type fructos 28.6 1.1E+02 0.0025 27.9 4.9 52 179-232 100-151 (265)
319 COG1060 ThiH Thiamine biosynth 28.4 2.9E+02 0.0062 26.8 8.0 128 114-243 91-236 (370)
320 TIGR00973 leuA_bact 2-isopropy 28.3 4.1E+02 0.0089 26.9 9.4 52 179-236 149-205 (494)
321 PF13407 Peripla_BP_4: Peripla 28.1 1.7E+02 0.0037 25.9 6.3 44 176-229 42-85 (257)
322 PRK09389 (R)-citramalate synth 27.9 5.3E+02 0.011 26.1 10.1 51 180-236 147-198 (488)
323 PTZ00413 lipoate synthase; Pro 27.6 5.5E+02 0.012 25.1 9.5 57 170-227 304-365 (398)
324 TIGR02351 thiH thiazole biosyn 27.4 3.3E+02 0.0071 26.3 8.3 108 114-229 104-220 (366)
325 PRK05585 yajC preprotein trans 27.4 54 0.0012 25.5 2.3 18 42-59 49-66 (106)
326 PLN02389 biotin synthase 27.3 5.9E+02 0.013 24.8 11.4 110 115-230 118-232 (379)
327 COG1533 SplB DNA repair photol 27.1 5.2E+02 0.011 24.2 13.7 24 299-322 169-192 (297)
328 PF14488 DUF4434: Domain of un 27.1 2.2E+02 0.0047 24.1 6.2 56 177-232 21-86 (166)
329 PRK08508 biotin synthase; Prov 26.8 5E+02 0.011 23.9 9.5 112 114-230 41-156 (279)
330 TIGR00167 cbbA ketose-bisphosp 26.8 5.2E+02 0.011 24.0 10.1 51 179-232 160-214 (288)
331 TIGR00739 yajC preprotein tran 26.6 54 0.0012 24.3 2.1 39 21-59 13-51 (84)
332 KOG4245 Predicted metal-depend 26.4 4.4E+02 0.0095 23.0 8.9 169 177-373 80-252 (297)
333 PRK08091 ribulose-phosphate 3- 26.3 4.8E+02 0.01 23.4 11.1 96 178-322 27-128 (228)
334 TIGR03700 mena_SCO4494 putativ 26.3 5.8E+02 0.013 24.4 10.8 48 179-231 85-132 (351)
335 PRK08123 histidinol-phosphatas 26.1 76 0.0016 29.1 3.5 35 100-134 3-37 (270)
336 COG0159 TrpA Tryptophan syntha 26.1 5.2E+02 0.011 23.8 14.9 112 180-313 113-230 (265)
337 PRK13209 L-xylulose 5-phosphat 26.0 5E+02 0.011 23.6 15.0 52 178-229 23-75 (283)
338 TIGR02318 phosphono_phnM phosp 26.0 90 0.002 30.3 4.2 33 209-241 207-240 (376)
339 cd06568 GH20_SpHex_like A subg 25.9 86 0.0019 29.8 3.9 29 207-235 14-43 (329)
340 PRK06852 aldolase; Validated 25.6 96 0.0021 29.1 4.1 50 180-231 119-174 (304)
341 PF04481 DUF561: Protein of un 25.6 4.9E+02 0.011 23.3 10.5 122 175-315 25-148 (242)
342 PRK12738 kbaY tagatose-bisphos 25.3 5.6E+02 0.012 23.9 11.0 109 119-232 87-210 (286)
343 TIGR01858 tag_bisphos_ald clas 25.2 3.7E+02 0.0081 24.9 7.8 65 300-373 114-182 (282)
344 PF02548 Pantoate_transf: Keto 25.1 1.4E+02 0.0029 27.4 4.8 45 176-232 94-139 (261)
345 cd00019 AP2Ec AP endonuclease 25.1 4.3E+02 0.0093 24.0 8.4 17 211-227 85-101 (279)
346 PRK09206 pyruvate kinase; Prov 24.9 7.2E+02 0.016 25.0 14.1 99 122-231 178-278 (470)
347 PRK09856 fructoselysine 3-epim 24.9 4.9E+02 0.011 23.5 8.8 20 213-232 131-150 (275)
348 PRK09432 metF 5,10-methylenete 24.8 5.7E+02 0.012 23.8 9.3 104 116-231 97-209 (296)
349 PRK09195 gatY tagatose-bisphos 24.6 3.9E+02 0.0084 24.9 7.8 78 287-373 100-184 (284)
350 TIGR03700 mena_SCO4494 putativ 24.6 4.3E+02 0.0094 25.3 8.6 115 114-230 80-207 (351)
351 PTZ00170 D-ribulose-5-phosphat 24.2 5.1E+02 0.011 23.0 10.8 51 179-232 22-73 (228)
352 PLN02444 HMP-P synthase 24.1 8E+02 0.017 25.3 13.1 16 122-137 243-258 (642)
353 PRK00278 trpC indole-3-glycero 24.1 5.5E+02 0.012 23.4 12.0 103 118-238 72-174 (260)
354 cd07941 DRE_TIM_LeuA3 Desulfob 24.0 5.6E+02 0.012 23.4 12.1 51 179-235 154-206 (273)
355 TIGR00542 hxl6Piso_put hexulos 23.9 5.5E+02 0.012 23.3 13.0 52 178-229 18-70 (279)
356 PRK12344 putative alpha-isopro 23.8 2.2E+02 0.0048 29.0 6.6 52 179-236 161-213 (524)
357 PRK00915 2-isopropylmalate syn 23.8 5.8E+02 0.013 26.0 9.6 52 179-236 152-208 (513)
358 PLN02623 pyruvate kinase 23.7 8.4E+02 0.018 25.3 14.4 98 122-231 284-383 (581)
359 cd01733 LSm10 The eukaryotic S 23.7 1.9E+02 0.0041 21.0 4.5 33 41-73 41-75 (78)
360 PRK13957 indole-3-glycerol-pho 23.5 2.9E+02 0.0064 25.1 6.6 53 180-240 115-167 (247)
361 PRK03620 5-dehydro-4-deoxygluc 22.8 6.3E+02 0.014 23.5 11.9 13 349-361 219-231 (303)
362 PF04131 NanE: Putative N-acet 22.7 5.1E+02 0.011 22.5 9.7 97 120-238 3-106 (192)
363 cd02742 GH20_hexosaminidase Be 22.6 1.8E+02 0.0039 27.2 5.4 76 207-319 12-92 (303)
364 PF10055 DUF2292: Uncharacteri 22.5 96 0.0021 19.2 2.3 16 61-76 18-33 (38)
365 KOG4175 Tryptophan synthase al 22.5 5.4E+02 0.012 22.6 9.9 40 180-229 114-153 (268)
366 COG0320 LipA Lipoate synthase 22.4 4.9E+02 0.011 24.1 7.7 58 168-226 220-282 (306)
367 COG2813 RsmC 16S RNA G1207 met 22.3 3.4E+02 0.0073 25.5 6.9 85 287-377 182-277 (300)
368 COG0134 TrpC Indole-3-glycerol 22.1 86 0.0019 28.5 2.9 55 180-242 120-174 (254)
369 PRK15452 putative protease; Pr 21.8 8.1E+02 0.017 24.4 14.0 53 178-230 12-65 (443)
370 TIGR03326 rubisco_III ribulose 21.3 8E+02 0.017 24.2 10.0 108 116-233 160-273 (412)
371 PRK12569 hypothetical protein; 21.2 6.3E+02 0.014 22.9 10.9 29 208-236 44-72 (245)
372 PRK13209 L-xylulose 5-phosphat 21.1 6.3E+02 0.014 22.9 9.1 22 211-232 138-159 (283)
373 PF06415 iPGM_N: BPG-independe 21.1 2.7E+02 0.0058 24.9 5.8 14 300-313 135-148 (223)
374 PRK09613 thiH thiamine biosynt 20.9 8.6E+02 0.019 24.5 10.5 109 114-228 116-237 (469)
375 COG4939 Major membrane immunog 20.4 92 0.002 24.9 2.4 15 60-74 49-63 (147)
376 PRK05588 histidinol-phosphatas 20.3 1E+02 0.0023 27.9 3.2 33 100-133 1-33 (255)
377 PF03102 NeuB: NeuB family; I 20.2 4.8E+02 0.01 23.6 7.3 32 207-238 52-83 (241)
378 PRK14847 hypothetical protein; 20.1 7.7E+02 0.017 23.5 10.5 30 184-221 62-91 (333)
379 PRK12737 gatY tagatose-bisphos 20.1 5.3E+02 0.011 24.0 7.8 74 208-314 26-99 (284)
380 cd00405 PRAI Phosphoribosylant 20.1 5.7E+02 0.012 22.0 8.0 13 291-304 101-113 (203)
381 PF11068 YlqD: YlqD protein; 20.0 90 0.0019 25.3 2.4 14 60-73 117-130 (131)
No 1
>PLN02795 allantoinase
Probab=100.00 E-value=6.9e-65 Score=505.83 Aligned_cols=395 Identities=70% Similarity=1.134 Sum_probs=323.1
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHh-cccccccccccCCCCCccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCC
Q 015826 1 MENLNLQWRLLPTLTLLAASLFLLVF-KDSAKLSHSECSLLPYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDW 79 (399)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~ 79 (399)
||+-=.+-|.+||+..+-+.+..|.| +..-.+..+.++..|+.+++|+|++|+++++...++|+|+||+|++|++....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~vv~~~~~~~~~v~i~dG~I~~I~~~~~~ 80 (505)
T PLN02795 1 MESALLQLRILPLLALLATLVFFFLFAPALPLQGRDRCSLLPWPHFVLYSKRVVTPAGVIPGAVEVEGGRIVSVTKEEEA 80 (505)
T ss_pred CchHhhhhhhHHHHHHHHHHHHHHHhccccccccccccccccccceEEECCEEEECCCeEEEEEEEECCEEEEecCcccc
Confidence 55555666777777666644433333 22222356667788888999999999998877789999999999999875322
Q ss_pred CCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhc
Q 015826 80 PRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK 159 (399)
Q Consensus 80 ~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~ 159 (399)
+...++.++||++|++|+|||||+|+|++.++...++++...+++++.+||||++||+.++.|...+.+.++..++....
T Consensus 81 ~~~~~~~~~ida~G~~v~PG~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~ 160 (505)
T PLN02795 81 PKSQKKPHVLDYGNAVVMPGLIDVHVHLNEPGRTEWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKG 160 (505)
T ss_pred ccccCCCEEEECCCCEEecCEEecccCcCCCCccchhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhcc
Confidence 11112467999999999999999999999887778899999999999999999999995566777778888888887766
Q ss_pred cCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchh
Q 015826 160 RIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 239 (399)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~ 239 (399)
...++++++.+.........++++++.+.|+.+||.|+.+++...++..+++.+.++++.++++|+++++|+|+.+.+..
T Consensus 161 ~~~vd~~~~~~~~~~~~~~~~~l~~~~~~G~~g~k~f~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~ 240 (505)
T PLN02795 161 KLYVDVGFWGGLVPENAHNASVLEELLDAGALGLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVES 240 (505)
T ss_pred CceeeeeceecccCcchhHHHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecCChhHhhh
Confidence 77888887765544333456778888888999999998765433445678899999999999999999999999886542
Q ss_pred HHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEc
Q 015826 240 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~ 319 (399)
.... ..+..++..++.+||+.+|..++.+++.++++++..++.+|+++|++|+|++.+++++|+++|++|++|||||
T Consensus 241 ~~~~---~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~lhi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev 317 (505)
T PLN02795 241 DSRL---DADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVET 317 (505)
T ss_pred hhhh---hcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCEEEEECCChHHHHHHHHHHHHCCCcEEEEe
Confidence 2110 1223344556789999999999999999999876666666999999999995479999999999999999999
Q ss_pred cccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 320 CPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 320 ~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
|||||+|+++++..+++++||+||||+++||++||++|++|+||+|+|||+||+.++|..++.+|+++|+|++|+|++|
T Consensus 318 ~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~aL~~al~~G~Id~i~sDHap~~~~~K~~~~~~~~~a~~G~~gle~~l 396 (505)
T PLN02795 318 CPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQFVL 396 (505)
T ss_pred ChhhhcccHHHccCCCCceEEcCCCCChHHHHHHHHHHhCCCceEEecCCCCCChHHhccCcCCHhhCCCCceeHHHHH
Confidence 9999999999887778999999999999999999999999999999999999999999766678999999999999875
No 2
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=100.00 E-value=6e-64 Score=483.88 Aligned_cols=330 Identities=36% Similarity=0.529 Sum_probs=293.1
Q ss_pred ccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHHH
Q 015826 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122 (399)
Q Consensus 43 ~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~ 122 (399)
++++|+|+++++++....+||.|+||+|++|++..... .+.++||++|++|+||+||.|+|+++||+..+|++.+++
T Consensus 1 ~~~lIk~~~iv~~~~~~~~di~i~~g~I~~Ig~~l~~~---~~~~iiD~~g~~v~PG~ID~HVH~repg~~~ke~~~tgs 77 (430)
T COG0044 1 MDLLIKNARVVDPGEDEVADILIKDGKIAAIGKNLEPT---SGAEIIDAKGLLVLPGLVDLHVHFREPGFEHKETFETGS 77 (430)
T ss_pred CcEEEeccEEEcCCCceEecEEEECCEEEEeccCCCCC---CCCcEEECCCCEEccCeeEEEEecCCCCcchhhhHHHHH
Confidence 36899999999996667999999999999999864332 367899999999999999999999999999999999999
Q ss_pred HHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCCC
Q 015826 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI 202 (399)
Q Consensus 123 ~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~ 202 (399)
++|++||||||++|| ++.|...+.+.++.+++.++....+++.++++++..+....+.++... ..++|.|+....
T Consensus 78 ~AAa~GG~Ttv~dmP-nt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~~~~~~~~~~~---~~g~~~F~~~~~- 152 (430)
T COG0044 78 RAAAAGGVTTVVDMP-NTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNLGKLELTERGV---EAGFKGFMDDST- 152 (430)
T ss_pred HHHHcCCceEEEECC-CCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEeccccchhhhhhhhh---ccceEEEecCCc-
Confidence 999999999999999 888989999999999999988899999999998876543232333222 456677776542
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccC
Q 015826 203 NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTD 282 (399)
Q Consensus 203 ~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~ 282 (399)
+..+.+.+++.++++++.|.++.+|+|+++...+.+++.+ ......++..+|+.+|..++.+.+++++.+
T Consensus 153 ---~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g----~~~~~~~~~~~p~~aE~~~iar~~~la~~~--- 222 (430)
T COG0044 153 ---GALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNEG----LRAPELGLAGRPPIAEASAIARDLELARAT--- 222 (430)
T ss_pred ---CcCCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhcC----ccchhhccCCCChHHHHHHHHHHHHHHHHh---
Confidence 3578899999999999999999999999987766666554 455667888999999999999999999976
Q ss_pred CCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCc
Q 015826 283 GPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI 362 (399)
Q Consensus 283 ~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i 362 (399)
|+++|++|+|++ +++++++.+|..|++||||+|||||+|+++++..+++++|||||||+++||++||+++++|+|
T Consensus 223 ----g~~vhi~HiSt~-~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~~~~~~k~nPPLR~~~dr~aL~~~l~~G~I 297 (430)
T COG0044 223 ----GARVHICHISTK-ESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGTLAKVNPPLRDEEDREALWEALKDGVI 297 (430)
T ss_pred ----CCcEEEEEcCCH-HHHHHHHHHhhcCCceEEeecchheEccHhHhhccCcceEECCCCCCHHHHHHHHHHHhCCCC
Confidence 899999999999 999999999999999999999999999999988889999999999999999999999999999
Q ss_pred cEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 363 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 363 d~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
|+|+|||+||+.++|.. +|+.+|+|++|+|+.|
T Consensus 298 D~iasDHaPht~eeK~~---~f~~ap~G~~glE~~l 330 (430)
T COG0044 298 DVIASDHAPHTLEEKRL---PFEEAPSGIPGLETAL 330 (430)
T ss_pred cEEEcCCCCCCHHHhcc---chhhCCCCCccHHHHH
Confidence 99999999999999964 4999999999999975
No 3
>PRK07369 dihydroorotase; Provisional
Probab=100.00 E-value=5.9e-63 Score=481.48 Aligned_cols=331 Identities=27% Similarity=0.371 Sum_probs=288.5
Q ss_pred CccEEEEccEEEcCCC--ceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchH
Q 015826 42 YNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~--~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~ 119 (399)
|.+++|+|++|+++.+ ...++|+|+||+|++|++..... ..+.++||++|++|+|||||+|+|++.++...++++.
T Consensus 1 ~~~~~i~n~~v~d~~~~~~~~~~v~I~dg~I~~i~~~~~~~--~~~~~~iDa~G~~vlPG~ID~H~H~~~~~~~~~e~~~ 78 (418)
T PRK07369 1 MSNELLQQVRVLDPVSNTDRIADVLIEDGKIQAIEPHIDPI--PPDTQIIDASGLILGPGLVDLYSHSGEPGFEERETLA 78 (418)
T ss_pred CCCEEEeCeEEECCCCCcccceeEEEECCEEEEecCCcccC--CCCCEEEECCCCEEecCEEecccccCCCCcCCCccHH
Confidence 4588999999998654 35789999999999998653211 1256899999999999999999999999888889999
Q ss_pred HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCC-hhhHHHHHHHHHcCCcEEEEeec
Q 015826 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLNAGVLGLKSFMC 198 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~G~~~ik~~~~ 198 (399)
+++++|+++||||+++|| ++.|...+.+.+..+++.+...+.+||.+++.+.... ....+++.++.+.|+.+||.+
T Consensus 79 s~~~aa~~GGvTtv~~~p-n~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~ei~~l~~~Gv~~f~~~-- 155 (418)
T PRK07369 79 SLAAAAAAGGFTRVAILP-DTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQGKQLTELAELAAAGVVGFTDG-- 155 (418)
T ss_pred HHHHHHHhCCceEEEECC-CCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCCCccHhhHHHHHHCCCEEEECC--
Confidence 999999999999999999 7788888899999888888777889999998876543 245778888888899888731
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhh
Q 015826 199 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278 (399)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~ 278 (399)
.+..+.+.+.++++.++++|.++.+|+|+.+.+.++.++. +..+...|+.+||+.+|..++.+++.+++.
T Consensus 156 ------~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~----g~~~~~~~~~~~p~~aE~~av~r~~~la~~ 225 (418)
T PRK07369 156 ------QPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNGVMRE----GLLALRLGLPGDPASAETTALAALLELVAA 225 (418)
T ss_pred ------CcCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhcCcccC----ChhHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2235677899999999999999999999999865554433 344566778899999999999999999998
Q ss_pred hccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHh
Q 015826 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM 358 (399)
Q Consensus 279 ~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~ 358 (399)
+ |+++||+|+|++ +++++|+++|++|++||||||||||+|+++++..+++.+||+||||+++||++||++|+
T Consensus 226 ~-------~~~~hi~HvSs~-~~~~~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~ 297 (418)
T PRK07369 226 I-------GTPVHLMRISTA-RSVELIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVR 297 (418)
T ss_pred H-------CCcEEEEeCCCH-HHHHHHHHHHHcCCCeEEEecHHHHhccHHHHhccCCCcEECCCCCCHHHHHHHHHHHh
Confidence 6 999999999999 99999999999999999999999999999988777889999999999999999999999
Q ss_pred cCCccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 359 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 359 ~G~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
+|+||+|+|||+||+.++|.. +|+++|+|++|+|+.|
T Consensus 298 ~G~Id~i~SDHaP~~~~~K~~---~~~~~~~G~~G~e~~l 334 (418)
T PRK07369 298 TGVIDAIAIDHAPYTYEEKTV---AFAEAPPGAIGLELAL 334 (418)
T ss_pred cCCCCEEEcCCCCCCHHHccC---CHhHCCCCceeHHHHH
Confidence 999999999999999999863 7999999999999865
No 4
>PRK07627 dihydroorotase; Provisional
Probab=100.00 E-value=4.9e-61 Score=469.38 Aligned_cols=330 Identities=23% Similarity=0.317 Sum_probs=277.8
Q ss_pred ccEEEEccEEEcCCCc--eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHH
Q 015826 43 NQYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 120 (399)
Q Consensus 43 ~~~li~n~~vv~~~~~--~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~ 120 (399)
|+++|+|++|+++.+. .+++|+|+||||++|++..... .+.++||++|++|+|||||+|+|+++++...++++.+
T Consensus 1 m~~~i~~~~v~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~---~~~~~iDa~g~~vlPG~iD~H~H~~~~g~~~~e~~~t 77 (425)
T PRK07627 1 MKIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAGF---NADKTIDASGLIVCPGLVDLSARLREPGYEYKATLES 77 (425)
T ss_pred CeEEEEeeEEECCCCCccceeEEEEECCEEEEecCCCcCC---CCCeEEECCCCEEeccEEeccccccCCCccccCcHHH
Confidence 3689999999987653 5789999999999998743211 3568999999999999999999999988888899999
Q ss_pred HHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCC-ChhhHHHHHHHHHcCCcEEEEeecC
Q 015826 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMCP 199 (399)
Q Consensus 121 ~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~G~~~ik~~~~~ 199 (399)
.+++++.+||||+++|| ++.|.....+.++...........+++..++.+..+ ..+..++++++.+.|+.+||.+
T Consensus 78 ~s~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~l~~~G~~~fk~~--- 153 (425)
T PRK07627 78 EMAAAVAGGVTSLVCPP-DTDPVLDEPGLVEMLKFRARNLNQAHVYPLGALTVGLKGEVLTEMVELTEAGCVGFSQA--- 153 (425)
T ss_pred HHHHHHhCCeeEEEeCC-CCCCCCCCHHHHHHHHHHhhccCceeEEEeCeEEcCCCccCHHHHHHHHhCCEEEEEcC---
Confidence 99999999999999999 677766666666655555444445565555544332 3445788889988999999863
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhh
Q 015826 200 SGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDT 279 (399)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~ 279 (399)
..+..++..+.++++.++++|.++.+|+|+......+... .+..+...++.+||+.+|..++.+++.+|+++
T Consensus 154 ----~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~~----~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~ 225 (425)
T PRK07627 154 ----NVPVVDTQVLLRALQYASTFGFTVWLRPLDAFLGRGGVAA----SGAVASRLGLSGVPVAAETIALHTIFELMRVT 225 (425)
T ss_pred ----CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhhCCCcC----CCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1234678899999999999999999999998765433332 23345567788999999999999999999986
Q ss_pred ccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhc
Q 015826 280 RTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 359 (399)
Q Consensus 280 ~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~ 359 (399)
|+|+||+|+|++ +++++|+++|++|++||||||||||+|+++++..+++.+||+||||++++|++||+++++
T Consensus 226 -------~~~~hi~HvSs~-~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~ 297 (425)
T PRK07627 226 -------GARVHLARLSSA-AGVALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPPLRSQRDREAIRAALAD 297 (425)
T ss_pred -------CCcEEEEeCCCH-HHHHHHHHHHHCCCCeEEEeccchheEeHhHHhccCCceEEeCCCCCHHHHHHHHHHHhc
Confidence 899999999999 999999999999999999999999999999887778899999999999999999999999
Q ss_pred CCccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 360 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 360 G~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
|+||+|+|||+||+.++|. .+|+.+++|++|+|+++
T Consensus 298 G~id~i~SDHaP~~~~~k~---~~~~~~~~G~~g~e~~~ 333 (425)
T PRK07627 298 GTIDAICSDHTPVDDDEKL---LPFAEATPGATGLELLL 333 (425)
T ss_pred CCCcEEEcCCCCCCHHHcc---CCHhhCCCCceeHHHHH
Confidence 9999999999999988885 37999999999999854
No 5
>PRK09059 dihydroorotase; Validated
Probab=100.00 E-value=4.2e-60 Score=463.33 Aligned_cols=334 Identities=23% Similarity=0.310 Sum_probs=284.0
Q ss_pred CccEEEEccEEEcCCCc--eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchH
Q 015826 42 YNQYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~--~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~ 119 (399)
+.+++|+|++|+++++. .+++|+|+||||++|++.......+.+.++||++|++|+|||||+|+|++.++..+.+++.
T Consensus 2 ~~~~~i~n~~v~~~~~~~~~~~~v~I~~G~I~~i~~~~~~~~~~~~~~viDa~G~~v~PG~ID~HvH~~~~~~~~~e~~~ 81 (429)
T PRK09059 2 MRPILLANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDARVFVGEPGAEHRETIA 81 (429)
T ss_pred CcCEEEEeeEEECCCCCcccceEEEEECCEEEEecCccccccCCCCCeEEECCCCEEeccEEecccccCCCCchhhhhHH
Confidence 46789999999998774 3789999999999998643211001245799999999999999999999887777788899
Q ss_pred HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCC-ChhhHHHHHHHHHcCCcEEEEeec
Q 015826 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMC 198 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~G~~~ik~~~~ 198 (399)
..+++++++||||+++|| ++.|...+.+.++.+++.+.....+++.+++.+..+ ..+..+++.++.+.|+.+|+..
T Consensus 82 ~~s~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~~~Gv~~f~~~-- 158 (429)
T PRK09059 82 SASRAAAAGGVTSIIMMP-DTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAGEEMTEFGLLRAAGAVAFTDG-- 158 (429)
T ss_pred HHHHHHHhCCcEEEEecc-CCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCCcchHHHHHHHhcCcEEEecC--
Confidence 999999999999999999 677777788888888887776677899988877654 3455778888888898877632
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhh
Q 015826 199 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278 (399)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~ 278 (399)
..+..+...+.+++++++++|+++.+|+|+.+.+....+.. +..+...++.+||..+|..++.+++.++++
T Consensus 159 -----~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~----~~~~~~~~~~~rP~~aE~~av~r~~~la~~ 229 (429)
T PRK09059 159 -----RRSVANTQVMRRALTYARDFDAVIVHETRDPDLGGNGVMNE----GLFASWLGLSGIPREAEVIPLERDLRLAAL 229 (429)
T ss_pred -----CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcCC----cHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 12345677799999999999999999999998765433332 233445677899999999999999999997
Q ss_pred hccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHh
Q 015826 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM 358 (399)
Q Consensus 279 ~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~ 358 (399)
+ |+++||+|+|++ +++++|+++|++|++||||||||||+|+++++..+++++||+||||+++||++||++|+
T Consensus 230 ~-------~~~~hi~hvs~~-~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~~~kvnPPLR~~~d~~~L~~~l~ 301 (429)
T PRK09059 230 T-------RGRYHAAQISCA-ESAEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRTEDDRVAMVEAVA 301 (429)
T ss_pred H-------CCcEEEEecCCH-HHHHHHHHHHHCCCCEEEeecHHHHhccHHHHhccCCccEEcCCCCCHHHHHHHHHHHH
Confidence 6 999999999999 99999999999999999999999999999988777889999999999999999999999
Q ss_pred cCCccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 359 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 359 ~G~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
+|.||+|+|||+||+.++|.. +|+++|+|++|+|+++
T Consensus 302 ~g~id~i~sDh~p~~~~~K~~---~~~~~~~G~~gle~~l 338 (429)
T PRK09059 302 SGTIDIIVSSHDPQDVDTKRL---PFSEAAAGAIGLETLL 338 (429)
T ss_pred cCCCcEEEeCCCCCCHHHCcC---ChhhCCCCcccHHHHH
Confidence 999999999999999998863 7999999999999874
No 6
>PRK08417 dihydroorotase; Provisional
Probab=100.00 E-value=2.8e-59 Score=453.01 Aligned_cols=300 Identities=23% Similarity=0.273 Sum_probs=258.3
Q ss_pred EEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCC
Q 015826 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDP 142 (399)
Q Consensus 63 V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~ 142 (399)
|+|+||||++|++.. .+.++||++|++|+|||||+|+|++.++.. ++++.+++++|+++||||+++|| ++.|
T Consensus 1 i~I~dG~I~~i~~~~------~~~~viDa~g~~vlPG~ID~HvH~~~~~~~-~e~~~t~s~aA~aGGvTtv~dmp-nt~P 72 (386)
T PRK08417 1 IRIKDGKITEIGSDL------KGEEILDAKGKTLLPALVDLNVSLKNDSLS-SKNLKSLENECLKGGVGSIVLYP-DSTP 72 (386)
T ss_pred CEEECCEEEEecCCC------CCCeEEECCCCEEccCeeEEeeeeCCCCcC-hhhHHHHHHHHHcCCcEEEEeCC-CCCC
Confidence 679999999998643 256899999999999999999999987765 58999999999999999999999 7778
Q ss_pred CCCcHHHHHHHHHHHhc--cCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHH
Q 015826 143 STISTETLKLKVDAAEK--RIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVL 220 (399)
Q Consensus 143 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a 220 (399)
...+.+.++...+.... ..++++. ... ...+..+++.++.+.|+.+||.+. ..+++.+.++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~i~~l~~~Gv~~~k~~~---------~~~~~~l~~~~~~a 139 (386)
T PRK08417 73 AIDNEIALELINSAQRELPMQIFPSI---RAL-DEDGKLSNIATLLKKGAKALELSS---------DLDANLLKVIAQYA 139 (386)
T ss_pred CCCCHHHHHHHHHHhhccCCcEEEEE---EEE-CCCccHHHHHHHHHCCCEEEECCC---------CCCHHHHHHHHHHH
Confidence 88888888777665544 3344442 233 233457888888889999887531 35788999999999
Q ss_pred HhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhH
Q 015826 221 ARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 300 (399)
Q Consensus 221 ~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~ 300 (399)
+++|+++.+|+|+.+.+....++. +..++..++.+||..+|..++.+++.+++++ |+++||+|+|++ +
T Consensus 140 ~~~g~~V~~HaEd~~~~~~~~~~~----g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~-------~~~lhi~hvS~~-~ 207 (386)
T PRK08417 140 KMLDVPIFCRCEDSSFDDSGVMND----GELSFELGLPGIPSIAETKEVAKMKELAKFY-------KNKVLFDTLALP-R 207 (386)
T ss_pred HHcCCEEEEeCCCHHHhhHHHHhc----ChhhHHhCCCCCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-H
Confidence 999999999999988876555543 3445667788999999999999999999986 899999999999 9
Q ss_pred HHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCCCcccccCC
Q 015826 301 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLD 380 (399)
Q Consensus 301 ~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~~~~~k~~~ 380 (399)
++++|+++|++|++||||||||||+|+++++..+++.+||+||||+++||++||++|++|+||+|+|||+||+.++|..
T Consensus 208 ~~~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~~- 286 (386)
T PRK08417 208 SLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKDL- 286 (386)
T ss_pred HHHHHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC-
Confidence 9999999999999999999999999999888777889999999999999999999999999999999999999988863
Q ss_pred cCCcccccCCcchhcccc
Q 015826 381 EGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 381 ~~~~~~~~~G~~g~e~~l 398 (399)
+|+++|+|++|+|+++
T Consensus 287 --~~~~a~~G~~g~e~~~ 302 (386)
T PRK08417 287 --AFDEAAFGIDSICEYF 302 (386)
T ss_pred --CHhHCCCCchHHHHHH
Confidence 6999999999999875
No 7
>PRK13404 dihydropyrimidinase; Provisional
Probab=100.00 E-value=2.8e-58 Score=456.71 Aligned_cols=335 Identities=25% Similarity=0.355 Sum_probs=281.7
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCC---CCCCcCch
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRTEWEGF 118 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~~~~e~~ 118 (399)
+++++|+|++|+++++..+++|+|+||+|++|++.. + .+.++||++|++|+|||||+|+|+.++ +....+++
T Consensus 3 ~~d~~i~~~~v~~~~~~~~~~i~I~dg~I~~i~~~~--~---~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~e~~ 77 (477)
T PRK13404 3 AFDLVIRGGTVVTATDTFQADIGIRGGRIAALGEGL--G---PGAREIDATGRLVLPGGVDSHCHIDQPSGDGIMMADDF 77 (477)
T ss_pred CCcEEEECCEEEcCCCceEEEEEEECCEEEEecCCC--C---CCCeEEECCCCEEecCEEEeEEcCCccccCCccccchH
Confidence 357899999999987766899999999999998642 1 255799999999999999999999875 34567889
Q ss_pred HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhH-HHHHHHHHcCCcEEEEee
Q 015826 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA-SALEALLNAGVLGLKSFM 197 (399)
Q Consensus 119 ~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~G~~~ik~~~ 197 (399)
.+.+++++.+||||+++++ ++.+.....+.++.........+.++++++........+.. ++++++.+.|+.+||+|+
T Consensus 78 ~~~s~aa~~gGvTtv~~~~-~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~v~~l~~~G~~~iKi~~ 156 (477)
T PRK13404 78 YTGTVSAAFGGTTTVIPFA-AQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIVADPTEEVLTEELPALIAQGYTSFKVFM 156 (477)
T ss_pred HHHHHHHHcCCccEEEEcc-CCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEecCCChhhHHHHHHHHHHcCCCEEEEEe
Confidence 9999999999999999998 45555666777777776766777889988876654433333 678899999999999997
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchh---HHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHH
Q 015826 198 CPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER---HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 274 (399)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~ 274 (399)
.+.+ +..+++++.+++++|+++|++|.+|+++.+.+.. ..++. +......++..||..+|..++.+++.
T Consensus 157 ~~~~----~~~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~~----G~~~~~~~~~~rp~~~E~~~v~~~~~ 228 (477)
T PRK13404 157 TYDD----LKLDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLAA----GLTAPKYHAISRPMLAEREATHRAIA 228 (477)
T ss_pred cCCC----CCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHC----CCcchhhccccCCHHHHHHHHHHHHH
Confidence 5431 3568899999999999999999999999887542 22322 23344567789999999999999999
Q ss_pred HHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCC---CCcceEEcCCCCChhhHH
Q 015826 275 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD---GDTRFKCAPPIRDAANKE 351 (399)
Q Consensus 275 ~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~---~~~~~~~~Pplr~~~~~~ 351 (399)
+++++ |+|+|++|+|++ +++++|+.+|++|+.+|||||||||+++++++.. .|+.+||+||||++++|+
T Consensus 229 la~~~-------g~~~hi~Hvs~~-~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~Pplr~~~d~~ 300 (477)
T PRK13404 229 LAELV-------DVPILIVHVSGR-EAAEQIRRARGRGLKIFAETCPQYLFLTAEDLDRPGMEGAKYICSPPPRDKANQE 300 (477)
T ss_pred HHHHh-------CCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEEChhhhccCHHHhcCccccCCceEECCCCCChHHHH
Confidence 99986 999999999999 9999999999999999999999999999998765 688999999999999999
Q ss_pred HHHHHHhcCCccEEeCCCCCCCccccc----CC-cCCcccccCCcchhcccc
Q 015826 352 KLWEALMDGHIDMLSSDHSPTVPELKL----LD-EGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 352 ~l~~~l~~G~id~i~sdh~p~~~~~k~----~~-~~~~~~~~~G~~g~e~~l 398 (399)
+||++|++|+||+|+|||+||+.++|. .+ +.+|+++|+|++|+|+.+
T Consensus 301 aL~~~l~~G~id~i~sDHap~~~~eK~~~~~~~~~~~~~~~~~G~~gie~~l 352 (477)
T PRK13404 301 AIWNGLADGTFEVFSSDHAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRL 352 (477)
T ss_pred HHHHHHhCCCceEEecCCCCCCcccchhhhhccCCCCHhhCCCCcccHHHHH
Confidence 999999999999999999999987761 11 237999999999999864
No 8
>PRK06189 allantoinase; Provisional
Probab=100.00 E-value=2.7e-57 Score=448.35 Aligned_cols=336 Identities=41% Similarity=0.718 Sum_probs=288.8
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHH
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~ 121 (399)
+++++|+|++|+++++..+++|+|+||+|++|++.... ++.++||++|++|+|||||+|+|+..++...++++.+.
T Consensus 2 ~~~~~i~~~~v~~~~~~~~~~v~i~~G~I~~i~~~~~~----~~~~~iD~~g~~vlPG~ID~H~H~~~~~~~~~~~~~~~ 77 (451)
T PRK06189 2 MYDLIIRGGKVVTPEGVYRADIGIKNGKIAEIAPEISS----PAREIIDADGLYVFPGMIDVHVHFNEPGRTHWEGFATG 77 (451)
T ss_pred CccEEEECCEEEcCCCcEEEEEEEECCEEEEecCCCCC----CCCeEEECCCCEEecCEEEeeeccCCCCCCCcccHHHH
Confidence 46899999999998887789999999999999875321 24679999999999999999999998877778899999
Q ss_pred HHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCC
Q 015826 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 201 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~ 201 (399)
++.++++||||+++|+.++.|...+.+.+....+.+...+.+|+.++.+.... ..+++.++.+.|+.+||.|+...+
T Consensus 78 ~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~l~~l~~~Gv~~~k~f~~~~~ 154 (451)
T PRK06189 78 SAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALWGGLVPG---NLEHLRELAEAGVIGFKAFMSNSG 154 (451)
T ss_pred HHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCceEeEEEEeccccc---CHHHHHHHHHcCCcEEEEEccccC
Confidence 99999999999999986666777778888888888877788999987654433 356788888899999999986543
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhH---HhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhh
Q 015826 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH---VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278 (399)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~ 278 (399)
..+.+..++..+.++++.++++|.++.+|+|+++.+... ++.. +..+...|+.++|+.+|..++.+++.++++
T Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~e~~~~~~~~~~~~~~~----g~~~~~~~~~~~P~~~E~~~v~~~l~la~~ 230 (451)
T PRK06189 155 TDEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRHLTTQARQQ----GKTDVRDYLESRPVVAELEAVQRALLYAQE 230 (451)
T ss_pred CCCcCcCCHHHHHHHHHHHHhcCCeEEEECCChHHHHHHHHHHHhc----CCCChhHccccCCHHHHHHHHHHHHHHHHH
Confidence 233445678899999999999999999999998865422 2322 233455678899999999999999999998
Q ss_pred hccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHh
Q 015826 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM 358 (399)
Q Consensus 279 ~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~ 358 (399)
+ |+++|++|+|+. +++++|+++|++|.++|||||||||+++++++...++.+||+||||++++|++||++++
T Consensus 231 ~-------g~~~hi~HiSt~-~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~ 302 (451)
T PRK06189 231 T-------GCPLHFVHISSG-KAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLL 302 (451)
T ss_pred h-------CCCEEEEECCCH-HHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhCcCCceEEeCCCCChhhHHHHHHHHh
Confidence 6 899999999999 99999999999999999999999999999988767889999999999999999999999
Q ss_pred cCCccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 359 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 359 ~G~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
+|+||+|+|||+||+.++|.. .+|+++|+|++|+|+++
T Consensus 303 ~G~i~~i~sDh~p~~~~~K~~--~~~~~~~~G~~g~e~~l 340 (451)
T PRK06189 303 AGEIDMISSDHSPCPPELKEG--DDFFLVWGGISGGQSTL 340 (451)
T ss_pred CCCceEEECCCCCCCHHHcCc--CCcccCCCCceeHHHHH
Confidence 999999999999999888852 47999999999999865
No 9
>PRK08044 allantoinase; Provisional
Probab=100.00 E-value=2.8e-56 Score=439.53 Aligned_cols=337 Identities=36% Similarity=0.643 Sum_probs=288.0
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHH
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~ 121 (399)
+++++|+|++|+++++...++|+|+||+|++|++... .+.++||++|++|+|||||+|+|+..++...++++.+.
T Consensus 2 ~~~~~i~n~~vi~~~~~~~~~i~I~dg~I~~i~~~~~-----~~~~~iD~~G~~v~Pg~iD~h~h~~~~~~~~~e~~~~~ 76 (449)
T PRK08044 2 SFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLG-----DAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETG 76 (449)
T ss_pred CceEEEECcEEEcCCCCEEEEEEEECCEEEEecCCCC-----CCCeEEECCCCEEcCCeeccccccCCCCccccccHHHH
Confidence 3588999999998777677999999999999986432 24579999999999999999999998887778899999
Q ss_pred HHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCC
Q 015826 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 201 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~ 201 (399)
++.++++||||++||+.++.|...+.+.++.+.+.++..+.+|+.+++++... ...++.++.+.|+.+||+|+.+.+
T Consensus 77 ~~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~~---~~~ei~~l~~~gv~~fk~~~~~~~ 153 (449)
T PRK08044 77 TRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY---NLDRLHELDEVGVVGFKCFVATCG 153 (449)
T ss_pred HHHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeeeEEEEeeeCCC---CHHHHHHHHHcCceEEEEEecccC
Confidence 99999999999999996677888889999988888877888999888776543 467788888899999999976532
Q ss_pred C----CCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHh
Q 015826 202 I----NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 277 (399)
Q Consensus 202 ~----~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~ 277 (399)
. .+....++..+.++++.++++|.++.+|+|+.+.+........ ..+......++.+||..+|..++.+++.+++
T Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~-~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~ 232 (449)
T PRK08044 154 DRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEEAK-REGRVTAHDYVASRPVFTEVEAIRRVLYLAK 232 (449)
T ss_pred cccccCCccCcCHHHHHHHHHHHHhcCCEEEEecCCHHHHHHHHHHHH-hcCCCChhhccccCCHHHHHHHHHHHHHHHH
Confidence 1 1123357778999999999999999999999987553221100 1223355567789999999999999999999
Q ss_pred hhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHH
Q 015826 278 DTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEAL 357 (399)
Q Consensus 278 ~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l 357 (399)
++ |+++|++|+|+. +++++++++|++|.++|||+|||||+++++++...|+.+|++||||++++|++||++|
T Consensus 233 ~~-------g~~vhi~HiSt~-~~~~~i~~ak~~G~~it~e~~~h~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l 304 (449)
T PRK08044 233 VA-------GCRLHVCHISSP-EGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKL 304 (449)
T ss_pred Hh-------CCCEEEEeCCCH-HHHHHHHHHHHCCCCEEEEcChhhhcccHHHhhCCCCcEEEcCCCCChHHHHHHHHHH
Confidence 86 899999999999 8999999999999999999999999999998877788999999999999999999999
Q ss_pred hcCCccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 358 MDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 358 ~~G~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
++|+||+|+|||+||+.++|. .+|+++|+|++|+|+.|
T Consensus 305 ~~G~id~i~sDH~P~~~~~K~---~~~~~~~~g~~g~e~~l 342 (449)
T PRK08044 305 FNGEIDCLVSDHSPCPPEMKA---GNIMEAWGGIAGLQNCM 342 (449)
T ss_pred hCCCceEEEcCCCCCChHHcc---CChhhCCCCceEHHHHH
Confidence 999999999999999988886 47999999999999865
No 10
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=100.00 E-value=6.4e-56 Score=438.17 Aligned_cols=334 Identities=49% Similarity=0.829 Sum_probs=287.6
Q ss_pred cEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHHHH
Q 015826 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTK 123 (399)
Q Consensus 44 ~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~ 123 (399)
|++|+|++|+++++..+++|.|+||+|++|++... + .+.++||++|++|+|||||+|+|+..++...++++.+.++
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~i~dg~I~~i~~~~~-~---~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~ 76 (443)
T TIGR03178 1 DLIIRGGRVILPNGEREADVGVKGGKIAAIGPDIL-G---PAAKIIDAGGLVVFPGVVDTHVHINEPGRTEWEGFETGTR 76 (443)
T ss_pred CEEEECcEEECCCCceEEEEEEECCEEEEeeCCCC-C---CCCeEEECCCCEEeccEeccccccCCCCccccchHHHHHH
Confidence 57899999999888778999999999999987532 1 2568999999999999999999999887777889999999
Q ss_pred HHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCCCC
Q 015826 124 AAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN 203 (399)
Q Consensus 124 ~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~ 203 (399)
+++++||||++||++++.|...+.+.+...++.......++++++++... +..+++.++.+.|+.+||+|+.+.+..
T Consensus 77 ~~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~i~~~~~~G~~~ik~~~~~~~~~ 153 (443)
T TIGR03178 77 AAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFWGGLVP---YNLDDLRELDEAGVVGFKAFLSPSGDD 153 (443)
T ss_pred HHHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCceeEEEEeccCC---CCHHHHHHHHHCCCcEEEEEecccCCC
Confidence 99999999999998656677777888888888877677889988765443 346678888889999999998764433
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhH---HhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhc
Q 015826 204 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH---VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (399)
Q Consensus 204 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~ 280 (399)
.++..+++++.++++.++++|+++++|+|+.+..... .+.. +..++..++..||..+|..++.+++++++++
T Consensus 154 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~----g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~- 228 (443)
T TIGR03178 154 EFPHVDDWQLYKGMRELARLGQLLLVHAENPAITSALGEEAPPQ----GGVGADAYLASRPVFAEVEAIRRTLALAKVT- 228 (443)
T ss_pred CcccCCHHHHHHHHHHHHhcCCeEEEeccChHHHHHHHHHHHhc----CCCChhHhcCcCCHHHHHHHHHHHHHHHHHh-
Confidence 3456788999999999999999999999998765533 3322 3345556778999999999999999999986
Q ss_pred cCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcC
Q 015826 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360 (399)
Q Consensus 281 ~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G 360 (399)
|+++|++|+|+. +++++++++|++|+++++|+|||||.++++++...++.++++||||+++++++||+++++|
T Consensus 229 ------g~~vhi~Hiss~-~~~~~i~~~~~~g~~it~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G 301 (443)
T TIGR03178 229 ------GCRVHVVHLSSA-EAVELITEAKQEGLDVTVETCPHYLTLTAEEVPDGGTLAKCAPPIRDLANQEGLWEALLNG 301 (443)
T ss_pred ------CCCEEEEeCCCH-HHHHHHHHHHHCCCcEEEEECccceEecHHHhhCcCcceEEcCCCCChHHHHHHHHHHHcC
Confidence 899999999998 8999999999999999999999999999988877788999999999999999999999999
Q ss_pred CccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 361 ~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
++|+|+|||+||+.++|. ..+|+.+|+|++|+|+.+
T Consensus 302 ~i~~i~SDh~p~~~~~K~--~~~~~~~~~G~~g~e~~l 337 (443)
T TIGR03178 302 LIDCVVSDHSPCTPDLKR--AGDFFKAWGGIAGLQSTL 337 (443)
T ss_pred CccEEeCCCCCCChHHcC--cCChhhCCCCeeEHHHhH
Confidence 999999999999988884 258999999999999864
No 11
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=100.00 E-value=2.8e-55 Score=435.10 Aligned_cols=340 Identities=53% Similarity=0.914 Sum_probs=290.4
Q ss_pred cEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHHHH
Q 015826 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTK 123 (399)
Q Consensus 44 ~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~ 123 (399)
|++|+|++|+++++..+++|+|+||||++|++..... .+.++||++|++|+|||||+|+|+..++...++++.+.++
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~I~~g~I~~i~~~~~~~---~~~~~iDa~G~~v~PG~ID~H~H~~~~~~~~~e~~~~~s~ 77 (447)
T cd01315 1 DLVIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANT---EAEEVIDAGGLVVMPGLIDTHVHINEPGRTEWEGFETGTK 77 (447)
T ss_pred CEEEECCEEECCCCceEeEEEEECCEEEEEeCCCCCC---CCCeEEECCCCEEeccEeeceeccCCCCccccccHHHHHH
Confidence 5789999999987777899999999999998754311 3568999999999999999999999877777889999999
Q ss_pred HHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCCCC
Q 015826 124 AAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN 203 (399)
Q Consensus 124 ~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~ 203 (399)
+++++||||+++|+.++.|.....+.++..++.......++++++++.... ..++++++.+.|+.+||+++.++...
T Consensus 78 aal~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~ei~~l~~~G~~giKv~~~~~~~~ 154 (447)
T cd01315 78 AAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVPG---NLDQLRPLDEAGVVGFKCFLCPSGVD 154 (447)
T ss_pred HHHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecCC---CHHHHHHHHHcCCcEEEEEecccCCC
Confidence 999999999999986556777778888888887766678888877654433 46678888889999999998764333
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCC
Q 015826 204 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283 (399)
Q Consensus 204 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~ 283 (399)
.++..+.+++.+++++++++|+++++|+++.+.+.....+.. ..+..++..++.++|..+|..++.+++.+++++
T Consensus 155 ~~~~~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~-~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~---- 229 (447)
T cd01315 155 EFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAK-AKGKRDYRDYLASRPVFTEVEAIQRILLLAKET---- 229 (447)
T ss_pred CcccCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHh-hcCCCChHHhhccCCHHHHHHHHHHHHHHHHHh----
Confidence 344578899999999999999999999999887665444322 222334456678899999999999999999976
Q ss_pred CCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCcc
Q 015826 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID 363 (399)
Q Consensus 284 ~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id 363 (399)
|+++|++|+|+. ++++++++++++|.++++|+|||||.++.+++...++.++++||||++++|++||+++++|.+|
T Consensus 230 ---g~~ihi~h~s~~-~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~g~i~ 305 (447)
T cd01315 230 ---GCRLHIVHLSSA-EAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAANQEQLWEALENGDID 305 (447)
T ss_pred ---CCCEEEEeCCCH-HHHHHHHHHHHCCCceEEEeccccEEEcHHHccCCCCceEECCCCCChHHHHHHHHHHhCCcee
Confidence 899999999998 9999999999999999999999999999988877788999999999999999999999999999
Q ss_pred EEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 364 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 364 ~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
+|+|||+||+.++|..+..+|+.+++|++|+|+.+
T Consensus 306 ~i~SDh~p~~~~~k~~~~~~~~~~~~g~~g~~~~~ 340 (447)
T cd01315 306 MVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGL 340 (447)
T ss_pred EEeCCCCCCCHHHhccCCCChhhCCCCeeEHHHhH
Confidence 99999999999888755568999999999999864
No 12
>PRK02382 dihydroorotase; Provisional
Probab=100.00 E-value=3.3e-55 Score=432.52 Aligned_cols=328 Identities=33% Similarity=0.477 Sum_probs=273.5
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHH
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~ 121 (399)
|.+++|+|++|++.++..+++|+|+||||++|++....+ ++.++||++|++|+|||||+|+|+..++....+++.+.
T Consensus 1 ~~dl~i~n~~v~~~~~~~~~~v~I~dg~I~~i~~~~~~~---~~~~~id~~g~~v~PG~ID~H~H~~~~g~~~~e~~~~~ 77 (443)
T PRK02382 1 MRDALLKDGRVYYNNSLQPRDVRIDGGKITAVGKDLDGS---SSEEVIDARGMLLLPGGIDVHVHFREPGYTHKETWYTG 77 (443)
T ss_pred CceEEEECCEEEeCCCceEEEEEEECCEEEEecCCCCCC---CCCeEEECCCCEEcCCEeeeeeeccCCCCCchhhHHHH
Confidence 468999999999876667899999999999997643211 24579999999999999999999988877777888999
Q ss_pred HHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEE-EEeecCC
Q 015826 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL-KSFMCPS 200 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~i-k~~~~~~ 200 (399)
+++++++||||+++++ ++.|.....+.+...++.+...+.++++++++.. ...++++++.+.|+.++ |+++...
T Consensus 78 ~~aa~~gGvTtv~~~~-~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~~~~~----~~~~~l~~l~~~gv~~~gkv~~~~~ 152 (443)
T PRK02382 78 SRSAAAGGVTTVVDQP-NTDPPTVDGESFDEKAELAARKSIVDFGINGGVT----GNWDPLESLWERGVFALGEIFMADS 152 (443)
T ss_pred HHHHHhCCcEEEEECC-CCCCCCChHHHHHHHHHHhCcCceEEEEEEeeec----cchhhHHHHHhcCccceeEEEEEec
Confidence 9999999999999999 7777777778888877777666778888775432 12456777888899888 7876432
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhc
Q 015826 201 GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (399)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~ 280 (399)
. .. ...+++.+.++++.++++|+++.+|+++.+........ ..+......|+.++|+.+|..++.+++.+|+++
T Consensus 153 ~-~~-~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~---~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~- 226 (443)
T PRK02382 153 T-GG-MGIDEELFEEALAEAARLGVLATVHAEDEDLFDELAKL---LKGDADADAWSAYRPAAAEAAAVERALEVASET- 226 (443)
T ss_pred C-CC-cccCHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhHh---hcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHh-
Confidence 1 11 23577899999999999999999999998875432211 112223456678899999999999999999976
Q ss_pred cCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcC
Q 015826 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360 (399)
Q Consensus 281 ~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G 360 (399)
|+++|++|+|+. ++++++++++ |+||+|||||+++++++...++++||+||||++++|++||+++++|
T Consensus 227 ------g~~~hi~h~ss~-~~~~~i~~~~-----vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~g 294 (443)
T PRK02382 227 ------GARIHIAHISTP-EGVDAARREG-----ITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKRREALWERLNDG 294 (443)
T ss_pred ------CCCEEEEECCCH-HHHHHHHHCC-----cEEEEchhhhhcCHHHHhccCceEEEcCCCCChHHHHHHHHHHhCC
Confidence 899999999999 9999999774 9999999999999998866778899999999999999999999999
Q ss_pred CccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 361 ~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
+||+|+|||+||+.++|.. +|+++|+|++|+|+++
T Consensus 295 ~i~~i~sDh~P~~~~~K~~---~~~~~~~G~~g~e~~~ 329 (443)
T PRK02382 295 TIDVVASDHAPHTREEKDA---DIWDAPSGVPGVETML 329 (443)
T ss_pred CCCEEEcCCCCCCHHHhcC---ChhhCCCCcccHHHHH
Confidence 9999999999999988864 7999999999999875
No 13
>PLN02942 dihydropyrimidinase
Probab=100.00 E-value=1.6e-54 Score=431.50 Aligned_cols=338 Identities=23% Similarity=0.310 Sum_probs=275.1
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCC--CCCcCchH
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG--RTEWEGFP 119 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~--~~~~e~~~ 119 (399)
+.+++|+|++|++++....++|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+.++. ....++++
T Consensus 4 ~~~lli~~~~v~~~~~~~~~~i~I~~g~I~~i~~~~~~~---~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~~~~~ed~~ 80 (486)
T PLN02942 4 STKILIKGGTVVNAHHQELADVYVEDGIIVAVAPNLKVP---DDVRVIDATGKFVMPGGIDPHTHLAMPFMGTETIDDFF 80 (486)
T ss_pred CCcEEEECcEEEcCCCCeEeEEEEECCEEEEEcCCCCCC---CCCeEEECCCCEEecCEeeeeeccCcccCCCcccchHH
Confidence 358899999999977666789999999999998753211 2467999999999999999999999873 45678999
Q ss_pred HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHH-cCCcEEEEeec
Q 015826 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMC 198 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~G~~~ik~~~~ 198 (399)
+++++++++||||++||+.. ......+.++...+.+. +..++++++.+.........++++++.+ .|+.++|.++.
T Consensus 81 s~s~aAl~gGvTTv~D~~~~--~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~e~~~l~~~~gv~~~k~~~~ 157 (486)
T PLN02942 81 SGQAAALAGGTTMHIDFVIP--VNGNLLAGYEAYEKKAE-KSCMDYGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMA 157 (486)
T ss_pred HHHHHHHcCCCeEEEeCCCC--CCCCHHHHHHHHHHHHh-hcCCCEEEEEEecCCcHhHHHHHHHHHHhCCCceEEEEEe
Confidence 99999999999999999621 12223566666555554 4568888776654433333456777754 68889999887
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhh
Q 015826 199 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278 (399)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~ 278 (399)
+++ ....+++.+.++++.++++|.++++|+|+.++.....++.. ..+......++..||+.+|..++.+++.+++.
T Consensus 158 ~~~---~~~~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~-~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~ 233 (486)
T PLN02942 158 YKG---SLMVTDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMI-ELGITGPEGHALSRPPLLEGEATARAIRLAKF 233 (486)
T ss_pred cCC---CCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH-HcCCCChhhhhccCCchHHHHHHHHHHHHHHH
Confidence 642 23458899999999999999999999999887654443221 11222344567789999999999999999987
Q ss_pred hccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCC----CCcceEEcCCCCChhhHHHHH
Q 015826 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDAANKEKLW 354 (399)
Q Consensus 279 ~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~----~~~~~~~~Pplr~~~~~~~l~ 354 (399)
+ |+++|++|+|+. ++++.|+.+|++|++|++|+|||||+|+++++.. .++.+||+||||++++|++||
T Consensus 234 ~-------g~~~~i~H~s~~-~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~ 305 (486)
T PLN02942 234 V-------NTPLYVVHVMSI-DAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQ 305 (486)
T ss_pred h-------CCCEEEEECCCH-HHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHH
Confidence 6 899999999999 9999999999999999999999999999988753 578899999999999999999
Q ss_pred HHHhcCCccEEeCCCCCCCcccccCCcCCcccccCCcchhccc
Q 015826 355 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVG 397 (399)
Q Consensus 355 ~~l~~G~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~ 397 (399)
+++++|++|+|+|||+||+.++|..+.++|+++++|++|+|+.
T Consensus 306 ~~l~~G~i~~igTDh~p~~~~~k~~~~~~~~~~~~G~~g~e~~ 348 (486)
T PLN02942 306 AALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEER 348 (486)
T ss_pred HHhcCCceEEEECCCCCCChHHhhcccCCHhhCCCCcccHHHH
Confidence 9999999999999999999888876556899999999999985
No 14
>PRK01211 dihydroorotase; Provisional
Probab=100.00 E-value=1.1e-54 Score=420.64 Aligned_cols=299 Identities=25% Similarity=0.356 Sum_probs=243.9
Q ss_pred EEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHHHHHHH
Q 015826 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAA 126 (399)
Q Consensus 47 i~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al 126 (399)
|.| +++..+....++|+|+||||++|++.. .+.++||++| +|+|||||+|+|++.++...+|++.+++++|+
T Consensus 3 ~~~-~~~~~~~~~~~di~I~dGkI~~i~~~~------~~~~~ida~g-~vlPG~ID~HvH~r~pg~~~ked~~s~s~AAa 74 (409)
T PRK01211 3 ICG-NFYYKGKFDYLEIEVEDGKIKSIKKDA------GNIGKKELKG-AILPAATDIHVHFRTPGETEKEDFSTGTLSAI 74 (409)
T ss_pred eec-eeEEcCcEEEEEEEEECCEEEEecCCC------CCceEEEecc-EEcCCeEEeeeccCCCCCcccCcHHHHHHHHH
Confidence 444 445454566799999999999998643 1457899999 89999999999999999999999999999999
Q ss_pred cCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCCCCCCC
Q 015826 127 AGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFP 206 (399)
Q Consensus 127 ~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~ 206 (399)
+|||||++||| ++.|...+.+.+..+.+.+...+.+||+++.+....+ . ++.+.|+.++|.|+.+.......
T Consensus 75 aGGvTtv~dmP-nt~P~~~~~e~~~~~~~~a~~~s~vd~~~~~~~~~~~----~---~~~~~g~~~~k~f~~~~~~~~~~ 146 (409)
T PRK01211 75 FGGTTFIMDMP-NNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNN----A---LILDERSIGLKVYMGGTTNTNGT 146 (409)
T ss_pred cCCcEEEEECC-CCCCCCChHHHHHHHHHHhccCceeeEEEEeccCCch----h---hHHhccCcEEEEEcCCCcCCCcc
Confidence 99999999999 6778888899999998888878889999887764322 1 23345999999987542100000
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCC
Q 015826 207 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286 (399)
Q Consensus 207 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~ 286 (399)
...+ ..++.++++|+++.+|+|+.+.+..+.++. .....++.+||..+|..++.+++.++++
T Consensus 147 ~~~~----~~l~~~~~~g~~v~~H~E~~~l~~~~~~~~------~~~~~~~~~rP~~aE~~ai~~~~~la~~-------- 208 (409)
T PRK01211 147 DIEG----GEIKKINEANIPVFFHAELSECLRKHQFES------KNLRDHDLARPIECEIKAVKYVKNLDLK-------- 208 (409)
T ss_pred ccCH----HHHHHHHccCCEEEEeccChHHhhhhhhCc------chHhhCCCCCCHHHHHHHHHHHHHHhCC--------
Confidence 1222 244666789999999999998766443322 1234577899999999999999999974
Q ss_pred CceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEe
Q 015826 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 366 (399)
Q Consensus 287 g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~ 366 (399)
++|++|+|++ +++ .+||||||||||+|++++ .+++++||+||||+++||++||++|++|+||+|+
T Consensus 209 --~~hi~HvSt~-~~~----------~~vt~Ev~phhL~l~~~~--~~~~~~kvnPPLRs~~d~~aL~~~l~dG~ID~i~ 273 (409)
T PRK01211 209 --TKIIAHVSSI-DVI----------GRFLREVTPHHLLLNDDM--PLGSYGKVNPPLRDRWTQERLLEEYISGRFDILS 273 (409)
T ss_pred --CcEEEEecCh-hhc----------CceEEEecHHHHcccccc--ccCCceeEcCCCCCHHHHHHHHHHHhCCCCCEEe
Confidence 4999999998 776 289999999999999887 2678999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 367 SDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 367 sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
|||+||+.++|. +|+++|+|++|+|++|
T Consensus 274 SDHaP~~~~eK~----~~~~a~~G~~gle~~l 301 (409)
T PRK01211 274 SDHAPHTEEDKQ----EFEYAKSGIIGVETRV 301 (409)
T ss_pred CCCCCCChhHhC----CHhhCCCCCCcHHHHH
Confidence 999999988872 6999999999999965
No 15
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=100.00 E-value=4.6e-54 Score=420.48 Aligned_cols=313 Identities=34% Similarity=0.496 Sum_probs=267.4
Q ss_pred eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcC
Q 015826 59 ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 138 (399)
Q Consensus 59 ~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~ 138 (399)
.+++|+|+||||++|++.. .+ .+.++||++|++|+|||||+|+|+..++....+++.+.++.++++||||+++++
T Consensus 4 ~~~~v~I~~g~I~~i~~~~-~~---~~~~~ida~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~- 78 (411)
T TIGR00857 4 TEVDILVEGGRIKKIGKLR-IP---PDAEVIDAKGLLVLPGFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMP- 78 (411)
T ss_pred EEEEEEEECCEEEEeeccC-CC---CCCeEEECCCCEEecCEEEcccCCCCCCCccHhHHHHHHHHHHhCCeEEEEEec-
Confidence 5789999999999997421 11 245799999999999999999999876656678888999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCCh-hhHHHHHHHHHcCCcE--EEEeecCCCCCCCCCCCHHHHHH
Q 015826 139 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA-YNASALEALLNAGVLG--LKSFMCPSGINDFPMTNASHIKE 215 (399)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~G~~~--ik~~~~~~~~~~~~~~~~~~l~~ 215 (399)
++.|.....+.++...+.++....+++.+++++..... ...+++.++.+.|+.+ ++.+ +.+..+++.+.+
T Consensus 79 ~t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~~~Gv~g~~f~~~-------~~~~~~~~~l~~ 151 (411)
T TIGR00857 79 NTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTEAYELKEAGAVGRMFTDD-------GSEVQDILSMRR 151 (411)
T ss_pred CCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEecCCccccHHHHHHHHHCCcEEEEEEeC-------CcccCCHHHHHH
Confidence 66677777788888888877777899998888765432 2466778888889988 5532 123468899999
Q ss_pred HHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcC
Q 015826 216 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 295 (399)
Q Consensus 216 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~ 295 (399)
+++.++++|+++.+|+|+.+++....+..+ ......|+.+||+.+|..++.+++.+++++ ++++||+|+
T Consensus 152 ~~~~a~~~g~~v~iH~E~~~l~~~~~~~~g----~~~~~~~~~~~p~~aE~~ai~~~~~la~~~-------~~~~~i~Hv 220 (411)
T TIGR00857 152 ALEYAAIAGVPIALHAEDPDLIYGGVMHEG----PSAAQLGLPARPPEAEEVAVARLLELAKHA-------GCPVHICHI 220 (411)
T ss_pred HHHHHHHcCCEEEEecCCHHHHhhhhhcCC----cccHhhCCCCCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeC
Confidence 999999999999999999987665444332 234567889999999999999999999976 899999999
Q ss_pred CChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCCCcc
Q 015826 296 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPE 375 (399)
Q Consensus 296 s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~~~~ 375 (399)
|+. +++++|+++|++|++|+||||||||++++++++.+++++||+||||++++|++||+++++|.||+|+|||+||+.+
T Consensus 221 s~~-~~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~g~i~~i~sDh~p~~~~ 299 (411)
T TIGR00857 221 STK-ESLELIVKAKSQGIKITAEVTPHHLLLSEEDVARLDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLE 299 (411)
T ss_pred CCH-HHHHHHHHHHHcCCcEEEeechhhheecHHHHhCCCccEEEcCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCChH
Confidence 999 9999999999999999999999999999998877788999999999999999999999999999999999999988
Q ss_pred cccCCcCCcccccCCcchhcccc
Q 015826 376 LKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 376 ~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
+|.. +|+.+++|++|+|+++
T Consensus 300 ~k~~---~~~~~~~G~~g~e~~~ 319 (411)
T TIGR00857 300 EKTK---EFAAAPPGIPGLETAL 319 (411)
T ss_pred HccC---CHhhCCCCceeHHHHH
Confidence 8853 7999999999999854
No 16
>PRK08323 phenylhydantoinase; Validated
Probab=100.00 E-value=2.1e-53 Score=423.21 Aligned_cols=336 Identities=27% Similarity=0.394 Sum_probs=278.3
Q ss_pred ccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCC--CCCcCchHH
Q 015826 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG--RTEWEGFPS 120 (399)
Q Consensus 43 ~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~--~~~~e~~~~ 120 (399)
++++|+|++|+++++..+++|+|+||||++|++. . +.++||++|++|+|||||+|+|+..+. ....++++.
T Consensus 1 ~d~li~n~~v~~~~~~~~~~v~I~~g~I~~i~~~---~----~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~e~~~~ 73 (459)
T PRK08323 1 MSTLIKNGTVVTADDTYKADVLIEDGKIAAIGAN---L----GDEVIDATGKYVMPGGIDPHTHMEMPFGGTVSSDDFET 73 (459)
T ss_pred CcEEEECCEEEcCCCceEEEEEEECCEEEEEecC---C----CceEEECCCCEEeccEEeeeeccccccCCccccCcHHH
Confidence 3689999999998877789999999999999864 1 457999999999999999999998763 346788889
Q ss_pred HHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCC
Q 015826 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPS 200 (399)
Q Consensus 121 ~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~ 200 (399)
.++.++++||||+++|+ ++.|.....+.++...+.......++++++........+.+++++++++.|+.++|+++.++
T Consensus 74 ~~~~a~~~GvTt~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~ 152 (459)
T PRK08323 74 GTRAAACGGTTTIIDFA-LQPKGQSLREALEAWHGKAAGKAVIDYGFHMIITDWNEVVLDEMPELVEEGITSFKLFMAYK 152 (459)
T ss_pred HHHHHHhCCCCEEEeCc-CCCCCCChHHHHHHHHHHhccCceEEEEEEEEecCCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 99999999999999998 44454556667776666655667788877655433344456788888889999999988654
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhc
Q 015826 201 GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (399)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~ 280 (399)
+ .+.+++++++++++.|+++|.++++|+++.+.+.....+.. ..+......|+..+|..+|..++.+++++++.+
T Consensus 153 ~---~~~~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~-~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~- 227 (459)
T PRK08323 153 G---ALMLDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLL-AEGKTGPEYHALSRPPEVEGEATNRAIMLAELA- 227 (459)
T ss_pred C---CCCCCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHH-HcCCCChhhhhccCCHHHHHHHHHHHHHHHHHh-
Confidence 2 34679999999999999999999999998776543332210 112333445778899999999999999999976
Q ss_pred cCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCC----CCcceEEcCCCCChhhHHHHHHH
Q 015826 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDAANKEKLWEA 356 (399)
Q Consensus 281 ~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~----~~~~~~~~Pplr~~~~~~~l~~~ 356 (399)
++++|++|+|+. +++++|+.+|++|++|+||+|||||+++.+.+.. +|..+|++||||+++++++||++
T Consensus 228 ------~~~~~i~H~s~~-~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~~~~~~~~~~g~~~k~~pPlr~~~~~~~l~~~ 300 (459)
T PRK08323 228 ------GAPLYIVHVSCK-EALEAIRRARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRG 300 (459)
T ss_pred ------CCCEEEEeCCCH-HHHHHHHHHHHCCCeEEEEcCccceeecHHHhcCCccccccceEECCCCCChHHHHHHHHH
Confidence 899999999998 9999999999999999999999999999987754 36789999999999999999999
Q ss_pred HhcCCccEEeCCCCCCCccccc-CCcCCcccccCCcchhcccc
Q 015826 357 LMDGHIDMLSSDHSPTVPELKL-LDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 357 l~~G~id~i~sdh~p~~~~~k~-~~~~~~~~~~~G~~g~e~~l 398 (399)
+++|.+|+|+|||+||+.++|. .+.++|+.+|+|++|+|+.+
T Consensus 301 l~~G~i~~i~sDh~p~~~~~~~~~~~~~~~~~p~G~~~~e~~~ 343 (459)
T PRK08323 301 LQDGDLQVVATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRM 343 (459)
T ss_pred hhcCCeeEEECCCCCCChHHhcccccCCHhhCCCCcchHhhhH
Confidence 9999999999999999987774 34457999999999999764
No 17
>PRK09060 dihydroorotase; Validated
Probab=100.00 E-value=1.6e-53 Score=419.84 Aligned_cols=324 Identities=30% Similarity=0.477 Sum_probs=266.4
Q ss_pred ccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHHH
Q 015826 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122 (399)
Q Consensus 43 ~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~ 122 (399)
++++|+|++|+++++...++|.|+||+|++|++.... ++.++||++|++|+|||||+|+|+..++...++++.+.+
T Consensus 5 ~d~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~----~~~~~iD~~G~~v~PG~ID~HvH~~~~~~~~~e~~~t~~ 80 (444)
T PRK09060 5 FDLILKGGTVVNPDGEGRADIGIRDGRIAAIGDLSGA----SAGEVIDCRGLHVLPGVIDSQVHFREPGLEHKEDLETGS 80 (444)
T ss_pred CcEEEECCEEECCCCCeeeEEEEECCEEEEecCCCCC----CCceEEECCCCEEccCEEeccccccCCCCCccchHHHHH
Confidence 5789999999998877789999999999999864321 245799999999999999999999888877888999999
Q ss_pred HHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHH-cCCcEEEEeecCCC
Q 015826 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMCPSG 201 (399)
Q Consensus 123 ~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~G~~~ik~~~~~~~ 201 (399)
++++++||||+++|+ ++.|...+.+.+...++.+.....++++++++....+. +++.++.. .|+.++|.|+....
T Consensus 81 ~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~---~~l~el~~~~gv~g~k~fm~~~~ 156 (444)
T PRK09060 81 RAAVLGGVTAVFEMP-NTNPLTTTAEALADKLARARHRMHCDFAFYVGGTRDNA---DELAELERLPGCAGIKVFMGSST 156 (444)
T ss_pred HHHHhCCcEEEEECC-CCCCCCChHHHHHHHHHHhcccceeeEEEEeccCCCCH---HHHHHHHhhcCceEEEEEeccCC
Confidence 999999999999999 67777778888888888777667889988875543332 33444422 48899998875421
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhH--HhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhh
Q 015826 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH--VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDT 279 (399)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~ 279 (399)
......++..+.+++++ .|.++.+|+|+.+.+... +.+. + ....++.+||+.+|..++++++.+++++
T Consensus 157 -~~~~~~d~~~l~~~~~~---~~~~v~~H~E~~~l~~~~~~~~~~----g--~~~~~~~~~p~~aE~~av~~~~~la~~~ 226 (444)
T PRK09060 157 -GDLLVEDDEGLRRILRN---GRRRAAFHSEDEYRLRERKGLRVE----G--DPSSHPVWRDEEAALLATRRLVRLARET 226 (444)
T ss_pred -CCcccCCHHHHHHHHHh---CCCeEEEECCCHHHHHHHHHHHhc----C--CcccccccCCHHHHHHHHHHHHHHHHHH
Confidence 11223466667776544 589999999998875422 2211 1 3445677899999999999999999986
Q ss_pred ccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEcccccccccccc-CCCCCcceEEcCCCCChhhHHHHHHHHh
Q 015826 280 RTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE-IPDGDTRFKCAPPIRDAANKEKLWEALM 358 (399)
Q Consensus 280 ~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~-~~~~~~~~~~~Pplr~~~~~~~l~~~l~ 358 (399)
|+|+|++|+|+. +++++++++|+ .+|||+|||||+|++++ +..+++++|++||||++++|++||++++
T Consensus 227 -------~~~lhi~h~st~-~~v~~i~~~~~---~vt~ev~ph~l~l~~~~~~~~~~~~~k~~PPlr~~~~~~~l~~al~ 295 (444)
T PRK09060 227 -------GRRIHVLHVSTA-EEIDFLADHKD---VATVEVTPHHLTLAAPECYERLGTLAQMNPPIRDARHRDGLWRGVR 295 (444)
T ss_pred -------CCCEEEEeCCCH-HHHHHHHHhCC---CeEEEeChHHhccCchhhcccCCceEEEeCCCCCHHHHHHHHHHHh
Confidence 999999999999 99999998875 39999999999999987 6667889999999999999999999999
Q ss_pred cCCccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 359 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 359 ~G~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
+|+||+++|||+||+.++|.. +|+++++|++|+|+++
T Consensus 296 ~G~id~i~sDh~p~~~~~k~~---~~~~~~~G~~g~e~~~ 332 (444)
T PRK09060 296 QGVVDVLGSDHAPHTLEEKAK---PYPASPSGMTGVQTLV 332 (444)
T ss_pred CCCccEEecCCCCCCHHHhcC---CcccCCCCcccHHHHH
Confidence 999999999999999988864 7999999999999864
No 18
>PRK07575 dihydroorotase; Provisional
Probab=100.00 E-value=1.8e-53 Score=418.93 Aligned_cols=328 Identities=27% Similarity=0.423 Sum_probs=266.4
Q ss_pred CccEEEEccEEEcCCC-ceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHH
Q 015826 42 YNQYWLTSKRIVTPKG-VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 120 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~-~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~ 120 (399)
|++++|+|++|+++++ ...++|.|+||||++|++....+ .+.++||++|++|+|||||+|+|+..++..+++++++
T Consensus 2 ~~~~~i~~~~i~~~~~~~~~~~I~I~dg~I~~ig~~~~~~---~~~~vid~~g~~v~PG~ID~H~H~~~~~~~~~e~~~~ 78 (438)
T PRK07575 2 MMSLLIRNARILLPSGELLLGDVLVEDGKIVAIAPEISAT---AVDTVIDAEGLTLLPGVIDPQVHFREPGLEHKEDLFT 78 (438)
T ss_pred cceEEEECCEEECCCCCEEeeeEEEECCEEEEecCCCCCC---CCCeEEECCCCEEcccEEEeeeccCCCCCcCcchHHH
Confidence 5678999999998766 45789999999999998753211 1357899999999999999999998887778899999
Q ss_pred HHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCC
Q 015826 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPS 200 (399)
Q Consensus 121 ~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~ 200 (399)
.+++++++||||++||+ ++.|...+.+.+...++.+.....++++++++..+. ...++..+ .|+.++|.|+...
T Consensus 79 ~~~aa~~gGvTt~~dmp-~~~p~~~~~~~~~~~~~~a~~~~~v~~~~~~~~~~~---~l~~l~~~--~~~~g~~~f~~~~ 152 (438)
T PRK07575 79 ASRACAKGGVTSFLEMP-NTKPLTTTQAALDDKLARAAEKCVVNYGFFIGATPD---NLPELLTA--NPTCGIKIFMGSS 152 (438)
T ss_pred HHHHHHhCCEEEEEECC-CCCCCCCcHHHHHHHHHHhccCcEEEEEEEcccccc---CHHHHHHh--hCCeEEEEEEeeC
Confidence 99999999999999999 777888888889888888777778999988766532 23344332 3677899886432
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhc
Q 015826 201 GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (399)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~ 280 (399)
. ...+..+...+++++ ++.+.++.+|+|+.+.+...... ..++.....++..+|+.+|..++.+++++++++
T Consensus 153 ~-~~~~~~~~~~~~~~~---~~~~~~v~~h~e~~~l~~~~~~~---~~g~~~~~~~~~~~p~~aE~~av~~~~~la~~~- 224 (438)
T PRK07575 153 H-GPLLVDEEAALERIF---AEGTRLIAVHAEDQARIRARRAE---FAGISDPADHSQIQDEEAALLATRLALKLSKKY- 224 (438)
T ss_pred C-CCcccCcHHHHHHHH---HhCCCEEEEeCcChHHHHhhhHh---hccCcCcccccccCcHHHHHHHHHHHHHHHHHH-
Confidence 1 111122344555443 36799999999998864322211 122334456677899999999999999999986
Q ss_pred cCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcC
Q 015826 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360 (399)
Q Consensus 281 ~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G 360 (399)
|+++|++|+|++ +++++++++| +..++||||||||+|+++++...++.+|++||||++++|++||+++++|
T Consensus 225 ------g~~lhi~HiSt~-~~v~~i~~~k--~~~vt~ev~phhL~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G 295 (438)
T PRK07575 225 ------QRRLHILHLSTA-IEAELLRQDK--PSWVTAEVTPQHLLLNTDAYERIGTLAQMNPPLRSPEDNEALWQALRDG 295 (438)
T ss_pred ------CCCEEEEECCCH-HHHHHHHHhc--CCCEEEEEchhhheeCHHHHhCCCceEEEeCCCCCHHHHHHHHHHHhCC
Confidence 999999999999 9999999887 4789999999999999998876788999999999999999999999999
Q ss_pred CccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 361 ~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
+||+|+|||+||+.++|.. +|+++|+|++|+|+.|
T Consensus 296 ~id~i~sDh~p~~~~~k~~---~~~~~~~G~~g~e~~l 330 (438)
T PRK07575 296 VIDFIATDHAPHTLEEKAQ---PYPNSPSGMPGVETSL 330 (438)
T ss_pred CCCEEecCCCCCCHHHccC---CcccCCCCcccHHHHH
Confidence 9999999999999988863 7999999999999875
No 19
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=100.00 E-value=5.7e-53 Score=418.60 Aligned_cols=338 Identities=27% Similarity=0.391 Sum_probs=277.9
Q ss_pred EEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCC--CCcCchHHHH
Q 015826 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--TEWEGFPSGT 122 (399)
Q Consensus 45 ~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~--~~~e~~~~~~ 122 (399)
++|+|++|+++++..+++|+|+||||++|++....+ .+.++||++|++|||||||+|+|+.++.. .+.++++..+
T Consensus 1 lli~~~~v~~~~~~~~~~i~I~~g~I~~ig~~~~~~---~~~~viD~~g~~vlPGlID~H~H~~~~~~~~~~~e~~~~~~ 77 (447)
T cd01314 1 LIIKNGTIVTADGSFKADILIEDGKIVAIGPNLEAP---GGVEVIDATGKYVLPGGIDPHTHLELPFMGTVTADDFESGT 77 (447)
T ss_pred CEEECCEEECCCCceeeeEEEECCEEEEeeCCCCCC---CCceEEECCCCEEecCEEeccccccccccCccCcchHHHHH
Confidence 479999999988777899999999999998753221 24579999999999999999999987653 4678899999
Q ss_pred HHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCCC
Q 015826 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI 202 (399)
Q Consensus 123 ~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~ 202 (399)
+.++.+||||++||+ ++.|.....+.++...+.......++++++........+.+++++++.+.|+.++|.++.++.
T Consensus 78 ~~a~~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~g~~~ik~~~~~~~- 155 (447)
T cd01314 78 RAAAAGGTTTIIDFA-IPNKGQSLLEAVEKWRGKADGKSVIDYGFHMIITDWTDSVIEELPELVKKGISSFKVFMAYKG- 155 (447)
T ss_pred HHHHhCCCcEEEeCC-CCCCCCCHHHHHHHHHHHhcCCCcccEEEEEeecCCChHHHHHHHHHHHcCCCEEEEEeccCC-
Confidence 999999999999998 455545556777766666556667787776554433444567788888889999999887642
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccC
Q 015826 203 NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTD 282 (399)
Q Consensus 203 ~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~ 282 (399)
.+.++++.+++++++|+++|+++++|+|+........++.. ..+......|+..+|+.+|..++.+++.+++.+
T Consensus 156 --~~~~s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~-~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~--- 229 (447)
T cd01314 156 --LLMVDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLL-AQGKTGPEYHALSRPPEVEAEATARAIRLAELA--- 229 (447)
T ss_pred --CCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH-HcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHh---
Confidence 24579999999999999999999999998876554433210 112233345677899999999999999999865
Q ss_pred CCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCC--C-CCcceEEcCCCCChhhHHHHHHHHhc
Q 015826 283 GPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP--D-GDTRFKCAPPIRDAANKEKLWEALMD 359 (399)
Q Consensus 283 ~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~--~-~~~~~~~~Pplr~~~~~~~l~~~l~~ 359 (399)
++++|++|+|+. ++++.|+.+|++|+++++++|||||+++++.+. . .|+.+|++||||++++|++||+++++
T Consensus 230 ----~~~~~~~H~s~~-~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~~~g~~~~~~pplr~~~~~~~l~~~l~~ 304 (447)
T cd01314 230 ----GAPLYIVHVSSK-EAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALWDGLSS 304 (447)
T ss_pred ----CCCEEEEeCCCH-HHHHHHHHHHHCCCeEEEecCchhheeCHHHhccccccccceEECCCCCChHHHHHHHHHHhC
Confidence 899999999999 999999999999999999999999999998773 2 57889999999999999999999999
Q ss_pred CCccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 360 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 360 G~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
|.+|+|+|||+||+.++|.....+|+++|+|++|+|+.+
T Consensus 305 G~i~~igsDh~~~~~~~k~~~~~~~~~~~~G~~g~e~~l 343 (447)
T cd01314 305 GTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRM 343 (447)
T ss_pred CCeeEEECCCCCCCHHHhhcccCCHhhCCCCCchHhhhH
Confidence 999999999999998888654458999999999999864
No 20
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.2e-53 Score=386.43 Aligned_cols=340 Identities=26% Similarity=0.339 Sum_probs=298.9
Q ss_pred ccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCC--CCCCcCchHH
Q 015826 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPS 120 (399)
Q Consensus 43 ~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~--~~~~~e~~~~ 120 (399)
.+++|+||+|++.+....+||+++||.|.+|++....+ .+.++||++|++|+||.||.|||+.+| |...++|+..
T Consensus 14 ~rllikgg~vvN~d~~~~aDV~vedGiI~~vg~~l~ip---gg~~~ida~g~~ViPGgID~Hthlq~p~~G~ts~DdF~~ 90 (522)
T KOG2584|consen 14 NRLLIKGGRVVNDDQSFKADVYVEDGIIKEVGENLIIP---GGVKVIDATGKMVIPGGIDPHTHLQMPFMGMTSVDDFFQ 90 (522)
T ss_pred cceeeeCCEEEccCCceeeeEEeccCEEEEecccEEcC---CCceEEecCCcEEecCccCccceeccccCCccchhhhhc
Confidence 57999999999999888999999999999999986654 377899999999999999999999998 7789999999
Q ss_pred HHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHH-cCCcEEEEeecC
Q 015826 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMCP 199 (399)
Q Consensus 121 ~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~G~~~ik~~~~~ 199 (399)
++++|+.+|+|+++|++.+. +.....+.++.+++.+..+..|||++|.+++.......++++-+.+ .|+.+|++||.+
T Consensus 91 GTkAAlaGGtTmiID~vlp~-~~~slv~afe~wr~~Ad~k~cCDyglhv~It~W~~~v~eem~~l~~ekGvnsF~~fmay 169 (522)
T KOG2584|consen 91 GTKAALAGGTTMIIDFVLPD-KGTSLVEAFEKWREWADPKVCCDYGLHVGITWWSPSVKEEMEILVKEKGVNSFKFFMAY 169 (522)
T ss_pred ccHHHhcCCceEEEEEecCC-CCchHHHHHHHHHhhcCCceeeeeeeeEeeeecCcchHHHHHHHhhhcCcceEEeeeee
Confidence 99999999999999998543 3445678889999998889999999999998876666677777764 799999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhh
Q 015826 200 SGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDT 279 (399)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~ 279 (399)
. +.+++++++|.+++..++++|...++|+|+.+.+.+..++.. +.+...+..|..+||+..|.+++.+++.+|+..
T Consensus 170 k---~~~~v~d~~lye~l~~~~~lgala~vHAEngd~iae~q~~~l-~~gitgPEgh~lSRPee~EaEA~~rai~ia~~~ 245 (522)
T KOG2584|consen 170 K---DLYMVRDSELYEALKVCAELGALAMVHAENGDAIAEGQQRLL-ELGITGPEGHELSRPEELEAEATNRAITIARQA 245 (522)
T ss_pred c---cccccCHHHHHHHHHHHhhcchhheehhhcchhhhhhhhHHH-HcCCcCcccccccCchhhhHHHHHHHHHHHHhc
Confidence 5 456789999999999999999999999999998765554443 334445556778999999999999999999975
Q ss_pred ccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCC----CCcceEEcCCCCChh-hHHHHH
Q 015826 280 RTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDAA-NKEKLW 354 (399)
Q Consensus 280 ~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~----~~~~~~~~Pplr~~~-~~~~l~ 354 (399)
++|++++|+.+. .+.++|..+|++|.-+..|+..-.|..+...+.+ ..+.|+++||||+.. +++.||
T Consensus 246 -------ncPlyvvhVmsk-saa~~Ia~aRk~g~~v~gepita~l~~dg~hy~~~~w~~Aa~~v~sPPlr~d~~t~~~L~ 317 (522)
T KOG2584|consen 246 -------NCPLYVVHVMSK-SAADAIALARKKGRVVFGEPITASLGTDGSHYWSKDWDHAAAFVTSPPLRPDPTTPDGLM 317 (522)
T ss_pred -------CCCcceEEEeeh-hHHHHHHHHHhcCceeecccchhhhcccchhhccCChhhcceeeeCCCCCCCCCCHHHHH
Confidence 999999999998 8999999999999999999888888877655433 246899999999776 999999
Q ss_pred HHHhcCCccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 355 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 355 ~~l~~G~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
++|+.|.+..++||||||+.+.|.++++||.++|.|+.|+|..+
T Consensus 318 ~lLa~g~L~~tgSdhctf~~~qKalgKddFt~ip~GvnGvedrM 361 (522)
T KOG2584|consen 318 DLLAEGDLQLTGSDHCTFTTEQKALGKDDFTKIPNGVNGVEDRM 361 (522)
T ss_pred HHHhcCccceeecCCCCCCHHHHhhccCccccCCCccccccccc
Confidence 99999999999999999999999999999999999999999765
No 21
>PRK09357 pyrC dihydroorotase; Validated
Probab=100.00 E-value=2.6e-52 Score=410.86 Aligned_cols=328 Identities=32% Similarity=0.456 Sum_probs=273.8
Q ss_pred cEEEEccEEEcCCC-ceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHHH
Q 015826 44 QYWLTSKRIVTPKG-VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122 (399)
Q Consensus 44 ~~li~n~~vv~~~~-~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~ 122 (399)
+++|+|++|+++++ ..+++|.|+||+|++|++... . ++.++||++|++|+|||||+|+|++.++....+++...+
T Consensus 2 ~~~i~~~~v~~~~~~~~~~~I~I~dg~I~~i~~~~~-~---~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~~~e~~~~~~ 77 (423)
T PRK09357 2 MILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIE-A---EGAEVIDATGLVVAPGLVDLHVHLREPGQEDKETIETGS 77 (423)
T ss_pred cEEEEeEEEECCCCCcceeeEEEECCEEEEeeCCCC-C---CCCeEEECCCCEEeCCEEecccccCCCCccccccHHHHH
Confidence 58999999998754 457999999999999986421 1 246799999999999999999999887767788999999
Q ss_pred HHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCC-ChhhHHHHHHHHHcCCcEEEEeecCCC
Q 015826 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMCPSG 201 (399)
Q Consensus 123 ~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~G~~~ik~~~~~~~ 201 (399)
+.++++||||+++|+ ++.|.....+.++...+.+...+..++..++.+... ..+..+++.++.+.|+..++.+
T Consensus 78 ~~a~~~GvTt~~d~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~----- 151 (423)
T PRK09357 78 RAAAAGGFTTVVAMP-NTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKGLAGEELTEFGALKEAGVVAFSDD----- 151 (423)
T ss_pred HHHHhCCCeEEEecC-CCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEEeCCCCccHHHHHHHHhCCcEEEECC-----
Confidence 999999999999999 666777777788877777766677788777655322 2234667777777787666532
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhcc
Q 015826 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 281 (399)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~ 281 (399)
..+..+++.++++++.|+++|+++++|+++.......+.+. +......++..+|..+|..++.+++.+|+++
T Consensus 152 --~~~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~~~~~~----g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~-- 223 (423)
T PRK09357 152 --GIPVQDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNE----GEVSARLGLPGIPAVAEEVMIARDVLLAEAT-- 223 (423)
T ss_pred --CcccCCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhcccccC----ChhhHHhCCCCCCHHHHHHHHHHHHHHHHHH--
Confidence 12346889999999999999999999999877644333322 2233445678899999999999999999976
Q ss_pred CCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCC
Q 015826 282 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 361 (399)
Q Consensus 282 ~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~ 361 (399)
|+++|++|+++. +++++++.++++|+.|++|+|||||+++++++..+++.+|++||||+++++++||+++++|.
T Consensus 224 -----g~~~hi~H~s~~-~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~l~~~l~~G~ 297 (423)
T PRK09357 224 -----GARVHICHVSTA-GSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYKVNPPLRTEEDREALIEGLKDGT 297 (423)
T ss_pred -----CCcEEEEeCCCH-HHHHHHHHHHHcCCCEEEEechHHheEcHHHHhCcCCceEECCCCCCHHHHHHHHHHHHcCC
Confidence 899999999999 99999999999999999999999999999988777889999999999999999999999999
Q ss_pred ccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 362 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 362 id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
+++++|||+||+.++|.. +|+++|+|++|+|+.+
T Consensus 298 ~~~i~sDh~p~~~~~k~~---~~~~~~~G~~g~e~~~ 331 (423)
T PRK09357 298 IDAIATDHAPHAREEKEC---EFEAAPFGITGLETAL 331 (423)
T ss_pred CeEEecCCCCCChHHccC---CHhhCCCCceEHHHHH
Confidence 999999999999888863 6999999999999864
No 22
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=100.00 E-value=3.1e-52 Score=414.56 Aligned_cols=338 Identities=28% Similarity=0.400 Sum_probs=272.0
Q ss_pred EEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCC--CCCCcCchHHHH
Q 015826 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSGT 122 (399)
Q Consensus 45 ~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~--~~~~~e~~~~~~ 122 (399)
++|+|++|+++++..+++|+|+||+|++|++....+ ++.++||++|++|||||||+|+|+.++ +..+.++++.++
T Consensus 1 ~li~n~~vv~~~~~~~~~V~I~dg~I~~Ig~~~~~~---~~~~vIDa~G~~vlPGlID~H~H~~~~~~~~~~~e~~~~~s 77 (454)
T TIGR02033 1 KLIRGGTVVNADDVFQADVLIEGGKIVAVGRNLSPP---DAVEEIDATGKYVMPGGIDVHTHLEMPFGGTVTADDFFTGT 77 (454)
T ss_pred CEEECcEEEcCCCceEEEEEEECCEEEEecCCCCCC---CCCcEEECCCCEEecCEecceeccCcccCCCCCcchHHHHH
Confidence 479999999988777899999999999998753221 245799999999999999999999876 355678899999
Q ss_pred HHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHH-HHHHHHcCCcEEEEeecCCC
Q 015826 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA-LEALLNAGVLGLKSFMCPSG 201 (399)
Q Consensus 123 ~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~G~~~ik~~~~~~~ 201 (399)
++++++||||++||+ ++.|.....+.++...+.......++++.+........+..++ ++.+.+.|+..+|.++.++.
T Consensus 78 ~~a~~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~ 156 (454)
T TIGR02033 78 KAAAAGGTTTIIDFA-LPHKGESLTEALETWHEKAEGKSVIDYGFHMMITHWNDEVLEEHIPELVEEGITSFKVFMAYKN 156 (454)
T ss_pred HHHHhCCCCEEEeCc-CCCCCCCHHHHHHHHHHHhccCceEEEEEEecccCCcHHHHHHHHHHHHhcCCcEEEEEeecCC
Confidence 999999999999998 5555445566777666665555677777665432223333344 55556689999999886642
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhcc
Q 015826 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 281 (399)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~ 281 (399)
.+.+++++++++++.|+++|+++++|+|+........++.. ..+......|...+|+.+|..++.+++.+++.+
T Consensus 157 ---~~~~~~~~l~~~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~-~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~-- 230 (454)
T TIGR02033 157 ---LLMVDDEELFEILKRAKELGALLQVHAENGDVIAELQARLL-AQGKTGPEYHALSRPPESEAEAVARAIALAALA-- 230 (454)
T ss_pred ---CCCCCHHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHH-HcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHh--
Confidence 24579999999999999999999999988776543333211 112233345667899999999999999999875
Q ss_pred CCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCC---CCcceEEcCCCCChhhHHHHHHHHh
Q 015826 282 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD---GDTRFKCAPPIRDAANKEKLWEALM 358 (399)
Q Consensus 282 ~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~---~~~~~~~~Pplr~~~~~~~l~~~l~ 358 (399)
++++|++|+|++ ++++.|+.+|+.|++|+||+|||||+++.+++.. ++..+|++||||++++|++||++++
T Consensus 231 -----~~~~~i~H~s~~-~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~~~~~~~~~~~~~~pPlr~~~~~~~l~~~l~ 304 (454)
T TIGR02033 231 -----NAPLYVVHVSTA-SAVDEIAEAREKGQPVYGETCPQYLLLDDTIYDKPGFEGAKYVCSPPLREKEDQDALWSALS 304 (454)
T ss_pred -----CCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEcCchheeecHHHhcCcccccceeEECCCCCChhhHHHHHHHhh
Confidence 899999999998 8999999999999999999999999999988753 5678999999999999999999999
Q ss_pred cCCccEEeCCCCCCCccccc-CCcCCcccccCCcchhcccc
Q 015826 359 DGHIDMLSSDHSPTVPELKL-LDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 359 ~G~id~i~sdh~p~~~~~k~-~~~~~~~~~~~G~~g~e~~l 398 (399)
+|.+|+|+|||+||+.++|+ .++++|+.+|+|++|+|+.+
T Consensus 305 ~G~i~~igtDh~p~~~~~k~~~~~~~~~~~~~G~~g~e~~l 345 (454)
T TIGR02033 305 SGALQTVGSDHCPFNFAQKKAIGKDDFTKIPNGGPGVEERM 345 (454)
T ss_pred cCCeEEEECCCCCCCHHHhhhcccCCHhhCCCCCchHHhHH
Confidence 99999999999999987772 22357999999999999864
No 23
>PRK09236 dihydroorotase; Reviewed
Probab=100.00 E-value=2.4e-51 Score=405.17 Aligned_cols=335 Identities=27% Similarity=0.403 Sum_probs=273.4
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHH
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~ 121 (399)
|++++|+|++|+++++..+++|+|+||+|++|++..... ++.++||++|++|+|||||+|+|+..++....+++.+.
T Consensus 1 ~~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~---~~~~~id~~g~~v~PG~ID~HvH~~~~~~~~~e~~~~~ 77 (444)
T PRK09236 1 MKRILIKNARIVNEGKIFEGDVLIENGRIAKIASSISAK---SADTVIDAAGRYLLPGMIDDQVHFREPGLTHKGDIASE 77 (444)
T ss_pred CccEEEECCEEEcCCCceEeEEEEECCEEEEecCCCCCC---CCCeEEECCCCEECCCEEEcccccccCcccccccHHHH
Confidence 457899999999987767899999999999998653211 24589999999999999999999988777667888899
Q ss_pred HHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCC
Q 015826 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 201 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~ 201 (399)
+++++++||||++||+ ++.|...+.+.+....+.+.....++++++.+.... ..+++.++.+.|+.++|.|+....
T Consensus 78 ~~aa~~~GvTtv~d~p-~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~e~~~l~~~g~~g~k~~~~~~~ 153 (444)
T PRK09236 78 SRAAVAGGITSFMEMP-NTNPPTTTLEALEAKYQIAAQRSLANYSFYFGATND---NLDEIKRLDPKRVCGVKVFMGAST 153 (444)
T ss_pred HHHHHhCCcEEEEeCC-CCCCCcCcHHHHHHHHHHhccCeEEEEEEEeccCcc---cHHHHHHHHHccCcEEEEEeccCC
Confidence 9999999999999999 777777778888887777766778899887654322 367788888889999999875421
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCC-chhhhcCCCCCChHHHHHHHHHHHHHHhhhc
Q 015826 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD-TRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (399)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~ 280 (399)
......+.+.++++++ ..|+++.+|+|+.+.+...........+ ...+..+...||..+|..++.+++++++++
T Consensus 154 -~~~~~~~~~~~~~~~~---~~~~~v~~H~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~rp~~ae~~av~~~~~la~~~- 228 (444)
T PRK09236 154 -GNMLVDNPETLERIFR---DAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRSAEACYKSSSLAVSLAKKH- 228 (444)
T ss_pred -CCcccCcHHHHHHHHH---hcCCEEEEecCCHHHHHHHHHHHHHhcCCCCChhhccccCCHHHHHHHHHHHHHHHHHH-
Confidence 1112234556666654 4589999999998775422221100101 123345566899999999999999999976
Q ss_pred cCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcC
Q 015826 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360 (399)
Q Consensus 281 ~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G 360 (399)
++++|+.|++++ ++++++++++.+|.+++||+|||||+++++++...++.++++||||+++++++||+++++|
T Consensus 229 ------~~~~hi~h~st~-~~~~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G 301 (444)
T PRK09236 229 ------GTRLHVLHISTA-KELSLFENGPLAEKRITAEVCVHHLWFDDSDYARLGNLIKCNPAIKTASDREALRQALADD 301 (444)
T ss_pred ------CCCEEEEeCCCH-HHHHHHHHHHHCCCCEEEEEchhhhhcCHHHHhccCceEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999 9999999999999999999999999999998877788999999999999999999999999
Q ss_pred CccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 361 ~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
.+|+|+|||+||..++|.. +|+++++|++|+|+++
T Consensus 302 ~i~~igtDh~p~~~~~k~~---~~~~~~~G~~~~e~~l 336 (444)
T PRK09236 302 RIDVIATDHAPHTWEEKQG---PYFQAPSGLPLVQHAL 336 (444)
T ss_pred CCcEEECCCCCCCHHHhcC---CcccCCCCcccHHHHH
Confidence 9999999999999888864 7999999999999863
No 24
>PRK04250 dihydroorotase; Provisional
Probab=100.00 E-value=6.6e-51 Score=394.45 Aligned_cols=293 Identities=30% Similarity=0.443 Sum_probs=237.0
Q ss_pred EccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHHHHHHHc
Q 015826 48 TSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAA 127 (399)
Q Consensus 48 ~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~ 127 (399)
.+++|+++.+..+++|+|+||+|++|++. .. ++.++||++|++|+|||||+|+|+..++...++++.+.++++++
T Consensus 2 ~~~~v~~~~~~~~~~i~i~~G~I~~i~~~-~~----~~~~~iD~~g~~v~PG~ID~HvH~~~~~~~~~e~~~~~~~aa~~ 76 (398)
T PRK04250 2 LEGKFLLKGRIVEGGIGIENGRISKISLR-DL----KGKEVIKVKGGIILPGLIDVHVHLRDFEESYKETIESGTKAALH 76 (398)
T ss_pred eeEEEEECCcEEEEEEEEECCEEEEeeCC-CC----CCCeEEECCCCEEccCEEeccccccCCCCCcHHHHHHHHHHHHh
Confidence 36788887777789999999999999741 11 24579999999999999999999987776677889999999999
Q ss_pred CCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCCCCCCCC
Q 015826 128 GGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPM 207 (399)
Q Consensus 128 ~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~ 207 (399)
+||||+++|+ ++.|...+.+.+..+.+.+...+.+||+++. ....+ .+++.++.. ..+|.|+.+.. + .
T Consensus 77 gGvTtv~~~p-~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~---~~~l~~l~~---~~~k~f~~~~~--~--~ 144 (398)
T PRK04250 77 GGITLVFDMP-NTKPPIMDEKTYEKRMRIAEKKSYADYALNF-LIAGN---CEKAEEIKA---DFYKIFMGAST--G--G 144 (398)
T ss_pred CCeEEEEECC-CCCCCCCcHHHHHHHHHHhCcCceeeEEEEE-ecCCC---HHHHHHHHh---hheEEEEecCC--C--c
Confidence 9999999999 7778888899999988888888899999887 44332 344555532 24677764421 1 1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCC
Q 015826 208 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 287 (399)
Q Consensus 208 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g 287 (399)
...+.+... .+ +.+..+.+|+|+.+.+. .+.+||+.+|..++.+++.+++++ |
T Consensus 145 ~~~~~~~~~--~~-~~~~~v~~H~E~~~~~~-----------------~~~~~p~~aE~~av~r~~~la~~~-------~ 197 (398)
T PRK04250 145 IFSENFEVD--YA-CAPGIVSVHAEDPELIR-----------------EFPERPPEAEVVAIERALEAGKKL-------K 197 (398)
T ss_pred hhHHHHHHH--HH-hcCCeEEEEecChhhhh-----------------cccCCCHHHHHHHHHHHHHHHHHh-------C
Confidence 222223221 23 34667999999987532 235789999999999999999986 9
Q ss_pred ceEEEEcCCChhHHHHHHHHHHHCCCC-EEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEe
Q 015826 288 AHLHIVHLSDASSSLDLLMEAKTNGDS-ITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 366 (399)
Q Consensus 288 ~~vhi~H~s~~~~~l~~i~~ak~~G~~-vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~ 366 (399)
+++||+|+|++ +++++|++ +|++ ||||||||||+|+++++ .+++++||+||||+++||++||++|. .||+|+
T Consensus 198 ~~lhi~HvSt~-~~~~~i~~---~g~~~vt~Ev~ph~L~l~~~~~-~~~~~~k~~PPLR~~~d~~aL~~~l~--~Id~i~ 270 (398)
T PRK04250 198 KPLHICHISTK-DGLKLILK---SNLPWVSFEVTPHHLFLTRKDY-ERNPLLKVYPPLRSEEDRKALWENFS--KIPIIA 270 (398)
T ss_pred CCEEEEeCCCH-HHHHHHHH---cCCCcEEEEeCHHHhccCHHHH-CCCCceEEcCCCCCHHHHHHHHHhhc--cCCEEE
Confidence 99999999999 99999954 4887 99999999999999988 47889999999999999999999996 499999
Q ss_pred CCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 367 SDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 367 sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
|||+||+.++|+ .+++|++|+|+++
T Consensus 271 sDHaP~~~~~k~-------~~~~G~~g~e~~l 295 (398)
T PRK04250 271 SDHAPHTLEDKE-------AGAAGIPGLETEV 295 (398)
T ss_pred cCCcccCHHHhh-------cCCCCcchHHHHH
Confidence 999999988884 2579999999875
No 25
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=100.00 E-value=3.7e-50 Score=385.06 Aligned_cols=275 Identities=35% Similarity=0.492 Sum_probs=237.7
Q ss_pred CCEEecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeee
Q 015826 93 EAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 172 (399)
Q Consensus 93 G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (399)
|++|+||+||+|+|+++++...+|++.+++++|++|||||+++|| ++.|...+.+.++...+.++..+.++|++++++.
T Consensus 1 G~~vlPG~iD~HvH~r~pg~~~~ed~~s~t~aA~~GGvTtv~~mP-nt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~~~ 79 (361)
T cd01318 1 GLLILPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMP-NTKPPTTTAEALYEKLRLAAAKSVVDYGLYFGVT 79 (361)
T ss_pred CCEEecCeeEeeecCCCCCCCccCcHHHHHHHHHcCCCEEEEECC-CCCCCCCcHHHHHHHHHHhccCceeEEEEEEeec
Confidence 789999999999999999999999999999999999999999999 8888888999999988888777889999988764
Q ss_pred CCChhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchh
Q 015826 173 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (399)
Q Consensus 173 ~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 252 (399)
.. +++.++.+.|+.++|.|+.+.. +.. ..++..|.+++++++ .++.+|+|+.+.+.....+.+ .
T Consensus 80 ~~-----~~l~~~~~~~~~g~k~f~~~~~-~~~-~~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~------~ 143 (361)
T cd01318 80 GS-----EDLEELDKAPPAGYKIFMGDST-GDL-LDDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELK------G 143 (361)
T ss_pred Ch-----hhHHHHHHhhCcEEEEEEecCC-CCc-CCCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhh------h
Confidence 33 3566666778889999875421 112 257889999998875 789999999987664444322 1
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCC
Q 015826 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 332 (399)
Q Consensus 253 ~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~ 332 (399)
...++.+||+.+|..++.+++.+++++ |+++||+|+|+. +++++|+++| .+|+||+|||||+|+++++.
T Consensus 144 ~~~~~~~~P~~aE~~av~r~~~la~~~-------~~~~hi~Hvs~~-~~~~~i~~~k---~~vt~ev~ph~L~l~~~~~~ 212 (361)
T cd01318 144 ESAHPRIRDAEAAAVATARALKLARRH-------GARLHICHVSTP-EELKLIKKAK---PGVTVEVTPHHLFLDVEDYD 212 (361)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHhC---CCeEEEeCHHHhhcCHHHHh
Confidence 124678999999999999999999976 899999999999 9999999988 68999999999999998877
Q ss_pred CCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 333 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 333 ~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
..|+++|++||||+++||++||+++++|+||+++|||+||..++|.. +|+.+++|++|+|+++
T Consensus 213 ~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~~---~~~~a~~G~~g~e~~l 275 (361)
T cd01318 213 RLGTLGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEKRK---GYPAAPSGIPGVETAL 275 (361)
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhCCCCCEEeeCCCCCCHHHccC---ChhhCCCCCccHHHHH
Confidence 67889999999999999999999999999999999999999888863 6999999999999853
No 26
>PRK00369 pyrC dihydroorotase; Provisional
Probab=100.00 E-value=3.1e-49 Score=380.53 Aligned_cols=273 Identities=28% Similarity=0.357 Sum_probs=221.2
Q ss_pred eeEEEEECCEEEEeccCCCCCCCCCCCcEEeC-CCCEEecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcC
Q 015826 60 SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDY-GEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 138 (399)
Q Consensus 60 ~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~-~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~ 138 (399)
+..|.|++|+|..|++.. + .+.++||+ +|++|+|||||+|+|++.++...++++.+++++|++|||||+++||
T Consensus 13 ~~~~~~~~~~~~~i~~~~--~---~~~~~id~~~G~~vlPG~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mP- 86 (392)
T PRK00369 13 KEIKEICINFDRRIKEIK--S---RCKPDLDLPQGTLILPGAIDLHVHLRGLKLSYKEDVASGTSEAAYGGVTLVADMP- 86 (392)
T ss_pred CceEEEeeeeeeeEeecc--C---CCCceeecCCCCEEeCCEEEcccccCCCCCcccccHHHHHHHHHhCCcEEEEECC-
Confidence 356788889998887652 1 25679999 6999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHH
Q 015826 139 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 218 (399)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~ 218 (399)
++.|...+.+.++.+.+.+...+.+||+++.+.... .+++. +.|+.++|.|.. + ..+.+. ++
T Consensus 87 nt~P~~~~~~~l~~~~~~a~~~~~vd~~~~~~~~~~----~~el~---~~~~~g~k~f~~-----~--~~~~~~----~~ 148 (392)
T PRK00369 87 NTIPPLNTPEAITEKLAELEYYSRVDYFVYSGVTKD----PEKVD---KLPIAGYKIFPE-----D--LEREET----FR 148 (392)
T ss_pred CCCCCCChHHHHHHHHHHhCcCCeEEEEEEeeccCC----HHHHH---HhhCceEEEECC-----C--CchHHH----HH
Confidence 788888889999999988888889999998765321 22343 347788888741 1 123333 34
Q ss_pred HHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh
Q 015826 219 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 298 (399)
Q Consensus 219 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~ 298 (399)
.+.+++.++.+|||+.+.+... ....+|..+|..++.++..+ +++||+|+|++
T Consensus 149 ~~~~~~~~v~~HaE~~~l~~~~---------------~~~~rp~~aE~~ai~~~~~~------------~~lhi~HvSt~ 201 (392)
T PRK00369 149 VLLKSRKLKILHPEVPLALKSN---------------RKLRRNCWYEIAALYYVKDY------------QNVHITHASNP 201 (392)
T ss_pred HHHHhCCEEEEeCCCHHHhhcc---------------hhcccCHHHHHHHHHHHHHh------------CCEEEEECCCH
Confidence 4455669999999998764311 11358888998887776655 35999999998
Q ss_pred hHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCCCccccc
Q 015826 299 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 378 (399)
Q Consensus 299 ~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~~~~~k~ 378 (399)
+++ +.+|++| ++||||||||+|+++ .++.+||+||||+++||++||++|++ ||+|+|||+||+.++|.
T Consensus 202 -~~v---~~ak~~g--vt~Ev~pHhL~l~~~----~~~~~k~~PPLR~~~dr~aL~~~l~~--id~i~SDHaP~~~~~K~ 269 (392)
T PRK00369 202 -RTV---RLAKELG--FTVDITPHHLLVNGE----KDCLTKVNPPIRDINERLWLLQALSE--VDAIASDHAPHSSFEKL 269 (392)
T ss_pred -HHH---HHHHHCC--CeEEechhHheeccC----CCCceEEeCCCCCHHHHHHHHHHHHh--CCEEEeCCCCCCHHHcc
Confidence 664 5667777 899999999999986 26789999999999999999999999 99999999999998885
Q ss_pred CCcCCcccccCCcchhcccc
Q 015826 379 LDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 379 ~~~~~~~~~~~G~~g~e~~l 398 (399)
.+|+++|+|++|+|+++
T Consensus 270 ---~~f~~~~~Gi~GlE~~l 286 (392)
T PRK00369 270 ---QPYEVCPPGIAALSFTP 286 (392)
T ss_pred ---CCHhhCCCCCeeHHHHH
Confidence 37999999999999965
No 27
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=100.00 E-value=8.4e-49 Score=373.34 Aligned_cols=254 Identities=37% Similarity=0.600 Sum_probs=223.5
Q ss_pred CEEecceeecccccCCCCCC-CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeee
Q 015826 94 AVIMPGLIDVHAHLDDPGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 172 (399)
Q Consensus 94 ~~vlPGlID~H~H~~~~~~~-~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (399)
++|+||+||+|+|+++++.. .++++.+++++|++|||||+++|| ++.|...+.+.++...+.+...+.+||+++++..
T Consensus 1 ~~vlPG~iD~HvH~r~pg~~~~~e~~~t~t~aA~~GG~Ttv~~mp-n~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~ 79 (337)
T cd01302 1 LLVLPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMP-NTGPPPIDLPAIELKIKLAEESSYVDFSFHAGIG 79 (337)
T ss_pred CEecCCeeEeeeccCCCCCCCchhHHHHHHHHHHhCCCcEEEECC-CCCCCCCcHHHHHHHHHHhCcCcEeeEEEEEecc
Confidence 57999999999999999877 889999999999999999999999 7888888889998888888777889999987765
Q ss_pred CCChhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchh
Q 015826 173 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (399)
Q Consensus 173 ~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 252 (399)
.+ +..+++.++.+.|+.++|+|+.+... ..+..+++.+.++++.++++|+++.+|+|
T Consensus 80 ~~--~~~~el~~l~~~Gv~g~K~f~~~~~~-~~~~~~~~~l~~~~~~~~~~g~~v~~H~E-------------------- 136 (337)
T cd01302 80 PG--DVTDELKKLFDAGINSLKVFMNYYFG-ELFDVDDGTLMRTFLEIASRGGPVMVHAE-------------------- 136 (337)
T ss_pred Cc--cCHHHHHHHHHcCCcEEEEEEeccCC-CccccCHHHHHHHHHHHHhcCCeEEEeHH--------------------
Confidence 53 25678888888999999999865321 12256889999999999999999999996
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCC
Q 015826 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 332 (399)
Q Consensus 253 ~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~ 332 (399)
+++.+++++ |+++||+|+|+. +++++|+++|++|++||||+|||||+|+++++.
T Consensus 137 ------------------r~~~la~~~-------g~~l~i~Hiss~-~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~ 190 (337)
T cd01302 137 ------------------RAAQLAEEA-------GANVHIAHVSSG-EALELIKFAKNKGVKVTCEVCPHHLFLDESMLR 190 (337)
T ss_pred ------------------HHHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHCCCcEEEEcChhhheeCHHHhh
Confidence 234566654 899999999999 999999999999999999999999999998887
Q ss_pred CCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 333 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 333 ~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
.+++++|++||||++++|++||+++++|+||+|+|||+||+.++|..+ .+|+++|+|++|+|+++
T Consensus 191 ~~~~~~k~~Pplr~~~~~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~-~~~~~a~~G~~g~e~~l 255 (337)
T cd01302 191 LNGAWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPGLETRL 255 (337)
T ss_pred CCCceEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHhccC-CCcccCCCCcccHHHHH
Confidence 778899999999999999999999999999999999999998888643 47999999999999864
No 28
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=100.00 E-value=2.9e-48 Score=375.41 Aligned_cols=290 Identities=35% Similarity=0.479 Sum_probs=253.6
Q ss_pred CcEEeCCCCEEecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeE
Q 015826 86 GQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV 165 (399)
Q Consensus 86 ~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (399)
.++||++|++|+||+||+|+|++.++...++++.+.+++|+.+||||+++|+ ++.|...+.+.++.+.+.+.....+++
T Consensus 2 ~~~iD~~g~~vlPG~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd01317 2 AEVIDAEGKILAPGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMP-NTNPVIDNPAVVELLKNRAKDVGIVRV 80 (374)
T ss_pred CeEEECCCCEEecCEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECC-CCCCCCCCHHHHHHHHHHhccCCceeE
Confidence 4689999999999999999999998887889999999999999999999999 777888888999888888777677788
Q ss_pred EeeeeeeCCCh-hhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhc
Q 015826 166 GFWGGLVPENA-YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLE 244 (399)
Q Consensus 166 ~~~~~~~~~~~-~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~ 244 (399)
.+++++..... +.++++.++.+.|+.+||.+ +++..+...+.++++.++++|.++.+|+|+.+.+....++.
T Consensus 81 ~~~~~~~~~~~~~~~~~i~~l~~~G~~~~k~~-------~~~~~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~~~~~~ 153 (374)
T cd01317 81 LPIGALTKGLKGEELTEIGELLEAGAVGFSDD-------GKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGVMNE 153 (374)
T ss_pred EEEEEEeeCCCcccHHHHHHHHHCCcEEEEcC-------CcCCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhccCccC
Confidence 77777655432 24778888888999999853 12346888999999999999999999999988765444332
Q ss_pred cCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEcccccc
Q 015826 245 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 324 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L 324 (399)
+......++..+|..+|..++.+++.+++++ ++++|+.|+|+. ++++.++++|++|+.+++++|||||
T Consensus 154 ----g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~-------~~~i~i~h~ss~-~~l~~i~~~~~~G~~~~~e~~~h~L 221 (374)
T cd01317 154 ----GKVASRLGLPGIPPEAETIMVARDLELAEAT-------GARVHFQHLSTA-RSLELIRKAKAKGLPVTAEVTPHHL 221 (374)
T ss_pred ----ChhhHHhCCCCCCHHHHHHHHHHHHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHCCCCEEEEecHHHH
Confidence 3445667778999999999999999999986 899999999998 9999999999999999999999999
Q ss_pred ccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 325 AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 325 ~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
+++++++...++++|++||||+++++++||+++++|.+++|+|||+||+.++|.. +|+.+++|++|+|+.+
T Consensus 222 ~ld~~~~~~~~~~~k~~Pplr~~~~~~~l~~~~~~G~i~~igsDh~p~~~~~k~~---~~~~~~~Gi~g~e~~l 292 (374)
T cd01317 222 LLDDEALESYDTNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDL---PFAEAPPGIIGLETAL 292 (374)
T ss_pred hcCHHHHhccCCceEEcCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC---CHhhCCCcHhHHHHHH
Confidence 9999988777889999999999999999999999999999999999999888854 6999999999999864
No 29
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=100.00 E-value=3e-45 Score=347.29 Aligned_cols=248 Identities=31% Similarity=0.488 Sum_probs=200.5
Q ss_pred CEEecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeC
Q 015826 94 AVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP 173 (399)
Q Consensus 94 ~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (399)
.+|+||+||+|+|+++++..+++++.+++++|++||||||+||| ++.|...+.+.++.+.+.+...+.+||+++++...
T Consensus 2 ~~vlPG~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~dmP-nt~P~~~~~~~~~~~~~~a~~~s~vd~~~~~~~~~ 80 (344)
T cd01316 2 TIRLPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMP-NTNPSIVDVASLKLVQSLAQAKARCDYAFSIGATS 80 (344)
T ss_pred eEEeCCeEEeeeccCCCCcCCcChHHHHHHHHHhCCCeEEEECC-CCCCCCCCHHHHHHHHHHhccCcEEeEEEEeeecC
Confidence 47999999999999999998999999999999999999999999 77888888999999988888778999999977655
Q ss_pred CChhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhh
Q 015826 174 ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 253 (399)
Q Consensus 174 ~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 253 (399)
.+. +++.++.. ++.++|.|+.+.. .... .++.........+...+.++.+|+++.
T Consensus 81 ~~~---~~~~~l~~-~~~g~k~f~~~~~-~~~~-~~~~~~~~~~~~~~~~~~p~~~~~e~~------------------- 135 (344)
T cd01316 81 TNA---ATVGELAS-EAVGLKFYLNETF-STLI-LDKITAWASHFNAWPSTKPIVTHAKSQ------------------- 135 (344)
T ss_pred CCH---HHHHHHHh-ccCeEEEEECCCC-CCCc-cchHHHHHHHHHhcccCCCeEEehhhH-------------------
Confidence 443 33444433 3578888875421 1111 222222223334444577777777542
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCC
Q 015826 254 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 333 (399)
Q Consensus 254 ~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~ 333 (399)
.+.+++.+++.+ |+++||+|+|++ +++++|+++|++|++||||||||||+++++++..
T Consensus 136 --------------~~~~~l~la~~~-------g~~lhi~HiSt~-~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~ 193 (344)
T cd01316 136 --------------TLAAVLLLASLH-------NRSIHICHVSSK-EEINLIRLAKARGLKVTCEVSPHHLFLSQDDLPR 193 (344)
T ss_pred --------------HHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHHHHCCCcEEEEechHHeeccHHHhhc
Confidence 456678888875 999999999999 9999999999999999999999999999988754
Q ss_pred CCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 334 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 334 ~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
+.+|++||||+++||++||++|. .||+|+|||+||+.++|.. + ++|+|++|+|++|
T Consensus 194 --~~~k~~PPLR~~~dr~aL~~~l~--~id~i~SDHaP~~~~~K~~---~--~a~~G~~g~e~~l 249 (344)
T cd01316 194 --GQYEVRPFLPTREDQEALWENLD--YIDCFATDHAPHTLAEKTG---N--KPPPGFPGVETSL 249 (344)
T ss_pred --CCceeCCCCcCHHHHHHHHHHHh--cCCEEEcCCCCCCHHHhcC---C--CCCCCcccHHHHH
Confidence 58999999999999999999995 6999999999999888852 2 7899999999975
No 30
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=100.00 E-value=8.3e-43 Score=332.48 Aligned_cols=245 Identities=20% Similarity=0.233 Sum_probs=193.7
Q ss_pred EecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC-ceeEEeeeeeeCC
Q 015826 96 IMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPE 174 (399)
Q Consensus 96 vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 174 (399)
-+||+||+|+|++.+ +++.+.+++|.++| ||+++|+ ++.|...+.+.+..+........ ..++.+++++...
T Consensus 2 ~~Pg~iD~h~h~~~~-----~~~~~~~~aa~~gG-Ttvv~mp-nt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 74 (335)
T cd01294 2 TIPRPDDMHLHLRDG-----AMLKLVLPYTARGF-SRAIVMP-NLKPPVTTTADALAYRERILAADPGPNFTPLMTLYLT 74 (335)
T ss_pred cCCCcceeEecCCCc-----hHHHHHHHHHHhCC-CEEEECC-CCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEecc
Confidence 379999999999974 78889999999999 9999999 67777666676666665555444 4566665555222
Q ss_pred ChhhHHHHHHHHHc-CCcEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchh
Q 015826 175 NAYNASALEALLNA-GVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (399)
Q Consensus 175 ~~~~~~~l~~l~~~-G~~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 252 (399)
.....++++++.+. |+.++|+|+..... .+....+.+.+..+++.++++|++|.+|+++.....
T Consensus 75 ~~~~~~el~~~~~~~G~~g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~-------------- 140 (335)
T cd01294 75 ENTTPEELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKI-------------- 140 (335)
T ss_pred CCCCHHHHHHHHHhCCceEEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCcccc--------------
Confidence 22245788888876 99999998642110 011223568999999999999999999999865411
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCC
Q 015826 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 332 (399)
Q Consensus 253 ~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~ 332 (399)
.+...|...+.+++.++++. +++++||+|+|++ +++++|+++|+ +||||||||||+|+++++.
T Consensus 141 -------~~~~~e~~~~~~~~~lA~~~------p~~~v~i~Hvst~-~~~~~i~~ak~---~vt~Et~ph~L~l~~~~~~ 203 (335)
T cd01294 141 -------DVLDREAKFIPVLEPLAQRF------PKLKIVLEHITTA-DAVEYVKSCNE---NVAATITPHHLLLTRDDLL 203 (335)
T ss_pred -------cchhhHHHHHHHHHHHHHHc------CCCeEEEecccHH-HHHHHHHhCCC---CcEEEEchhHheeeHHHhc
Confidence 01112344567788888862 5899999999999 99999998876 8999999999999998875
Q ss_pred C--CCcceEEcCCCCChhhHHHHHHHHhcCCcc-EEeCCCCCCCccccc
Q 015826 333 D--GDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKL 378 (399)
Q Consensus 333 ~--~~~~~~~~Pplr~~~~~~~l~~~l~~G~id-~i~sdh~p~~~~~k~ 378 (399)
. +|+++||+||||+++||++||++|++|.|| +|+|||+||+.++|+
T Consensus 204 ~~~~g~~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~ 252 (335)
T cd01294 204 GGGLNPHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKE 252 (335)
T ss_pred CCCCCCCeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCCcccc
Confidence 5 588999999999999999999999999999 599999999998885
No 31
>PRK09061 D-glutamate deacylase; Validated
Probab=100.00 E-value=2.8e-39 Score=322.45 Aligned_cols=293 Identities=21% Similarity=0.227 Sum_probs=226.3
Q ss_pred CccEEEEccEEEcCCCc--eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchH
Q 015826 42 YNQYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~--~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~ 119 (399)
+++++|+|++|+++++. ..++|.|+||+|++|++... .+.++||++|++|+|||||+|+|...++
T Consensus 18 ~~~~li~~~~vid~~~~~~~~~~v~I~~G~I~~ig~~~~-----~~~~viD~~g~~v~PG~ID~H~H~~~~~-------- 84 (509)
T PRK09061 18 PYDLVIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAAI-----EGDRTIDATGLVVAPGFIDLHAHGQSVA-------- 84 (509)
T ss_pred cCCEEEECcEEEeCCCCeeccceEEEECCEEEEecCCCC-----CCCeEEeCCCCEEecCeEeeeeCCCCCc--------
Confidence 35789999999998764 35799999999999987431 2567999999999999999999987543
Q ss_pred HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHh-ccCceeEEeeeeee-------CC-----------------
Q 015826 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE-KRIYVDVGFWGGLV-------PE----------------- 174 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~----------------- 174 (399)
..+.++.+||||++++..+..|. ..+.+... ....+|++++.+.. .+
T Consensus 85 -~~~~~~~~GvTtvv~~~~~~~p~-------~~~~~~~~~~~~~vn~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~ 156 (509)
T PRK09061 85 -AYRMQAFDGVTTALELEAGVLPV-------ARWYAEQAGEGRPLNYGASVGWTPARIAVLTGPQAEGTIADFGKALGDP 156 (509)
T ss_pred -cchhhccCCceeEEeeccCCCCH-------HHHHHHHHhcCCcceeehhcCcHHHHHHHhCCccccccccccccccccc
Confidence 25677899999999984233221 12222222 23346777655432 10
Q ss_pred --C-----hhhHHHHHHHH----HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhh
Q 015826 175 --N-----AYNASALEALL----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKL 243 (399)
Q Consensus 175 --~-----~~~~~~l~~l~----~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~ 243 (399)
. .+.++++++++ +.|+.+++.+..+ .+..+.+++.++++.|+++|.++.+|+++.+..
T Consensus 157 ~~~~~~~t~~el~~m~~ll~~al~~Ga~gis~~~~y-----~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~------ 225 (509)
T PRK09061 157 RWQERAATPAELAEILELLEQGLDEGALGIGIGAGY-----APGTGHKEYLELARLAARAGVPTYTHVRYLSNV------ 225 (509)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHCCCCEEecCCcc-----CCCCCHHHHHHHHHHHHHcCCEEEEEecCcccC------
Confidence 1 23344555554 5899999875433 234688999999999999999999999876531
Q ss_pred ccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC------hhHHHHHHHHHHHCCCCEEE
Q 015826 244 EDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD------ASSSLDLLMEAKTNGDSITV 317 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~------~~~~l~~i~~ak~~G~~vt~ 317 (399)
.+..|..++.+++++++++ |+|+||+|+++ . +.+++|+++|++|++|++
T Consensus 226 -----------------~~~~e~~av~~~i~lA~~~-------G~rv~IsHlss~g~~~~~-~~le~I~~Ar~~Gi~Vt~ 280 (509)
T PRK09061 226 -----------------DPRSSVDAYQELIAAAAET-------GAHMHICHVNSTSLRDID-RCLALVEKAQAQGLDVTT 280 (509)
T ss_pred -----------------CchhHHHHHHHHHHHHHHh-------CCCEEEEeeccCCcccHH-HHHHHHHHHHHcCCcEEE
Confidence 1235667899999999976 89999999998 6 889999999999999999
Q ss_pred Eccccc--------cccccccCCCCCcce---EE---cCCCCC-------------------------hhhHHHHHHHHh
Q 015826 318 ETCPHY--------LAFSAEEIPDGDTRF---KC---APPIRD-------------------------AANKEKLWEALM 358 (399)
Q Consensus 318 e~~p~~--------L~~~~~~~~~~~~~~---~~---~Pplr~-------------------------~~~~~~l~~~l~ 358 (399)
|+|||| ++++.+.....+..+ ++ +||||+ +.+++.||++++
T Consensus 281 e~~P~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 360 (509)
T PRK09061 281 EAYPYGAGSTVVGAAFFDPGWLERMGLGYGSLQWVETGERLLTREELAKLRANDPGGLVLIHFLDEDNPRDRALLDRSVL 360 (509)
T ss_pred EecCcchhhhhhcccccCHHHHHHhCCCHHHheehhcccccCCHHHHHHHhccCCCCeEEEEeccCCCCccchhHHHHhC
Confidence 999999 888655444445455 78 999999 677999999999
Q ss_pred cCCccEEeCCCCCCCcccccCCcCCcccccCCcchhc
Q 015826 359 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 395 (399)
Q Consensus 359 ~G~id~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e 395 (399)
++.+ +|+|||+||..++|. .+|.++++|+.|++
T Consensus 361 ~p~~-~i~sD~~p~~~~~~~---~~~~~~~~~~~~~~ 393 (509)
T PRK09061 361 FPGA-AIASDAMPWTWSDGT---VYEGDAWPLPEDAV 393 (509)
T ss_pred CCCc-eEecCCccccccccc---cccccccccccCCC
Confidence 9999 999999999988885 47889999998876
No 32
>PLN02599 dihydroorotase
Probab=100.00 E-value=2.6e-39 Score=307.01 Aligned_cols=256 Identities=19% Similarity=0.203 Sum_probs=202.3
Q ss_pred EEecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc--CceeEEeeeeee
Q 015826 95 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLV 172 (399)
Q Consensus 95 ~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 172 (399)
+.+|---|+|+|+++. .+.....-..++|||++++|| |+.|+..+.+.+..+.+.+... ..+||.+++++.
T Consensus 23 ~~~~~~~d~h~hlr~~------~~~~~~~~~~~gg~t~~i~MP-n~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~l~ 95 (364)
T PLN02599 23 LTITRPDDWHLHLRDG------AKLAAVVPHSARHFGRAIVMP-NLKPPVTTTARALAYRERIMKALPPGSSFEPLMTLY 95 (364)
T ss_pred EEecCCcceeeEccCc------HHHHhhhHHhcCCcCEEEECC-CCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEEEe
Confidence 6689999999999974 234455667799999999999 8888888999998888887765 457999887763
Q ss_pred CCChhhHHHHHHHHHcCCc-EEEEeecCCCCC-CCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCc
Q 015826 173 PENAYNASALEALLNAGVL-GLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 250 (399)
Q Consensus 173 ~~~~~~~~~l~~l~~~G~~-~ik~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 250 (399)
.......++++++.+.|+. +||+|+...+.+ +....+.+.+..+++.++++|+++.+|+|+.+.... .
T Consensus 96 lt~~~~l~Ei~~~~~~Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~----------~ 165 (364)
T PLN02599 96 LTDNTTPEEIKAAKASGVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTDPSVD----------I 165 (364)
T ss_pred cCCCCCHHHHHHHHHCCCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCccccc----------c
Confidence 2222356889998889999 999997543211 122334689999999999999999999998653110 0
Q ss_pred hhhhcCCCCCChHHHHHHHHHHH--HHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEcccccccccc
Q 015826 251 RSYSTYLKTRPPSWEEAAIRELL--TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 328 (399)
Q Consensus 251 ~~~~~~~~~~p~~~E~~~v~~~~--~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~ 328 (399)
. ..|...+.+++ .+++. +++++|++|+|++ +++++++++|++ +|++|+|||||+|++
T Consensus 166 ~-----------~~E~~~i~r~l~~~la~~-------~g~kI~i~HiSt~-~~ve~v~~ak~~--~vtae~tpHhL~l~~ 224 (364)
T PLN02599 166 F-----------DREKVFIDTILAPLVQKL-------PQLKIVMEHITTM-DAVEFVESCGDG--NVAATVTPQHLLLNR 224 (364)
T ss_pred c-----------ccHHHHHHHHHHHHHHhc-------cCCeEEEEecChH-HHHHHHHhccCC--CEEEEecHHHHhcCH
Confidence 0 01333456666 46654 5999999999999 999999999854 999999999999999
Q ss_pred ccCC--CCCcceEEcCCCCChhhHHHHHHHHhcCCc-cEEeCCCCCCCcccccCCcCCcccccCCcchhcc
Q 015826 329 EEIP--DGDTRFKCAPPIRDAANKEKLWEALMDGHI-DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQV 396 (399)
Q Consensus 329 ~~~~--~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i-d~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~ 396 (399)
+++. ..++.+||+||||+++||++||+++.+|.+ |+|+|||+||+.++|+ +++|++|+++
T Consensus 225 ~~~~~~~~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~~~~K~--------~~~g~~Gi~~ 287 (364)
T PLN02599 225 NALFQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKE--------ASCGCAGIYS 287 (364)
T ss_pred HHHhccCCCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCChHHhc--------CCCCCCCccc
Confidence 8865 346789999999999999999999999996 8999999999988874 3567777776
No 33
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=100.00 E-value=3.3e-39 Score=305.99 Aligned_cols=261 Identities=18% Similarity=0.221 Sum_probs=201.9
Q ss_pred EEecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC--ceeEEeeeeee
Q 015826 95 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLV 172 (399)
Q Consensus 95 ~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 172 (399)
+.+|---|+|+|+++.+ +.....-....|||++++|+ ++.|...+.+.++.+.+.+.... .++|.+++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~vt~vv~mP-nt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v~ 74 (341)
T TIGR00856 2 LTIRRPDDWHLHLRDGA------MLKAVLPYTSEIFSRAIVMP-NLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTLY 74 (341)
T ss_pred ceecCccceeeeccCch------HHHHHHHHHHhhcCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEEE
Confidence 35677789999999753 34455556677899999999 66777777788888777766555 36899888885
Q ss_pred CCChhhHHHHHHHHHc-CCcEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCc
Q 015826 173 PENAYNASALEALLNA-GVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 250 (399)
Q Consensus 173 ~~~~~~~~~l~~l~~~-G~~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 250 (399)
+......++++++.+. |+.+||+|+...+. .+....+++.+.++++.++++|+++.+|+|+....
T Consensus 75 ~~~~~~~~Ei~~l~~~~Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~~------------- 141 (341)
T TIGR00856 75 LTDSLTPEELERAKNEGVVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHGD------------- 141 (341)
T ss_pred CCCCCCHHHHHHHHHcCCeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCCC-------------
Confidence 5444356889998877 99999998653211 11223466899999999999999999999986310
Q ss_pred hhhhcCCCCCChHHHHHHHH-HHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccc
Q 015826 251 RSYSTYLKTRPPSWEEAAIR-ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 329 (399)
Q Consensus 251 ~~~~~~~~~~p~~~E~~~v~-~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~ 329 (399)
.... ..|..++. .+..+|++ .+++++|++|+|++ +++++|+++|. +||+|||||||+|+++
T Consensus 142 i~~~--------~~e~~a~~~~i~~lA~~------~~~~~~~i~H~st~-~~~~~i~~a~~---~vt~E~~ph~L~l~~~ 203 (341)
T TIGR00856 142 IDIF--------DREARFIESVLEPLRQR------FPALKVVLEHITTK-DAIDYVEDGNN---RLAATITPQHLMFTRN 203 (341)
T ss_pred cccc--------cchhhhhHHHHHHHHHH------ccCCeEEEEecCcH-HHHHHHHHcCC---CEEEEEcHHHHhccHH
Confidence 0000 01333444 33455554 35899999999999 99999998865 3999999999999999
Q ss_pred cCCC--CCcceEEcCCCCChhhHHHHHHHHhcCCcc-EEeCCCCCCCcccccCCcCCcccccCCcchhcccc
Q 015826 330 EIPD--GDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVGY 398 (399)
Q Consensus 330 ~~~~--~~~~~~~~Pplr~~~~~~~l~~~l~~G~id-~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l 398 (399)
++.. +|+.+||+||||+++||++||++|++|+|| +|+|||+||+.++|.. +.+++|++|+|+++
T Consensus 204 ~~~~~~~~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~~~~K~~-----~~~~~G~~g~e~~l 270 (341)
T TIGR00856 204 DLLGGGVNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHARHRKES-----SCGCAGCFSAPTAL 270 (341)
T ss_pred HHhccCCCCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChhHcCC-----CCCCCCcccHHHHH
Confidence 8765 578999999999999999999999999999 6999999999888853 24899999999864
No 34
>PRK05451 dihydroorotase; Provisional
Probab=100.00 E-value=4.8e-38 Score=299.56 Aligned_cols=263 Identities=19% Similarity=0.216 Sum_probs=194.1
Q ss_pred EEecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc--CceeEEeeeeee
Q 015826 95 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLV 172 (399)
Q Consensus 95 ~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 172 (399)
+-+|--||+|+|+++. ... .++.++++ .++|++++|+ ++.|...+.+.++.+...+.+. ..+++.+++++.
T Consensus 5 ~~~~~~~d~h~hl~~~-~~~-~~~~~~~~----~~~t~~v~mP-nt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i~ 77 (345)
T PRK05451 5 LTIRRPDDWHLHLRDG-AML-KAVVPYTA----RQFGRAIVMP-NLVPPVTTVAQALAYRERILAALPAGSNFEPLMTLY 77 (345)
T ss_pred EEecCcceEEEecCCc-hHH-HHHHHHHH----HhcCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEEE
Confidence 4567889999999964 322 24555544 4699999999 7777777788888877766654 335777777665
Q ss_pred CCChhhHHHHHHHHHcCCc-EEEEeecCCCCC-CCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCc
Q 015826 173 PENAYNASALEALLNAGVL-GLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 250 (399)
Q Consensus 173 ~~~~~~~~~l~~l~~~G~~-~ik~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 250 (399)
.......++++++.+.|+. +||+|+...+.. +....+++.+.++++.++++|+++.+|+++.+.... .
T Consensus 78 ~~~~~~~~El~~~~~~Gvv~g~Kl~~~~~~~~~~~~~~dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~----------~ 147 (345)
T PRK05451 78 LTDNTDPDELERAKASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKLGMPLLVHGEVTDPDID----------I 147 (345)
T ss_pred eCCCCCHHHHHHHHHCCCEEEEEEecccCccCCccCcCCHHHHHHHHHHHHHcCCEEEEecCCCCcccc----------c
Confidence 4433456889999889954 999997542110 111237889999999999999999999998543100 0
Q ss_pred hhhhcCCCCCChHHHHHHHHHH-HHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccc
Q 015826 251 RSYSTYLKTRPPSWEEAAIREL-LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 329 (399)
Q Consensus 251 ~~~~~~~~~~p~~~E~~~v~~~-~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~ 329 (399)
. . .|...+.+. ..+|++ .+|+++||+|+|++ +++++|+++ |.+||+|||||||+|+++
T Consensus 148 ~-------~----~e~~~~~~~l~~lA~~------~pg~~lhI~Hlst~-~~~e~i~~a---~~~it~Et~ph~L~l~~~ 206 (345)
T PRK05451 148 F-------D----REAVFIDRVLEPLRRR------FPKLKIVFEHITTK-DAVDYVREA---NDNLAATITPHHLLINRN 206 (345)
T ss_pred c-------c----chHHHHHHHHHHHHHh------cCCCcEEEEecCcH-HHHHHHHhc---CCCEEEEecHHHHhcCHH
Confidence 0 0 123344444 447765 35899999999999 999999877 569999999999999998
Q ss_pred cCC--CCCcceEEcCCCCChhhHHHHHHHHhcCCcc-EEeCCCCCCCcccccC--CcCCcccccCCcchhc
Q 015826 330 EIP--DGDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLL--DEGNFLKAWGGISSLQ 395 (399)
Q Consensus 330 ~~~--~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id-~i~sdh~p~~~~~k~~--~~~~~~~~~~G~~g~e 395 (399)
++. ..++.+||+||||+++||++||++|++|.|| +|+|||+||+.++|+. |...++.+++|++++.
T Consensus 207 ~~~~~~~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~~~~G~~gi~~~~~g~~~~~ 277 (345)
T PRK05451 207 DMLVGGIRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKESACGCAGIFSAPAALELYA 277 (345)
T ss_pred HHhCCCcCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhCCCCCCCchhhHHHHHHHHH
Confidence 765 3467899999999999999999999999999 8999999999988853 1223555555555443
No 35
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=100.00 E-value=1.5e-36 Score=297.62 Aligned_cols=259 Identities=25% Similarity=0.301 Sum_probs=198.4
Q ss_pred cEEEEccEEEcCCC--ceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHH
Q 015826 44 QYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (399)
Q Consensus 44 ~~li~n~~vv~~~~--~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~ 121 (399)
+++|+|++|+++.+ ...++|.|+||+|++|++.... .+.++||++|++|+|||||+|+|+..+... ...
T Consensus 1 d~~i~n~~v~~~~~~~~~~~~i~I~~g~I~~i~~~~~~----~~~~~iD~~G~~v~PG~iD~H~H~~~~~~~-----~~~ 71 (415)
T cd01297 1 DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILST----SAREVIDAAGLVVAPGFIDVHTHYDGQVFW-----DPD 71 (415)
T ss_pred CEEEECCEEECCCCCccccceEEEECCEEEEEecCCCC----CCCeEEECCCCEEccCEeeeeecCCccccc-----Ccc
Confidence 47899999999876 3578999999999999865321 246799999999999999999999876432 234
Q ss_pred HHHHHcCCeeeeecCcCCCCCCCCcH------------------------HHHHHHHHHHhcc-CceeEE---eeeeeeC
Q 015826 122 TKAAAAGGITTLIDMPLNSDPSTIST------------------------ETLKLKVDAAEKR-IYVDVG---FWGGLVP 173 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~~~~~~~~~~~------------------------~~~~~~~~~~~~~-~~~~~~---~~~~~~~ 173 (399)
++.++.+||||++++++++.|..... +.+..+++.+... ..+|+. +++.+..
T Consensus 72 ~~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~ 151 (415)
T cd01297 72 LRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLDALEARPPAVNVAALVGHAALRR 151 (415)
T ss_pred hhhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCCCCCHHHHHHHHHhcCCCcCeeeccCcHHHHH
Confidence 77889999999999986444443332 4455666666444 468887 5554431
Q ss_pred ---------CChhhHHHHHHH----HHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhH
Q 015826 174 ---------ENAYNASALEAL----LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 240 (399)
Q Consensus 174 ---------~~~~~~~~l~~l----~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~ 240 (399)
.+.+.+++++++ ++.|+.+||.++.+.. ....+++++.++++.|+++|.++.+|+++.+.
T Consensus 152 ~~~g~~~~~~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~---~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~---- 224 (415)
T cd01297 152 AVMGLDAREATEEELAKMRELLREALEAGALGISTGLAYAP---RLYAGTAELVALARVAARYGGVYQTHVRYEGD---- 224 (415)
T ss_pred HHhCcCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcccccCC---cccCCHHHHHHHHHHHHHcCCEEEEEECcccc----
Confidence 122345666666 4689999998764421 01468999999999999999999999987542
Q ss_pred HhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHH---------HHHHHHHHHC
Q 015826 241 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS---------LDLLMEAKTN 311 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~---------l~~i~~ak~~ 311 (399)
.|..++.+++++++++ |+|+||+|+|+. +. +++|+++|++
T Consensus 225 -----------------------~e~~av~~~~~~a~~~-------g~r~~i~H~ss~-~~~~~~~~~~~l~~i~~a~~~ 273 (415)
T cd01297 225 -----------------------SILEALDELLRLGRET-------GRPVHISHLKSA-GAPNWGKIDRLLALIEAARAE 273 (415)
T ss_pred -----------------------cHHHHHHHHHHHHHHh-------CCCEEEEEEecC-CCcccchHHHHHHHHHHHHHh
Confidence 3566899999999975 899999999987 77 9999999999
Q ss_pred CCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCCC
Q 015826 312 GDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV 373 (399)
Q Consensus 312 G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~~ 373 (399)
|++|++++||||+.+ +..|+++.++.+++++|||+|+.
T Consensus 274 G~~v~~e~~p~~~~~------------------------~~~~~~l~~~~~~~i~SDh~~~~ 311 (415)
T cd01297 274 GLQVTADVYPYGAGS------------------------EDDVRRIMAHPVVMGGSDGGALG 311 (415)
T ss_pred CCcEEEEeCCCCCCc------------------------HHHHHHHHcCCCceeeeCCCcCC
Confidence 999999999987754 23344444458999999999974
No 36
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=100.00 E-value=4.8e-32 Score=261.09 Aligned_cols=284 Identities=24% Similarity=0.311 Sum_probs=211.8
Q ss_pred EEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCC------CCCCCc---C
Q 015826 46 WLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD------PGRTEW---E 116 (399)
Q Consensus 46 li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~------~~~~~~---e 116 (399)
+|+|++|+++++..+++|.|+||||++|++... ...++||++|++|+|||||+|+|..+ ++. .| +
T Consensus 1 ~i~~~~vv~~~~~~~~~i~i~dg~I~~i~~~~~-----~~~~~iD~~G~~v~PGlID~H~h~~e~~~~prp~~-~~~~~~ 74 (376)
T TIGR02318 1 VLSNARLVLEDEVVEGSVVIEDGAIADIGEGPV-----ALAEAIDGEGDLLLPGLIDLHTDNLERHMSPRPGV-DWPIDA 74 (376)
T ss_pred CEeCeEEECCCceEeeeEEEECCEEEEecCCCC-----CCCceEeCCCCEEeccEEEcccCccccCcCCCCCC-CcchHH
Confidence 489999999888777899999999999987432 24568999999999999999999987 554 45 6
Q ss_pred chHHHHHHHHcCCeeeeecCcCCC--CCCCCcHHHHHHHH---HHHhcc--CceeEEeeeeeeCCChhhHHHHHHHHHcC
Q 015826 117 GFPSGTKAAAAGGITTLIDMPLNS--DPSTISTETLKLKV---DAAEKR--IYVDVGFWGGLVPENAYNASALEALLNAG 189 (399)
Q Consensus 117 ~~~~~~~~al~~GvTtv~d~~~~~--~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 189 (399)
++....++++.+||||+++|+.+. .|...+.+.++.++ +.++.+ ..+|+.+|+++.-..++..++++++.+.|
T Consensus 75 ~~~~~~~~~aa~GiTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~h~~~e~~~~~~~~~l~~~~~~g 154 (376)
T TIGR02318 75 AIVEHDKQLAAAGITTVFDALALGDTESGGRRPDNLRRMIDAISEARDRGLLRADHRLHLRCELPNEEVLPELEELIDDP 154 (376)
T ss_pred HHHHHHHHHhhCCcceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcCchhhhceeEEEEEecCccHHHHHHHHhcCC
Confidence 788899999999999999998443 45556677777776 555544 78999999988544555688999999999
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHH
Q 015826 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 269 (399)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v 269 (399)
+.+||.||...+ ..++..+.+.+.+.+.. ++| .+|+|+.+.+.....+.+ . + ..+++
T Consensus 155 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~g---~~~~e~~~~~~~~~~~~~------~---~--------~~e~i 211 (376)
T TIGR02318 155 RVDLISLMDHTP-GQRQFRDLEKYREYYRG--KRG---LSDDEFDEIVEERIARRA------E---Y--------GLANR 211 (376)
T ss_pred CcCEEEEeCCCC-CcccccCHHHHHHHHHh--hcC---CCHHHHHHHHHHHHHHHh------h---c--------cHHHH
Confidence 999999998765 34456787777776654 667 779998776553332211 0 0 14578
Q ss_pred HHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEcccccccccc-ccCCCCCcc-eEEcC-CCCC
Q 015826 270 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA-EEIPDGDTR-FKCAP-PIRD 346 (399)
Q Consensus 270 ~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~-~~~~~~~~~-~~~~P-plr~ 346 (399)
++++++|+++ |+++ .+|... +.+.++++++.|+.+.- |.+...+ +.+...|.. .++.| |+|.
T Consensus 212 ~~~v~~A~~~-------G~~v-~sH~~~---~~e~i~~a~~~Gv~~~E----~~~t~e~a~~~~~~G~~v~~~~p~~~r~ 276 (376)
T TIGR02318 212 SEIAALARAR-------GIPL-ASHDDD---TPEHVAEAHDLGVTISE----FPTTLEAAKEARSLGMQILMGAPNIVRG 276 (376)
T ss_pred HHHHHHHHHC-------CCeE-EEecCC---CHHHHHHHHHCCCChhc----cCCCHHHHHHHHHcCCeEEECCcccccc
Confidence 8999999975 8887 888743 35678899999984321 1111111 122233544 56667 7887
Q ss_pred hhh--HHHHHHHHhcCCccEEeCCCCCCC
Q 015826 347 AAN--KEKLWEALMDGHIDMLSSDHSPTV 373 (399)
Q Consensus 347 ~~~--~~~l~~~l~~G~id~i~sdh~p~~ 373 (399)
..+ +..+|+++++|.+++++|||.|+.
T Consensus 277 ~~~~~~~~l~~~~~~G~~~~l~SD~~p~~ 305 (376)
T TIGR02318 277 GSHSGNLSARELAHEGLLDVLASDYVPAS 305 (376)
T ss_pred ccccchHHHHHHHHCCCcEEEEcCCCcHH
Confidence 766 889999999999999999999875
No 37
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=100.00 E-value=5e-32 Score=261.81 Aligned_cols=288 Identities=22% Similarity=0.289 Sum_probs=204.2
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccC----CCC-C---C
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD----DPG-R---T 113 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~----~~~-~---~ 113 (399)
|++++|+|++|+++++..+++|+|+||||++|++... .+.++||++|++|||||||+|+|.. .+. . .
T Consensus 1 ~~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~-----~~~~~iDa~g~~v~PG~ID~H~h~~~~~~~p~~~~~~~ 75 (383)
T PRK15446 1 MMEMILSNARLVLPDEVVDGSLLIEDGRIAAIDPGAS-----ALPGAIDAEGDYLLPGLVDLHTDNLEKHLAPRPGVDWP 75 (383)
T ss_pred CccEEEECcEEEcCCCceeeeEEEECCEEEEecCCCC-----CCCceEeCCCCEEEeCeEEcccCCcccccCCCCCCccc
Confidence 4689999999999887778999999999999997432 1347899999999999999999654 232 1 2
Q ss_pred CcCchHHHHHHHHcCCeeeeecCcCCC-CCC-CC----cHHHHHHHHH--HHhccCceeEEeeeeeeCCChhhHHHHHHH
Q 015826 114 EWEGFPSGTKAAAAGGITTLIDMPLNS-DPS-TI----STETLKLKVD--AAEKRIYVDVGFWGGLVPENAYNASALEAL 185 (399)
Q Consensus 114 ~~e~~~~~~~~al~~GvTtv~d~~~~~-~~~-~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 185 (399)
.++++..++++++++||||++||+... .|. .. ....+..+++ ....+..+||++|+.+...+++.+++++++
T Consensus 76 ~~~~~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~h~~~~~~~~~~~~~l~~~ 155 (383)
T PRK15446 76 ADAALAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGLLRADHRLHLRCELTNPDALELFEAL 155 (383)
T ss_pred hHHHHHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCchhccceeEEEEEecCcchHHHHHHH
Confidence 227888999999999999999985333 231 11 1224445555 344677899999999876566678899999
Q ss_pred HHcCCcEEEEeecCC-CCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHH
Q 015826 186 LNAGVLGLKSFMCPS-GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 264 (399)
Q Consensus 186 ~~~G~~~ik~~~~~~-~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 264 (399)
++.|+.+||.||+.. +...++ ..+.+++.. ++++| .+|+|+.+...+.. .+|+..
T Consensus 156 ~~~g~~~~k~fm~~~p~~~~~~--~~~~~~~~~--~~~~g---~~~~e~~~~~~~~~-----------------~~~~~~ 211 (383)
T PRK15446 156 LAHPRVDLVSLMDHTPGQRQFR--DLEKYREYY--AGKYG---LSDEEFDAFVEERI-----------------ALSARY 211 (383)
T ss_pred hcCCCcCEEEEeCCCCcccccc--CHHHHHHHH--HhhcC---CCHHHHHHHHHHHH-----------------HhHhhc
Confidence 999999999999875 322232 333444444 45778 77999887644222 125555
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEcccccccccc-ccCCCCCcce-EEcC
Q 015826 265 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA-EEIPDGDTRF-KCAP 342 (399)
Q Consensus 265 E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~-~~~~~~~~~~-~~~P 342 (399)
+.+.+++++++|+++ |+++ .+|... ..+.++++++.|+.++. .| ....+ +.....|... ++.|
T Consensus 212 ~~e~i~~~v~~A~~~-------g~~v-~sH~~~---~~~~i~~a~~~Gv~~~e--~~--~~~e~~~~~~~~g~~v~~~~p 276 (383)
T PRK15446 212 APPNRRAIAALARAR-------GIPL-ASHDDD---TPEHVAEAHALGVAIAE--FP--TTLEAARAARALGMSVLMGAP 276 (383)
T ss_pred CHHHHHHHHHHHHHC-------CCce-eecCCC---CHHHHHHHHHcCCceee--CC--CcHHHHHHHHHCCCEEEeCCc
Confidence 677899999999976 8887 778732 23568889999998863 11 11111 1112223333 3334
Q ss_pred -CCCC--hhhHHHHHHHHhcCCccEEeCCCCCCC
Q 015826 343 -PIRD--AANKEKLWEALMDGHIDMLSSDHSPTV 373 (399)
Q Consensus 343 -plr~--~~~~~~l~~~l~~G~id~i~sdh~p~~ 373 (399)
|+|. ...+..+|++++.|.+++++|||.|++
T Consensus 277 ~~~r~~~~~~~~~~~~~~~~Gv~~~lgSD~~p~~ 310 (383)
T PRK15446 277 NVVRGGSHSGNVSALDLAAAGLLDILSSDYYPAS 310 (383)
T ss_pred ccccCCcccchHhHHHHHHCCCcEEEEcCCChhh
Confidence 4776 567899999999999999999998875
No 38
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=99.92 E-value=3.3e-23 Score=201.00 Aligned_cols=256 Identities=20% Similarity=0.240 Sum_probs=164.6
Q ss_pred CccEEEEccEEEcCCC--ceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchH
Q 015826 42 YNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~--~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~ 119 (399)
+++++|+|++|+++.. ..+++|+|+||+|++|++.... .+.++||++|++|+|||||+|+|+..++.. +..
T Consensus 2 ~~~~li~~~~i~~~~~~~~~~~~i~i~~g~I~~i~~~~~~----~~~~viD~~g~~v~PGliD~H~H~~~~g~~---~~~ 74 (379)
T PRK12394 2 KNDILITNGHIIDPARNINEINNLRIINDIIVDADKYPVA----SETRIIHADGCIVTPGLIDYHAHVFYDGTE---GGV 74 (379)
T ss_pred CccEEEECcEEECCCCCcccccEEEEECCEEEEEcCCCCC----CCCeEEECCCCEEECCEEEeeecCCCCCcc---ccc
Confidence 4578999999998764 3467999999999999874321 245799999999999999999999765432 223
Q ss_pred HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHh---ccCceeEEeeeeeeCC-----Chh--hHHHHHHHHH--
Q 015826 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE---KRIYVDVGFWGGLVPE-----NAY--NASALEALLN-- 187 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~--~~~~l~~l~~-- 187 (399)
+....++++||||++|++ .. ...+.+.+........ .+.++++++++..... ... ..++.+++++
T Consensus 75 ~~~~~~l~~G~Ttv~d~g-~~--~~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (379)
T PRK12394 75 RPDMYMPPNGVTTVVDAG-SA--GTANFDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQENYDPDNIDENKIHALFRQY 151 (379)
T ss_pred CHHHHHHhCCccEEEECC-CC--CcccHHHHHHHHhhhhcceeeeEEeeecccccccCcccccChhHCCHHHHHHHHHHC
Confidence 345668999999999997 22 2233444444433222 2344455544322110 101 1356666653
Q ss_pred -cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHH
Q 015826 188 -AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 266 (399)
Q Consensus 188 -~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~ 266 (399)
.++.++|++++... . ...+++.++++++.|+++|+++++|+++....
T Consensus 152 ~~~~~g~ki~~~~~~--~-~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~----------------------------- 199 (379)
T PRK12394 152 RNVLQGLKLRVQTED--I-AEYGLKPLTETLRIANDLRCPVAVHSTHPVLP----------------------------- 199 (379)
T ss_pred cCcEEEEEEEEeccc--c-cccchHHHHHHHHHHHHcCCCEEEEeCCCCcc-----------------------------
Confidence 46778887754421 1 14578999999999999999999999764320
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEEEEc-------CCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceE
Q 015826 267 AAIRELLTVAKDTRTDGPAEGAHLHIVH-------LSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFK 339 (399)
Q Consensus 267 ~~v~~~~~~a~~~~~~~~~~g~~vhi~H-------~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~ 339 (399)
..+++.+... .....|+.| .++. +..+.+++++++|+.+.+. ++
T Consensus 200 --~~~~~~~l~~-------g~~~~H~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~-~g------------------ 250 (379)
T PRK12394 200 --MKELVSLLRR-------GDIIAHAFHGKGSTILTEEG-AVLAEVRQARERGVIFDAA-NG------------------ 250 (379)
T ss_pred --HHHHHHhcCC-------CCEEEecCCCCCCCcCCCCC-CChHHHHHHHhCCeEEEec-CC------------------
Confidence 1112222221 023345544 3333 4467788888888522111 11
Q ss_pred EcCCCCChhhHHHHHHHHhcCC-ccEEeCCCCCCC
Q 015826 340 CAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTV 373 (399)
Q Consensus 340 ~~Pplr~~~~~~~l~~~l~~G~-id~i~sdh~p~~ 373 (399)
++..+.+.+|+++.+|. .++|+||++|.+
T Consensus 251 -----~s~~~~~~~~~~l~~G~~~~~lgTD~~~~~ 280 (379)
T PRK12394 251 -----RSHFDMNVARRAIANGFLPDIISSDLSTIT 280 (379)
T ss_pred -----ccccchHHHHHHHHCCCCceEEECCCCCCC
Confidence 23335678899999996 799999999875
No 39
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=99.92 E-value=3e-23 Score=202.39 Aligned_cols=287 Identities=21% Similarity=0.253 Sum_probs=166.4
Q ss_pred ccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCC---CcCchH
Q 015826 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---EWEGFP 119 (399)
Q Consensus 43 ~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~---~~e~~~ 119 (399)
|.++|+|++|++++...+++|.|+||+|++|++..+.....++.++||++|++|+|||||+|+|+...+.. ...+..
T Consensus 1 ~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~v~~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~t~~ 80 (388)
T PRK10657 1 MFTLLKNAHVYAPEDLGKKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQHVHIIGGGGEGGFSTRTPE 80 (388)
T ss_pred CeEEEEccEEECCCCCcceEEEEECCEEEEecCCccccccCCCCeEEECCCCEEcccceeeeeCcccCCCCcccccCCHH
Confidence 35789999999987666789999999999998654221111246899999999999999999998742211 112445
Q ss_pred HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecC
Q 015826 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCP 199 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~ 199 (399)
..+++++++||||++|++ +..+.....+.+....+... +.|+..+.. ...
T Consensus 81 ~~~~~~~~~GvTTvvd~~-~~~~~~~~~~~~~~~~~~~~----------------------------~~Gv~~~~~-~~~ 130 (388)
T PRK10657 81 VQLSDLTEAGITTVVGLL-GTDGITRSMESLLAKARALE----------------------------EEGISAYMY-TGS 130 (388)
T ss_pred HHHHHHHhCCceEEECCC-CCCCCCCCHHHHHHHHHHHH----------------------------hhCCEEEEE-ecC
Confidence 677889999999999998 43322222322222222221 223333211 000
Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHh-cCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHh
Q 015826 200 SGINDFPMT-NASHIKEGLSVLAR-YKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 277 (399)
Q Consensus 200 ~~~~~~~~~-~~~~l~~~~~~a~~-~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~ 277 (399)
.. .+.. ..+.+.+-+...++ .|. +......+...++...+...+.++...++
T Consensus 131 ~~---~~~~~~~~~~~~~~~~~~~~~g~-----------------------g~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 184 (388)
T PRK10657 131 YH---VPVRTITGSIRKDIVLIDKVIGV-----------------------GEIAISDHRSSQPTVEELARLAAEARVGG 184 (388)
T ss_pred CC---CCchhhhcchhhceehhhhhhCc-----------------------ceeeeccCCCCCCCHHHHHHHHHHHHHHH
Confidence 00 0000 00000000000000 000 00111122234455555556666665555
Q ss_pred hhccCCCCCCc-eEEEEcCC-ChhHHHHHHHHH-HHCCCCEEEEcccccccccccc------CCCCCcce--E-EcCCCC
Q 015826 278 DTRTDGPAEGA-HLHIVHLS-DASSSLDLLMEA-KTNGDSITVETCPHYLAFSAEE------IPDGDTRF--K-CAPPIR 345 (399)
Q Consensus 278 ~~~~~~~~~g~-~vhi~H~s-~~~~~l~~i~~a-k~~G~~vt~e~~p~~L~~~~~~------~~~~~~~~--~-~~Pplr 345 (399)
.+ .|. +.++.|++ +. ..++.++++ ++.|+.+++ +|++|+.++.+. +...|.+. . ++||++
T Consensus 185 ~~------~g~~~~i~vH~~~~~-~~l~~v~~~l~~~Gv~~~~-~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~~~~~~~ 256 (388)
T PRK10657 185 LL------SGKAGIVHVHMGDGK-KGLQPLFELLENTDIPISQ-FLPTHVNRNEPLFEQALEFAKKGGVIDLTTSDPDFL 256 (388)
T ss_pred Hh------cCCCCEEEEEeCCch-HHHHHHHHHHHhcCCCcce-eeCcccCCCHHHHHHHHHHHHcCCeEEEecCCCccc
Confidence 43 232 26888988 45 788888555 688999986 999999885442 11223222 3 788888
Q ss_pred Chh---hHHHHHHHHhcCC-cc--EEeCCCCCCCcccccCCcCCcccccCCcchhccc
Q 015826 346 DAA---NKEKLWEALMDGH-ID--MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQVG 397 (399)
Q Consensus 346 ~~~---~~~~l~~~l~~G~-id--~i~sdh~p~~~~~k~~~~~~~~~~~~G~~g~e~~ 397 (399)
.+. ..+.+|+++++|. +| +++|||+.....-.. ++.+ ++.|..+++++
T Consensus 257 ~~~~~~~~~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~--~g~~--~~~g~~~~~~l 310 (388)
T PRK10657 257 GEGEVAPAEALKRALEAGVPLSRVTLSSDGNGSLPKFDE--DGNL--VGLGVGSVESL 310 (388)
T ss_pred ccCccCHHHHHHHHHHcCCChhheEEECCCCCCCceecc--CCCE--eccCcCchhhH
Confidence 774 4588999999998 88 999999654321100 1122 56677776654
No 40
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=99.91 E-value=3.6e-23 Score=203.26 Aligned_cols=213 Identities=23% Similarity=0.261 Sum_probs=152.1
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCC--C-------CCCCCcEEeCCCCEEecceeecccccCCCCC
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWP--R-------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~--~-------~~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 112 (399)
..+++|+|++|+|+.+...++|.|+||||++|++..... . ...+.++||++|++|+|||||+|+|+..++
T Consensus 70 ~~DlVI~Na~IiD~~gi~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~~~Pg- 148 (573)
T PRK13206 70 APDTVITGAVILDHWGIVKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHFICPQ- 148 (573)
T ss_pred CCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeeccCCch-
Confidence 468999999999988777899999999999999742110 0 002468999999999999999999998764
Q ss_pred CCcCchHHHHHHHHcCCeeeeecCcCC----CCCCCCcHH--HHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHH
Q 015826 113 TEWEGFPSGTKAAAAGGITTLIDMPLN----SDPSTISTE--TLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL 186 (399)
Q Consensus 113 ~~~e~~~~~~~~al~~GvTtv~d~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 186 (399)
..++++++||||+++|+.+ +.+...+.. .+....+... ...+|+++++.. +....+++.+++
T Consensus 149 --------~~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~-~~pvn~g~~g~g---~~~~~~~L~el~ 216 (573)
T PRK13206 149 --------IVDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALD-GWPVNVALLGKG---NTVSAEALWEQL 216 (573)
T ss_pred --------HHHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHHhh-cCceeEEEecCc---CcCCHHHHHHHH
Confidence 2388999999999997421 122222222 3334444433 467888887642 222356899999
Q ss_pred HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHH
Q 015826 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 266 (399)
Q Consensus 187 ~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~ 266 (399)
++|+.+||++..+ ..+++.+.+++++|+++|+++.+|+++-.+.
T Consensus 217 ~aGA~GfKi~~d~-------g~t~~~i~~aL~~A~~~gv~V~iHadtlne~----------------------------- 260 (573)
T PRK13206 217 RGGAGGFKLHEDW-------GSTPAAIDACLRVADAAGVQVALHSDTLNEA----------------------------- 260 (573)
T ss_pred HCCCcEEeecCcc-------CCCHHHHHHHHHHHHHhCCEEEEECCCcccc-----------------------------
Confidence 9999999987432 3688999999999999999999999875431
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEEEEcCCCh--hHHHHHHHHHHHCC
Q 015826 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNG 312 (399)
Q Consensus 267 ~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~--~~~l~~i~~ak~~G 312 (399)
+..+. .++.. .|..+|++|+... ..+-++|+-+...+
T Consensus 261 -g~~E~-t~aa~-------~gr~iH~~H~egaggghapd~~~~~~~~n 299 (573)
T PRK13206 261 -GFVED-TLAAI-------AGRSIHAYHTEGAGGGHAPDIITVASHPN 299 (573)
T ss_pred -chhhH-HHHHh-------cCCeEEEEeccCCCcCcccHHHHhcCCCC
Confidence 12222 23332 3889999999753 14456777775544
No 41
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=99.91 E-value=6.8e-23 Score=200.42 Aligned_cols=174 Identities=25% Similarity=0.299 Sum_probs=132.9
Q ss_pred CccEEEEccEEEcC-CCceeeEEEEECCEEEEeccCCCCC--C-------CCCCCcEEeCCCCEEecceeecccccCCCC
Q 015826 42 YNQYWLTSKRIVTP-KGVISGAVEIKEGNIISIVSEEDWP--R-------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111 (399)
Q Consensus 42 ~~~~li~n~~vv~~-~~~~~~~V~I~dG~I~~Ig~~~~~~--~-------~~~~~~vID~~G~~vlPGlID~H~H~~~~~ 111 (399)
..+++|+|++|+|+ .+...++|.|+||||++|++..... . -.++.++||++|++|+|||||+|+|+..++
T Consensus 67 ~~DlVItNa~IIDp~~Gi~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~~~Pg 146 (569)
T PRK13308 67 ALDFVLCNVTVIDPVLGIVKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHFDSAQ 146 (569)
T ss_pred cCCEEEECeEEEcCCCCeEEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCCCCcc
Confidence 46899999999996 4566899999999999999753210 0 012568999999999999999999998754
Q ss_pred CCCcCchHHHHHHHHcCCeeeeecCcCC-CCC-CCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcC
Q 015826 112 RTEWEGFPSGTKAAAAGGITTLIDMPLN-SDP-STISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAG 189 (399)
Q Consensus 112 ~~~~e~~~~~~~~al~~GvTtv~d~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 189 (399)
+ .++++++||||+++++.. +.+ .......++.+++.... ..+++++++.... ...+++++++++|
T Consensus 147 ~---------~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~-~pvN~g~~gkG~~---s~~aeL~eli~aG 213 (569)
T PRK13308 147 L---------VDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEA-WPVNFGFLGRGNS---SKPAALIEQVEAG 213 (569)
T ss_pred H---------HHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhc-CCccEEEEcCCcc---cCHHHHHHHHHCC
Confidence 2 378999999999996421 112 24456777777776654 4588888754222 3467899999999
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015826 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (399)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 235 (399)
+.+||++..+ ..+++.+.+++++|+++|++|.+|++.-.
T Consensus 214 A~GfKi~ed~-------g~t~~~i~~aL~~A~~~dv~VaiHadtln 252 (569)
T PRK13308 214 ACGLKIHEDW-------GAMPAAIDTCLEVADEYDFQVQLHTDTLN 252 (569)
T ss_pred CCEEeecCCC-------CCCHHHHHHHHHHHHhcCCEEEEeCCCcC
Confidence 9999987432 24778999999999999999999998744
No 42
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=99.91 E-value=9.1e-23 Score=200.91 Aligned_cols=214 Identities=25% Similarity=0.304 Sum_probs=150.3
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCC-------CCCCCcEEeCCCCEEecceeecccccCCCCCCC
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPR-------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE 114 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~-------~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~ 114 (399)
.++++|+|++|+++.+...++|.|+||||++|++...... ...+.++||++|++|+|||||+|+|+..++
T Consensus 66 ~mDlVI~Na~Vvd~~gi~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~P~--- 142 (568)
T PRK13207 66 AVDTVITNALILDHWGIVKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFICPQ--- 142 (568)
T ss_pred cCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCcccc---
Confidence 4689999999999877778999999999999987421110 012568999999999999999999988753
Q ss_pred cCchHHHHHHHHcCCeeeeecCcCC----CCCCCCc--HHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHc
Q 015826 115 WEGFPSGTKAAAAGGITTLIDMPLN----SDPSTIS--TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNA 188 (399)
Q Consensus 115 ~e~~~~~~~~al~~GvTtv~d~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 188 (399)
..++++++||||+++|+.+ +.+...+ ...+...++... ...+++++++.. ..+..++++++++.
T Consensus 143 ------~~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~-~~pin~g~~g~g---~~~~~~~L~e~i~a 212 (568)
T PRK13207 143 ------QIEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAAD-AFPMNIGFLGKG---NASLPEALEEQIEA 212 (568)
T ss_pred ------HHHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhh-cCCceEEEEcCC---CcccHHHHHHHHHc
Confidence 2578999999999998421 1222212 233454444443 344677776532 22356788999999
Q ss_pred CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHH
Q 015826 189 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268 (399)
Q Consensus 189 G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~ 268 (399)
|+.+||++..+ ..+++++.+++++|+++|+++.+|+++.... +
T Consensus 213 GA~gfKi~~d~-------g~t~~~l~~aL~~A~~~gv~V~iHa~tlne~------------------------------G 255 (568)
T PRK13207 213 GAIGLKLHEDW-------GATPAAIDNCLSVADEYDVQVAIHTDTLNES------------------------------G 255 (568)
T ss_pred CCCEEeecCCC-------CCCHHHHHHHHHHHHHhCCEEEEeCCCcccc------------------------------h
Confidence 99999987533 2578999999999999999999999764421 1
Q ss_pred HHHHHHHHhhhccCCCCCCceEEEEcCCCh--hHHHHHHHHHHHCCC
Q 015826 269 IRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGD 313 (399)
Q Consensus 269 v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~--~~~l~~i~~ak~~G~ 313 (399)
..+. .++. ..|..+|+.|.... ..+-++++.+...|+
T Consensus 256 ~~e~-t~~a-------~~g~~iH~~H~egaggghapdii~~~~~~~v 294 (568)
T PRK13207 256 FVED-TIAA-------FKGRTIHTFHTEGAGGGHAPDIIKVAGEPNV 294 (568)
T ss_pred HHHH-HHHh-------cCCCEEEEEeecCCCcCCchHHHHHhhcCCC
Confidence 1122 2222 23888999998731 134556777766664
No 43
>PRK13985 ureB urease subunit beta; Provisional
Probab=99.91 E-value=9.1e-23 Score=198.74 Aligned_cols=213 Identities=25% Similarity=0.329 Sum_probs=151.1
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCC---------CCCCCcEEeCCCCEEecceeecccccCCCCC
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPR---------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~---------~~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 112 (399)
..+++|+|++|+|..+...++|.|+||||++|++...... -..+.++||++|++|+|||||+|+|+..|+.
T Consensus 64 ~~DlVI~Na~IiD~~gi~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH~~~P~~ 143 (568)
T PRK13985 64 ELDLIITNALIIDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQ 143 (568)
T ss_pred cCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCCCCCccH
Confidence 4689999999999777778999999999999997532110 0125689999999999999999999976642
Q ss_pred CCcCchHHHHHHHHcCCeeeeecCcC----CCCCCCCcHH--HHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHH
Q 015826 113 TEWEGFPSGTKAAAAGGITTLIDMPL----NSDPSTISTE--TLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL 186 (399)
Q Consensus 113 ~~~e~~~~~~~~al~~GvTtv~d~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 186 (399)
...++++||||+++++. ++.|...+.. .++..++.+... .+++++++.. .....+++++++
T Consensus 144 ---------~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~~-pvn~gf~gkG---~~~~l~eL~el~ 210 (568)
T PRK13985 144 ---------IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEY-SMNLGFLGKG---NSSNDASLADQI 210 (568)
T ss_pred ---------HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhcc-CccEEEecCC---ccCCHHHHHHHH
Confidence 24699999999999531 3344333322 245555555433 4788877532 223467889999
Q ss_pred HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHH
Q 015826 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 266 (399)
Q Consensus 187 ~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~ 266 (399)
++|+.+||++..+ ..++..+.++++.|+++|+++.+|+++-.+.
T Consensus 211 ~aGA~GfK~~ed~-------g~t~~~I~~aL~vA~~~dv~V~iHtdtlne~----------------------------- 254 (568)
T PRK13985 211 EAGAIGFKIHEDW-------GTTPSAINHALDVADKYDVQVAIHTDTLNEA----------------------------- 254 (568)
T ss_pred HcCCEEEEECCcc-------CCCHHHHHHHHHHHHHcCCEEEEeCCCCCCc-----------------------------
Confidence 9999999975322 3688999999999999999999999875431
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEEEEcCCCh--hHHHHHHHHHHHCC
Q 015826 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNG 312 (399)
Q Consensus 267 ~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~--~~~l~~i~~ak~~G 312 (399)
+..+. .++.. .|..+|++|+... ..+-++|+-+...+
T Consensus 255 -g~~E~-t~aa~-------~gr~iH~~H~egaggghapdi~~~~~~~n 293 (568)
T PRK13985 255 -GCVED-TMAAI-------AGRTMHTFHTEGAGGGHAPDIIKVAGEHN 293 (568)
T ss_pred -hhhHH-HHHHh-------cCCeEEEEeccCCCccchhhHHHHcCCCC
Confidence 11122 23332 3888999999753 24566777765443
No 44
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=99.91 E-value=1.3e-22 Score=198.42 Aligned_cols=174 Identities=25% Similarity=0.322 Sum_probs=134.5
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCC--C-------CCCCCcEEeCCCCEEecceeecccccCCCCC
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWP--R-------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~--~-------~~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 112 (399)
.++++|+|++|++..+...++|.|+||||++|++..... . ...+.++||++|++|+|||||+|+|+..|++
T Consensus 64 ~~DlVI~Na~IiD~~gi~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~~~P~~ 143 (567)
T cd00375 64 VLDLVITNALIIDYTGIYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHFICPQQ 143 (567)
T ss_pred cCCEEEECeEEECCCCcEEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCCCCccH
Confidence 358999999999987777899999999999998753210 0 0124689999999999999999999977632
Q ss_pred CCcCchHHHHHHHHcCCeeeeecCcC------CCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHH
Q 015826 113 TEWEGFPSGTKAAAAGGITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL 186 (399)
Q Consensus 113 ~~~e~~~~~~~~al~~GvTtv~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 186 (399)
.++++++||||+++++. ++.+.......++..++.+.. ..+++++++.. ..+..+++.+++
T Consensus 144 ---------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~~-~pin~g~~gkg---~~~~l~eL~e~~ 210 (567)
T cd00375 144 ---------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADG-LPVNIGFLGKG---NGSSPDALAEQI 210 (567)
T ss_pred ---------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhhc-CCceEEEEecC---ccccHHHHHHHH
Confidence 47899999999999721 222333456777777777663 45788887532 234567899999
Q ss_pred HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015826 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (399)
Q Consensus 187 ~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 235 (399)
++|+.+||++..+ ..++..+.++++.|+++|+++.+|+++-.
T Consensus 211 ~aGA~GfK~~eD~-------g~t~~~i~~aL~~A~~~dv~VaiHadtln 252 (567)
T cd00375 211 EAGACGLKLHEDW-------GATPAAIDTCLSVADEYDVQVAIHTDTLN 252 (567)
T ss_pred HcCCEEEEecCCC-------CCCHHHHHHHHHHHHhhCCEEEEECCCCC
Confidence 9999999986432 25889999999999999999999998744
No 45
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=99.91 E-value=1.2e-23 Score=208.55 Aligned_cols=268 Identities=21% Similarity=0.284 Sum_probs=153.0
Q ss_pred ccEEEEccEEEcCCC---ceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCC---CC--
Q 015826 43 NQYWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR---TE-- 114 (399)
Q Consensus 43 ~~~li~n~~vv~~~~---~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~---~~-- 114 (399)
|+++|+|++|+++++ ..+++|+|+||+|++|++....+ ...++||++|++|||||||+|+|+..... ..
T Consensus 1 ~~~~i~~~~vi~~~~~~~~~~g~V~I~dg~I~~vg~~~~~~---~~~~vID~~G~~vlPGlId~H~H~~~~~~~g~~~~~ 77 (445)
T PRK07228 1 MTILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLE---DYDDHIDATGKVVIPGLIQGHIHLCQTLFRGIADDL 77 (445)
T ss_pred CeEEEEccEEEecCCCcEecccEEEEECCEEEEecCCcccC---cCCeEEeCCCCEEecCEEecccCCccccceeccCCC
Confidence 468999999999864 35899999999999999764321 25679999999999999999999975411 10
Q ss_pred ----c--------------Cch----HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhc----cCceeEEee
Q 015826 115 ----W--------------EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK----RIYVDVGFW 168 (399)
Q Consensus 115 ----~--------------e~~----~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 168 (399)
| ++. .....+++++||||++|+. +.. .....++...+.... ...++++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~-~~~---~~~~~~~a~~~~g~r~~~~~~~~~~~~~ 153 (445)
T PRK07228 78 ELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIVDME-SVH---HTDSAFEAAGESGIRAVLGKVMMDYGDD 153 (445)
T ss_pred CHHHHHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEccc-ccc---ChHHHHHHHHHcCCeEEEecceecCCcC
Confidence 0 011 1234566899999999987 211 112223322222110 111111100
Q ss_pred --eeeeCCChhhHHHHHHHHHc--CCc--EEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhhchhHH
Q 015826 169 --GGLVPENAYNASALEALLNA--GVL--GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGSERHV 241 (399)
Q Consensus 169 --~~~~~~~~~~~~~l~~l~~~--G~~--~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~~~~~ 241 (399)
........+.+++..++++. |.. .+...+.+. ....+++++++++++.|+++|+++++|+ ++........
T Consensus 154 ~p~~~~~~~~~~l~~~~~~i~~~~g~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~ 230 (445)
T PRK07228 154 VPEGLQEDTEASLAESVRLLEKWHGADNGRIRYAFTPR---FAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVE 230 (445)
T ss_pred CCccccccHHHHHHHHHHHHHHhcCCCCCceEEEEeCC---CCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHH
Confidence 00000111223444444432 432 232223332 1235789999999999999999999998 4433222111
Q ss_pred hhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC--ChhHHHHHHHHHHHCCCCEEEEc
Q 015826 242 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS--DASSSLDLLMEAKTNGDSITVET 319 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s--~~~~~l~~i~~ak~~G~~vt~e~ 319 (399)
...+ .+ .+..+.... ..+.++.++|.+ +. +.++.+ ++.|+.+ .+
T Consensus 231 ~~~g-------------~~-------~~~~l~~~g--------~~~~~~~l~H~~~~~~-~~~~~~---~~~g~~v--~~ 276 (445)
T PRK07228 231 EETG-------------MR-------NIHYLDEVG--------LTGEDLILAHCVWLDE-EEREIL---AETGTHV--TH 276 (445)
T ss_pred HHhC-------------CC-------HHHHHHHCC--------CCCCCcEEEEEecCCH-HHHHHH---HHcCCeE--EE
Confidence 1111 00 111111111 125567777776 33 555555 5556554 47
Q ss_pred cccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCCC
Q 015826 320 CPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV 373 (399)
Q Consensus 320 ~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~~ 373 (399)
||.. +. .. ......+++.++.|...++|||+.+++
T Consensus 277 ~P~~-----~~--------~~------~~~~~p~~~~~~~Gv~v~lGtD~~~~~ 311 (445)
T PRK07228 277 CPSS-----NL--------KL------ASGIAPVPDLLERGINVALGADGAPCN 311 (445)
T ss_pred ChHH-----hh--------hc------ccccCcHHHHHHCCCeEEEcCCCCccC
Confidence 8851 00 00 112345888999999999999998764
No 46
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=99.91 E-value=1.8e-22 Score=196.75 Aligned_cols=112 Identities=23% Similarity=0.318 Sum_probs=79.8
Q ss_pred EEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCC---CcCchHHH
Q 015826 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---EWEGFPSG 121 (399)
Q Consensus 45 ~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~---~~e~~~~~ 121 (399)
++|+|++|++++...+++|+|+||+|++|++....+ ...+.++||++|++|||||||+|+|+...+.. ...+....
T Consensus 2 ~~i~~~~v~~~~~~~~~~v~i~~g~I~~v~~~~~~~-~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~~~~~~ 80 (387)
T cd01308 2 TLIKNAEVYAPEYLGKKDILIAGGKILAIEDQLNLP-GYENVTVVDLHGKILVPGFIDQHVHIIGGGGEGGPSTRTPEVT 80 (387)
T ss_pred EEEECcEEeCCCCccceEEEEECCEEEEEeCCcccc-cCCCCeEEECCCCEEccCeeehhhCcccccCCCcccccCHHHH
Confidence 479999999977666889999999999999764322 12356899999999999999999999753211 11223345
Q ss_pred HHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHh
Q 015826 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 158 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~ 158 (399)
..+++++|+||++|++ +..+.....+.+....+.+.
T Consensus 81 ~~~~~~~G~tt~~d~~-~~~~~~~~~~~~~~~~~~~~ 116 (387)
T cd01308 81 LSDLTTAGVTTVVGCL-GTDGISRSMEDLLAKARALE 116 (387)
T ss_pred HHHHHhCCceEEecCc-CCCCCCCCHHHHHHHHHHHH
Confidence 5688999999999997 33333334454444444433
No 47
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=99.90 E-value=6.1e-22 Score=195.60 Aligned_cols=174 Identities=24% Similarity=0.282 Sum_probs=130.0
Q ss_pred CccEEEEccEEEcC-CCceeeEEEEECCEEEEeccCCCCC--C-------CCCCCcEEeCCCCEEecceeecccccCCCC
Q 015826 42 YNQYWLTSKRIVTP-KGVISGAVEIKEGNIISIVSEEDWP--R-------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111 (399)
Q Consensus 42 ~~~~li~n~~vv~~-~~~~~~~V~I~dG~I~~Ig~~~~~~--~-------~~~~~~vID~~G~~vlPGlID~H~H~~~~~ 111 (399)
..+++|+|++|+|+ .+...++|.|+||||++|++..... . ...+.++||++|++|+|||||+|+|+..|+
T Consensus 67 ~~DlVI~Ng~ViD~~~gi~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~~P~ 146 (572)
T PRK13309 67 VLDLVITNVTIVDARLGVIKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLISPQ 146 (572)
T ss_pred cCCEEEECeEEEcCCCCEEEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccCCcc
Confidence 46899999999996 4566899999999999998743211 0 001368999999999999999999998764
Q ss_pred CCCcCchHHHHHHHHcCCeeeeecCcC------CCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHH
Q 015826 112 RTEWEGFPSGTKAAAAGGITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEAL 185 (399)
Q Consensus 112 ~~~~e~~~~~~~~al~~GvTtv~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 185 (399)
+ .++++.+||||+++++. +..+.......++..++.+.. ..+++++++.. .....+++.++
T Consensus 147 ~---------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~~-~pvn~g~~gkg---~~~~~~~l~el 213 (572)
T PRK13309 147 Q---------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEG-LPVNVGILGKG---NSYGRGPLLEQ 213 (572)
T ss_pred h---------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhcc-CCcCEEEEcCC---CCCCHHHHHHH
Confidence 2 36899999999997531 222223345567777666653 35788877532 21234678888
Q ss_pred HHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015826 186 LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (399)
Q Consensus 186 ~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 235 (399)
+++|+.+||++..+ ..+++.+.+++++|+++|+++.+|+++-.
T Consensus 214 ~~aGa~gfk~~~d~-------g~t~~~L~~aLe~A~~~gv~VaiH~d~ln 256 (572)
T PRK13309 214 AIAGVAGYKVHEDW-------GATAAALRHALRVADEVDIQVAVHTDSLN 256 (572)
T ss_pred HhcCcEEEEecCcC-------CcCHHHHHHHHHHHHhcCCEEEEeCCccc
Confidence 89999999986432 24889999999999999999999998643
No 48
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=99.89 E-value=9.7e-22 Score=193.98 Aligned_cols=174 Identities=24% Similarity=0.307 Sum_probs=126.1
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCC--CC-----CCCCcEEeCCCCEEecceeecccccCCCCCCC
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWP--RN-----SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE 114 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~--~~-----~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~ 114 (399)
.++++|+|++|+|..+...++|+|+||||++|++..... .. ..+.++||++|++|+|||||+|+|+..++
T Consensus 65 ~MDlVIkNg~VID~~gi~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~P~--- 141 (567)
T TIGR01792 65 VLDLVITNALILDWTGIYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHYISPQ--- 141 (567)
T ss_pred cCcEEEECeEEECCCCeEEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCCCCcc---
Confidence 468999999999977767899999999999998753211 00 02468999999999999999999996652
Q ss_pred cCchHHHHHHHHcCCeeeeecCcC----CCCCCCCcHHHH--HHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHc
Q 015826 115 WEGFPSGTKAAAAGGITTLIDMPL----NSDPSTISTETL--KLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNA 188 (399)
Q Consensus 115 ~e~~~~~~~~al~~GvTtv~d~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 188 (399)
..+.++.+||||+++++. ++.+...+...+ ....+... ...+++++++.. .....+++++++++
T Consensus 142 ------~~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa~-~~~in~g~~g~g---~~~~~~~L~e~i~a 211 (567)
T TIGR01792 142 ------QVQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAAD-GLPINFGFTGKG---SGSGPAALIEQIEA 211 (567)
T ss_pred ------HHHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHhc-cCCccEEEEeCC---ccchHHHHHHHHHc
Confidence 368899999999999542 222322222222 22333333 345677665321 12245678888889
Q ss_pred CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015826 189 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (399)
Q Consensus 189 G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 235 (399)
|+.+||.+..+ .++++.+++++++|+++|+++++|+++..
T Consensus 212 Ga~gfK~h~~y-------~~s~e~L~~al~~A~e~gv~V~iH~ET~~ 251 (567)
T TIGR01792 212 GACGLKVHEDW-------GATPAAIDNALSVADEYDVQVAVHTDTLN 251 (567)
T ss_pred CCcEEEeCCCC-------CCCHHHHHHHHHHHHHcCCEEEEeCCCcc
Confidence 99999976432 47899999999999999999999996644
No 49
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=99.88 E-value=2.7e-21 Score=190.12 Aligned_cols=266 Identities=20% Similarity=0.239 Sum_probs=153.8
Q ss_pred EEEEccEEEcCCC---ceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCC---CCC-----
Q 015826 45 YWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT----- 113 (399)
Q Consensus 45 ~li~n~~vv~~~~---~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~~----- 113 (399)
++|+|++|+++++ ..+++|+|+||||++|++..+.+. +++.++||++|++|+|||||+|+|+..+ +..
T Consensus 1 ~~i~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~-~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~~~~~~~ 79 (411)
T cd01298 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPA-YPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADDLPL 79 (411)
T ss_pred CeEEeeEEEEeCCcceeecceEEEECCEEEEecCcccccc-CCcCeEEeCCCCEEccCccccccchhhHHhhcccCCCCH
Confidence 4799999999753 357999999999999997644321 1356899999999999999999998643 110
Q ss_pred ---------------CcCchHH----HHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeC-
Q 015826 114 ---------------EWEGFPS----GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP- 173 (399)
Q Consensus 114 ---------------~~e~~~~----~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 173 (399)
+.++++. .+..++++||||++++. +..+ +...+..+....+..+.+... ....
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~-----~~~~~~~~~~g~r~~~~~~~~-~~~~~ 152 (411)
T cd01298 80 MEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMY-FFYP-----DAVAEAAEELGIRAVLGRGIM-DLGTE 152 (411)
T ss_pred HHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECcc-ccch-----HHHHHHHHHhCCeEEEEccee-cCCCc
Confidence 1122222 23456789999999987 2211 122111111111111111111 0010
Q ss_pred ---CChhhHHHHHHHH----HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhhchhHHhhcc
Q 015826 174 ---ENAYNASALEALL----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGSERHVKLED 245 (399)
Q Consensus 174 ---~~~~~~~~l~~l~----~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~~~~~~~~~ 245 (399)
......+++.+++ ..|...+|+++.+.. ...+++++++++++.|+++|+++.+|+ ++...........+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~ 229 (411)
T cd01298 153 DVEETEEALAEAERLIREWHGAADGRIRVALAPHA---PYTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYG 229 (411)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCC---CccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhC
Confidence 1112234444444 335677888776542 124689999999999999999999996 44332221111110
Q ss_pred CcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccc
Q 015826 246 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLA 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~ 325 (399)
. ..+..+.+.. ..+.++.+.|.+.. +-+.++..++.| +++.+||++-.
T Consensus 230 --------------~------~~~~~~~~~~--------~~~~~~~i~H~~~l--~~~~~~~l~~~g--i~~~~~p~~~~ 277 (411)
T cd01298 230 --------------K------RPVEYLEELG--------LLGPDVVLAHCVWL--TDEEIELLAETG--TGVAHNPASNM 277 (411)
T ss_pred --------------C------CHHHHHHHcC--------CCCCCeEEEEecCC--CHHHHHHHHHcC--CeEEEChHHhh
Confidence 0 0111111111 12456667776643 123455666666 56678886311
Q ss_pred cccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCC
Q 015826 326 FSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 372 (399)
Q Consensus 326 ~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~ 372 (399)
. + +. ..+| +++.++.|...++|||+.+.
T Consensus 278 ~----~---~~---~~~~---------~~~~~~~Gv~~~~GsD~~~~ 305 (411)
T cd01298 278 K----L---AS---GIAP---------VPEMLEAGVNVGLGTDGAAS 305 (411)
T ss_pred h----h---hh---CCCC---------HHHHHHCCCcEEEeCCCCcc
Confidence 0 0 10 1222 56778899999999998753
No 50
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=99.87 E-value=2.6e-20 Score=183.70 Aligned_cols=186 Identities=18% Similarity=0.224 Sum_probs=111.7
Q ss_pred ccEEEEccEEEcCCC---c-eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCC-----
Q 015826 43 NQYWLTSKRIVTPKG---V-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT----- 113 (399)
Q Consensus 43 ~~~li~n~~vv~~~~---~-~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~----- 113 (399)
++++|+|+.|++++. . .+++|+|+||+|++||+..... .+++.++||++|++|||||||+|+|+.+..+.
T Consensus 1 ~~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~~-~~~~~~viD~~g~~i~PGlVn~H~H~~~~~~rg~~~~ 79 (435)
T PRK15493 1 MKTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFAS-DFEVDEVIDMKGKWVLPGLVNTHTHVVMSLLRGIGDD 79 (435)
T ss_pred CeEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCccccc-cCCCCeEEeCCCCEEccceeecccCccchhhhccCCC
Confidence 368999999997654 2 4789999999999999853221 12356899999999999999999999654111
Q ss_pred ----Cc--------------Cch----HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeee-e
Q 015826 114 ----EW--------------EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG-G 170 (399)
Q Consensus 114 ----~~--------------e~~----~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 170 (399)
.| ++. ..+..+++++||||++|+.. ... ...+.+.+..+...-+..+....+. +
T Consensus 80 ~~l~~wl~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~-~~~--~~~~~~~~a~~~~GiR~~~~~~~~~~~ 156 (435)
T PRK15493 80 MLLQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSDMFN-PIG--VDQDAIMETVSRSGMRAAVSRTLFSFG 156 (435)
T ss_pred CCHHHHHHhchhhchhcCCHHHHHHHHHHHHHHHHhCCccEEEcccc-ccc--cCHHHHHHHHHHcCCcEEEeeeecCCC
Confidence 00 111 12356679999999999862 111 1122222222221112211111111 0
Q ss_pred eeCCChhhHHHHHHHHHc--C-CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChh
Q 015826 171 LVPENAYNASALEALLNA--G-VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEK 235 (399)
Q Consensus 171 ~~~~~~~~~~~l~~l~~~--G-~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~ 235 (399)
.........++..++++. + ...++..+.++. ...++++.++++++.|+++|+++++|+ |+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~ 222 (435)
T PRK15493 157 TKEDEKKAIEEAEKYVKRYYNESGMLTTMVAPHS---PYTCSTELLEECARIAVENQTMVHIHLSETER 222 (435)
T ss_pred CCccHHHHHHHHHHHHHHhcCCCCCeEEEEeCCC---CCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHH
Confidence 011111223333333321 1 233566555542 235799999999999999999999997 4433
No 51
>PRK06687 chlorohydrolase; Validated
Probab=99.87 E-value=2.7e-20 Score=183.25 Aligned_cols=180 Identities=18% Similarity=0.221 Sum_probs=112.5
Q ss_pred EEEEccEEEcCCCc----eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCC---C---
Q 015826 45 YWLTSKRIVTPKGV----ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---E--- 114 (399)
Q Consensus 45 ~li~n~~vv~~~~~----~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~---~--- 114 (399)
.+|+|+.|+++++. .+++|+|+||+|++|++..+... ....++||++|++|||||||+|+|+.+.... .
T Consensus 2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~~~-~~~~~viD~~g~~v~PGlIn~H~H~~~~~~rg~~~~~~ 80 (419)
T PRK06687 2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPAFL-EQAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDDSN 80 (419)
T ss_pred cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCcccccc-cccCeEEeCCCCEEccceeeeccCCCccccccccCCCC
Confidence 46999999987762 36899999999999998543211 1246799999999999999999999765321 0
Q ss_pred -----------c------CchH----HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEee--eee
Q 015826 115 -----------W------EGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW--GGL 171 (399)
Q Consensus 115 -----------~------e~~~----~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 171 (399)
. ++.+ ....+++++||||++|+. +..+ ......++...+. .....++.. ...
T Consensus 81 ~~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~-~~~~-~~~~~~~~a~~~~---Gir~~~~~~~~~~~ 155 (419)
T PRK06687 81 LHEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFNDMY-NPNG-VDIQQIYQVVKTS---KMRCYFSPTLFSSE 155 (419)
T ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceeehhh-cccc-ccHHHHHHHHHHh---CCceEeccccccCC
Confidence 0 1122 234556999999999986 2211 1112222222211 112222221 111
Q ss_pred eCCChhhHHHHHHHHH----cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 172 VPENAYNASALEALLN----AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 172 ~~~~~~~~~~l~~l~~----~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
.....+..++.+++++ .+...++..++++. ...++++.++++++.|+++|+++++|+..
T Consensus 156 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~---~~~~s~e~l~~~~~~A~~~g~~i~~H~~e 218 (419)
T PRK06687 156 TETTAETISRTRSIIDEILKYKNPNFKVMVAPHS---PYSCSRDLLEASLEMAKELNIPLHVHVAE 218 (419)
T ss_pred cccHHHHHHHHHHHHHHHhccCCCceEEEEeCCC---CCCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 1111222333444432 33344777776642 24689999999999999999999999743
No 52
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=99.85 E-value=2.5e-19 Score=175.29 Aligned_cols=268 Identities=17% Similarity=0.181 Sum_probs=155.3
Q ss_pred EEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCC---CCC----------
Q 015826 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT---------- 113 (399)
Q Consensus 47 i~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~~---------- 113 (399)
|+|++|+|+. ..+++|+|+||+|++|++..+.+ ++.++||++|++|||||||+|+|+.+. +..
T Consensus 2 ~~~~~~~~~~-~~~~~v~I~~g~I~~Vg~~~~~~---~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~~~~~~ 77 (398)
T cd01293 2 LRNARLADGG-TALVDIAIEDGRIAAIGPALAVP---PDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNNSGGTLLE 77 (398)
T ss_pred eeeeEEeCCC-ceEEEEEEECCEEEEEecCCCCC---CCCceEeCCCCEEccCEeeeeeccCcccccCCCCCCCccccHH
Confidence 7899999974 46789999999999999865422 367899999999999999999999753 110
Q ss_pred ------------CcCch----HHHHHHHHcCCeeeeecCcCCCCCCC--CcHHHHHHHHHHHhccCceeEEeeeeeeC--
Q 015826 114 ------------EWEGF----PSGTKAAAAGGITTLIDMPLNSDPST--ISTETLKLKVDAAEKRIYVDVGFWGGLVP-- 173 (399)
Q Consensus 114 ------------~~e~~----~~~~~~al~~GvTtv~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 173 (399)
+.++. ......++++||||++++.. ..+.. ...+.+.+..+..... +.+... .+..
T Consensus 78 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~ 153 (398)
T cd01293 78 AIIAWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHVD-VDPAAGLKALEALLELREEWADL--IDLQIV-AFPQHG 153 (398)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHcChhheeeeec-ccccccchHHHHHHHHHHHhhcc--ceEEEE-eccCcc
Confidence 00111 23356779999999988752 11210 1122222222222211 111111 1111
Q ss_pred --CChhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCch
Q 015826 174 --ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 251 (399)
Q Consensus 174 --~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~ 251 (399)
...+..+.+++..+.|+..++.+ .+. ....+++++++++++.|+++|+++++|+...... .
T Consensus 154 ~~~~~~~~~~v~~~~~~g~~~~~~~-~~~---~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~-------------~ 216 (398)
T cd01293 154 LLSTPGGEELMREALKMGADVVGGI-PPA---EIDEDGEESLDTLFELAQEHGLDIDLHLDETDDP-------------G 216 (398)
T ss_pred ccCCCCHHHHHHHHHHhCCCEEeCC-CCC---cCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCc-------------c
Confidence 11234566777777776433321 111 1135688999999999999999999998543210 0
Q ss_pred hhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh-----hHHHHHHHHHHHCCCCEEEEcccccccc
Q 015826 252 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYLAF 326 (399)
Q Consensus 252 ~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~-----~~~l~~i~~ak~~G~~vt~e~~p~~L~~ 326 (399)
...+.+.++.+++.+. ..++.+.|.... .+..+.++..+++|+.++ .||..-..
T Consensus 217 --------------~~~~~~~~~~~~~~g~-----~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~--~~p~s~~~ 275 (398)
T cd01293 217 --------------SRTLEELAEEAERRGM-----QGRVTCSHATALGSLPEAEVSRLADLLAEAGISVV--SLPPINLY 275 (398)
T ss_pred --------------hhHHHHHHHHHHHhCC-----CCCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEE--eCCCcchh
Confidence 0122333444444311 124677886532 123467888888887654 45531110
Q ss_pred ccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCC
Q 015826 327 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (399)
Q Consensus 327 ~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~ 370 (399)
.... . ...|. ......+.+.++.|....+|||..
T Consensus 276 l~~~-~------~~~~~---~~~~~~~~~~~~~Gv~v~lGTD~~ 309 (398)
T cd01293 276 LQGR-E------DTTPK---RRGVTPVKELRAAGVNVALGSDNV 309 (398)
T ss_pred hccc-c------cCCCC---CCCCCcHHHHHHCCCeEEECCCCC
Confidence 0000 0 00111 112345677788999999999984
No 53
>PLN02303 urease
Probab=99.85 E-value=5.9e-20 Score=185.51 Aligned_cols=174 Identities=24% Similarity=0.314 Sum_probs=129.1
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCC--CCC-------CCCCcEEeCCCCEEecceeecccccCCCCC
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDW--PRN-------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~--~~~-------~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 112 (399)
..+++|+|++|+|..+...++|+|+||||++|++.... ... ..+.++||++|++|+|||||+|+|+..|++
T Consensus 333 ~~DlVItNa~IID~~Gi~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIVtPG~ID~HVHf~~Pg~ 412 (837)
T PLN02303 333 SLDTVITNAVIIDYTGIYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIVTAGGIDCHVHFICPQL 412 (837)
T ss_pred cCCEEEeCeEEECCCCcEEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEEEeCEEEeecCCCCCcH
Confidence 46899999999997777789999999999999974211 000 024689999999999999999999986642
Q ss_pred CCcCchHHHHHHHHcCCeeeeecCcC----CCCCCC--CcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHH
Q 015826 113 TEWEGFPSGTKAAAAGGITTLIDMPL----NSDPST--ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL 186 (399)
Q Consensus 113 ~~~e~~~~~~~~al~~GvTtv~d~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 186 (399)
.+.++.+|+||+++++. ++.+.. ...+.++.+++... ...+++++++.. .....+++++++
T Consensus 413 ---------~~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~-~~pvn~Gf~gkG---~~s~l~eL~eli 479 (837)
T PLN02303 413 ---------ATEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTD-DLPLNFGFTGKG---NTAKPEGLHEII 479 (837)
T ss_pred ---------HHHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcc-cCCCcEEEEccC---cccCHHHHHHHH
Confidence 25666777777776642 223333 24677777776543 345788877532 223467888888
Q ss_pred HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015826 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (399)
Q Consensus 187 ~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 235 (399)
+.|+.+||.+..+ ..+++.+.+++++|+++|+++++|+|+..
T Consensus 480 eaGa~GfK~h~d~-------gvTpelL~raLe~AkelGVpVaIHAEdLn 521 (837)
T PLN02303 480 KAGAMGLKLHEDW-------GTTPAAIDNCLDVAEEYDIQVTIHTDTLN 521 (837)
T ss_pred HcCcEEEEECCCC-------CCCHHHHHHHHHHHHHcCCEEEEecCccc
Confidence 9999999976321 36789999999999999999999998843
No 54
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=99.84 E-value=6.3e-19 Score=169.97 Aligned_cols=264 Identities=19% Similarity=0.209 Sum_probs=153.5
Q ss_pred EEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCc-EEeCCCCEEecceeecccccCCCCCCC---cCchHH
Q 015826 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQ-VVDYGEAVIMPGLIDVHAHLDDPGRTE---WEGFPS 120 (399)
Q Consensus 45 ~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~-vID~~G~~vlPGlID~H~H~~~~~~~~---~e~~~~ 120 (399)
++|+|++|++++.....+|+|+||||++|++..+......+.+ ++|++|++|+|||||+|+|+...+... ...-..
T Consensus 2 ~li~n~~v~~~~~~~~~dvlI~~gkI~~Ig~~~~~~~~~~~~~~i~d~~G~~v~PGlID~HvH~~~gg~~~~~~~~~~e~ 81 (389)
T TIGR01975 2 TLLKGAEVYAPEYIGKKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQHVHIIGGGGEGGPTTRTPEL 81 (389)
T ss_pred EEEECcEEEcCCcCcceeEEEECCEEEEEcCCccccccCCCCeEEECCCCCEEccCEeehhhccccccccCCCccCCHHH
Confidence 5799999999876567899999999999998654321111234 556699999999999999987542111 122234
Q ss_pred HHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeee-C---CChhhHHHHHHHHHcCCcEEE-E
Q 015826 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-P---ENAYNASALEALLNAGVLGLK-S 195 (399)
Q Consensus 121 ~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~l~~~G~~~ik-~ 195 (399)
.+.+++++||||++++. ++.......+.+....+.....+.-.+...+... + -+......+.. ..-+.|+| +
T Consensus 82 ~~~e~l~~GvTTv~d~~-g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~~p~~t~t~~~~~d~~~--~d~iiG~~~i 158 (389)
T TIGR01975 82 TLSDITKGGVTTVVGLL-GTDGITRHMESLLAKARALEEEGISCYMLTGAYHVPSRTITGSVESDLLL--IDKVIGVGEI 158 (389)
T ss_pred HHHHHHhCCcEEEecCc-ccCccccChhhHHHHHHHHHHhCCEEEEEcccccCCCcccccchhhheee--ehhhcccceE
Confidence 57788999999999987 4433333444333344444332222222221110 0 01111111211 22345664 6
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHhcC----CC--EEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHH
Q 015826 196 FMCPSGINDFPMTNASHIKEGLSVLARYK----RP--LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 269 (399)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g----~~--v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v 269 (399)
-++.+- ....+.++|+++.+.++..| ++ +++|.-+... .+
T Consensus 159 a~sd~r---~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~~-------------------------------~l 204 (389)
T TIGR01975 159 AISDHR---SAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDSKR-------------------------------AL 204 (389)
T ss_pred EEccCc---CCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchh-------------------------------hH
Confidence 555432 23468899999999999988 88 9999865432 34
Q ss_pred HHHHHHHhhhccCCCCCCceEEEEcCC---ChhHHHHHHHHHHHCCCCEEEE--ccccccccccccCCCCCcceEEcCCC
Q 015826 270 RELLTVAKDTRTDGPAEGAHLHIVHLS---DASSSLDLLMEAKTNGDSITVE--TCPHYLAFSAEEIPDGDTRFKCAPPI 344 (399)
Q Consensus 270 ~~~~~~a~~~~~~~~~~g~~vhi~H~s---~~~~~l~~i~~ak~~G~~vt~e--~~p~~L~~~~~~~~~~~~~~~~~Ppl 344 (399)
..+.++.++. +++.|+-|-+ ...+-++...++.++|..+-.. .+|.+| . ..
T Consensus 205 ~~l~~~~~~~-------di~~~~f~pth~~r~~~l~~~~i~~~~~gg~iDv~~~~~~~~l-------~--------~~-- 260 (389)
T TIGR01975 205 QPIYELVENT-------DVPITQFLPTHINRNVPLFEAGLEFAKKGGTIDLTSSIDPQFR-------K--------EG-- 260 (389)
T ss_pred HHHHHHHHhc-------CCChhheecCccCCCHHHHHHHHHHHHhCCcEEEeCCCCccch-------h--------cc--
Confidence 5566666654 6666655443 2213444444445555432222 111100 0 00
Q ss_pred CChhhHHHHHHHHhcCCc-c--EEeCCCC
Q 015826 345 RDAANKEKLWEALMDGHI-D--MLSSDHS 370 (399)
Q Consensus 345 r~~~~~~~l~~~l~~G~i-d--~i~sdh~ 370 (399)
+....+.+.++++.|.. | +++||..
T Consensus 261 -~~~~~~~~~~~~~~Gv~~~~i~isSD~~ 288 (389)
T TIGR01975 261 -EVAPAEGIKKALEAGVPLEKVTFSSDGN 288 (389)
T ss_pred -ccChHHHHHHHHHcCCCcceEEEEeCCC
Confidence 11234567888889964 4 9999974
No 55
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=99.84 E-value=2.8e-19 Score=177.18 Aligned_cols=179 Identities=17% Similarity=0.205 Sum_probs=110.4
Q ss_pred ccEEEEccEEEcCCC---c-eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCC---CCC-
Q 015826 43 NQYWLTSKRIVTPKG---V-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG---RTE- 114 (399)
Q Consensus 43 ~~~li~n~~vv~~~~---~-~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~---~~~- 114 (399)
.+++|+|+.|++++. . .+++|+|+||+|++|++.......+++.++||++|++|||||||+|+|+.+.. ...
T Consensus 7 ~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~g~~~~ 86 (443)
T PRK09045 7 VDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARARYAAAETVELPDHVLIPGLINAHTHAAMSLLRGLADD 86 (443)
T ss_pred ccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCcccccccCCcceEEeCCCCEEecCEeccccChhhHhhhhccCC
Confidence 589999999998763 2 47899999999999998643322223568999999999999999999986531 100
Q ss_pred --------------------cCc----hHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeee
Q 015826 115 --------------------WEG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG 170 (399)
Q Consensus 115 --------------------~e~----~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (399)
.+. ......+++++||||++|+.. .+ ...++...+.. -+..+..... .
T Consensus 87 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d~~~--~~----~~~~~~~~~~G-~R~~~~~~~~-~ 158 (443)
T PRK09045 87 LPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDMYF--FP----EAAAEAAHQAG-MRAQIGMPVL-D 158 (443)
T ss_pred CCHHHHHHhhhhhhhhccCCHHHHHHHHHHHHHHHHhcCCcEEEeccc--cH----HHHHHHHHHcC-CeEEEecccc-c
Confidence 001 112345678999999998752 11 11111111111 1111111110 0
Q ss_pred ee----CCChhhHHHHHHHHH--cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 171 LV----PENAYNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 171 ~~----~~~~~~~~~l~~l~~--~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
.. ....+.+++..++.+ .+...++..+.+.. ...++++.++++++.|+++|+++.+|+.
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~ 223 (443)
T PRK09045 159 FPTAWASDADEYLAKGLELHDQWRHHPLISTAFAPHA---PYTVSDENLERIRTLAEQLDLPIHIHLH 223 (443)
T ss_pred CCCccccCHHHHHHHHHHHHHHhcCCCcEEEEEeCCC---CCCCCHHHHHHHHHHHHHcCCCEEEeec
Confidence 00 011122222223322 24556777766542 2367899999999999999999999984
No 56
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=99.84 E-value=4.6e-19 Score=175.59 Aligned_cols=186 Identities=17% Similarity=0.136 Sum_probs=106.8
Q ss_pred EEEEccEEEcCCC---c-eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCC------
Q 015826 45 YWLTSKRIVTPKG---V-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE------ 114 (399)
Q Consensus 45 ~li~n~~vv~~~~---~-~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~------ 114 (399)
++|+|++|++.++ . .+++|+|+||+|++|++........++.++||++|++|+|||||+|+|+.+..+..
T Consensus 2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~~~ 81 (442)
T PRK07203 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMANIP 81 (442)
T ss_pred EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhccccCCCeEEeCCCCEEecceeeccccchhhhhcccccccC
Confidence 5799999997543 2 36899999999999996432211113557999999999999999999986431100
Q ss_pred ---------------------cCchH----HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhc---cCceeEE
Q 015826 115 ---------------------WEGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYVDVG 166 (399)
Q Consensus 115 ---------------------~e~~~----~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 166 (399)
.++++ .+..+++++||||++|+....... ...++...+.... +..+.+.
T Consensus 82 ~~~~l~~~l~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~---~~~~~~~~~a~~~~GiR~~~~~~ 158 (442)
T PRK07203 82 PPPDFISILKNLWWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHHASPNYI---GGSLFTIADAAKKVGLRAMLCYE 158 (442)
T ss_pred CCCCHHHHHHhheehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccccccccc---cchHHHHHHHHHHhCCeEEEecc
Confidence 01111 223567899999999985211111 1112222222221 1111111
Q ss_pred eeeeeeCC-ChhhHHHHHHHHH--cCC--cEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhh
Q 015826 167 FWGGLVPE-NAYNASALEALLN--AGV--LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKG 236 (399)
Q Consensus 167 ~~~~~~~~-~~~~~~~l~~l~~--~G~--~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~~ 236 (399)
....-... ..+.+++..++++ .+. ..+...++++. .+.++++.++++.+.|+++|+++++|+ |+..+
T Consensus 159 ~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~---~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e 231 (442)
T PRK07203 159 TSDRDGEKELQEGVEENIRFIKHIDEAKDDMVEAMFGLHA---SFTLSDATLEKCREAVKETGRGYHIHVAEGIYD 231 (442)
T ss_pred cccCCcchhHHHHHHHHHHHHHHhcCCCCCceEEEEccCC---CcCcCHHHHHHHHHHHHHcCCcEEEEecCChHH
Confidence 10000000 0111222223322 111 13444555542 236789999999999999999999997 44443
No 57
>PRK14085 imidazolonepropionase; Provisional
Probab=99.84 E-value=2.5e-19 Score=174.07 Aligned_cols=177 Identities=20% Similarity=0.196 Sum_probs=109.1
Q ss_pred ccEEEEc-cEEEcCCC---------ceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCC
Q 015826 43 NQYWLTS-KRIVTPKG---------VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (399)
Q Consensus 43 ~~~li~n-~~vv~~~~---------~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 112 (399)
++++|+| +.|++.+. ..+++|+|+||||++|++..+.+ .+.++||++|++|||||||+|+|+...+.
T Consensus 1 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~---~~~~~iD~~g~~v~PGlId~H~Hl~~~~~ 77 (382)
T PRK14085 1 MSTLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAADAP---AADERVDAGGRAVLPGFVDSHSHLVFAGD 77 (382)
T ss_pred CcEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCccCC---CCCeEEeCCCCEEecCeEecCcCccccCC
Confidence 4688999 59998652 23689999999999999864322 25689999999999999999999965322
Q ss_pred C----------------------------CcCchH----HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc
Q 015826 113 T----------------------------EWEGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR 160 (399)
Q Consensus 113 ~----------------------------~~e~~~----~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (399)
. +.++++ ...+.++++||||+++++. . .....+.++...... +
T Consensus 78 r~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~~-~--~~~~~~~~~~~~~~~--~ 152 (382)
T PRK14085 78 RSAEFAARMAGEPYSAGGIRTTVAATRAASDEELRANVRRLVAEALRQGTTTVETKTG-Y--GLTVEDEARSARIAA--E 152 (382)
T ss_pred hhHHHHhhhcCCCccCCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCCc-C--CCCHHHHHHHHHHHH--H
Confidence 1 011212 2356789999999999862 1 111122222211111 1
Q ss_pred CceeEEeeee--eeC---CCh-hhHHH----HHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 161 IYVDVGFWGG--LVP---ENA-YNASA----LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 161 ~~~~~~~~~~--~~~---~~~-~~~~~----l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
........++ ..+ .+. ...+. +...++..+..+|++.... ..+.++++++++.|+++|+++.+|
T Consensus 153 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~idi~~~~~------~~~~~~l~~~~~~a~~~g~~v~~H 226 (382)
T PRK14085 153 FTDEVTFLGAHVVPPEYAGDADEYVDLVCGPMLDAVAPHARWIDVFCERG------AFDEDQSRRVLTAGRAAGLGLRVH 226 (382)
T ss_pred hhhcceeeccccCCcccCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCC------CCCHHHHHHHHHHHHHcCCCeEEE
Confidence 1001110100 001 111 11121 2244455577777765431 468899999999999999999999
Q ss_pred cCC
Q 015826 231 AEM 233 (399)
Q Consensus 231 ~~~ 233 (399)
+..
T Consensus 227 ~~~ 229 (382)
T PRK14085 227 GNQ 229 (382)
T ss_pred eCc
Confidence 853
No 58
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=99.84 E-value=6e-19 Score=176.93 Aligned_cols=174 Identities=19% Similarity=0.289 Sum_probs=128.4
Q ss_pred cEEEEccEEEcCCC--ceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHH
Q 015826 44 QYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (399)
Q Consensus 44 ~~li~n~~vv~~~~--~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~ 121 (399)
+++|+|++|+++.+ ...++|.|+||||++|++.. +.++||++|++|+|||||+|+|+..++.. .+ ..
T Consensus 1 dlli~n~~ivd~~~~~~~~~dI~I~~g~I~~ig~~~-------~~~viDa~G~~v~PG~ID~H~Hi~~~~~~-~~---~~ 69 (552)
T TIGR01178 1 DIVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKYN-------GVKVIDALGEYAVPGFIDAHIHIESSMLT-PS---EF 69 (552)
T ss_pred CEEEEeeEEEeCCCCcEEeeeEEEECCEEEEecCCC-------CCeEEECCCCEEEeCeEecccccCCCCCC-hh---HH
Confidence 47899999998654 35789999999999998641 35799999999999999999999877653 22 23
Q ss_pred HHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeee-eC-----CChh--hHHHHHHHHHc-CCcE
Q 015826 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL-VP-----ENAY--NASALEALLNA-GVLG 192 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~--~~~~l~~l~~~-G~~~ 192 (399)
.+.++.+||||++++| +..+.....+.++.+++.+. ...+++...... .+ .... ..++++++++. |+.+
T Consensus 70 ~~~al~~GvTtvv~~P-~~~~~v~g~~~~~~~~~~a~-~~~~d~~~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~~~V~g 147 (552)
T TIGR01178 70 AKLVLPHGVTTVVSDP-HEIANVNGEDGINFMLNNAK-KTPLNFYFMLPSCVPALQFETSGAVLTAEDIDELMELDEVLG 147 (552)
T ss_pred HHHHHCCCEEEEEcCC-CCCCCCCCHHHHHHHHHHhh-cCCcEEEEECCCCCCCCcccCCCCccCHHHHHHHHcCCCccE
Confidence 5678999999999999 55566667888888777665 456676433221 11 1111 36788888864 9999
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCCh
Q 015826 193 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 234 (399)
Q Consensus 193 ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 234 (399)
+|.+|.+++. ..+++++.+.++.++++|+++..|++..
T Consensus 148 lke~m~~~~v----~~~d~~~l~~i~~a~~~g~~I~gHap~l 185 (552)
T TIGR01178 148 LAEVMDYPGV----INADIEMLNKINSARKRNKVIDGHCPGL 185 (552)
T ss_pred EEEEecchhh----cCCCHHHHHHHHHHHhCCCEEEecCCCC
Confidence 9999977532 2244455555589999999999999743
No 59
>PRK05985 cytosine deaminase; Provisional
Probab=99.83 E-value=1.2e-18 Score=169.98 Aligned_cols=259 Identities=17% Similarity=0.127 Sum_probs=156.0
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCC-------
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE------- 114 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~------- 114 (399)
|.+++|+|++|+++. ..+|.|+||+|++|++..... ++.++||++|++|+|||||+|+|+.......
T Consensus 1 ~~~~~i~~~~i~~~~---~~~v~i~~g~i~~i~~~~~~~---~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~~~~~~~ 74 (391)
T PRK05985 1 MTDLLFRNVRPAGGA---AVDILIRDGRIAAIGPALAAP---PGAEVEDGGGALALPGLVDGHIHLDKTFWGDPWYPNEP 74 (391)
T ss_pred CCCEEEECcEECCCC---eeEEEEECCEEEEecCCCCCC---CCCcEEECCCCEEecceEeeEEccCccccCCccccCCC
Confidence 357899999999875 569999999999999864322 2457999999999999999999996432110
Q ss_pred c------------------Cch----HHHHHHHHcCCeeeeecCcCCCCCCC--CcHHHHHHHHHHHhccCceeEEe---
Q 015826 115 W------------------EGF----PSGTKAAAAGGITTLIDMPLNSDPST--ISTETLKLKVDAAEKRIYVDVGF--- 167 (399)
Q Consensus 115 ~------------------e~~----~~~~~~al~~GvTtv~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--- 167 (399)
+ +++ ....+.++++|+|+++++. ...|.. ...+.+.+..+..+.....++..
T Consensus 75 ~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 153 (391)
T PRK05985 75 GPSLRERIANERRRRAASGHPAAERALALARAAAAAGTTAMRSHV-DVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQ 153 (391)
T ss_pred CCCHHHHHHHHHHhhccchhHHHHHHHHHHHHHHhcCcceEEeeE-ccCCCcccchHHHHHHHHHHhhCcccEEEEeccC
Confidence 0 011 1235678899999999987 333321 22333333333333222222221
Q ss_pred eeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCc
Q 015826 168 WGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT 247 (399)
Q Consensus 168 ~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~ 247 (399)
.+.+ ......+.+++.++.|+..+. .+.+. ....++++++.++++.|+++|+++++|+.......
T Consensus 154 ~g~~--~~~~~~~ll~~~l~~g~~~~g-g~~p~---~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~--------- 218 (391)
T PRK05985 154 SGVL--SRPGTAELLDAALRAGADVVG-GLDPA---GIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELG--------- 218 (391)
T ss_pred cccc--CCcCHHHHHHHHHHcCCCEEe-CCCCC---CcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCcc---------
Confidence 1111 111234567777888875332 22221 12346779999999999999999999985432100
Q ss_pred CCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh-----hHHHHHHHHHHHCCCCEEEEcccc
Q 015826 248 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPH 322 (399)
Q Consensus 248 ~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~-----~~~l~~i~~ak~~G~~vt~e~~p~ 322 (399)
...+.++++.+++.+ ...++.+.|.... .+.-+.++..++.|+.|+.. +.
T Consensus 219 ------------------~~~~~~~~e~~~~~g-----~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~~--~~ 273 (391)
T PRK05985 219 ------------------AFQLERIAARTRALG-----MQGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMTN--AP 273 (391)
T ss_pred ------------------HHHHHHHHHHHHHhC-----CCCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEEe--CC
Confidence 112333444444331 1235889998532 01236677778888876532 11
Q ss_pred ccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCC
Q 015826 323 YLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (399)
Q Consensus 323 ~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~ 370 (399)
+ ..+ ...+.+.++.|..-.+|||..
T Consensus 274 -~--------~~~--------------~~~~~~l~~~Gv~v~lGtD~~ 298 (391)
T PRK05985 274 -G--------SVP--------------VPPVAALRAAGVTVFGGNDGI 298 (391)
T ss_pred -C--------CCC--------------CCCHHHHHHCCCeEEEecCCC
Confidence 0 001 113556677899999999973
No 60
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=99.83 E-value=3e-19 Score=158.11 Aligned_cols=251 Identities=19% Similarity=0.231 Sum_probs=166.3
Q ss_pred CCccEEEEccEEEcCCCc--eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCch
Q 015826 41 PYNQYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGF 118 (399)
Q Consensus 41 ~~~~~li~n~~vv~~~~~--~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~ 118 (399)
+|.+++++|++++++... ...+|.|.||||+++++. +.+ ...++||++|++|.||+||.|+|....+....
T Consensus 2 mqfdiLLt~~rlidpa~g~d~~tniai~ngkIaa~~d~-~ap---a~tq~Ida~Gc~VspG~iDlHvHvy~ggt~~~--- 74 (386)
T COG3964 2 MQFDILLTGGRLIDPARGIDEITNIAIINGKIAAADDY-PAP---AETQIIDADGCIVSPGLIDLHVHVYYGGTEGG--- 74 (386)
T ss_pred CccceeeeCCeecccccccCccceeeeecCeEEeccCc-CCC---hhheEEccCccEeccCeeeeeeEEecCCCccC---
Confidence 457999999999987653 357899999999999943 332 25689999999999999999999976543221
Q ss_pred HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHh---ccCceeEEeeeeeeCCC---h--hhHHHHHHHHHcC-
Q 015826 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE---KRIYVDVGFWGGLVPEN---A--YNASALEALLNAG- 189 (399)
Q Consensus 119 ~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~--~~~~~l~~l~~~G- 189 (399)
....+.+...||||++|.+ + ....+...+.+...... -..++++++.+-+...+ . -...++.++.+..
T Consensus 75 v~pd~~ga~~GvTTvVDAG-S--aGaanf~gF~r~vie~Sr~RI~Aflnvs~~Gl~a~nE~~d~~nid~d~i~aa~reh~ 151 (386)
T COG3964 75 VRPDMYGAPNGVTTVVDAG-S--AGAANFDGFYRTVIEASRVRIKAFLNVSPPGLTASNELYDPDNIDEDKIHAAFREHR 151 (386)
T ss_pred cCHHHccccCCceEEEecC-C--cCccchhhHHHHhhcchhheeeeeeeccCcceeeehhhCChhhCCHHHHHHHHHhCc
Confidence 1234667899999999987 2 22234444444332221 13455655443221110 0 1234566665533
Q ss_pred --CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhc-hhHHhhccCcCCchhhhcCCCCCChHHHH
Q 015826 190 --VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS-ERHVKLEDDTLDTRSYSTYLKTRPPSWEE 266 (399)
Q Consensus 190 --~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~E~ 266 (399)
+.++|+-++......+ .-.-+...++.|+..++|+++|..++... .+.+.+.+ ..+...+...-+......+.
T Consensus 152 d~ivGlKvR~s~~~~g~~---GitPl~la~~ia~~~klPlmvHigePp~~~dEvlerL~-~GDIitHcfngkpn~~l~~d 227 (386)
T COG3964 152 DVIVGLKVRVSTEDIGEY---GITPLTLALRIANDLKLPLMVHIGEPPVLMDEVLERLR-RGDIITHCFNGKPNTILTDD 227 (386)
T ss_pred CcEEEEEEEeeecccccc---CCchHHHHHHHHhhcCCceEEecCCCCccHHHHHHhcc-CCceeeeeccCCCCCccccc
Confidence 4577876654322211 22346677888999999999999776654 33333322 34555555555555556666
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCC
Q 015826 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD 313 (399)
Q Consensus 267 ~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~ 313 (399)
..+....+.|++ .|+++.+.|.... .+.+..+++-++|+
T Consensus 228 g~vr~~vrra~e-------rGV~fD~ghG~as-fsf~vAr~aia~Gl 266 (386)
T COG3964 228 GVVRAEVRRARE-------RGVIFDAGHGRAS-FSFNVARRAIANGL 266 (386)
T ss_pred hhHHHHHHHHHh-------cceEEEccCCcce-eeHHHHHHHHhcCC
Confidence 777777888875 4999999999877 88999999999987
No 61
>PRK09237 dihydroorotase; Provisional
Probab=99.83 E-value=7e-19 Score=170.99 Aligned_cols=248 Identities=18% Similarity=0.221 Sum_probs=145.5
Q ss_pred EEEEccEEEcCCCc--eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHHH
Q 015826 45 YWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122 (399)
Q Consensus 45 ~li~n~~vv~~~~~--~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~ 122 (399)
++|+|++|+|+... ..++|+|+||||++|++..+.+ .+.++||++|++|+|||||+|+|+...+ ...++ +..
T Consensus 1 ~~i~~~~v~d~~~~~~~~~~v~i~~g~I~~v~~~~~~~---~~~~~iD~~g~~v~PG~iD~H~H~~~~~-~~~~~--~~~ 74 (380)
T PRK09237 1 LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDGS---QAKKVIDLSGLYVSPGWIDLHVHVYPGS-TPYGD--EPD 74 (380)
T ss_pred CEEEeEEEECCCCCcccceEEEEECCEEEEecCCCCCC---CCCeEEECCCCEEecCEEEeeecCCCCC-CccCC--CHH
Confidence 47999999987653 4689999999999998754321 2567999999999999999999998543 22222 456
Q ss_pred HHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHH-hc--cCceeEEeeeeeeCCC-----hhhHHHHHHHHH---cCCc
Q 015826 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA-EK--RIYVDVGFWGGLVPEN-----AYNASALEALLN---AGVL 191 (399)
Q Consensus 123 ~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~-----~~~~~~l~~l~~---~G~~ 191 (399)
+.++.+||||+++++ +.. ..+.+.+....... .. ..++++.+++...+.. ....++++++++ .|+.
T Consensus 75 ~~~~~~G~Ttv~~~~-~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 151 (380)
T PRK09237 75 EVGVRSGVTTVVDAG-SAG--ADNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDELADLEDIDADAVAEAVKRNPDFIV 151 (380)
T ss_pred HHHHhCCcCEEEECC-CCC--CCCHHHHHHHHHhhhCcEEEEEEeeecccccccchhcCHhHCCHHHHHHHHHhCcCcEE
Confidence 789999999999988 332 24556665554443 21 2344555444332211 113466777765 5789
Q ss_pred EEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHH-HHHHHH
Q 015826 192 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW-EEAAIR 270 (399)
Q Consensus 192 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-E~~~v~ 270 (399)
++|.++.+...... ..+ .++.....+++.|+++.+|+++.......+.......+...|........... +...+.
T Consensus 152 glk~~~~~~v~~~~-~~~--~~~~~~~~a~~~g~~v~~H~~~~~~~~~~l~~~l~~g~~~~H~~~~~~~~~~~~~~~~~~ 228 (380)
T PRK09237 152 GIKARMSSSVVGDN-GIE--PLELAKAIAAEANLPLMVHIGNPPPSLEEILELLRPGDILTHCFNGKPNRILDEDGELRP 228 (380)
T ss_pred EEEEEEeccccccc-CCc--hHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHhhccCCCEEEecCCCCCCCccCCCCcchH
Confidence 99998865421111 113 34444555668999999999775432222222110111111111111100111 112222
Q ss_pred HHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCC
Q 015826 271 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD 313 (399)
Q Consensus 271 ~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~ 313 (399)
.+.+..+ .|..+.+.|-+.. ..++.++.+.++|+
T Consensus 229 ~a~~~l~--------~G~~~~ig~g~~~-~~~~~~~~l~~~g~ 262 (380)
T PRK09237 229 SVLEALE--------RGVRLDVGHGTAS-FSFKVAEAAIAAGI 262 (380)
T ss_pred HHHHHHH--------CCEEEEecCCCCc-ccHHHHHHHHHCCC
Confidence 3333333 2778888876643 45555566666775
No 62
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=99.83 E-value=8.4e-19 Score=174.20 Aligned_cols=181 Identities=20% Similarity=0.247 Sum_probs=109.9
Q ss_pred EEEEccEEEcCCCc----eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCC------
Q 015826 45 YWLTSKRIVTPKGV----ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE------ 114 (399)
Q Consensus 45 ~li~n~~vv~~~~~----~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~------ 114 (399)
+++.|+.|+++++. .+++|+|+||+|++|++..+.+. ++.++||++|++|||||||+|+|+.+.....
T Consensus 4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~--~~~~vID~~g~~v~PGlVn~H~H~~~~~~~g~~~~~~ 81 (451)
T PRK08203 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQ--PADEVFDARGHVVTPGLVNTHHHFYQTLTRALPAAQD 81 (451)
T ss_pred EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccCCC--CCCeEEeCCCCEEecceEeccccccchhcccccccCC
Confidence 44555789987762 47899999999999998654321 2568999999999999999999997641110
Q ss_pred ------------------cCch----HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhc---cCceeEEe--
Q 015826 115 ------------------WEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYVDVGF-- 167 (399)
Q Consensus 115 ------------------~e~~----~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-- 167 (399)
.+++ .....+++++||||++|+. ...+.. ....++...+.... +..+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~~~-~~~~~~~~~~a~~~~G~R~~~~~~~~~ 159 (451)
T PRK08203 82 AELFPWLTTLYPVWARLTPEMVRVATQTALAELLLSGCTTSSDHH-YLFPNG-LRDALDDQIEAAREIGMRFHATRGSMS 159 (451)
T ss_pred CcHHHHHHHHhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcce-eecccc-ccchHHHHHHHHHHcCCeEEEecceee
Confidence 0111 2234567899999999986 222221 11223333333321 11111110
Q ss_pred ----eeeeeC-----CChhhHHHHHHHHHcCC-----cEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 168 ----WGGLVP-----ENAYNASALEALLNAGV-----LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 168 ----~~~~~~-----~~~~~~~~l~~l~~~G~-----~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
.++..+ ...+.++..+++++.+. ..++..+++.. ...+++++++++++.|+++|+++++|+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~---~~~~~~e~l~~~~~~A~~~g~~v~~H~~ 235 (451)
T PRK08203 160 LGESDGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAMLRIALAPCS---PFSVSRELMRESAALARRLGVRLHTHLA 235 (451)
T ss_pred cCCccCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCC---CCcCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 000111 11123445555554321 34565555432 2357899999999999999999999973
No 63
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.83 E-value=3.7e-19 Score=164.25 Aligned_cols=241 Identities=22% Similarity=0.244 Sum_probs=150.8
Q ss_pred CccEEEEccEEEcCCCc--eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchH
Q 015826 42 YNQYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~--~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~ 119 (399)
.+|++|+++.|+|+.+. +..+|.|+||+|++|++...... ...++||+.|++|.|||||+|+|.+...+.+.
T Consensus 5 ~YD~ViR~g~ifDGtGnp~f~tdvgIrDGvIaav~kg~~dg~--~~~eevDaagriVaPGFIDvHtHyD~~~~~d~---- 78 (579)
T COG3653 5 TYDVVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGALDGT--GCPEEVDAAGRIVAPGFIDVHTHYDAEVLLDP---- 78 (579)
T ss_pred eeeEEEeeceEEeCCCCCccccccccccceEEEEeccccccc--CCCeeecccCcEecccEEEeeecccceeeecC----
Confidence 57999999999999884 57899999999999998754321 24479999999999999999999875432211
Q ss_pred HHHHHHHcCCeeeeecCcCCCCCCCC----------------------------cHHHHHHHHHHHhccCc-eeEEeeee
Q 015826 120 SGTKAAAAGGITTLIDMPLNSDPSTI----------------------------STETLKLKVDAAEKRIY-VDVGFWGG 170 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~-~~~~~~~~ 170 (399)
..+..+.+|||||+...|+..-... .++.+.++++....... +|++...+
T Consensus 79 -~l~psv~hGVTTVv~GNCgis~ap~n~ed~d~l~s~ve~v~~e~~~~~~~~~~~w~tf~eyleale~~plgvnv~allg 157 (579)
T COG3653 79 -GLRPSVRHGVTTVVLGNCGISTAPANSEDADDLFSRVEAVGREFVFGALRDNQTWSTFAEYLEALEALPLGVNVSALLG 157 (579)
T ss_pred -CccchhhcCeeEEEecCcccccccCChhhhhhhhhhhhhcCccccccccccccccCCHHHHHHHHHhCccCCChhhhcc
Confidence 2455678999999876543221111 23344444544443322 33332111
Q ss_pred ----------e---eCC--Chh----hHHHHHHHHHcCCcEEEE--------eecCCCCCCCCCCCHHHHHHHHHHHHhc
Q 015826 171 ----------L---VPE--NAY----NASALEALLNAGVLGLKS--------FMCPSGINDFPMTNASHIKEGLSVLARY 223 (399)
Q Consensus 171 ----------~---~~~--~~~----~~~~l~~l~~~G~~~ik~--------~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 223 (399)
. ..+ ++. +.+.+++.+++|+.+++. ...++. ...+.-+.++...++..| ++
T Consensus 158 H~aLR~avmg~~~a~~~p~TeaelaaMaallreAlEaGalGmS~~~~~~~~tgd~~p~-~~l~~~t~el~~la~~va-~a 235 (579)
T COG3653 158 HSALRTAVLGLDRATDDPPTEAELAAMAALLREALEAGALGMSMDAAIDKLTGDRYPS-RALPFATWELRRLAISVA-RA 235 (579)
T ss_pred hHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhccccccchhhhcccccccccCC-cccCcchHHHHHHHHHHH-Hh
Confidence 0 001 111 334556667789988872 111111 112223444444444444 45
Q ss_pred CC--CEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh---
Q 015826 224 KR--PLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--- 298 (399)
Q Consensus 224 g~--~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~--- 298 (399)
|. ...+|-.++.. ++.+++.++.++..+ ..++++.++|...+
T Consensus 236 g~~iLqst~d~~ega---------------------------a~L~~l~~a~ri~~R------~~~vr~v~s~~a~ag~~ 282 (579)
T COG3653 236 GGRILQSTHDRDEGA---------------------------AALEALLEASRIGNR------RKGVRMVMSHSADAGSM 282 (579)
T ss_pred cCceeEeeccccchH---------------------------HHHHHHHHHHHhcCc------ccCceEEEecccccccc
Confidence 55 44566554321 345577777777722 34899999996531
Q ss_pred -----hHHHHHHHHHHHCCCCEEEEccccccc
Q 015826 299 -----SSSLDLLMEAKTNGDSITVETCPHYLA 325 (399)
Q Consensus 299 -----~~~l~~i~~ak~~G~~vt~e~~p~~L~ 325 (399)
...+.++.+++..|.+|.++.+| |++
T Consensus 283 n~~~a~~~lgl~~kaq~~G~pVg~~~~p-~~a 313 (579)
T COG3653 283 NWGVAVFGLGLIEKAQLLGSPVGFDHYP-YTA 313 (579)
T ss_pred chhhhhhccchHHHHHHhCCcceeeecc-ccc
Confidence 26788999999999999999999 555
No 64
>PRK07583 cytosine deaminase-like protein; Validated
Probab=99.83 E-value=1.4e-18 Score=171.62 Aligned_cols=268 Identities=20% Similarity=0.236 Sum_probs=154.7
Q ss_pred ccEEEEccEEEcC------------CCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCC
Q 015826 43 NQYWLTSKRIVTP------------KGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110 (399)
Q Consensus 43 ~~~li~n~~vv~~------------~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~ 110 (399)
..++|+|+++-+. ++...++|.|+||||++|++....+ .+.++||++|++|+|||||+|+|++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~dg~i~~i~~~~~~~---~~~~~id~~g~~v~Pg~id~H~Hld~~ 87 (438)
T PRK07583 11 GRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGAP---DELPAVDLKGRMVWPCFVDMHTHLDKG 87 (438)
T ss_pred CcEEEeccccccccccCccCCCcCCCCcEEEEEEEECCEEEEEecCCCCC---CCCceecCCCCcccCCcccceeccccc
Confidence 4678899885321 1234679999999999999765322 256799999999999999999998654
Q ss_pred CCC-------------------------CcCc----hHHHHHHHHcCCeeeeecCcCCCCCC--CCcHHHHHHHHHHHhc
Q 015826 111 GRT-------------------------EWEG----FPSGTKAAAAGGITTLIDMPLNSDPS--TISTETLKLKVDAAEK 159 (399)
Q Consensus 111 ~~~-------------------------~~e~----~~~~~~~al~~GvTtv~d~~~~~~~~--~~~~~~~~~~~~~~~~ 159 (399)
... +.++ +...++.++.+|+|+++.+. +..+. ..+.+.+.+..+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~v-d~~~~~~~~~~~~i~~~~~~~~~ 166 (438)
T PRK07583 88 HIWPRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHL-DSFAPQAAISWEVFAELREAWAG 166 (438)
T ss_pred eecCCCCCCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeee-ccCCCCcccHHHHHHHHHHHhhc
Confidence 100 0122 34556788999999777665 22111 2223334343443332
Q ss_pred cC----ceeEEeeeeeeCCChhhHHHHHHHHH-c-CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 160 RI----YVDVGFWGGLVPENAYNASALEALLN-A-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 160 ~~----~~~~~~~~~~~~~~~~~~~~l~~l~~-~-G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
.. ..++.+++... ...+++.+.++ . |+.+.+.++. .-+++.+.++++.|+++|+++.+|+..
T Consensus 167 ~~~~~~v~~~p~~~~~~----~~~~eL~~~v~~~~gv~g~~~~~~--------~~~d~~l~~i~~lA~~~G~~v~vH~~E 234 (438)
T PRK07583 167 RIALQAVSLVPLDAYLT----DAGERLADLVAEAGGLLGGVTYMN--------PDLDAQLDRLFRLARERGLDLDLHVDE 234 (438)
T ss_pred cCeEEEEEecChhhccC----chHHHHHHHHHHcCCEEeCCCCCC--------CCHHHHHHHHHHHHHHhCCCcEEeECC
Confidence 21 11122222111 11245555553 3 4445443321 125689999999999999999999943
Q ss_pred -hhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh-----hHHHHHHHH
Q 015826 234 -EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLME 307 (399)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~-----~~~l~~i~~ 307 (399)
.+... ..+..+.+.+.+.+ ...++++.|.... .+.-+.++.
T Consensus 235 ~~~~~~----------------------------~~l~~~~~~~~~~G-----~~~~v~i~H~~~l~~~~~~~~~~~i~~ 281 (438)
T PRK07583 235 TGDPAS----------------------------RTLKAVAEAALRNG-----FEGKVTCGHCCSLAVQPEEQAQATIAL 281 (438)
T ss_pred CCCchH----------------------------HHHHHHHHHHHHhC-----CCCCEEEEeccchhcCCHHHHHHHHHH
Confidence 22110 11233333333321 1346889998642 122467778
Q ss_pred HHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCC
Q 015826 308 AKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (399)
Q Consensus 308 ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~ 370 (399)
.++.|+.++ +||...+..... .....|+.|... .+.+.++.|+..++|||+.
T Consensus 282 la~~gv~vv--~~P~~~~~l~~~------~~~~~p~~~~~~---~v~~l~~aGV~valGtD~~ 333 (438)
T PRK07583 282 VAEAGIAIV--SLPMCNLYLQDR------QPGRTPRWRGVT---LVHELKAAGIPVAVASDNC 333 (438)
T ss_pred HHHcCCeEE--ECcchhhhhcCC------CcCCCCCCCCcc---hHHHHHHCCCeEEEEeCCC
Confidence 888877664 566432111100 001134444433 3444556699999999995
No 65
>PRK06380 metal-dependent hydrolase; Provisional
Probab=99.82 E-value=1.6e-18 Score=170.69 Aligned_cols=176 Identities=17% Similarity=0.284 Sum_probs=107.3
Q ss_pred ccEEEEccEEEcCCC---ceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCC-----
Q 015826 43 NQYWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE----- 114 (399)
Q Consensus 43 ~~~li~n~~vv~~~~---~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~----- 114 (399)
|+++|+|++|+++++ ..+++|+|+||+|++||+... .+.++||++|++|+|||||+|+|+.+.....
T Consensus 1 m~~li~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~-----~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~rg~~~~~ 75 (418)
T PRK06380 1 MSILIKNAWIVTQNEKREILQGNVYIEGNKIVYVGDVNE-----EADYIIDATGKVVMPGLINTHAHVGMTASKGLFDDV 75 (418)
T ss_pred CeEEEEeeEEEECCCCceeeeeeEEEECCEEEEecCCCC-----CCCEEEECCCCEEccCEEeeccCCCccccCCcccCC
Confidence 357899999998753 347899999999999997532 2457999999999999999999997653211
Q ss_pred -----------------cCchH----HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeee-ee
Q 015826 115 -----------------WEGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG-LV 172 (399)
Q Consensus 115 -----------------~e~~~----~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 172 (399)
.++++ .+..+++++||||++|+... .+.+.+..+....+..+.+..... ..
T Consensus 76 ~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~d~~~~-------~~~~~~a~~~~G~r~~~~~~~~~~~~~ 148 (418)
T PRK06380 76 DLEEFLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAFVDLYYS-------EDIIAKAAEELGIRAFLSWAVLDEEIT 148 (418)
T ss_pred CHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEEEccccC-------hHHHHHHHHHhCCeEEEecccccCCcc
Confidence 01111 23456789999999988621 122222222211122121111100 00
Q ss_pred CCChhhHHHHHHHHH--cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 173 PENAYNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 173 ~~~~~~~~~l~~l~~--~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
.......+...++++ .+-..+...+.+.+ ...+++++++++++.|+++|+++++|+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~s~e~l~~~~~~A~~~g~~v~~H~~e 208 (418)
T PRK06380 149 TQKGDPLNNAENFIREHRNEELVTPSIGVQG---IYVANDETYLKAKEIAEKYDTIMHMHLSE 208 (418)
T ss_pred cccchHHHHHHHHHHHhcCCCCeEEEEECCC---CccCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 000111222233322 11122444444432 34679999999999999999999999854
No 66
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=99.82 E-value=1.2e-18 Score=172.23 Aligned_cols=274 Identities=18% Similarity=0.159 Sum_probs=147.6
Q ss_pred EEEEccEEEcCCC---c-eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCC-------
Q 015826 45 YWLTSKRIVTPKG---V-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT------- 113 (399)
Q Consensus 45 ~li~n~~vv~~~~---~-~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~------- 113 (399)
++|+|++|++.++ . .+++|+|+||+|++|++..+.....++.++||++|++|+|||||+|+|+.+....
T Consensus 1 ~li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d~~ 80 (441)
T TIGR03314 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYPEATFIDAKGKLIMPGFINTHNHFYSTFARGMMADIP 80 (441)
T ss_pred CEEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhcccCCCCeEEeCCCCEEecCeeecccchhhhhhccccccCC
Confidence 3789999996543 2 4689999999999999753222111345789999999999999999999653110
Q ss_pred ---Cc-----------------CchH----HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeee
Q 015826 114 ---EW-----------------EGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169 (399)
Q Consensus 114 ---~~-----------------e~~~----~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (399)
+. ++++ .+..+++++||||++|+...........+.+.+......-+..+.+....
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~ 160 (441)
T TIGR03314 81 PPPDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHASPNAITGSLSTIRKAADEAGLRTMLCYETSD 160 (441)
T ss_pred CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEecccccccccchHHHHHHHHHHhCCeEEEeeeeec
Confidence 00 1111 12345789999999998621110111112222222211112222222211
Q ss_pred eee-CCChhhHHHHHHHHH--cCC--cEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhhchhHHhh
Q 015826 170 GLV-PENAYNASALEALLN--AGV--LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGSERHVKL 243 (399)
Q Consensus 170 ~~~-~~~~~~~~~l~~l~~--~G~--~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~~~~~~~ 243 (399)
... ....+.+++..++++ .+. ..++..+.++. ...++++.++++.+.|+++|+++++|+ |+..+......+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~~---~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~ 237 (441)
T TIGR03314 161 RDGGKEMQEGVEENIAFIKKSSGKEPYLVEAHIGAHA---PFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHK 237 (441)
T ss_pred CCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCC---CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHH
Confidence 000 011111222223322 121 13555555542 246899999999999999999999997 554443322222
Q ss_pred ccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccc
Q 015826 244 EDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 323 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~ 323 (399)
.+ .+ .++.+ .+.+..++ .-.-.|++|++. ++++++++. | +.+..||..
T Consensus 238 ~g-------------~~-------~~~~l----~~~G~l~~-~~~~~H~~~~~~--~d~~~la~~---g--~~v~~cP~s 285 (441)
T TIGR03314 238 YG-------------KD-------IVERL----ADFGLLGS-KTLAAHCIYLSD--REIELLNET---D--TFVVHNPES 285 (441)
T ss_pred cC-------------CC-------HHHHH----HHCCCCCC-CeEEEEEecCCH--HHHHHHHHc---C--CcEEECHHH
Confidence 11 01 12222 22222221 112346666655 566666654 4 555668831
Q ss_pred cccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCC
Q 015826 324 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 372 (399)
Q Consensus 324 L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~ 372 (399)
+..-..| .|| +.+.++.|..-.+|||..+.
T Consensus 286 -----n~~l~~G-----~~p---------~~~~~~~Gv~v~LGtD~~~~ 315 (441)
T TIGR03314 286 -----NMGNAVG-----YNP---------VLRMFKNGILLGLGTDGYTS 315 (441)
T ss_pred -----HhhhccC-----CCC---------HHHHHHCCCEEEEcCCCCCc
Confidence 1100111 233 34567779999999997543
No 67
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.82 E-value=8.5e-19 Score=167.65 Aligned_cols=163 Identities=20% Similarity=0.310 Sum_probs=113.5
Q ss_pred EEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCC
Q 015826 62 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSD 141 (399)
Q Consensus 62 ~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~ 141 (399)
+|+|+||||++|++....+ .+.++||++|++|+|||||+|+|+..++....+ ..++.++.+||||++|++ +..
T Consensus 1 ~i~i~~g~I~~i~~~~~~~---~~~~~id~~g~~v~PG~iD~H~H~~~~g~~~~~---~~~~~a~~~GvTtvvd~~-~~~ 73 (338)
T cd01307 1 DVAIENGKIAAVGAALAAP---AATQIVDAGGCYVSPGWIDLHVHVYQGGTRYGD---RPDMIGVKSGVTTVVDAG-SAG 73 (338)
T ss_pred CEEEECCEEEEccCCCCCC---CCCeEEECCCCEEecCeEEeeecCCCCCcccCC---CHhHHHHcCceeEEEeCC-CCC
Confidence 5899999999999854321 246899999999999999999999988765443 377889999999999998 433
Q ss_pred CCCCcHHHHHHHH-HHHhc--cCceeEEeeeeeeCCC-h----hhHHHHHHHH---HcCCcEEEEeecCCCCCCCCCCCH
Q 015826 142 PSTISTETLKLKV-DAAEK--RIYVDVGFWGGLVPEN-A----YNASALEALL---NAGVLGLKSFMCPSGINDFPMTNA 210 (399)
Q Consensus 142 ~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~-~----~~~~~l~~l~---~~G~~~ik~~~~~~~~~~~~~~~~ 210 (399)
+ ...+.+...+ +.... ..++|+++++.+.... + ...+.+.+++ +.|+.++|.++...+... ...
T Consensus 74 ~--~~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~e~~~gi~gik~~~~~~~~~~---~~~ 148 (338)
T cd01307 74 A--DNIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDPDNIDEDAVVAAAREYPDVIVGLKARASKSVVGE---WGI 148 (338)
T ss_pred C--CCHHHHHHHHHHhhhceEEEEEeeeccccccccccCChhHCCHHHHHHHHHHCcCcEEEEEEEeecccccc---cCC
Confidence 3 4455544434 34433 3567777776543321 1 1233444443 468899999887543211 123
Q ss_pred HHHHHHHHHHHhcCCCEEEecCChhh
Q 015826 211 SHIKEGLSVLARYKRPLLVHAEMEKG 236 (399)
Q Consensus 211 ~~l~~~~~~a~~~g~~v~~H~~~~~~ 236 (399)
..++..++.++++|+++.+|+++...
T Consensus 149 ~~l~~~~~~a~~~~~pi~vH~~~~~~ 174 (338)
T cd01307 149 KPLELAKKIAKEADLPLMVHIGSPPP 174 (338)
T ss_pred cHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 34889999999999999999876543
No 68
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=99.82 E-value=4.8e-19 Score=177.25 Aligned_cols=182 Identities=16% Similarity=0.160 Sum_probs=108.0
Q ss_pred cEEEEccEEEcCCC-----ceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCC----C---
Q 015826 44 QYWLTSKRIVTPKG-----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP----G--- 111 (399)
Q Consensus 44 ~~li~n~~vv~~~~-----~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~----~--- 111 (399)
.++|+|+.|++.++ ..+++|+|+||+|++|++.... ++.++||++|++|||||||+|+|+.+. +
T Consensus 2 ~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~~----~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~~~~~ 77 (488)
T PRK06151 2 RTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFDG----EVDRVIDAGNALVGPGFIDLDALSDLDTTILGLDN 77 (488)
T ss_pred eEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCCC----CCCeEEeCCCCEEecCEEeeecccchhhhhccccc
Confidence 68999999976443 2478999999999999975321 245799999999999999999997421 0
Q ss_pred C-----C----------------CcCch----HHHHHHHHcCCeeeeecCcCCCCCC-CCcHHHHHHHHHHHhccC-cee
Q 015826 112 R-----T----------------EWEGF----PSGTKAAAAGGITTLIDMPLNSDPS-TISTETLKLKVDAAEKRI-YVD 164 (399)
Q Consensus 112 ~-----~----------------~~e~~----~~~~~~al~~GvTtv~d~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~ 164 (399)
. . +.+++ ..+..+++++||||++|+....... ......+....+.....+ ...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~a~~~~GiR~~ 157 (488)
T PRK06151 78 GPGWAKGRVWSRDYVEAGRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYRQWAETYAEFAAAAEAAGRLGLRVY 157 (488)
T ss_pred chhHHhcccCchhhhhcchhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhccccccccchHHHHHHHHHHcCCeEE
Confidence 0 0 00111 2345678999999999874111111 111112222222221111 111
Q ss_pred EEe--ee---------eeeC-----CChhhHHHH----HHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 015826 165 VGF--WG---------GLVP-----ENAYNASAL----EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK 224 (399)
Q Consensus 165 ~~~--~~---------~~~~-----~~~~~~~~l----~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g 224 (399)
++. .. ...+ ...+..++. ++....|...+|..+.+.. ...+++++|+++++.|+++|
T Consensus 158 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p~~---~~~~s~e~l~~~~~~A~~~g 234 (488)
T PRK06151 158 LGPAYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGLVRGMLAPDR---IETCTVDLLRRTAAAARELG 234 (488)
T ss_pred ecchhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCceEEEEcCCC---CCCCCHHHHHHHHHHHHHCC
Confidence 110 00 0000 001112222 3333356666777665532 23579999999999999999
Q ss_pred CCEEEecC
Q 015826 225 RPLLVHAE 232 (399)
Q Consensus 225 ~~v~~H~~ 232 (399)
+++++|+.
T Consensus 235 ~~v~~H~~ 242 (488)
T PRK06151 235 CPVRLHCA 242 (488)
T ss_pred CcEEEEEC
Confidence 99999984
No 69
>PRK12393 amidohydrolase; Provisional
Probab=99.81 E-value=4.4e-18 Score=168.96 Aligned_cols=184 Identities=21% Similarity=0.227 Sum_probs=107.1
Q ss_pred CccEEEEccE-EEcCCC----cee-eEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCC---C
Q 015826 42 YNQYWLTSKR-IVTPKG----VIS-GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG---R 112 (399)
Q Consensus 42 ~~~~li~n~~-vv~~~~----~~~-~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~---~ 112 (399)
|.+++|+|+. |++.+. ..+ ++|+|+||+|++|++.. . .++.++||++|++|+|||||+|+|+.+.. .
T Consensus 1 ~~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~-~---~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~rg~ 76 (457)
T PRK12393 1 MPSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGALT-P---LPGERVIDATDCVVYPGWVNTHHHLFQSLLKGV 76 (457)
T ss_pred CCcEEEECCeEEEecCCCccccccCceEEEECCEEEEEeccC-C---CCCCeEEeCCCCEEecCEeecccCccccccccc
Confidence 4578999996 676443 234 48999999999999832 1 13578999999999999999999997642 1
Q ss_pred C---C-----c--------------Cch----HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhc---cCce
Q 015826 113 T---E-----W--------------EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYV 163 (399)
Q Consensus 113 ~---~-----~--------------e~~----~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 163 (399)
. . | +++ +.+..+++++||||++|+.+...+ ....+......+.... +..+
T Consensus 77 ~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~-~~~~~~~~~~~~a~~~~G~R~~~ 155 (457)
T PRK12393 77 PAGINQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVELLRSGCTTVADHHYLYHP-GMPFDTGDILFDEAEALGMRFVL 155 (457)
T ss_pred ccccCCchHHHhhhCcchhhhhCCHHHHHHHHHHHHHHHHhCCccEeecchhhccc-ccccchHHHHHHHHHHcCCeEEE
Confidence 0 0 0 011 234557789999999998521111 1112222333333321 1111
Q ss_pred eEEeee-------ee----eCCC-hhhHHHHHHHHHc---CC-c-EEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 015826 164 DVGFWG-------GL----VPEN-AYNASALEALLNA---GV-L-GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP 226 (399)
Q Consensus 164 ~~~~~~-------~~----~~~~-~~~~~~l~~l~~~---G~-~-~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~ 226 (399)
.+.... .. .... .+.++..+++.+. +. . .+.+.+.+.. ....++++.++++++.|+++|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~l~~~~~~a~~~g~~ 233 (457)
T PRK12393 156 CRGGATQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRVVVAPTT--PTFSLPPELLREVARAARGMGLR 233 (457)
T ss_pred EccccccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEEEEcCCC--CCCCcCHHHHHHHHHHHHHcCCe
Confidence 111100 00 0000 1123334444321 11 1 1333344332 11367899999999999999999
Q ss_pred EEEecC
Q 015826 227 LLVHAE 232 (399)
Q Consensus 227 v~~H~~ 232 (399)
+++|+.
T Consensus 234 ~~~H~~ 239 (457)
T PRK12393 234 LHSHLS 239 (457)
T ss_pred EEEEeC
Confidence 999984
No 70
>PRK08204 hypothetical protein; Provisional
Probab=99.81 E-value=7.1e-18 Score=167.67 Aligned_cols=263 Identities=19% Similarity=0.203 Sum_probs=145.0
Q ss_pred CccEEEEccEEEcCCC----ceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCC---
Q 015826 42 YNQYWLTSKRIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE--- 114 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~----~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~--- 114 (399)
|.+++|+|++|++.++ ..+++|+|+||+|++|++..+. ++.++||++|++|+|||||+|+|+.+.....
T Consensus 1 ~~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~~----~~~~viD~~g~~v~PGlId~H~H~~~~~~~~~~~ 76 (449)
T PRK08204 1 MKRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIEA----PDAEVVDARGMIVMPGLVDTHRHTWQSVLRGIGA 76 (449)
T ss_pred CCcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCCC----CCCeEEeCCCCEEecCEEeeeeccchhhhccccC
Confidence 4578899999997554 2478999999999999986432 2457999999999999999999985431100
Q ss_pred ------c--------------Cc----hHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhc---cCceeEEe
Q 015826 115 ------W--------------EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYVDVGF 167 (399)
Q Consensus 115 ------~--------------e~----~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 167 (399)
+ ++ .......++++||||++++.. ... .........+.... +..+....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~~-~~~---~~~~~~~~~~~~~~~G~r~~~~~~~ 152 (449)
T PRK08204 77 DWTLQTYFREIHGNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWSH-INN---SPEHADAAIRGLAEAGIRAVFAHGS 152 (449)
T ss_pred CCcHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHhcCCeEEeeccc-ccC---ChhHHHHHHHHHHHcCCeEEEEccc
Confidence 0 01 112345789999999999762 111 11112222222221 11111110
Q ss_pred ee--e--eeCCChhhHHHHHHH---HHcCCcE-EEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchh
Q 015826 168 WG--G--LVPENAYNASALEAL---LNAGVLG-LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 239 (399)
Q Consensus 168 ~~--~--~~~~~~~~~~~l~~l---~~~G~~~-ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~ 239 (399)
.. . ......+..++++.+ ...+++. +...+...+ ..+++++.++++++.|+++|+++++|+......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~-- 227 (449)
T PRK08204 153 PGPSPYWPFDSVPHPREDIRRVKKRYFSSDDGLLTLGLAIRG---PEFSSWEVARADFRLARELGLPISMHQGFGPWG-- 227 (449)
T ss_pred cCCCCCCCcchhhhhHHHHHHHHHhhccCCCCceEEEEecCC---cccCCHHHHHHHHHHHHHcCCcEEEEEcCCCcc--
Confidence 00 0 000011122233333 2233332 223233321 234688999999999999999999998432110
Q ss_pred HHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEc
Q 015826 240 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~ 319 (399)
. . ...+..+.+.. ..+.++.+.|.+.. +-+.++..++.|+.++ +
T Consensus 228 --------~----------~------~~~~~~l~~~g--------~~~~~~~i~H~~~~--~~~~~~~la~~g~~v~--~ 271 (449)
T PRK08204 228 --------A----------T------PRGVEQLHDAG--------LLGPDLNLVHGNDL--SDDELKLLADSGGSFS--V 271 (449)
T ss_pred --------c----------C------CCHHHHHHHCC--------CCCCCeEEEecCCC--CHHHHHHHHHcCCCEE--E
Confidence 0 0 00122222211 12456677777653 1234555566676554 5
Q ss_pred cccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCC
Q 015826 320 CPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 372 (399)
Q Consensus 320 ~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~ 372 (399)
||.+-. . .+. -.+| +.+.++.|..-.+|||..+.
T Consensus 272 ~P~~~~-----~--~g~---~~~~---------~~~~~~~Gv~v~lGtD~~~~ 305 (449)
T PRK08204 272 TPEIEM-----M--MGH---GYPV---------TGRLLAHGVRPSLGVDVVTS 305 (449)
T ss_pred ChHHHh-----h--hcC---CCCc---------HHHHHhcCCceeeccccCCC
Confidence 674211 0 010 0233 34567789999999998654
No 71
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=99.81 E-value=8.3e-18 Score=149.26 Aligned_cols=247 Identities=20% Similarity=0.272 Sum_probs=171.1
Q ss_pred EEecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc-C-ceeEEeeeeee
Q 015826 95 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-I-YVDVGFWGGLV 172 (399)
Q Consensus 95 ~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~ 172 (399)
+-+..-.|.|+|+++.. +......-..-++...+-|| |..|+..+.+...++.++.... . .-++.+.+.+-
T Consensus 5 l~i~rPdDwHlHLRdg~------mL~~V~p~ts~~f~rAiIMP-NL~pPvtt~~~a~aYr~rIl~a~p~~~~F~PLMtlY 77 (344)
T COG0418 5 LTIRRPDDWHLHLRDGA------MLKAVVPYTSRGFGRAIIMP-NLVPPVTTVADALAYRERILKAVPAGHRFTPLMTLY 77 (344)
T ss_pred eeccCccceeEEecCcc------HHHHhhhhhhhhcceEEEcC-CCCCCcccHHHHHHHHHHHHHhCcCCCCCceeEEEE
Confidence 34567789999998752 22222222234888899999 7777776655555544443211 1 11222322221
Q ss_pred CCChhhHHHHHHHHHcC-CcEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCc
Q 015826 173 PENAYNASALEALLNAG-VLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 250 (399)
Q Consensus 173 ~~~~~~~~~l~~l~~~G-~~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 250 (399)
-.+....+++++..+.| +.++|.|...-.. ......+-+.+..+++.+++.|+++.+|-|-.+. +.|.
T Consensus 78 Ltd~~~peel~~a~~~g~i~a~KlYPaGaTTNS~~GV~~~~~~~pvle~Mq~~gmpLlvHGEvt~~----------~vDi 147 (344)
T COG0418 78 LTDSTTPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDA----------EVDI 147 (344)
T ss_pred ecCCCCHHHHHHHHhcCcEEEEEeccCCccccCcCCcCcHHHHHHHHHHHHHcCCeEEEecccCCc----------cccc
Confidence 12223467899998888 6688987543211 1123456788999999999999999999876543 1121
Q ss_pred hhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEcccccccccccc
Q 015826 251 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 330 (399)
Q Consensus 251 ~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~ 330 (399)
.+ .|..-+..+++-.++. ++..++.+.|++++ ++++.|+.+ +-++.+.++||||.++.++
T Consensus 148 fd-----------rE~~Fi~~vl~pl~~~-----fP~LKIV~EHiTT~-dav~~v~~~---~~nlaATIT~hHL~~nrnd 207 (344)
T COG0418 148 FD-----------REAAFIESVLEPLRQR-----FPKLKIVLEHITTK-DAVEYVKDA---NNNLAATITPHHLLLNRND 207 (344)
T ss_pred hh-----------hHHHHHHHHHHHHHhh-----CCcceEEEEEeccH-HHHHHHHhc---CcceeeEeehhheeeehhh
Confidence 11 2333445444433332 57899999999998 888888776 4459999999999999988
Q ss_pred CCCCC--cceEEcCCCCChhhHHHHHHHHhcCCcc-EEeCCCCCCCccccc
Q 015826 331 IPDGD--TRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKL 378 (399)
Q Consensus 331 ~~~~~--~~~~~~Pplr~~~~~~~l~~~l~~G~id-~i~sdh~p~~~~~k~ 378 (399)
+.-+| +.+.|.|-++..++|++|.++..+|..- ++|||.+||....|+
T Consensus 208 ~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSAPH~~~~Ke 258 (344)
T COG0418 208 MLVGGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDSAPHARSRKE 258 (344)
T ss_pred hhcCCCCcceeeeccccchhhHHHHHHHHhcCCCcEEecCCCCCCcccccc
Confidence 76555 8899999999999999999999999887 889999999988886
No 72
>PRK09356 imidazolonepropionase; Validated
Probab=99.80 E-value=4.4e-18 Score=167.00 Aligned_cols=184 Identities=23% Similarity=0.301 Sum_probs=106.7
Q ss_pred CccEEEEccEEEcCCC-------c-eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCC
Q 015826 42 YNQYWLTSKRIVTPKG-------V-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT 113 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~-------~-~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~ 113 (399)
|++++|+|++|+++++ . .+++|+|+||||++|++..+.+. ..+.++||++|++|||||||+|+|+...+..
T Consensus 2 ~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~-~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~ 80 (406)
T PRK09356 2 MADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPA-AYAAEVIDAGGKLVTPGLIDCHTHLVFGGNR 80 (406)
T ss_pred CceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCcccccc-ccCceEEECCCCEEeeceEecCCCcccCCCc
Confidence 5789999999998753 2 37899999999999998643321 1235899999999999999999999764221
Q ss_pred C-----------c----------------------Cch----HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHH
Q 015826 114 E-----------W----------------------EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 156 (399)
Q Consensus 114 ~-----------~----------------------e~~----~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~ 156 (399)
. + +++ ......++++||||+.++.....+.....+.++.. +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~-~~ 159 (406)
T PRK09356 81 ANEFELRLQGVSYEEIAAQGGGILSTVRATRAASEEELFAQALPRLDALLAEGVTTVEIKSGYGLDLETELKMLRVA-RR 159 (406)
T ss_pred HHHHHHHHCCCcHHHHHHhcCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCHHHHHHHHHHH-HH
Confidence 0 0 011 12234668999999998641101100111122221 12
Q ss_pred HhccCceeEEe--ee--eeeC---CC-hhhHHHH-HHHH----H-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh
Q 015826 157 AEKRIYVDVGF--WG--GLVP---EN-AYNASAL-EALL----N-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR 222 (399)
Q Consensus 157 ~~~~~~~~~~~--~~--~~~~---~~-~~~~~~l-~~l~----~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 222 (399)
...+..+.+.. .+ ++.. .. ....+.+ ++++ . .++..++.+... ..+++++++++++.|++
T Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~l~~~~~~A~~ 233 (406)
T PRK09356 160 LGEEHPVDVVTTFLGAHAVPPEYKGRPDAYIDLVCEEMLPAVAEEGLADAVDVFCET------GAFSVEQSERVLEAAKA 233 (406)
T ss_pred HhhhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHhHHHHhcCCcceEEEEecC------CCCCHHHHHHHHHHHHH
Confidence 11111111111 10 0010 01 1111111 1122 1 245566543222 24688999999999999
Q ss_pred cCCCEEEecCC
Q 015826 223 YKRPLLVHAEM 233 (399)
Q Consensus 223 ~g~~v~~H~~~ 233 (399)
+|+++.+|+..
T Consensus 234 ~g~~v~~H~~~ 244 (406)
T PRK09356 234 LGLPVKIHAEQ 244 (406)
T ss_pred CCCCEEEEEec
Confidence 99999999853
No 73
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=99.80 E-value=9.1e-18 Score=165.36 Aligned_cols=176 Identities=16% Similarity=0.170 Sum_probs=106.3
Q ss_pred ccEEEEccEEEcCCCc--eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCC---C----
Q 015826 43 NQYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR---T---- 113 (399)
Q Consensus 43 ~~~li~n~~vv~~~~~--~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~---~---- 113 (399)
++++|+|++|+++++. .+++|+|+||+|++|++.... ++.++||++|++|+|||||+|+|+.+... .
T Consensus 1 ~~~~i~~~~i~~~~~~~~~~~~i~i~~g~I~~v~~~~~~----~~~~~id~~~~~v~Pg~vd~H~H~~~~~~rg~~~~~~ 76 (424)
T PRK08393 1 MSILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNINK----PADTVIDASGSVVSPGFINAHTHSPMVLLRGLADDVP 76 (424)
T ss_pred CeEEEECcEEEeCCCCceecceEEEECCEEEEecCCCCC----CCCeEEeCCCCEEccCeeeeccCcchHhhhhccCCCC
Confidence 3689999999998773 468999999999999875322 24579999999999999999999864311 0
Q ss_pred ----------------CcCch----HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeC
Q 015826 114 ----------------EWEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP 173 (399)
Q Consensus 114 ----------------~~e~~----~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (399)
+.+++ .....+++++||||++|+.. ..+.+.+......-+..+.++......+
T Consensus 77 l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~-------~~~~~~~a~~~~G~r~~~~~~~~~~~~~ 149 (424)
T PRK08393 77 LMEWLQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMYF-------HMEEVAKATLEVGLRGYLSYGMVDLGDE 149 (424)
T ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEEecccc-------CHHHHHHHHHHhCCeEEEeceEecCCCc
Confidence 00122 23456778999999998862 1222222222211122222211110011
Q ss_pred CC-hhhHHHHHHHHH----cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 174 EN-AYNASALEALLN----AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 174 ~~-~~~~~~l~~l~~----~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
.. .+.+++..++++ .+...+...+.++. ...+++++++++++.|+++|+++++|+.
T Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~---~~~~s~~~l~~~~~~A~~~g~~v~~H~~ 210 (424)
T PRK08393 150 EKREKEIKETEKLMEFIEKLNSPRVHFVFGPHA---PYTCSLALLKWVREKAREWNKLITIHLS 210 (424)
T ss_pred cchHHHHHHHHHHHHHHhcCCCCceEEEEeCCc---CCcCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 11 111222222221 12222333333321 2357899999999999999999999974
No 74
>PRK07572 cytosine deaminase; Validated
Probab=99.80 E-value=2.9e-17 Score=161.86 Aligned_cols=271 Identities=16% Similarity=0.172 Sum_probs=154.9
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCC---CCC-----
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT----- 113 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~~----- 113 (399)
|++++|+|++++++. ...+|.|+||+|++|++..+. ...++||++|++|+|||||+|+|+... +..
T Consensus 1 ~~~~~i~~~~i~~~~--~~~~i~i~~g~I~~v~~~~~~----~~~~~id~~g~~~~PG~id~h~h~~~~~~~~~~~~~~~ 74 (426)
T PRK07572 1 MFDLIVRNANLPDGR--TGIDIGIAGGRIAAVEPGLQA----EAAEEIDAAGRLVSPPFVDPHFHMDATLSYGLPRVNAS 74 (426)
T ss_pred CCcEEEECeEECCCC--eeEEEEEECCEEEEecCCCCC----CcCceEeCCCCEEcccceehhhCcchhhccCCCCCCCC
Confidence 356889999999865 357899999999999875322 245799999999999999999999653 111
Q ss_pred -----------------CcCch----HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeee
Q 015826 114 -----------------EWEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 172 (399)
Q Consensus 114 -----------------~~e~~----~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (399)
+.+++ ....+.++++|||+++++.....+.......+.+..+... ..++..... +.
T Consensus 75 g~l~e~l~~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~~~~~~~~~a~~~~~~~~~--~~~~~~~~a-~~ 151 (426)
T PRK07572 75 GTLLEGIALWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVCDPRLLAVEALLEVRERVA--PYLDLQLVA-FP 151 (426)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccCCCcccHHHHHHHHHHHhh--ccceEEEEe-cc
Confidence 11222 2345678999999999986211222112222222222211 222322111 11
Q ss_pred C----CChhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhhchhHHhhccCc
Q 015826 173 P----ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGSERHVKLEDDT 247 (399)
Q Consensus 173 ~----~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~~~~~~~~~~~ 247 (399)
. ......+.++++++.|++.+... ++. ......+.++++.++++|+++|+++.+|+ +..+...
T Consensus 152 ~~g~~~~~~~~~~~~~~l~~g~d~iGg~--p~~-~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~--------- 219 (426)
T PRK07572 152 QDGVLRSPGAVDNLERALDMGVDVVGGI--PHF-ERTMADGAESVRLLCEIAAERGLRVDMHCDESDDPLS--------- 219 (426)
T ss_pred ChhhccCccHHHHHHHHHHcCCCEEeCC--CCC-ccccchHHHHHHHHHHHHHHcCCCeEEEECCCCChhH---------
Confidence 0 11224567788888888766321 110 01111224899999999999999999998 4333211
Q ss_pred CCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh-----hHHHHHHHHHHHCCCCEEEEcccc
Q 015826 248 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPH 322 (399)
Q Consensus 248 ~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~-----~~~l~~i~~ak~~G~~vt~e~~p~ 322 (399)
.++.+......+.++ .+ ++.+.|.... ..+-+.++..+++|+.++ .||.
T Consensus 220 -------------------~~~~~~~~~~~~~G~----~~-~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv--~~P~ 273 (426)
T PRK07572 220 -------------------RHIETLAAETQRLGL----QG-RVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAI--ANPL 273 (426)
T ss_pred -------------------HHHHHHHHHHHHhCC----CC-CEEEEccchhhcCCHHHHHHHHHHHHHcCCeEE--ECch
Confidence 122222333333321 13 6778887532 133456666677776554 4563
Q ss_pred c-cccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCC
Q 015826 323 Y-LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (399)
Q Consensus 323 ~-L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~ 370 (399)
. +.+. + .....|.-+ ....+.+.++.|.-.++|||..
T Consensus 274 ~n~~l~-------~-~~~~~~~~~---g~~~v~~l~~~GV~v~lGtD~~ 311 (426)
T PRK07572 274 INITLQ-------G-RHDTYPKRR---GMTRVPELMAAGINVAFGHDCV 311 (426)
T ss_pred hhhhhc-------C-CCCCCCCCC---CCcCHHHHHHCCCcEEEecCCC
Confidence 2 1111 0 000012111 2234677788899999999984
No 75
>PRK07213 chlorohydrolase; Provisional
Probab=99.79 E-value=1e-17 Score=162.35 Aligned_cols=167 Identities=19% Similarity=0.216 Sum_probs=101.2
Q ss_pred EEEEccEEEcCCC--ceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCC---------
Q 015826 45 YWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT--------- 113 (399)
Q Consensus 45 ~li~n~~vv~~~~--~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~--------- 113 (399)
++|+|++|+++.. ..+++|+|+||+|++|++.. ++.++||++|++| |||||+|+|+.+....
T Consensus 2 ~li~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~------~~~~~id~~g~~v-PGlvd~H~H~~~~~~rg~~~~~~l~ 74 (375)
T PRK07213 2 LVYLNGNFLYGEDFEPKKGNLVIEDGIIKGFTNEV------HEGNVIDAKGLVI-PPLINAHTHIGDSSIKDIGIGKSLD 74 (375)
T ss_pred EEEEeeEEEeCCCCceeeeEEEEECCEEEEeccCC------CCCeEEeCCCCEe-cceeeeccccCchhhhcCCCCCCHH
Confidence 5799999999765 35789999999999998641 2457999999999 9999999999764110
Q ss_pred C-----------------cCch----HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeee-
Q 015826 114 E-----------------WEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL- 171 (399)
Q Consensus 114 ~-----------------~e~~----~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 171 (399)
. .+++ ...+.+++++||||++|+. .. . ...+....+...... +...+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~-~~--~---~~~~~~~~~a~~~~~-~r~~~~~~~~ 147 (375)
T PRK07213 75 ELVKPPNGLKHKFLNSCSDKELVEGMKEGLYDMYNNGIKAFCDFR-EG--G---IKGINLLKKASSDLP-IKPIILGRPT 147 (375)
T ss_pred HHccCCCcchHHHHhcCCHHHHHHHHHHHHHHHHHcCCeEEEEhh-hc--C---hhHHHHHHHHHHcCC-CceEEecCCC
Confidence 0 0111 2335667899999999974 11 1 111222222222111 111111100
Q ss_pred eCCChhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 172 VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 172 ~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
........+.+++.++. ..++. .+ ....++.++++++++.|+++|+++++|+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~-~~g~~----~~---~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e 201 (375)
T PRK07213 148 EADENELKKEIREILKN-SDGIG----LS---GANEYSDEELKFICKECKREKKIFSIHAAE 201 (375)
T ss_pred cccchhhHHHHHHHHHh-ccccc----cc---ccccCCHHHHHHHHHHHHHcCCEEEEeeCC
Confidence 00111223334443331 22221 11 123568899999999999999999999843
No 76
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=99.78 E-value=3.8e-17 Score=160.09 Aligned_cols=171 Identities=17% Similarity=0.181 Sum_probs=98.5
Q ss_pred eeeEEEEECCEEEEeccCCCCCCC-CCCCcEEeCCCCEEecceeecccccCCCCCC--------C---------------
Q 015826 59 ISGAVEIKEGNIISIVSEEDWPRN-SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT--------E--------------- 114 (399)
Q Consensus 59 ~~~~V~I~dG~I~~Ig~~~~~~~~-~~~~~vID~~G~~vlPGlID~H~H~~~~~~~--------~--------------- 114 (399)
.+++|+|+||||++||+..+.... +++.++||++|++|||||||+|+|+.+.... .
T Consensus 5 ~~~~V~V~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~~v~PGlId~H~Hl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (401)
T TIGR02967 5 EDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIASYGEQLLEWLEKYTFPTEARFAD 84 (401)
T ss_pred eceEEEEECCEEEEecCcchhhhccCCCCeEEeCCCCEEecceeecccCchhhhhcccCCchHHHHHhhCcCccccccCC
Confidence 368999999999999986432111 1245799999999999999999998643110 0
Q ss_pred cCch----HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeee-e----eCCChhhHHHHHHH
Q 015826 115 WEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG-L----VPENAYNASALEAL 185 (399)
Q Consensus 115 ~e~~----~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~l~~l 185 (399)
.+.. .....+++++||||++|+. ...+ .....+.+..+....+.......... . .....+..+..+++
T Consensus 85 ~~~~~~~a~~~~~e~l~~GvTtv~d~~-~~~~--~~~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 161 (401)
T TIGR02967 85 PDHAEEVAEFFLDELLRNGTTTALVFA-TVHP--ESVDALFEAALKRGMRMIAGKVLMDRNAPDYLRDTAESSYDESKAL 161 (401)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecc-ccCH--HHHHHHHHHHHHCCCeEEEeeeeecCCCCcccccCHHHHHHHHHHH
Confidence 0011 1224578999999999986 2221 11122222222111111111111100 0 01111223344444
Q ss_pred HH--cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-CCCEEEecC-Chh
Q 015826 186 LN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAE-MEK 235 (399)
Q Consensus 186 ~~--~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~-~~~ 235 (399)
++ .+...++..+.++. .+.+++++|+++++.|+++ |+++++|+. +..
T Consensus 162 i~~~~~~g~i~~~~~~~~---~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~ 212 (401)
T TIGR02967 162 IERWHGKGRLLYAVTPRF---APTSSPEQLAAAGELAKEYPDVYVQTHLSENKD 212 (401)
T ss_pred HHHHhCcCCceEEEECCc---CCcCcHHHHHHHHHHHHhCCCCeeEEEECCCch
Confidence 43 22223555555532 2367899999999999999 999999974 443
No 77
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.78 E-value=1.6e-18 Score=166.36 Aligned_cols=142 Identities=22% Similarity=0.163 Sum_probs=92.9
Q ss_pred cEEeCCCCEEecceeecccccCCCCCCCc------C-----chHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHH
Q 015826 87 QVVDYGEAVIMPGLIDVHAHLDDPGRTEW------E-----GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 155 (399)
Q Consensus 87 ~vID~~G~~vlPGlID~H~H~~~~~~~~~------e-----~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~ 155 (399)
++||++|++|||||||+|+|+........ . .....++.++++|||||+|+. +..+. . ++..++
T Consensus 2 ~vID~~g~~v~PGliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g-~~~~~----~-~~~~~~ 75 (342)
T cd01299 2 QVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAG-GADYG----L-LRDAID 75 (342)
T ss_pred cEEeCCCCEECCCeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCC-CcchH----H-HHHHHH
Confidence 68999999999999999999876432111 1 112467889999999999997 22111 1 222222
Q ss_pred HHh---------------ccCceeEEe---------eeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCCC-----CCCC
Q 015826 156 AAE---------------KRIYVDVGF---------WGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI-----NDFP 206 (399)
Q Consensus 156 ~~~---------------~~~~~~~~~---------~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~-----~~~~ 206 (399)
... ...+.++.. +.....+..+.+++++++++.|++.||+|+.+... .+.+
T Consensus 76 ~g~~~gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~ 155 (342)
T cd01299 76 AGLIPGPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDT 155 (342)
T ss_pred cCCccCCceeecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCccc
Confidence 111 011112110 11112233445778899999999999999864211 1113
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEecCCh
Q 015826 207 MTNASHIKEGLSVLARYKRPLLVHAEME 234 (399)
Q Consensus 207 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 234 (399)
.++.++++++++.|+++|+++.+|+.+.
T Consensus 156 ~~~~e~l~~~~~~A~~~g~~v~~H~~~~ 183 (342)
T cd01299 156 QFSEEELRAIVDEAHKAGLYVAAHAYGA 183 (342)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 5789999999999999999999999653
No 78
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=99.77 E-value=4.7e-17 Score=160.52 Aligned_cols=180 Identities=16% Similarity=0.171 Sum_probs=107.7
Q ss_pred CccEEEEccEEEcCCC--ceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCC------
Q 015826 42 YNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT------ 113 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~--~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~------ 113 (399)
|++++|+|++|+++++ ..+++|+|+||+|++|++.... ++.++||++|++|+|||||+|+|+....+.
T Consensus 1 ~~~~~~~~~~i~~~~~~~~~~~~v~v~~g~I~~i~~~~~~----~~~~~id~~g~~v~PG~vd~H~H~~~~~~~g~~~~~ 76 (430)
T PRK06038 1 MADIIIKNAYVLTMDAGDLKKGSVVIEDGTITEVSESTPG----DADTVIDAKGSVVMPGLVNTHTHAAMTLFRGYADDL 76 (430)
T ss_pred CCCEEEEccEEEECCCCeeeccEEEEECCEEEEecCCCCC----CCCEEEeCCCCEEecCeeecccCcchhhhhhccCCC
Confidence 3468999999997654 3468999999999999985322 245799999999999999999999754110
Q ss_pred -----------------CcCch----HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeee
Q 015826 114 -----------------EWEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 172 (399)
Q Consensus 114 -----------------~~e~~----~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (399)
+.++. .....+++++||||++|+.. . ...+.+..+...-+....++......
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~--~-----~~~~~~a~~~~GiR~~~~~~~~d~~~ 149 (430)
T PRK06038 77 PLAEWLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMYF--Y-----MDEVAKAVEESGLRAALSYGMIDLGD 149 (430)
T ss_pred CHHHHHHhhhhhchhcCCHHHHHHHHHHHHHHHHhcCceeEEcccc--C-----HHHHHHHHHHhCCeEEEEchhccCCC
Confidence 00111 12345678999999998862 1 11111111111111111111000000
Q ss_pred CC-ChhhHHHHHHHHH--cC--CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015826 173 PE-NAYNASALEALLN--AG--VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (399)
Q Consensus 173 ~~-~~~~~~~l~~l~~--~G--~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 235 (399)
.. ..+.+++..++++ .+ ...++..+.+.. ...+++++++++++.|+++|+++++|+....
T Consensus 150 ~~~~~~~l~~~~~~i~~~~~~~~g~v~~~~~~~~---~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~ 214 (430)
T PRK06038 150 DEKGEAELKEGKRFVKEWHGAADGRIKVMYGPHA---PYTCSEEFLSKVKKLANKDGVGIHIHVLETE 214 (430)
T ss_pred ccchHHHHHHHHHHHHHhcCCCCCceEEEEeCCc---CccCCHHHHHHHHHHHHHcCCcEEEEcCCCH
Confidence 00 1112333333332 11 123444444432 2367899999999999999999999985443
No 79
>PRK09230 cytosine deaminase; Provisional
Probab=99.77 E-value=2.9e-16 Score=154.36 Aligned_cols=271 Identities=19% Similarity=0.258 Sum_probs=151.8
Q ss_pred ccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCC---CCC---C--
Q 015826 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT---E-- 114 (399)
Q Consensus 43 ~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~~---~-- 114 (399)
..++|+|++++++.. ..+|.|+||+|++|++..+.. .++.++||++|++|||||||+|+|+... +.. .
T Consensus 4 ~~~li~~~~~~~~~~--~~~i~i~~g~I~~i~~~~~~~--~~~~~~id~~g~~v~PGlid~H~H~~~~~~~~~~~~~~~~ 79 (426)
T PRK09230 4 ALMTIKNARLPGKEG--LWQITIEDGKISAIEPQSEAS--LEAGEVLDAEGGLAIPPFIEPHIHLDTTQTAGEPNWNQSG 79 (426)
T ss_pred ceEEEECcEEcCCCe--eEEEEEECCEEEEecCCCCCC--CCCCceEeCCCCEeccceeEEEEccccceecCCCccCCCC
Confidence 478999999988543 468999999999999864321 1256799999999999999999999764 111 0
Q ss_pred -----------------cCch----HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeee-
Q 015826 115 -----------------WEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV- 172 (399)
Q Consensus 115 -----------------~e~~----~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 172 (399)
.+++ .....+++++|||+++++.....+.....+.+.+..+..+. ..+++......
T Consensus 80 ~l~~~i~~~~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~~~~~~~a~~~~~~~~~~--~~~~~i~a~~~~ 157 (426)
T PRK09230 80 TLFEGIERWAERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDPTLTALKAMLEVKEEVAP--WVDLQIVAFPQE 157 (426)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCcchhHHHHHHHHHHHhhC--cceEEEEeccCc
Confidence 0111 23356678999999999873111111112222222222222 22333211100
Q ss_pred --CCChhhHHHHHHHHHcCCcEEEEeecCCCCCCCCC---CCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCc
Q 015826 173 --PENAYNASALEALLNAGVLGLKSFMCPSGINDFPM---TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT 247 (399)
Q Consensus 173 --~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~---~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~ 247 (399)
-+.+...+.+++..+.+...+.. .+ ..+. .+.+.++.+++.|+++|+++++|+.......
T Consensus 158 ~~~~~~~~~~~l~~a~~~~~~~vg~--~p----~~~~~~~~~~e~l~~~~~~A~~~g~~~~~H~~E~~~~~--------- 222 (426)
T PRK09230 158 GILSYPNGEALLEEALRLGADVVGA--IP----HFEFTREYGVESLHKAFALAQKYDRLIDVHCDEIDDEQ--------- 222 (426)
T ss_pred cccCCccHHHHHHHHHHcCCCEEeC--CC----CccccchhHHHHHHHHHHHHHHhCCCcEEEECCCCCcc---------
Confidence 01122334556666655543321 11 1111 2578999999999999999999985322100
Q ss_pred CCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh-----hHHHHHHHHHHHCCCCEEEEcccc
Q 015826 248 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPH 322 (399)
Q Consensus 248 ~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~-----~~~l~~i~~ak~~G~~vt~e~~p~ 322 (399)
.....+.+++.++.+ .+.++.+.|.... .+.-+.++..++.|+. +.+||.
T Consensus 223 ------------------~~~~~~~~~~~~~~g-----l~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~--vv~cP~ 277 (426)
T PRK09230 223 ------------------SRFVETVAALAHREG-----MGARVTASHTTAMHSYNGAYTSRLFRLLKMSGIN--FVANPL 277 (426)
T ss_pred ------------------hHHHHHHHHHHHHhC-----CCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCe--EEECcc
Confidence 001223344444432 1446777776543 0134566666767654 456774
Q ss_pred c-cccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCC
Q 015826 323 Y-LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (399)
Q Consensus 323 ~-L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~ 370 (399)
. +.+. . ...-.| .+. ....+.+.++.|.--++|||..
T Consensus 278 sn~~l~-~-------~~~~~p-~~~--g~~pi~~l~~aGv~V~lGTD~~ 315 (426)
T PRK09230 278 VNIHLQ-G-------RFDTYP-KRR--GITRVKEMLEAGINVCFGHDDV 315 (426)
T ss_pred hhhhhc-C-------CCCCCC-CCC--CCcCHHHHHHCCCeEEEecCCC
Confidence 2 1111 0 000011 111 1112556677899999999973
No 80
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.77 E-value=7.6e-17 Score=155.88 Aligned_cols=179 Identities=18% Similarity=0.245 Sum_probs=111.4
Q ss_pred ccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCC-CEEecceeecccccCCCCCCCcCchHHH
Q 015826 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGE-AVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (399)
Q Consensus 43 ~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G-~~vlPGlID~H~H~~~~~~~~~e~~~~~ 121 (399)
++++|+|++|+++. ..+|.|+||||++|++.... ++.++||++| ++|+|||||+|+|+..++....++..
T Consensus 1 ~~~~i~n~~i~~~~---~~~v~i~~g~I~~v~~~~~~----~~~~~iD~~g~~~l~PG~ID~H~H~~~~~~~~~~~~~-- 71 (365)
T TIGR03583 1 YDLLIKNGRTVNGT---PVDIAIEDGKIAAVGTTITG----SAKQTIDLEGETYVSAGWIDDHTHCFPKSALYYDEPD-- 71 (365)
T ss_pred CcEEEECcEEecCC---eeEEEEECCEEEEecCCCCC----CCCeEEECCCCeEEecCEEEeeeccCCCcccccCCHh--
Confidence 46899999999853 45899999999999864322 2457999999 99999999999999865443333332
Q ss_pred HHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC--ceeEEeeeeeeCCC-----hhhHHHHHHHHH---cCCc
Q 015826 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLVPEN-----AYNASALEALLN---AGVL 191 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~l~~l~~---~G~~ 191 (399)
..++++||||+++++ .+.+ .+.+.+.+..+....+. .+++..++...... ....++++++.+ .++.
T Consensus 72 -~~a~~~GvTt~~~~~-~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~vv 147 (365)
T TIGR03583 72 -EIGVKTGVTTVVDAG-STGA--DDIDDFYRLAQQAKTNVFALLNISRIGLVAQDELADLSNLDASAVKQAVERYPDFIV 147 (365)
T ss_pred -HhhhcCceeEEEeCC-CCCC--CCHHHHHHHHHhhCCcEEEEeeehhccccChhhhhChHHhHHHHHHHHHHhCcCcEE
Confidence 446899999999987 3222 34444544444332221 12222222211111 113455555554 2466
Q ss_pred EEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhh
Q 015826 192 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 236 (399)
Q Consensus 192 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 236 (399)
+||.+++....+.. ..++..+.+.+..+ ++|+++.+|+++...
T Consensus 148 ~~~~~~t~~~i~E~-gl~~~~~~~~l~~~-~~~~pv~vH~~~a~~ 190 (365)
T TIGR03583 148 GLKARMSKSVVGDN-GIEPLEIAKQIQQE-NLELPLMVHIGSAPP 190 (365)
T ss_pred EEEEeecccccccC-CcCHHHHHHHHHHh-cCCCcEEEEeCCCcc
Confidence 78888774322211 22355555555544 789999999977653
No 81
>PRK09228 guanine deaminase; Provisional
Probab=99.77 E-value=5.1e-17 Score=160.17 Aligned_cols=169 Identities=17% Similarity=0.182 Sum_probs=97.1
Q ss_pred eeeEEEEECCEEEEeccCCCCCCCCC-CCcEEeCCCCEEecceeecccccCCCCCCC-----------------------
Q 015826 59 ISGAVEIKEGNIISIVSEEDWPRNSK-TGQVVDYGEAVIMPGLIDVHAHLDDPGRTE----------------------- 114 (399)
Q Consensus 59 ~~~~V~I~dG~I~~Ig~~~~~~~~~~-~~~vID~~G~~vlPGlID~H~H~~~~~~~~----------------------- 114 (399)
.+++|+|+||+|++||+..+.....+ +.++||++|++|+|||||+|+|+.+.....
T Consensus 30 ~~g~I~I~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~lv~PGlVn~H~H~~~~~~~g~~~~~l~~wl~~~~~~~e~~~~~ 109 (433)
T PRK09228 30 EDGLLLVEDGRIVAAGPYAELRAQLPADAEVTDYRGKLILPGFIDTHIHYPQTDMIASYGEQLLDWLNTYTFPEERRFAD 109 (433)
T ss_pred CCeEEEEECCEEEEEcChHHhhhhcCCCCeEEeCCCCEEecceecccccccchhhccCCchHHHHHHHhhhhHHHHHhCC
Confidence 37899999999999998643221112 258999999999999999999986542110
Q ss_pred cCchH----HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHh---ccCceeEEeeeeeeC-----CChhhHHHH
Q 015826 115 WEGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE---KRIYVDVGFWGGLVP-----ENAYNASAL 182 (399)
Q Consensus 115 ~e~~~----~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~l 182 (399)
.+..+ ....+++++||||++|+. ... ........+... -+..+.+.......+ ...+..++.
T Consensus 110 ~~~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~-----~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (433)
T PRK09228 110 PAYAREVAEFFLDELLRNGTTTALVFG-TVH-----PQSVDALFEAAEARNMRMIAGKVLMDRNAPDGLRDTAESGYDDS 183 (433)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEEecc-ccC-----HHHHHHHHHHHHHcCCeEEeeeeeecCCCCcccccCHHHHHHHH
Confidence 01111 124467999999999875 211 122222222222 122221111110001 111122233
Q ss_pred HHHHH--cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-CCCEEEec-CChhh
Q 015826 183 EALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHA-EMEKG 236 (399)
Q Consensus 183 ~~l~~--~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~-~~~~~ 236 (399)
.++++ .+...++..++++. .+.++++.++++.+.|+++ |+++++|+ |+...
T Consensus 184 ~~~~~~~~~~~~~~~~~~p~~---~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e 238 (433)
T PRK09228 184 KALIERWHGKGRLLYAITPRF---APTSTPEQLEAAGALAREHPDVWIQTHLSENLDE 238 (433)
T ss_pred HHHHHHHhCCCCceEEEECCc---CCcCCHHHHHHHHHHHHHCCCCceEEeecCChhH
Confidence 33332 12123444444432 2367899999999999998 99999997 44443
No 82
>PRK08418 chlorohydrolase; Provisional
Probab=99.76 E-value=3.3e-17 Score=160.19 Aligned_cols=181 Identities=14% Similarity=0.152 Sum_probs=104.9
Q ss_pred EEEEccEEEcCCC---c-eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCC-------
Q 015826 45 YWLTSKRIVTPKG---V-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT------- 113 (399)
Q Consensus 45 ~li~n~~vv~~~~---~-~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~------- 113 (399)
.+|+|++|+++++ . .+++|+|+ |+|++|++..+.....++.++||++|++|+|||||+|+|+.+....
T Consensus 2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~~~~~~~~vid~~g~~v~PG~Vn~H~H~~~~~~rg~~~~~~ 80 (408)
T PRK08418 2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLKKKYPNAKIQFFKNSVLLPAFINPHTHLEFSANKTTLDYGD 80 (408)
T ss_pred EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHHhhCCCCcEEecCCcEEccCccccccchhhhhhccccCCCc
Confidence 4689999998763 2 47899999 9999999753221111244689999999999999999999643211
Q ss_pred --Cc-------------Cch----HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCC
Q 015826 114 --EW-------------EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 174 (399)
Q Consensus 114 --~~-------------e~~----~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
.| +.. ..+..+++++||||+.|+. .. . ..++...+.. -+..+..... +....
T Consensus 81 ~~~wl~~~~~~~~~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~-~~-~-----~~~~a~~~~G-iR~~~~~~~~-~~~~~ 151 (408)
T PRK08418 81 FIPWLGSVINHREDLLEKCKGALIQQAINEMLKSGVGTIGAIS-SF-G-----IDLEICAKSP-LRVVFFNEIL-GSNAS 151 (408)
T ss_pred hHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHhcCceEEEEee-cc-h-----hhHHHHHhcC-CeEEEEeeee-CCCcc
Confidence 01 011 1234577999999999886 21 1 1112111111 1111111111 11110
Q ss_pred C-hhhHHH-HHHHHH---cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhhch
Q 015826 175 N-AYNASA-LEALLN---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGSE 238 (399)
Q Consensus 175 ~-~~~~~~-l~~l~~---~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~~ 238 (399)
. ....+. ++.... .....++..++++. ...++++.++++.+.|+++|+++++|+ |+..+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aph~---~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~ 218 (408)
T PRK08418 152 AVDELYQDFLARFEESKKFKSKKFIPAIAIHS---PYSVHPILAKKALQLAKKENLLVSTHFLESKAERE 218 (408)
T ss_pred chhhhHHHHHHHHHhhhcccCCceeEEEeCCC---CCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHH
Confidence 0 011111 111111 12223555555542 236789999999999999999999996 5555543
No 83
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=99.75 E-value=1.5e-16 Score=156.77 Aligned_cols=168 Identities=19% Similarity=0.202 Sum_probs=96.5
Q ss_pred eeeEEEEECCEEEEeccCCCCC-CCCCCCcEEeCCCCEEecceeecccccCCCCCC---------Cc-------------
Q 015826 59 ISGAVEIKEGNIISIVSEEDWP-RNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------EW------------- 115 (399)
Q Consensus 59 ~~~~V~I~dG~I~~Ig~~~~~~-~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~---------~~------------- 115 (399)
.+++|+|+||+|++||+..+.. ..+++.++||++|++|||||||+|+|+.+..+. .|
T Consensus 25 ~~g~V~v~~g~I~~vG~~~~~~~~~~~~~~viD~~g~~v~PGlVn~H~Hl~~~~~rg~~~~~~l~~wl~~~~~~~e~~~~ 104 (429)
T cd01303 25 EDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIHAPQYANIGSGLGEPLLDWLETYTFPEEAKFA 104 (429)
T ss_pred CCeEEEEECCEEEEeCchhhhhhhcCCCceEEcCCCCEEecceeeeeecccccccccccCCCcHHHHHHhhhhHHHHhcC
Confidence 4789999999999999854321 112356899999999999999999998653110 00
Q ss_pred --Cch----HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhc---cCceeEEeeeeeeCC-----ChhhHHH
Q 015826 116 --EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYVDVGFWGGLVPE-----NAYNASA 181 (399)
Q Consensus 116 --e~~----~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~ 181 (399)
++. .....+++++||||++++. ... ........+.+.. +..+.+.......+. ..+.++.
T Consensus 105 ~~~~~~~~a~~~~~e~l~~GvTtv~d~~-~~~-----~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (429)
T cd01303 105 DPAYAREVYGRFLDELLRNGTTTACYFA-TIH-----PESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRDTAESSYRD 178 (429)
T ss_pred CHHHHHHHHHHHHHHHHhCCceEEEeec-ccC-----hhHHHHHHHHHHHhCCeEEEeeeeecCCCCcccccCHHHHHHH
Confidence 011 1234567899999999876 211 1122222222221 222211111100011 1111222
Q ss_pred HHHHHH--cCC-cEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCEEEec-CChh
Q 015826 182 LEALLN--AGV-LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK-RPLLVHA-EMEK 235 (399)
Q Consensus 182 l~~l~~--~G~-~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g-~~v~~H~-~~~~ 235 (399)
..++++ .+. ..+...+.++. ...++++.++++++.|+++| +++++|+ ++.+
T Consensus 179 ~~~~i~~~~~~~~~v~~~~~p~~---~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~ 234 (429)
T cd01303 179 TKRLIERWHGKSGRVKPAITPRF---APSCSEELLAALGKLAKEHPDLHIQTHISENLD 234 (429)
T ss_pred HHHHHHHHhCcCCceEEEEecCc---CCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHH
Confidence 233322 111 22444444432 23578999999999999999 9999998 4443
No 84
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=99.74 E-value=2.4e-16 Score=155.06 Aligned_cols=270 Identities=18% Similarity=0.218 Sum_probs=151.4
Q ss_pred ccEEEEccEEEcCCCc---eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCC------
Q 015826 43 NQYWLTSKRIVTPKGV---ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT------ 113 (399)
Q Consensus 43 ~~~li~n~~vv~~~~~---~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~------ 113 (399)
..++|+|..++..++. .+++|.|+||||+.|++..+.+ ++.++||++|++|+|||||+|+|+.+....
T Consensus 2 ~~~~i~~~~~~~~d~~~~~~~~~~~i~~g~I~~ig~~~~~~---~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~~g~~~~~ 78 (421)
T COG0402 2 TMLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGP---PDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLADDL 78 (421)
T ss_pred cceeeeCcEEeecCcccceeeeeEEEcCCEEEEeCCcCCCC---CCceeecCCCCEeccCccccccchHHHHHhhhhccc
Confidence 3567888888875442 4699999999999999875432 357899999999999999999998654210
Q ss_pred ------------------CcCchH----HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeee--
Q 015826 114 ------------------EWEGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG-- 169 (399)
Q Consensus 114 ------------------~~e~~~----~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 169 (399)
+.++++ .....++++||||+..+. +..+. .....++...+. ..+.........
T Consensus 79 ~l~~wl~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~t~~~~~~-~~~~~-~~~~~~~a~~~~-g~r~~~~~~~~~~~ 155 (421)
T COG0402 79 PLLEWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHV-DVVAE-SADAAFEAALEV-GLRAVLGPVLQDVA 155 (421)
T ss_pred chHHHHHHHHhHHHhhcCCHHHHHHHHHHHHHHHHhcCcccccccc-chhhh-hHHHHHHHHHHh-CCeeEeeeccccCC
Confidence 111222 235567899999976655 21110 001122222211 111111111111
Q ss_pred ---eeeCCChh---hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhhchhHHh
Q 015826 170 ---GLVPENAY---NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGSERHVK 242 (399)
Q Consensus 170 ---~~~~~~~~---~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~~~~~~ 242 (399)
......+. ..+.++++...| .+++...++ ....++++.++.+.+.++++|+++++|+ |+.++......
T Consensus 156 ~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~---~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~ 230 (421)
T COG0402 156 FPDPGAETDEELEETEELLREAHGLG--RDVVGLAPH---FPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLE 230 (421)
T ss_pred CCcccccchHHHHHHHHHHHHHhcCC--CeeEEEecC---CCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHh
Confidence 00111111 223344444445 344444443 1246899999999999999999999996 66655443332
Q ss_pred hccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEcccc
Q 015826 243 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~ 322 (399)
..+ .+ .+...-.... .. ..-+-+|+.|++. +.+++++ +. .+++-.||-
T Consensus 231 ~~g-------------~~-------~~~~~~~~g~----l~-~~~~~~H~~~~~~--~e~~~l~---~~--g~~v~~cP~ 278 (421)
T COG0402 231 PYG-------------AR-------PVERLDLLGL----LG-SHTLLAHCVHLSE--EELELLA---ES--GASVVHCPR 278 (421)
T ss_pred hcC-------------CC-------HHHHHHHcCC----CC-CCeEEEEeccCCH--HHHHHHh---hC--CCeEEECcc
Confidence 111 00 1111111111 11 1134567777766 5666666 33 456666773
Q ss_pred ccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCCCc
Q 015826 323 YLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVP 374 (399)
Q Consensus 323 ~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~~~ 374 (399)
.+..-..| +.| +++.+..|..-.++||-+.++.
T Consensus 279 -----sN~~L~sG----~~p----------~~~~~~~gv~v~~gTD~~~~~~ 311 (421)
T COG0402 279 -----SNLKLGSG----IAP----------VRRLLERGVNVALGTDGAASNN 311 (421)
T ss_pred -----hhccccCC----CCC----------HHHHHHcCCCEEEecCCccccC
Confidence 11111111 233 5667788888899999977753
No 85
>PRK06846 putative deaminase; Validated
Probab=99.74 E-value=9.8e-16 Score=150.31 Aligned_cols=245 Identities=16% Similarity=0.194 Sum_probs=144.8
Q ss_pred eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCC-Cc----------------------
Q 015826 59 ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-EW---------------------- 115 (399)
Q Consensus 59 ~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~-~~---------------------- 115 (399)
..++|.|+||+|++|++....+ ..+.++||++|++|+|||||+|+|+.++... ..
T Consensus 30 ~~~~i~i~~g~I~~i~~~~~~~--~~~~~~id~~g~~v~Pg~iD~H~H~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 107 (410)
T PRK06846 30 ALCTLEIQDGKIVAIRPNKQVP--DATLPTYDANGLLMLPAFREMHIHLDKTYYGGPWKACRPAKTIQDRIELEQKELPE 107 (410)
T ss_pred eeEEEEEECCEEEEeecCCCCC--CCCCceEeCCCCEEecCEEeeeecccchhhccchhhcCCcccHHHHHhhhhhhHHH
Confidence 4679999999999999753221 1245799999999999999999999864321 00
Q ss_pred --Cch----HHHHHHHHcCCeeeeecCcCCCCCCC--CcHHHHHHHHHHHhccCceeEEeeeeeeCC---ChhhHHHHHH
Q 015826 116 --EGF----PSGTKAAAAGGITTLIDMPLNSDPST--ISTETLKLKVDAAEKRIYVDVGFWGGLVPE---NAYNASALEA 184 (399)
Q Consensus 116 --e~~----~~~~~~al~~GvTtv~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~ 184 (399)
+.. .......+..|+|+++++. +..+.. ...+.+.+.++.... .++..... +... .....+.+++
T Consensus 108 ~~~~~~~~a~~~l~~~~~~Gtt~~r~~v-~~~~~~~~~~~~a~~e~l~e~~~--~v~~~~~a-~~~~g~~~~~~~~lL~~ 183 (410)
T PRK06846 108 LLPTTQERAEKLIELLQSKGATHIRSHC-NIDPVIGLKNLENLQAALERYKD--GFTYEIVA-FPQHGLLRSNSEPLMRE 183 (410)
T ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEEE-eeCcccccchHHHHHHHHHHhhC--cceEEEEe-ccCcccCCccHHHHHHH
Confidence 000 0123345677999998886 323321 112222222222222 22222110 1110 1223467888
Q ss_pred HHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHH
Q 015826 185 LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 264 (399)
Q Consensus 185 l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 264 (399)
.++.|+..++.. .+. .....+.++++++++.|+++|+++++|.......
T Consensus 184 al~~Ga~~i~gl-~p~---~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~--------------------------- 232 (410)
T PRK06846 184 AMKMGAHLVGGV-DPA---SVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGPL--------------------------- 232 (410)
T ss_pred HHHcCCCEEeCC-CCc---cCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCCh---------------------------
Confidence 889998866532 221 1124678999999999999999999998643210
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC-----hhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceE
Q 015826 265 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD-----ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFK 339 (399)
Q Consensus 265 E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~-----~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~ 339 (399)
....+.++++..++.+. ..++++.|... ..+..++++..++.|+.|+.. +| . ..+
T Consensus 233 ~~~~~~~~~~~~~~~gl-----~~~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v~~~-~~---------~-~~g---- 292 (410)
T PRK06846 233 GVATIKYLVETTEEAQW-----KGKVTISHAFALGDLNEEEVEELAERLAAQGISITST-VP---------I-GRL---- 292 (410)
T ss_pred hHHHHHHHHHHHHHhCC-----CCCEEEEecchhhcCCHHHHHHHHHHHHHcCCeEEEe-CC---------C-CCC----
Confidence 01133445555555421 22789999863 213344567788888877632 11 0 011
Q ss_pred EcCCCCChhhHHHHHHHHhcCCccEEeCCCC
Q 015826 340 CAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (399)
Q Consensus 340 ~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~ 370 (399)
.|| +.+.++.|..-.+|||..
T Consensus 293 -~~p---------~~~l~~~Gv~v~lGtD~~ 313 (410)
T PRK06846 293 -HMP---------IPLLHDKGVKVSLGTDSV 313 (410)
T ss_pred -CCC---------HHHHHhCCCeEEEecCCC
Confidence 232 455667799999999963
No 86
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=99.74 E-value=1.6e-16 Score=154.22 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=92.7
Q ss_pred EEEECCEEEEeccCCCCCC-CCCCCcEEeCCCCEEecceeecccccCCCCCC----------------------------
Q 015826 63 VEIKEGNIISIVSEEDWPR-NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------------------------- 113 (399)
Q Consensus 63 V~I~dG~I~~Ig~~~~~~~-~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~---------------------------- 113 (399)
|+|+||||++|++....+. .+.+.++||++|++|+|||||+|+|+......
T Consensus 1 i~i~~g~I~~ig~~~~~~~~~~~~~~~iD~~G~~v~Pg~vn~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (371)
T cd01296 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAGGGILSTVR 80 (371)
T ss_pred CEEECCEEEEEeCchhcccccCCCceEEECCCCEEecceeecCCCCcCCCCcHHHHHHHHCCCCHHHHHHcCCChHHHHH
Confidence 5799999999998543220 11245799999999999999999999763211
Q ss_pred -----CcCch----HHHHHHHHcCCeeeeecCcC-CCCCCCCcHHHHHHHHHHHhccCceeEEeeee---eeCC-C---h
Q 015826 114 -----EWEGF----PSGTKAAAAGGITTLIDMPL-NSDPSTISTETLKLKVDAAEKRIYVDVGFWGG---LVPE-N---A 176 (399)
Q Consensus 114 -----~~e~~----~~~~~~al~~GvTtv~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~---~ 176 (399)
+.+++ ......++++|||++.++.. +..+ ....+.++... .+.....+++..... ..+. . .
T Consensus 81 ~~~~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~~~~~-~~~~~~~~a~~-~~~~~~~~~l~~~~~~~~~~p~~~~~~~ 158 (371)
T cd01296 81 ATRAASEDELFASALRRLARMLRHGTTTVEVKSGYGLDL-ETELKMLRVIR-RLKEEGPVDLVSTFLGAHAVPPEYKGRE 158 (371)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCH-HHHHHHHHHHH-HHHhhCCCceEeeeeecccCCcccCChH
Confidence 00111 22355678999999988421 1111 01112222222 222211222222111 1111 0 1
Q ss_pred hhH----HH-HHHHH-HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 177 YNA----SA-LEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 177 ~~~----~~-l~~l~-~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
... ++ ++... +.++.+++.+... ...+.+.++++++.|+++|+++.+|+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~A~~~g~~v~~H~~e 215 (371)
T cd01296 159 EYIDLVIEEVLPAVAEENLADFCDVFCEK------GAFSLEQSRRILEAAKEAGLPVKIHADE 215 (371)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeecC------CccCHHHHHHHHHHHHHCCCeEEEEEcC
Confidence 111 11 22111 2556777765322 2356899999999999999999999864
No 87
>PRK10027 cryptic adenine deaminase; Provisional
Probab=99.73 E-value=7e-16 Score=155.09 Aligned_cols=228 Identities=20% Similarity=0.163 Sum_probs=149.3
Q ss_pred ccEEEEccEEEcCCC--ceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHH
Q 015826 43 NQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 120 (399)
Q Consensus 43 ~~~li~n~~vv~~~~--~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~ 120 (399)
.+++|+|++|+++.. ...++|+|+||+|++|++..... .+.++||++|++|+|||||+|+|+..+.. +.+++
T Consensus 30 ~dllI~ng~vv~~~~~~~~~~~V~I~~GrI~~Vg~~~~~~---~~~~vIDa~G~~v~PGlIDaHvHiess~~-~p~~~-- 103 (588)
T PRK10027 30 ADYIIDNVSILDLINGGEISGPIVIKGRYIAGVGAEYADA---PALQRIDARGATAVPGFIDAHLHIESSMM-TPVTF-- 103 (588)
T ss_pred CCEEEECcEEEeCCCCcEEeeEEEEECCEEEEeCCCCCCC---CCCeEEECCCCEEEECeEeccccCCcccC-CHhHH--
Confidence 578999999998643 45789999999999997643211 24579999999999999999999987654 33333
Q ss_pred HHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeee----eeeC--CC---hhhHHHHHHHHH-cCC
Q 015826 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG----GLVP--EN---AYNASALEALLN-AGV 190 (399)
Q Consensus 121 ~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~---~~~~~~l~~l~~-~G~ 190 (399)
.+.++.+||||++++| ++.+.....+.++..++.+.... .++++.. ..++ .+ .-..++++++++ ..+
T Consensus 104 -a~aal~~G~TtVv~dP-hei~nv~g~~gi~~~l~~a~~~p-~~~~~~~ps~vpa~~~~Et~Ga~~~~~~~~~~l~~~~v 180 (588)
T PRK10027 104 -ETATLPRGLTTVICDP-HEIVNVMGEAGFAWFARCAEQAR-QNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQV 180 (588)
T ss_pred -HHHHHhCceEEEEcCC-CCcccCCCHHHHHHHHHHhhhCC-CeeEEeecccCcCCcccccCCCcCCHHHHHHHhcCCCc
Confidence 4568999999999999 66666666777777766654332 2322211 1111 00 113567888776 567
Q ss_pred cEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhh--chhHHhhccCcCCchhhhcCCCCCChHHHHHH
Q 015826 191 LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG--SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268 (399)
Q Consensus 191 ~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~ 268 (399)
.++.-.|.++++ ...+++.+.++.. + .|+++.-|+-.-.. ...++. .| . ..-.|...
T Consensus 181 ~glgEvMn~~~V---~~~d~~~~~ki~~-~--~~~~idGH~p~l~g~~L~ay~a-aG----i----------~sDHE~~t 239 (588)
T PRK10027 181 TGLAEMMDYPGV---ISGQNALLDKLDA-F--RHLTLDGHCPGLGGKELNAYIA-AG----I----------ENCHESYQ 239 (588)
T ss_pred eeEEeccCcccc---ccCCHHHHHHHHH-h--CCCceECCCCCCChHHHHHHHH-cC----C----------CCCcccCC
Confidence 788888877653 2356777777763 3 89999999753221 111111 11 1 11112233
Q ss_pred HHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHH
Q 015826 269 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAK 309 (399)
Q Consensus 269 v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak 309 (399)
..++.+-.+ .|..+.+.+-|.. ..++.+..+.
T Consensus 240 ~eea~eklr--------~Gm~v~iRegS~~-~nl~~l~~~~ 271 (588)
T PRK10027 240 LEEGRRKLQ--------LGMSLMIREGSAA-RNLNALAPLI 271 (588)
T ss_pred HHHHHHHHH--------CCCEEEEeCCccc-cCHHHHHHHh
Confidence 444444444 3889999999887 7777777765
No 88
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=99.72 E-value=4e-16 Score=151.70 Aligned_cols=51 Identities=27% Similarity=0.489 Sum_probs=41.2
Q ss_pred eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCC
Q 015826 59 ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110 (399)
Q Consensus 59 ~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~ 110 (399)
.+++|+|+||+|++|++....+. +.+.++||++|++|||||||+|+|+...
T Consensus 2 ~~~~v~i~~g~I~~vg~~~~~~~-~~~~~~iD~~g~~v~PGlin~H~H~~~~ 52 (377)
T TIGR01224 2 EDAVILIHGGKIVWIGQLAALPG-EEATEIIDCGGGLVTPGLVDPHTHLVFA 52 (377)
T ss_pred CceEEEEECCEEEEEechhhCCc-ccCCeEEeCCCCEEcccEEecccCcccc
Confidence 46899999999999997532221 1256799999999999999999999753
No 89
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=99.72 E-value=1e-16 Score=155.20 Aligned_cols=184 Identities=20% Similarity=0.258 Sum_probs=122.2
Q ss_pred EEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCC-CC--CcCchHHH
Q 015826 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG-RT--EWEGFPSG 121 (399)
Q Consensus 45 ~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~-~~--~~e~~~~~ 121 (399)
++|+|++|+++....+++|.|+||||++|++....+ .+.++||++|++|+|||||+|+|..... +. .++++...
T Consensus 1 ~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~---~~~~vid~~g~~l~PG~iD~H~H~~~g~~~~~~~~e~~~~~ 77 (374)
T cd00854 1 LIIKNARILTPGGLEDGAVLVEDGKIVAIGPEDELE---EADEIIDLKGQYLVPGFIDIHIHGGGGADFMDGTAEALKTI 77 (374)
T ss_pred CEEEeEEEeCCCEEcccEEEEECCEEEEecCCCCcc---cCCcEEECCCCEecccEEEeeecccCCCCCCCCCHHHHHHH
Confidence 368999999984345789999999999998754322 2457999999999999999999997532 22 24677888
Q ss_pred HHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc-CceeEEee--eeeeCC------C-----hhhHHHHHHHHH
Q 015826 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFW--GGLVPE------N-----AYNASALEALLN 187 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~------~-----~~~~~~l~~l~~ 187 (399)
++.++++||||++++. .+.+.....+.+..+.+..... +...++++ +.+... + ....++++++++
T Consensus 78 ~~~~~~~GvTtv~~t~-~t~~~~~~~~~l~~~~~~~~~~~g~~~~g~hleGP~~~~~~~g~h~~~~~~~~~~~~~~~~~~ 156 (374)
T cd00854 78 AEALAKHGTTSFLPTT-VTAPPEEIAKALAAIAEAIAEGQGAEILGIHLEGPFISPEKKGAHPPEYLRAPDPEELKKWLE 156 (374)
T ss_pred HHHHHccCcceeeccc-cCCCHHHHHHHHHHHHHHhhcCCCCeeEEEeeecCccCcccCCCCCHHHcCCcCHHHHHHHHH
Confidence 9999999999999987 3433333334444444433322 12223222 222111 0 113467888888
Q ss_pred cCCcEEEEeecCCCCCCCCCCCHHHH--HHHHHHHHhcCCCEE-EecC-ChhhchhHHh
Q 015826 188 AGVLGLKSFMCPSGINDFPMTNASHI--KEGLSVLARYKRPLL-VHAE-MEKGSERHVK 242 (399)
Q Consensus 188 ~G~~~ik~~~~~~~~~~~~~~~~~~l--~~~~~~a~~~g~~v~-~H~~-~~~~~~~~~~ 242 (399)
.+...+|++... +|.. .+++++++++|+++. .|.. +...+.+.+.
T Consensus 157 ~~~~~ik~~tla----------PE~~~~~~~i~~~~~~gi~v~~GH~~a~~~~~~~a~~ 205 (374)
T cd00854 157 AAGGLIKLVTLA----------PELDGALELIRYLVERGIIVSIGHSDATYEQAVAAFE 205 (374)
T ss_pred hcCCCEEEEEEC----------CCCCChHHHHHHHHHCCeEEEeeCCcCCHHHHHHHHH
Confidence 777788886322 2333 678899999999995 9975 3344444443
No 90
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.71 E-value=4.7e-17 Score=157.26 Aligned_cols=66 Identities=35% Similarity=0.524 Sum_probs=53.2
Q ss_pred ccEEEEccEEEcCCC-ceeeEEEEECCEEEEeccCC-CCCCCCCCCcEEeCCCCEEecceeecccccCCCC
Q 015826 43 NQYWLTSKRIVTPKG-VISGAVEIKEGNIISIVSEE-DWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111 (399)
Q Consensus 43 ~~~li~n~~vv~~~~-~~~~~V~I~dG~I~~Ig~~~-~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~ 111 (399)
..+.+++++.++.-+ +.++.|+|+||||++|++.. ..+ ++.++||++|++|+|||||+|+|+...+
T Consensus 10 ~~~~~~~~~~~~~~~~i~~~~v~i~~GkI~~vg~~~~~~~---~~~~viD~~G~~V~PGLID~HtHl~~~~ 77 (406)
T COG1228 10 AMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIP---AGAEVIDAKGKTVTPGLIDAHTHLGFGG 77 (406)
T ss_pred hhheeeccccCCCcceeecceEEEECCEEEEecCcccCCC---CCCeEEeCCCCEEccceeeccccccccC
Confidence 356788888877444 45799999999999999873 322 4678999999999999999999997643
No 91
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=99.71 E-value=2.8e-16 Score=155.46 Aligned_cols=67 Identities=28% Similarity=0.464 Sum_probs=55.7
Q ss_pred CCccEEEEccEEEcCCCc--eeeEEEEECCEEEEeccCCCCCCC-CCCCcEEeCCCCEEecceeeccccc
Q 015826 41 PYNQYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRN-SKTGQVVDYGEAVIMPGLIDVHAHL 107 (399)
Q Consensus 41 ~~~~~li~n~~vv~~~~~--~~~~V~I~dG~I~~Ig~~~~~~~~-~~~~~vID~~G~~vlPGlID~H~H~ 107 (399)
++.+++++||+|++++.. .-..|.|+||||++||...+.... .+..++||++|++|+|||||+|.|+
T Consensus 3 ~~adlil~nG~i~T~~~~~p~aeAvaI~dGrI~avG~~~~~~~~~~~~t~viDL~Gk~v~PGfvDaH~Hl 72 (535)
T COG1574 3 MAADLILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVDAHLHL 72 (535)
T ss_pred cccceeEECCEEEeccCCCcceeEEEEcCCEEEEEcChHHHHhhcCCCceEEeCCCCEeccccchhhHHH
Confidence 356899999999998863 457999999999999987543221 1467899999999999999999998
No 92
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=99.70 E-value=7.2e-16 Score=132.44 Aligned_cols=245 Identities=18% Similarity=0.227 Sum_probs=167.0
Q ss_pred EecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHh-ccCceeEEeeeeeeCC
Q 015826 96 IMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE-KRIYVDVGFWGGLVPE 174 (399)
Q Consensus 96 vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 174 (399)
-+|+.-|+|+|+++..+- ..-.-....+||.....|| |..|++.+.+..-.+..... -.+...+ .+.+--.
T Consensus 6 ~i~~~~DmHvHlR~g~ml-----~aVvP~~a~ggvs~AyvMP-NL~PPiTt~da~i~YkK~i~kL~skttf--LMslYLs 77 (344)
T KOG2902|consen 6 TITQPDDMHVHLRDGDML-----HAVVPHSASGGVSRAYVMP-NLKPPITTTDAAIIYKKFIMKLPSKTTF--LMSLYLS 77 (344)
T ss_pred ecCCccceeEEeccCCee-----eeeccccccCceeEEEEcC-CCCCCcchHHHHHHHHHHHHhcCcccee--EEEEeec
Confidence 478899999999875321 0111223478899999999 77787766554433333222 1111122 1111111
Q ss_pred ChhhHHHHHHHHHc-CCcEEEEeecCCCCCCCCCC--CHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCch
Q 015826 175 NAYNASALEALLNA-GVLGLKSFMCPSGINDFPMT--NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 251 (399)
Q Consensus 175 ~~~~~~~l~~l~~~-G~~~ik~~~~~~~~~~~~~~--~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~ 251 (399)
.....+++++..+. ++.++|.|......+..... .-+.+..++++.++.|+++.+|-|-+......+.
T Consensus 78 ~~ttPe~I~eAa~~~~irgVK~YPaGaTTNS~~GV~~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D~~Vf--------- 148 (344)
T KOG2902|consen 78 DKTTPEEIREAAESGVIRGVKLYPAGATTNSQDGVTDLFGKFYPVFEAMQEQNMPLNVHGEVPPSIDGHVF--------- 148 (344)
T ss_pred CCCCHHHHHHHHHhCceeeEEeccCcccccccccccccchhhhHHHHHHHHcCceEEecCCCCCccCCcee---------
Confidence 22245678887776 56689987543211111111 1356778899999999999999876554321111
Q ss_pred hhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccC
Q 015826 252 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 331 (399)
Q Consensus 252 ~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~ 331 (399)
.+|..-+..++.+-.+ +++.++...|+++. ++++.++.++ +..|-+.+++|||+++.++.
T Consensus 149 -----------~aE~~Flptll~Lhqr------fP~LKivlEHcTt~-dAv~~ve~a~--~~sVaaTvTahHL~Lt~~dw 208 (344)
T KOG2902|consen 149 -----------DAEKIFLPTLLQLHQR------FPQLKIVLEHCTTM-DAVNFVESAK--EGSVAATVTAHHLLLTRNDW 208 (344)
T ss_pred -----------cchhhhHHHHHHHHHh------CccceeHHHhcccH-HHHHHHHhhc--CCceeeEeehheeEEehhhh
Confidence 1344455666666555 46889999999998 8999998865 45789999999999999885
Q ss_pred CCCCcceEEcCCCCChhhHHHHHHHHhcCCcc-EEeCCCCCCCccccc
Q 015826 332 PDGDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKL 378 (399)
Q Consensus 332 ~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id-~i~sdh~p~~~~~k~ 378 (399)
++++...|.|-.+.+.||++|.+|.-+|..- ++|||.+||....|+
T Consensus 209 -qg~P~nfCkPVaK~e~dr~AlvkAatSg~pkFFfGsDSAPHprs~K~ 255 (344)
T KOG2902|consen 209 -QGQPHNFCKPVAKREIDREALVKAATSGSPKFFFGSDSAPHPRSRKE 255 (344)
T ss_pred -cCCCcccccccccCcccHHHHHHHHhcCCCceeecCCCCCCcccccc
Confidence 3466778999999999999999999999888 789999999988885
No 93
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=99.68 E-value=9.8e-16 Score=147.43 Aligned_cols=188 Identities=18% Similarity=0.195 Sum_probs=119.8
Q ss_pred ccEEEEccEEEcCCCce-eeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCC---CCcCch
Q 015826 43 NQYWLTSKRIVTPKGVI-SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR---TEWEGF 118 (399)
Q Consensus 43 ~~~li~n~~vv~~~~~~-~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~---~~~e~~ 118 (399)
++++|+|++|+++++.. +++|.|+||||++|++..+.+ +..++||++|++|+|||||+|+|...... .+.+++
T Consensus 3 ~~~~i~n~~i~~~~~~~~~~~i~V~dGkI~~I~~~~~~~---~~~~viD~~G~~i~PGfID~HvHg~~g~~~~~~~~e~~ 79 (380)
T TIGR00221 3 ESYLLKDIAIVTGNEVIDNGAVGINDGKISTVSTEAELE---PEIKEIDLPGNVLTPGFIDIHIHGCGGVDTNDASFETL 79 (380)
T ss_pred ceEEEEeeEEECCCCEEeccEEEEECCEEEEEcccccCC---CCCeEEECCCCEEccceeeeeeccccCcCCCCCCHHHH
Confidence 46899999999987765 689999999999998653322 24579999999999999999999864311 233678
Q ss_pred HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHH-hccCceeEEeeee--eeCC------Ch-----hhHHHHHH
Q 015826 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA-EKRIYVDVGFWGG--LVPE------NA-----YNASALEA 184 (399)
Q Consensus 119 ~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~------~~-----~~~~~l~~ 184 (399)
...++.++++|||+++.+. .+.+.....+.++...+.. ...+...+++|.. +... ++ -..+++++
T Consensus 80 ~~~~~~~~~~GvTt~l~t~-~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~~~Gah~~~~i~~p~~~~~~~ 158 (380)
T TIGR00221 80 EIMSERLPKSGCTSFLPTL-ITQPDENIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEKKGAHPPEYIREPDVELFKK 158 (380)
T ss_pred HHHHHHHHhcCeeEEeeec-cCCCHHHHHHHHHHHHHHHhccCCceeeeEeeecCcCChhhcCCCCHHHhhCcCHHHHHH
Confidence 8889999999999999887 3444333334444443332 1223445665542 2111 11 13567778
Q ss_pred HHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEE-Eec-CChhhchhHHh
Q 015826 185 LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLL-VHA-EMEKGSERHVK 242 (399)
Q Consensus 185 l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~-~H~-~~~~~~~~~~~ 242 (399)
+.+.....+|.....+ -.+ .-.++++.+.++|+.|. -|. .+.+.+...+.
T Consensus 159 ~~~~~~~~i~~vTlAP------E~~--~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~ 210 (380)
T TIGR00221 159 FLCEAGGVITKVTLAP------EED--QHFELIRHLKDAGIIVSAGHTNATYELAKAAFK 210 (380)
T ss_pred HHHhcCCCEEEEEECC------CCC--ChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHH
Confidence 8764333455543221 111 12355667788898886 575 44455544444
No 94
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.68 E-value=1.7e-15 Score=148.80 Aligned_cols=165 Identities=18% Similarity=0.239 Sum_probs=93.2
Q ss_pred cCCCc-eeeEE-EEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCC---CCCC-----------c--
Q 015826 54 TPKGV-ISGAV-EIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRTE-----------W-- 115 (399)
Q Consensus 54 ~~~~~-~~~~V-~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~~~-----------~-- 115 (399)
++++. .+++| +|+||+|++||+... .++||++|++|||||||+|+|+.+. +... |
T Consensus 3 ~~~~~~~~~~i~~v~~g~I~~Vg~~~~-------~~~iD~~g~lv~PGfVn~H~Hl~~~~~rg~~~~~~~~~~~l~~w~~ 75 (418)
T cd01313 3 LPEGWERNVRIEVDADGRIAAVNPDTA-------TEAVALLGGALLPGMPNLHSHAFQRAMAGLTEYRGSAADSFWTWRE 75 (418)
T ss_pred CCCceecCeEEEEeCCCeEEEecCCCC-------CcccccCCCeeccCccccCccHHHHHhcccccccCCCCCChhhHHH
Confidence 44554 36899 999999999997531 2469999999999999999999753 1100 0
Q ss_pred -----------Cch----HHHHHHHHcCCeeeeecCcCCCCCCC------CcHHHHHHHHHHHhc---cCceeEEee--e
Q 015826 116 -----------EGF----PSGTKAAAAGGITTLIDMPLNSDPST------ISTETLKLKVDAAEK---RIYVDVGFW--G 169 (399)
Q Consensus 116 -----------e~~----~~~~~~al~~GvTtv~d~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~~~--~ 169 (399)
+++ .....+++++||||++|+.. ..+.. ......+...+.+.. +..+....+ .
T Consensus 76 ~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~-~~~~~~~~~~~~~~~~~~a~~~a~~~~GiR~~~~~~~~~~~ 154 (418)
T cd01313 76 LMYRFAARLTPEQIEAIARQLYIEMLLAGITAVGEFHY-VHHDPDGTPYADPAELAQRVIAAASDAGIGITLLPVLYARA 154 (418)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEEeee-eccCCCCCccCChhhhHHHHHHHHHHhCCeEEeeeeEEecc
Confidence 111 12345678999999999752 11100 011111222222221 211111111 0
Q ss_pred eeeCCC------------hhhHHHHHHHH----HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 170 GLVPEN------------AYNASALEALL----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 170 ~~~~~~------------~~~~~~l~~l~----~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
+..... .+..+.+++++ +.+ .+...++++. ...++++.++++++.|++ |+++++|+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~---~~~~s~e~l~~~~~~a~~-g~~i~~H~~ 227 (418)
T cd01313 155 GFGGPAPNPGQRRFINGYEDFLGLLEKALRAVKEHA--AARIGVAPHS---LRAVPAEQLAALAALASE-KAPVHIHLA 227 (418)
T ss_pred CCCCCCCchhhhhhcccHHHHHHHHHHHhhhhccCC--ceEEEEccCC---CCCCCHHHHHHHHHHHhc-CCceEEEeC
Confidence 110000 01122233322 123 2444444432 125799999999999999 999999983
No 95
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=99.66 E-value=5.3e-15 Score=143.84 Aligned_cols=245 Identities=22% Similarity=0.302 Sum_probs=155.2
Q ss_pred CCCccEEEEccEEEcCCC--ceeeEEEEECCEEEE-eccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcC
Q 015826 40 LPYNQYWLTSKRIVTPKG--VISGAVEIKEGNIIS-IVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWE 116 (399)
Q Consensus 40 ~~~~~~li~n~~vv~~~~--~~~~~V~I~dG~I~~-Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e 116 (399)
+...+++++||+++|.-. +..++|.|.+|+|+. +++.. .++.++||+.|+++.|||||.|+|+......
T Consensus 21 ~~~adlv~~ng~ivdv~~gei~~~dIaI~~grI~~v~~~~~-----~e~~~~iDa~g~yivPGfID~H~HIESSm~t--- 92 (584)
T COG1001 21 RAKADLVLKNGRIVDVVTGEIYKGDIAIAGGRIVGVIGEYR-----AEATEVIDAAGRYIVPGFIDAHLHIESSMLT--- 92 (584)
T ss_pred CCCCCEEEECCEEEEeeeccEEeeeEEEECCEEEEeecCcC-----cccceeecCCCCEeccceeecceeccccccC---
Confidence 345699999999998644 568999999999999 55443 1467899999999999999999998765433
Q ss_pred chHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeee-eCCC-------hhhHHHHHHHHH-
Q 015826 117 GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL-VPEN-------AYNASALEALLN- 187 (399)
Q Consensus 117 ~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~l~~l~~- 187 (399)
-...++..+..||||++.-|- .--.....+.++..++.++. ..+++.++... ++.. .-..+.++++++
T Consensus 93 -P~~FA~~Vlp~GtTtvV~DPH-EIaNV~G~~Gi~~ml~~a~~-~pl~~~~~~pScVPat~~Et~Ga~l~a~~i~e~~~~ 169 (584)
T COG1001 93 -PSEFARAVLPHGTTTVVSDPH-EIANVLGEDGIRFMLDEAKE-TPLKVYVMLPSCVPATPFETSGAELTAEDIKELLEH 169 (584)
T ss_pred -HHHHHHHhhccCceEEeeCcH-HHHhhccHHHHHHHHHHHhh-CCeEEEEecccCccCCccccCCceecHHHHHHHhhC
Confidence 235578889999999986541 10011234555666666553 34565544321 1111 113567788776
Q ss_pred cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhch-hHHhhccCcCCchhhhcCCCCCChHHHH
Q 015826 188 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE-RHVKLEDDTLDTRSYSTYLKTRPPSWEE 266 (399)
Q Consensus 188 ~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~E~ 266 (399)
..+.++.-.|.++++ ...++.+...++.+++.|+++.-|+....... ......| ...-.|.
T Consensus 170 p~Vigl~E~Mn~pgV----i~~D~~~l~kl~a~~~~~k~VdGHapgl~g~~Ln~Y~aaG--------------i~tDHE~ 231 (584)
T COG1001 170 PEVIGLGEMMNFPGV----IEGDPDMLAKLEAARKAGKPVDGHAPGLSGKELNAYIAAG--------------ISTDHES 231 (584)
T ss_pred CCccchhhhcCCchh----ccCCHHHHHHHHHHHHcCCeecccCCCCChHHHHHHHhcC--------------CCcCccc
Confidence 456677777776653 34566777888999999999999986543211 1111111 1111122
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHH-HHCCCCEEEEcccccccccccc
Q 015826 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEA-KTNGDSITVETCPHYLAFSAEE 330 (399)
Q Consensus 267 ~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~a-k~~G~~vt~e~~p~~L~~~~~~ 330 (399)
....++++-.+ .|..+.+.+.|.. ..++.+-.+ .+.|. ++++|++++
T Consensus 232 ~t~EEa~~klr--------~Gm~i~iReGS~a-~dl~~l~~~i~e~~~--------~~~~lcTDD 279 (584)
T COG1001 232 TTAEEALEKLR--------LGMKIMIREGSAA-KDLAALLPAITELGS--------RRVMLCTDD 279 (584)
T ss_pred CCHHHHHHHHh--------CCcEEEEEcCchh-hhHHHHHHHHhhcCC--------ceEEEECCC
Confidence 23344444343 3888999999887 666655554 34443 355666554
No 96
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.66 E-value=4.8e-15 Score=143.59 Aligned_cols=158 Identities=16% Similarity=0.231 Sum_probs=90.3
Q ss_pred CEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCC---------Cc-------------Cch----HHH
Q 015826 68 GNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------EW-------------EGF----PSG 121 (399)
Q Consensus 68 G~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~---------~~-------------e~~----~~~ 121 (399)
|+|++||+..+.....++.+++|+.|++|||||||+|+|+.+..+. .| ++. ..+
T Consensus 1 ~~I~aVG~~~~~~~~~~~~~v~d~~g~~v~PGlVnaH~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~e~~~~~a~~~ 80 (381)
T cd01312 1 DKILEVGDYEKLEKRYPGAKHEFFPNGVLLPGLINAHTHLEFSANVAQFTYGRFRAWLLSVINSRDELLKQPWEEAIRQG 80 (381)
T ss_pred CeEEEECChHHHHhhcCCCeEEecCCcEEecCccccccccchhccccccCCCchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 6899999854322222456899999999999999999999654221 00 111 233
Q ss_pred HHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCC-hhhH-HHHHHHHH---cCCcEEEEe
Q 015826 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNA-SALEALLN---AGVLGLKSF 196 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~l~~l~~---~G~~~ik~~ 196 (399)
..+++++||||+.|+.. . .+.++...+ ..-+..+.+.... ..+.. .+.. +.++...+ ..-..++..
T Consensus 81 ~~E~l~~G~Tt~~d~~~-~------~~~~~a~~~-~GiR~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 151 (381)
T cd01312 81 IRQMLESGTTSIGAISS-D------GSLLPALAS-SGLRGVFFNEVIG-SNPSAIDFKGETFLERFKRSKSFESQLFIPA 151 (381)
T ss_pred HHHHHHhCCeEEEEecC-C------HHHHHHHHH-cCCcEEEEEeeEC-CCCchhhhhHHHHHHHHHHhhccCccceEEE
Confidence 45678999999999862 1 122222211 1112222222111 11111 0111 11222211 122235555
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhhc
Q 015826 197 MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGS 237 (399)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~ 237 (399)
++++. ...++++.++++.+.|+++|+++++|+ |+..+.
T Consensus 152 ~~p~a---~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~ 190 (381)
T cd01312 152 ISPHA---PYSVHPELAQDLIDLAKKLNLPLSTHFLESKEER 190 (381)
T ss_pred ECCCC---CcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHH
Confidence 55542 236789999999999999999999996 555543
No 97
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=99.65 E-value=3.6e-16 Score=112.74 Aligned_cols=68 Identities=35% Similarity=0.667 Sum_probs=49.0
Q ss_pred EEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCCCcCchHHHHHHHHcCCeeee
Q 015826 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTL 133 (399)
Q Consensus 63 V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv 133 (399)
|+|+||||++|++....+ .++.++||++|++|+|||||+|+|+..+.... .+.......++++|||||
T Consensus 1 V~I~~g~I~~v~~~~~~~--~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~~-~~~~~~~~~~l~~GvTTV 68 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSELP--ADAAEVIDAKGKYVMPGFIDMHTHLGEPGWQS-LDPETEAAAALAGGVTTV 68 (68)
T ss_dssp EEEETTEEEEEESSCCTT--STCCEEEEETTCEEEE-EEEEEE-TTTTCEGG-CTCHHHHHHHHHTTEEEE
T ss_pred CEEECCEEEEeCCCCCCC--CCCCEEEECCCCEEeCCeEeeeeccccccccc-cchhhHHHHHHCcceeeC
Confidence 789999999996544333 13567899999999999999999987432211 112456777889999997
No 98
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=99.65 E-value=3.9e-15 Score=148.04 Aligned_cols=179 Identities=16% Similarity=0.193 Sum_probs=97.8
Q ss_pred CccEEEEccEEEcCCCceeeEEEEEC-CEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCC---CC-----
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKE-GNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GR----- 112 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~d-G~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~----- 112 (399)
|..++++++.+.++ -..+++|+|+| |+|++||+.... + .++.+|++|||||||+|+|+.+. +.
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~~v~i~~~grI~~vg~~~~~----~---~~~~~g~~vlPGlVn~H~H~~~~~~rg~~~~~~ 73 (456)
T PRK09229 2 MTTLFAERALLPDG-WARNVRLTVDADGRIAAVEPGAAP----A---GAERLAGPVLPGMPNLHSHAFQRAMAGLTEVRG 73 (456)
T ss_pred chhHHHHHhhCCCc-cccCcEEEEecCCeEEEecCCCCC----c---cccccCcEEccCcccccccHhhHhhcCcccccC
Confidence 34556666666333 23578999999 999999985321 1 24568999999999999998633 10
Q ss_pred ------CCc-------------Cch----HHHHHHHHcCCeeeeecCcCCC-CC----CCCcHHHHHHHHHHHhccC-ce
Q 015826 113 ------TEW-------------EGF----PSGTKAAAAGGITTLIDMPLNS-DP----STISTETLKLKVDAAEKRI-YV 163 (399)
Q Consensus 113 ------~~~-------------e~~----~~~~~~al~~GvTtv~d~~~~~-~~----~~~~~~~~~~~~~~~~~~~-~~ 163 (399)
..| +++ ...+.+++++||||+.|+.+.. .+ .....+......+.....+ ..
T Consensus 74 ~~~~~l~~w~~~~~~~~~~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~GiR~ 153 (456)
T PRK09229 74 PPQDSFWSWRELMYRFALRLTPDQLEAIARQLYVEMLEAGYTSVGEFHYLHHDPDGTPYADPAEMALRIVAAARAAGIGL 153 (456)
T ss_pred CCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCcEEEeeeeeccCCCCCccCChHHHHHHHHHHHHHcCCEE
Confidence 001 111 1234567899999999975210 00 1111222233333332211 11
Q ss_pred eEE--eee--ee---eCC--------C-hhhHHHHHHHHH--cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 015826 164 DVG--FWG--GL---VPE--------N-AYNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKR 225 (399)
Q Consensus 164 ~~~--~~~--~~---~~~--------~-~~~~~~l~~l~~--~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~ 225 (399)
.++ .+. +. .+. . ....+..+++.+ .+-..+...++++. ...++++.++++++.| ++|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~s~e~l~~~~~~A-~~g~ 229 (456)
T PRK09229 154 TLLPVLYAHSGFGGQPPNPGQRRFINDPDGFLRLLEALRRALAALPGARLGLAPHS---LRAVTPDQLAAVLALA-APDG 229 (456)
T ss_pred EeceeeeecCCCCCCCCchhhcccccCHHHHHHHHHHHHHhhcCCCceEEEEeCCC---CCCCCHHHHHHHHHHh-cCCC
Confidence 111 110 00 000 0 011222223322 11123444445432 2367999999999999 9999
Q ss_pred CEEEecC
Q 015826 226 PLLVHAE 232 (399)
Q Consensus 226 ~v~~H~~ 232 (399)
++++|+.
T Consensus 230 ~i~~H~~ 236 (456)
T PRK09229 230 PVHIHIA 236 (456)
T ss_pred ceEEEeC
Confidence 9999983
No 99
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=99.64 E-value=1.3e-14 Score=145.46 Aligned_cols=122 Identities=19% Similarity=0.171 Sum_probs=75.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCC
Q 015826 206 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 285 (399)
Q Consensus 206 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~ 285 (399)
+.+++++++++++.|+++|+++++|+.....+.. .+..+.....+. ..
T Consensus 290 ~~~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~----------------------------~l~~~~~~~~~~----g~ 337 (479)
T cd01300 290 LLISPEELEELVRAADEAGLQVAIHAIGDRAVDT----------------------------VLDALEAALKDN----PR 337 (479)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEecHHHHHH----------------------------HHHHHHHHHHhc----CC
Confidence 4568999999999999999999999976432211 111111111211 11
Q ss_pred CCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCC--CC-cceEEcCCCCChhhHHHHHHHHhcCCc
Q 015826 286 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD--GD-TRFKCAPPIRDAANKEKLWEALMDGHI 362 (399)
Q Consensus 286 ~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~--~~-~~~~~~Pplr~~~~~~~l~~~l~~G~i 362 (399)
.+.+..+.|++.. +-+.++++++.| +.+++||+++.+..+.... .+ ...+..+| +.+.++.|..
T Consensus 338 ~~~r~~i~H~~~~--~~~~~~~l~~~g--v~~~~~P~~~~~~~~~~~~~~lg~~~~~~~~p---------~~~~~~~Gv~ 404 (479)
T cd01300 338 ADHRHRIEHAQLV--SPDDIPRFAKLG--VIASVQPNHLYSDGDAAEDRRLGEERAKRSYP---------FRSLLDAGVP 404 (479)
T ss_pred CCCCceeeecccC--CHHHHHHHHHcC--CceEeCcccccCchHHHHHhcccHHHHhcCch---------HHHHHHCCCe
Confidence 2567889998764 245666777777 5567899877654332111 01 12223333 4567788999
Q ss_pred cEEeCCCCCC
Q 015826 363 DMLSSDHSPT 372 (399)
Q Consensus 363 d~i~sdh~p~ 372 (399)
.+++||+.+.
T Consensus 405 v~lGSD~~~~ 414 (479)
T cd01300 405 VALGSDAPVA 414 (479)
T ss_pred eeccCCCCCC
Confidence 9999999543
No 100
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=99.62 E-value=2.9e-14 Score=141.51 Aligned_cols=84 Identities=19% Similarity=0.366 Sum_probs=56.6
Q ss_pred EEEccEEEcCCCc-eeeEEEEE-CCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCC---CCC-------
Q 015826 46 WLTSKRIVTPKGV-ISGAVEIK-EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT------- 113 (399)
Q Consensus 46 li~n~~vv~~~~~-~~~~V~I~-dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~~------- 113 (399)
.++|+++ +++. .+++|+|+ ||+|++||+..... +. .+..|++|||||||+|+|+.+. +..
T Consensus 5 ~~~~~~~--~~~~~~~~~i~I~~~g~I~~vg~~~~~~---~~---~~~~g~lvlPGfVn~H~H~~~~~~rg~~~~~~~~~ 76 (455)
T TIGR02022 5 WAERALL--PDGWAEGVRIAVAADGRILAIETGVPAA---PG---AERLSGPLLPGLANLHSHAFQRAMAGLAEVAGSGG 76 (455)
T ss_pred hHHhccC--CCccccCceEEEecCCEEEEecCCCCcc---cc---cccCCCEEccCCcccCcchhhHhhcCCcccccCCC
Confidence 3566665 3443 46899999 99999999854321 12 2346899999999999999653 110
Q ss_pred ----Cc-------------CchH----HHHHHHHcCCeeeeecCc
Q 015826 114 ----EW-------------EGFP----SGTKAAAAGGITTLIDMP 137 (399)
Q Consensus 114 ----~~-------------e~~~----~~~~~al~~GvTtv~d~~ 137 (399)
.| ++++ ....+++++||||++|+.
T Consensus 77 ~~l~~w~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~ 121 (455)
T TIGR02022 77 DSFWTWRELMYRFVDRLTPEQLQAIARQLYVEMLEAGFTRVGEFH 121 (455)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEeee
Confidence 01 1221 234567899999999975
No 101
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=99.62 E-value=1.4e-14 Score=139.79 Aligned_cols=184 Identities=17% Similarity=0.175 Sum_probs=113.8
Q ss_pred EEEEccEEEcCCCce-eeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCC-------CCcC
Q 015826 45 YWLTSKRIVTPKGVI-SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR-------TEWE 116 (399)
Q Consensus 45 ~li~n~~vv~~~~~~-~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-------~~~e 116 (399)
++|+|++|+++++.. +++|.|+||||++|++....+ .+.++||++|++|+|||||+|+|...... .+.+
T Consensus 2 ~~i~n~~i~~~~~~~~~~~v~IedgkI~~I~~~~~~~---~~~~~ID~~G~~l~PG~ID~HvHG~~g~~~~~~~~~~~~~ 78 (382)
T PRK11170 2 YALTNGRIYTGHEVLDDHAVVIADGLIEAVCPVAELP---PGIEQRDLNGAILSPGFIDLQLNGCGGVQFNDTAEAISVE 78 (382)
T ss_pred EEEEeeEEECCCCeEeCCEEEEECCEEEEecCCccCC---CCCeEEeCCCCEEccceeeeeecCccCcccccCccCCCHH
Confidence 679999999998765 579999999999998753322 24479999999999999999999753211 1335
Q ss_pred chHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeee--eeCC------Chh-----hHHHHH
Q 015826 117 GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG--LVPE------NAY-----NASALE 183 (399)
Q Consensus 117 ~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~-----~~~~l~ 183 (399)
+++..++.++++|||+++... .+.+.....+.++...+.....+...+++|.. +... +++ ..++++
T Consensus 79 ~l~~~~~~~~~~GvTt~lpT~-it~~~~~~~~~l~~~~~~~~~~~a~~~G~HlEGPfi~~~~~Gah~~~~~~~p~~~~~~ 157 (382)
T PRK11170 79 TLEIMQKANEKSGCTSFLPTL-ITSSDELMKQAVRVMREYLAKHPNQALGLHLEGPYLNLVKKGTHNPEFIRKPDAEMVD 157 (382)
T ss_pred HHHHHHHHHHhcCEeEEeeec-cCCCHHHHHHHHHHHHHHHhcCCCeEEEEEeecCCCCcccCCCCCHHHhcCcCHHHHH
Confidence 566777788999999999876 33332222333333333222334456665542 1111 011 245677
Q ss_pred HHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEE-ec-CChhhchhHHh
Q 015826 184 ALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV-HA-EMEKGSERHVK 242 (399)
Q Consensus 184 ~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~-H~-~~~~~~~~~~~ 242 (399)
.+.+.. ..+|.....+ -.. .. ++++.+++.|+.+.+ |. .+.+.+...+.
T Consensus 158 ~~~~~~-~~i~~iTlAP------E~~--~~-~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~ 208 (382)
T PRK11170 158 FLCENA-DVITKVTLAP------EMV--DA-EVIRKLVEAGIVVSAGHSNATYEEAKAGFR 208 (382)
T ss_pred HHHhcc-CCEEEEEECC------CCC--cH-HHHHHHHHCCcEEEeeCCcCCHHHHHHHHH
Confidence 776653 3466543221 111 12 567778888988874 65 34444444443
No 102
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=99.60 E-value=7.6e-14 Score=128.38 Aligned_cols=172 Identities=24% Similarity=0.324 Sum_probs=132.0
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCC-------CCCCcEEeCCCCEEecceeecccccCCCCCCC
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRN-------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE 114 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~-------~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~ 114 (399)
..|++|.|+.|+|-.++..+||.|+||||++||+...+... .+..++|-++|++|.-|-||+|+|+-.|
T Consensus 66 ~~D~VITNa~IiD~~Gi~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHfI~P---- 141 (568)
T COG0804 66 ALDLVITNALIIDYWGIVKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHFICP---- 141 (568)
T ss_pred cccEEEeeeEEEeccceEEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEEecH----
Confidence 46899999999999999999999999999999976432211 1356789999999999999999998754
Q ss_pred cCchHHHHHHHHcCCeeeeecCcCCCCCCC--------CcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHH
Q 015826 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPST--------ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL 186 (399)
Q Consensus 115 ~e~~~~~~~~al~~GvTtv~d~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 186 (399)
.....||.+|+||++.... -|.. ..+-.+.+.++.+.. ..+|+++.+- ++......+.+++
T Consensus 142 -----qqi~~Al~sGiTtmiGGGt--Gpa~Gt~aTT~TpG~w~i~rMl~a~d~-~p~N~g~lgK---Gn~s~~~~L~Eqi 210 (568)
T COG0804 142 -----QQIEEALASGITTMIGGGT--GPADGTNATTCTPGPWHIARMLQAADG-LPMNIGFLGK---GNASNPAPLAEQI 210 (568)
T ss_pred -----HHHHHHHhcCcEEEecCcc--CCCCCcccccccCCHHHHHHHHHhhhc-CceeeEEeec---CCCCCchhHHHHH
Confidence 3567899999999987641 1211 123456666666653 4578887653 3444456789999
Q ss_pred HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015826 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (399)
Q Consensus 187 ~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 235 (399)
++|+.++|+.-. .-.++..+..++..|.++++.|.+|...-.
T Consensus 211 ~aGa~GlKlHED-------WG~TpaaI~~~L~VAD~~DvqVaiHtDTLN 252 (568)
T COG0804 211 EAGAIGLKLHED-------WGATPAAIDTCLSVADEYDVQVAIHTDTLN 252 (568)
T ss_pred hhccceeEeecc-------cCCCHHHHHHHHhhhhhhceEEEEeecccc
Confidence 999999998632 246889999999999999999999987643
No 103
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.57 E-value=2.9e-13 Score=121.69 Aligned_cols=149 Identities=24% Similarity=0.292 Sum_probs=96.3
Q ss_pred EEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCC-----CCcC---c
Q 015826 46 WLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR-----TEWE---G 117 (399)
Q Consensus 46 li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-----~~~e---~ 117 (399)
++.|++|+..+.+.++.|.|+||+|..|.+.... -...+|++|.+++|||||+|+-.-+..+ -.|. .
T Consensus 2 ~lsnarivl~D~v~~gsv~i~DG~Ia~i~~g~s~-----~~~~~d~eGd~LLPGlIeLHtD~lE~~~~PRPgV~wp~~aA 76 (377)
T COG3454 2 ILSNARIVLEDRVVNGSVLIRDGLIADIDEGISP-----LAAGIDGEGDYLLPGLIELHTDNLERFMTPRPGVRWPPIAA 76 (377)
T ss_pred ccccceEEeecceeeeeEEEecceEeeeccccCc-----ccccccCCCCeecccchhhcchhhhcccCCCCCCCCCchHH
Confidence 5789999999998899999999999999876532 1357999999999999999995432211 1122 2
Q ss_pred hHHHHHHHHcCCeeeeecCcC--CCCCCCCcHHHHHHHHHHH-----hccCceeEEeeeeeeCCChhhHHHHHHHHHcCC
Q 015826 118 FPSGTKAAAAGGITTLIDMPL--NSDPSTISTETLKLKVDAA-----EKRIYVDVGFWGGLVPENAYNASALEALLNAGV 190 (399)
Q Consensus 118 ~~~~~~~al~~GvTtv~d~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 190 (399)
+...-+..+.+|+|||+|.-. .........+.+.+.++.. ++....|-.++....-.....++.++++...+.
T Consensus 77 i~ahD~~l~~sGITTv~dal~iGd~~~gg~r~~~~~~midaI~~~~~~g~lradHr~HlRcEvs~~~~l~~~e~~~~~p~ 156 (377)
T COG3454 77 ILAHDAQLAASGITTVLDALAIGDVRDGGLRLENLRKMIDAIEEAQAAGRLRADHRLHLRCEVSHPATLPLFEDLMDHPR 156 (377)
T ss_pred HHHhhHHHHhcChhhHHhhhhcCcccCCccchHHHHHHHHHHHHHHhccchhhccceeeeeecCChhHHHHHHHHhcCCC
Confidence 334456778999999998641 1111122233444444333 223334544554443344556788888888776
Q ss_pred cEEEEeecC
Q 015826 191 LGLKSFMCP 199 (399)
Q Consensus 191 ~~ik~~~~~ 199 (399)
..+...|..
T Consensus 157 v~LiSlMDH 165 (377)
T COG3454 157 VKLISLMDH 165 (377)
T ss_pred eeEEEecCC
Confidence 555444543
No 104
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=99.57 E-value=4.6e-13 Score=131.50 Aligned_cols=236 Identities=19% Similarity=0.225 Sum_probs=136.0
Q ss_pred EEccEEEcCCCc---eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCC-----CcCch
Q 015826 47 LTSKRIVTPKGV---ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-----EWEGF 118 (399)
Q Consensus 47 i~n~~vv~~~~~---~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~-----~~e~~ 118 (399)
|+|++|+++.+. .+++|.|+||+|++|++.. + +.++||++|++|+|||||+|+|+...... ..|+.
T Consensus 1 Ikng~V~d~~~~~~~~~~dI~IedGkIv~Vg~~~--~----~~~vID~~G~~VmPGfID~HtH~~gg~~~~~r~~~pe~~ 74 (541)
T cd01304 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVESSSGA--K----PAKVIDASGKVVMAGGVDMHSHIAGGKVNVGRILRPEDH 74 (541)
T ss_pred CEEEEEEcCCCcccccccEEEEECCEEEEEccCC--C----CCeEEECCCCEEECCeeeeeeCccccccccccccChhhh
Confidence 579999998653 4689999999999998642 1 35799999999999999999999654211 11111
Q ss_pred H----------------------HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeC---
Q 015826 119 P----------------------SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP--- 173 (399)
Q Consensus 119 ~----------------------~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 173 (399)
+ ......++-|.||+++... |+...+. ..+.......+|-+.+.-+..
T Consensus 75 ~~~~~~~~~~~~~~~g~~~pst~~tgy~ya~mGytt~~e~a~---~p~~a~h----~h~e~~~~p~~d~~~~~~~gnn~~ 147 (541)
T cd01304 75 RRDPVPKGALRRAGVGFSVPSTLATGYRYAEMGYTTAFEAAM---PPLNARH----THEEMADTPILDKGAYPLLGNNWF 147 (541)
T ss_pred hccccccccccccCCCccCCCchHhhhHHHhcCcceeecccC---Ccccchh----hhHHhccCccccccceEEecchHH
Confidence 1 0112345778999987651 2222222 222233334445443322111
Q ss_pred -------CChh-hHHHHHHHHH-cCCcEEEEeecCCCC----------------CCCCCCCHHHHHHHHHHHHhcCCCEE
Q 015826 174 -------ENAY-NASALEALLN-AGVLGLKSFMCPSGI----------------NDFPMTNASHIKEGLSVLARYKRPLL 228 (399)
Q Consensus 174 -------~~~~-~~~~l~~l~~-~G~~~ik~~~~~~~~----------------~~~~~~~~~~l~~~~~~a~~~g~~v~ 228 (399)
...+ ..+.+.-+++ ....++|+. .+.|. +++...+.+.++.+.+...++|+|..
T Consensus 148 ~~~~~~~~~~~~~~~~vaw~l~~tk~~giK~v-npgG~~a~~~~~~~~~~d~~~~~~~vtp~~ii~~l~~~~~~lg~ph~ 226 (541)
T cd01304 148 VLEYLRDGDMEKLAAYVAWTLKASKGYGIKVV-NPGGTEAWGWGQNVLSLDDPVPYFDITPREILKGLAEANEELGLPHS 226 (541)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccceEEEEE-CCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCceE
Confidence 1111 1122222333 356678874 22221 12334456777888888888998876
Q ss_pred EecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC----------Ch
Q 015826 229 VHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS----------DA 298 (399)
Q Consensus 229 ~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s----------~~ 298 (399)
+|.+...+ ..|.. .| ...+.+.+++.....- ..-.+|+.|+. ..
T Consensus 227 iH~h~nnl-----------g~pgn-----------~~--~t~~t~~~~~~~~~~~--~~~~~h~tH~qfhsyg~~~~~~~ 280 (541)
T cd01304 227 IHVHCNNL-----------GVPGN-----------YE--TTLETMKAAEGVKPDP--RRQVLHLTHVQFHSYGGTSWRDF 280 (541)
T ss_pred EEEccccC-----------CCCCc-----------HH--HHHHHHHHhhcCCCcc--ccceeEeeeeeEEeeccCCcccH
Confidence 66542211 01111 22 3355667766430000 00148999984 11
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccc
Q 015826 299 SSSLDLLMEAKTNGDSITVETCPH 322 (399)
Q Consensus 299 ~~~l~~i~~ak~~G~~vt~e~~p~ 322 (399)
....+.|.++..++.+||+|+.+.
T Consensus 281 ~s~a~~i~~~~n~~~~it~D~G~v 304 (541)
T cd01304 281 ESGAERIADYVNANDHVTIDVGQV 304 (541)
T ss_pred hHHHHHHHHHHHcCCCEEEEeCce
Confidence 256788889999999999999874
No 105
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=99.57 E-value=6.4e-13 Score=131.13 Aligned_cols=176 Identities=21% Similarity=0.241 Sum_probs=104.2
Q ss_pred EEEEccEEEcCCCc---eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCC-C----CcC
Q 015826 45 YWLTSKRIVTPKGV---ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR-T----EWE 116 (399)
Q Consensus 45 ~li~n~~vv~~~~~---~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-~----~~e 116 (399)
++|+|++|+++.+. ..++|.|+||+|++|++..+ . +.++||++|++|+|||||+|+|+..+.. . ..+
T Consensus 2 ~iIkng~I~dp~~~~~~~~~dI~IedGkIveIg~~~~-~----~~eVIDa~G~vVmPGfID~HvHg~gG~~~~~R~~~pE 76 (556)
T TIGR03121 2 ILIKNGTVYDPANGIDGEVMDIFIRDGKIVEPVSGGT-K----PAKVIDASGKLVMAGGVDSHTHIAGPKVNVGRLLRPE 76 (556)
T ss_pred EEEEeEEEEcCCCCccccccEEEEECCEEEEecCCCC-C----CCeEEECCCCEEEeCEEeeeECCCccccccccccCHH
Confidence 57999999998653 24899999999999986432 1 3479999999999999999999986411 0 011
Q ss_pred c----------------------hHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeC-
Q 015826 117 G----------------------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP- 173 (399)
Q Consensus 117 ~----------------------~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 173 (399)
+ ........++.|+||++|... |+...+. ..+.......+|-+.+.-+..
T Consensus 77 ~~~~~~~~~~~~~r~Gtt~~lPTt~tt~y~ya~mGyTt~~eaa~---~p~~arh----~h~e~~~~p~~d~~~~~~~gnn 149 (556)
T TIGR03121 77 DHRRDPEPRTGLTRAGSGFSVPSTYATGYRYARMGYTTVFEAAV---PPLNARH----THEEFADTPILDKGGYTLLGNN 149 (556)
T ss_pred HHhhcchhhhhhcCCCcceEehhHhHHHHHHHhCCccEEecCCC---Cccchhh----hHHHhccCccccccceEEecch
Confidence 1 112235568899999998862 3222222 222333334455443322111
Q ss_pred ---------CChh-hHHHHHHHHH-cCCcEEEEeecCCCC----------------CCCCCCCHHHHHHHHHHHHhcCCC
Q 015826 174 ---------ENAY-NASALEALLN-AGVLGLKSFMCPSGI----------------NDFPMTNASHIKEGLSVLARYKRP 226 (399)
Q Consensus 174 ---------~~~~-~~~~l~~l~~-~G~~~ik~~~~~~~~----------------~~~~~~~~~~l~~~~~~a~~~g~~ 226 (399)
+..+ ..+.+.-+++ ....++|+. .+.|. +++...+.+.++.+.+...++|+|
T Consensus 150 ~~~~~~~~~~~~~~~~~~vaw~l~~tk~~giK~v-npgG~~a~~~~~~~~~~d~~~~~~~vtp~~i~~~l~~~~e~l~lp 228 (556)
T TIGR03121 150 WFLLEYLKDGEPEKAAAYVAWLLKATKGYGIKVV-NPGGVEAWGWGENVLSLDDPVPYFGITPREIIKGLARANEELGLP 228 (556)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccceEEEEE-CCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 1111 1122232333 356678874 22221 123334566677777777788986
Q ss_pred --EEEecCC
Q 015826 227 --LLVHAEM 233 (399)
Q Consensus 227 --v~~H~~~ 233 (399)
+++||.+
T Consensus 229 h~~h~H~nn 237 (556)
T TIGR03121 229 HSIHVHCNN 237 (556)
T ss_pred ceEEEecCC
Confidence 6666655
No 106
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.49 E-value=7.9e-13 Score=121.86 Aligned_cols=212 Identities=25% Similarity=0.312 Sum_probs=124.5
Q ss_pred eeecccccCCCCCCC------------------cCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC
Q 015826 100 LIDVHAHLDDPGRTE------------------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI 161 (399)
Q Consensus 100 lID~H~H~~~~~~~~------------------~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (399)
|||+|+|+..+.... ..+.......++++||||++++. ...+.....+.+....+......
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMG-STPPPTTTKAAIEAVAEAARASA 79 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeE-eecCccccchHHHHHHHHHHHhc
Confidence 799999997653221 12244566788999999999987 33222222233444444433221
Q ss_pred ceeEEeeeeeeCCC--------hhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 162 YVDVGFWGGLVPEN--------AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 162 ~~~~~~~~~~~~~~--------~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
.+...+..+..+.. ....+.+.+..+.|+.+++.+..... ...+.+.++++++.|+++|+++.+|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~i~~H~~~ 155 (275)
T cd01292 80 GIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGLKLAGPYTA----TGLSDESLRRVLEEARKLGLPVVIHAGE 155 (275)
T ss_pred CeeeEEeccCCCCccccchhHHHHHHHHHHHHHhcCCeeEeeCCCCCC----CCCCcHHHHHHHHHHHHcCCeEEEeeCC
Confidence 22332222222211 11234444444457888887543321 1147899999999999999999999865
Q ss_pred hhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCC
Q 015826 234 EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD 313 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~ 313 (399)
.... ...+.++++.... +.++.+.|.... .-+.++..++.
T Consensus 156 ~~~~----------------------------~~~~~~~~~~~~~--------~~~~~~~H~~~~--~~~~~~~~~~~-- 195 (275)
T cd01292 156 LPDP----------------------------TRALEDLVALLRL--------GGRVVIGHVSHL--DPELLELLKEA-- 195 (275)
T ss_pred cccC----------------------------ccCHHHHHHHHhc--------CCCEEEECCccC--CHHHHHHHHHc--
Confidence 4310 0022334444321 457899999863 12334444444
Q ss_pred CEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCC
Q 015826 314 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 372 (399)
Q Consensus 314 ~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~ 372 (399)
.+++++||++..... +....+..+++.++.|...+++||+.+.
T Consensus 196 g~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~~~lgTD~~~~ 238 (275)
T cd01292 196 GVSLEVCPLSNYLLG----------------RDGEGAEALRRLLELGIRVTLGTDGPPH 238 (275)
T ss_pred CCeEEECCccccccc----------------CCcCCcccHHHHHHCCCcEEEecCCCCC
Confidence 577888997654321 2233456678889999999999999775
No 107
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.47 E-value=3.9e-12 Score=125.24 Aligned_cols=136 Identities=23% Similarity=0.316 Sum_probs=98.4
Q ss_pred eCCCCEEecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeee
Q 015826 90 DYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169 (399)
Q Consensus 90 D~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (399)
|++|++|+|||||+|+|+..++.. ....++.++.+||||+++++ +..+.....+.++..++... +..+++.+..
T Consensus 1 Da~G~~v~PG~ID~H~Hi~~~~~~----~~~~~~~a~~~GvTtvv~~p-~~~~~v~g~~~~~~~~~~a~-~~p~~~~~~~ 74 (422)
T cd01295 1 DAEGKYIVPGFIDAHLHIESSMLT----PSEFAKAVLPHGTTTVIADP-HEIANVAGVDGIEFMLEDAK-KTPLDIFWML 74 (422)
T ss_pred CCCCCEEccCEEEccCCcCCCCCC----hHHHHHHHHCCCcEEEEeCC-CCCCcCCCHHHHHHHHHHHh-CCCceEEEeC
Confidence 789999999999999999876542 34467899999999999998 44455566778887777543 3344554333
Q ss_pred ee-eCCCh-----h--hHHHHHHHHH-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015826 170 GL-VPENA-----Y--NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (399)
Q Consensus 170 ~~-~~~~~-----~--~~~~l~~l~~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 235 (399)
.. .+... . ..++++++.+ .|+.+++.+|.+++. ..+++.+.+.++.|+++|+++.+|+....
T Consensus 75 p~~vp~t~~e~~g~~~~~~~i~~l~~~~~vvglgE~md~~~v----~~~~~~l~~~i~~A~~~g~~v~~Ha~g~~ 145 (422)
T cd01295 75 PSCVPATPFETSGAELTAEDIKELLEHPEVVGLGEVMDFPGV----IEGDDEMLAKIQAAKKAGKPVDGHAPGLS 145 (422)
T ss_pred CCcCCCCCCCCCCCcCCHHHHHHHhcCCCCcEEEEeccCccc----cCCcHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 21 11010 1 3677888877 499999988765421 34667899999999999999999996543
No 108
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.41 E-value=8.4e-13 Score=123.01 Aligned_cols=256 Identities=20% Similarity=0.195 Sum_probs=133.6
Q ss_pred eeEEEEEC-CEEEEeccCCCCCC-------CCCCCcEEeCCCCEEecceeeccccc-CCC-----CC-------------
Q 015826 60 SGAVEIKE-GNIISIVSEEDWPR-------NSKTGQVVDYGEAVIMPGLIDVHAHL-DDP-----GR------------- 112 (399)
Q Consensus 60 ~~~V~I~d-G~I~~Ig~~~~~~~-------~~~~~~vID~~G~~vlPGlID~H~H~-~~~-----~~------------- 112 (399)
+..+.|.| |||+.|++....+. ..+..++++.+|+++||||||+|+|. .+- +.
T Consensus 27 ~~sl~Vd~~GKi~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~mPGfVdtH~H~a~q~~~s~~g~d~pll~wl~~~~f 106 (439)
T KOG3968|consen 27 GSSLGVDDTGKIVFIGKAYFDENKLKGEGVEKENTKIKLSSGHFLMPGFVDTHIHPAHQFAMSGAGTDMPLLQWLGKYTF 106 (439)
T ss_pred CcceeecCCccEEEeeccccchhhhcccccccccceeeecCCcEEecceeecccchHhhhhhhccccCcHHHHHhhccee
Confidence 45678887 99999997643321 01345789999999999999999993 111 10
Q ss_pred ------CCcCc----hHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCce-----eEEeeee--eeCCC
Q 015826 113 ------TEWEG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYV-----DVGFWGG--LVPEN 175 (399)
Q Consensus 113 ------~~~e~----~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~ 175 (399)
...++ +....+.++++|+||+..+. ..+ ..+...+.+.......+..+ +...+.. .....
T Consensus 107 ~le~~~~~~e~~~q~~~~vv~~mL~~GTTt~~~f~-~~~--~~s~~ll~~~~~~~G~R~~igkv~m~~~~~~~p~~~~~~ 183 (439)
T KOG3968|consen 107 PLEATFTNEEDARQVYQRVVKEMLRAGTTTVEYFS-TLH--LDSELLLARAAIRAGQRALIGKVCMDCNAHAVPKGVETT 183 (439)
T ss_pred ecchhhhhHHHHHHHHHHHHHHHHHcCceehhhhh-ccC--chhHHHHHHHHHHhCCceeeeeehhccCCCCCCccchhH
Confidence 00012 22345788999999998765 111 11112222222222122211 1111000 01111
Q ss_pred hhhHHHHHHH-------HHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhhchhHHhhccCc
Q 015826 176 AYNASALEAL-------LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGSERHVKLEDDT 247 (399)
Q Consensus 176 ~~~~~~l~~l-------~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~~~~~~~~~~~ 247 (399)
++.++..+++ .+.+...+. .+ .-.+.|+.+.+....+.|+.++++++.|. ++.+++.-...-...+
T Consensus 184 E~si~~t~~~i~~~~~~~~~~~~~~v---t~---~fa~~c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~ 257 (439)
T KOG3968|consen 184 EESIESTEDLIPKLEKLKREKVNPIV---TP---RFAASCSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEK 257 (439)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCcc---cc---cccCCCcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhhc
Confidence 1222222222 223332211 11 12346788888888899999999999996 6666544222111100
Q ss_pred CCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccc
Q 015826 248 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 327 (399)
Q Consensus 248 ~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~ 327 (399)
..+ .........+..+ .+-.|.+|+++ +.++++.+. | ..+..||-
T Consensus 258 ~~y---------------~~~yd~~~lL~~k--------tvlaH~~hl~d--~ei~~l~k~---g--~svshCP~----- 302 (439)
T KOG3968|consen 258 LSY---------------TDVYDKGGLLTEK--------TVLAHLEHLSD--EEIELLAKR---G--CSVSHCPT----- 302 (439)
T ss_pred ccc---------------hHHHHHhcccchH--------hHhhhheecCc--hhHHHHHhc---C--CceEECCc-----
Confidence 100 0111111112211 23468999988 567777665 3 44556773
Q ss_pred cccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCCC
Q 015826 328 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV 373 (399)
Q Consensus 328 ~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~~ 373 (399)
++.+-..| .| .+.+.|..|.+..+|||-++++
T Consensus 303 Sn~~L~sG-----~~---------~vr~lL~~~v~VgLGtDv~~~s 334 (439)
T KOG3968|consen 303 SNSILGSG-----IP---------RVRELLDIGVIVGLGTDVSGCS 334 (439)
T ss_pred chhhhccC-----Cc---------cHHHHHhcCceEeecCCccccc
Confidence 11110111 12 3556788899999999999765
No 109
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=7.6e-11 Score=110.46 Aligned_cols=86 Identities=31% Similarity=0.549 Sum_probs=70.3
Q ss_pred EEEEccEEEcCCCce-eeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCC----CCcCchH
Q 015826 45 YWLTSKRIVTPKGVI-SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR----TEWEGFP 119 (399)
Q Consensus 45 ~li~n~~vv~~~~~~-~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~----~~~e~~~ 119 (399)
..++|++|+++.+.. ++.|.|+||+|.+|.+ .+.+ ...++||.+|.+|+|||||+|+|...... .+.+++.
T Consensus 2 ~~~~~~~i~t~~~~~~~~~v~i~dg~I~~i~~-~~~p---~~~e~id~~G~~l~PGfID~hihG~gG~~~~D~~~~~~l~ 77 (380)
T COG1820 2 YALKNGRIFTGHGVLDGGAVVIEDGKIEAVVP-AELP---ADAEIIDLKGALLVPGFIDLHIHGGGGADFMDAGSVETLE 77 (380)
T ss_pred ceeeccEEEcCcceEECcEEEEcCCEEEEEec-CcCC---CcceeecCCCCEecccEEEEeecCcCcccccCccCHHHHH
Confidence 368999999999976 5699999999999998 2232 36789999999999999999999875422 2334566
Q ss_pred HHHHHHHcCCeeeee
Q 015826 120 SGTKAAAAGGITTLI 134 (399)
Q Consensus 120 ~~~~~al~~GvTtv~ 134 (399)
..++..++.|||+++
T Consensus 78 ~i~~~~~~~GtTsfL 92 (380)
T COG1820 78 TMAEAHLRHGTTSFL 92 (380)
T ss_pred HHHHHhhhcCeeeee
Confidence 778888999999997
No 110
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=99.31 E-value=3.2e-11 Score=112.54 Aligned_cols=239 Identities=26% Similarity=0.279 Sum_probs=122.9
Q ss_pred eCCCCEEecceeecccc--cCCC--CCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeE
Q 015826 90 DYGEAVIMPGLIDVHAH--LDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV 165 (399)
Q Consensus 90 D~~G~~vlPGlID~H~H--~~~~--~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (399)
|++|++|+|||||+|+| .... +....+.....++.++.+|+|++++++ +. ....+...... ....
T Consensus 1 D~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~~~~-~~-----~~~~~~~~~~~-----~~~~ 69 (304)
T PF13147_consen 1 DASGKYVLPGLIDLHVHGPLGRSEDGAPWAEQAAAASAAALAGGVTTVVDMP-GT-----NPEELNRARRR-----GAGY 69 (304)
T ss_dssp E-TTSEEEE-EEEEEEECCSSCETTTEEHSSHHHHHHHHHHHTTEEEEEESS-SS-----SHHHHHHHHHH-----ESEE
T ss_pred CCCCCEEccceeeeeeCCCcCCCCCCccchhhHHHHHHHHHhCCEeEEecCC-CC-----CchhhHHHHhh-----cccc
Confidence 89999999999999999 2221 111223445667888999999999865 21 22222222222 1111
Q ss_pred EeeeeeeCCChhh---HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CEEEecCChhhchhHH
Q 015826 166 GFWGGLVPENAYN---ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKR-PLLVHAEMEKGSERHV 241 (399)
Q Consensus 166 ~~~~~~~~~~~~~---~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~-~v~~H~~~~~~~~~~~ 241 (399)
..... ...... .+.+......+. .+..... .......+.+..+.+++.|. .+..|+... ......
T Consensus 70 ~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 138 (304)
T PF13147_consen 70 PGSGA--GPRGTTIEELEALVDLIAAEG--VGFVAAY------NGIEGPGLQAAIRAAHRAGVIKVVGHSPAD-GIEGAI 138 (304)
T ss_dssp EEECE--SCCHHHHHHHHHHHHHHHHTE--EEEESSS------THHHHHHHHHHHHHHHHHTHEEEEEECHHH-HHHHHH
T ss_pred ccccc--cccccchHHHHHHHHHHhhcC--cceeecc------ccCCHHHHHHHHHHHHhcCCeeeecccchh-hHHHHH
Confidence 11111 111122 233333333333 2322211 12456788888889999994 444455333 211111
Q ss_pred hhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccc
Q 015826 242 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCP 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p 321 (399)
.... ... ... ................... +..+++...... ...+.+...+..++..+...
T Consensus 139 ~~~~-----~~~-~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-- 199 (304)
T PF13147_consen 139 AEGL-----DAM-EHI---LPHEVAEALHLAEALAQGA-------GPGLHCHVASDD-ATAEGVAIAHGFGLPPTPLH-- 199 (304)
T ss_dssp HHHH-----HTT-HHS---THHHHHHHHHHHHHHHHHH-------THCEEEEETSSH-HHHHHHHHHHHTTHEEEEEE--
T ss_pred Hhcc-----cch-hhh---hhhhHHHHHHHHHHhhhcc-------ccchhhhhhhhh-hhhHHHHHHHhhccccchHH--
Confidence 1100 000 000 1111122222222233222 445555555554 33332555555665554443
Q ss_pred cccccccccCCCCCcceEEcCCCC--ChhhHHHHHHHHhcCCccEEeCCCCCCC
Q 015826 322 HYLAFSAEEIPDGDTRFKCAPPIR--DAANKEKLWEALMDGHIDMLSSDHSPTV 373 (399)
Q Consensus 322 ~~L~~~~~~~~~~~~~~~~~Pplr--~~~~~~~l~~~l~~G~id~i~sdh~p~~ 373 (399)
.+.-..... +..++++||++ ....+..+++.++.|+..+++|||.++.
T Consensus 200 -~~~~~~~~~---~~~~~~~p~~~~~~~~~~~~~~~l~~~Gv~~~l~sD~~~~~ 249 (304)
T PF13147_consen 200 -LLARDAAAA---GIRFKVLPPLRLDLREDRAALRELLEAGVPVALGSDHAPSS 249 (304)
T ss_dssp -HHHHHHHHH---GGGGEESSCHHHHTHHHHHHHHHHHHTTSSEEEEE-BBTTT
T ss_pred -hhHHHHHhc---CceeeeCCCccccchhhhHHHHHHHhCCCeEEEEcCCcccc
Confidence 111111111 46789999999 9999999999999999999999999874
No 111
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.25 E-value=2.2e-10 Score=110.46 Aligned_cols=68 Identities=34% Similarity=0.497 Sum_probs=50.9
Q ss_pred CCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCCCC----------CcC-------------chHHHHH
Q 015826 67 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT----------EWE-------------GFPSGTK 123 (399)
Q Consensus 67 dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~----------~~e-------------~~~~~~~ 123 (399)
||||++|++....+ .+.++||++|++|+|||||+|+|++..... ... .......
T Consensus 1 ~gkI~~i~~~~~~~---~~~~vid~~g~~v~Pg~id~h~h~~~~~~~~~~~~~d~~e~~~~~~p~~~~~d~~~~~~~~~~ 77 (359)
T cd01309 1 DGKIVAVGAEITTP---ADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETDPVTPHVRAIDGINPDDEAFK 77 (359)
T ss_pred CCEEEEEcCCCCCC---CCCeEEeCCCCEEcCcEEecccccCccccCCCcCcCCccccCCCCCceeEeecccCCCCHhHH
Confidence 79999999865433 367899999999999999999999754211 000 1123467
Q ss_pred HHHcCCeeeeecCc
Q 015826 124 AAAAGGITTLIDMP 137 (399)
Q Consensus 124 ~al~~GvTtv~d~~ 137 (399)
.++++|||++...|
T Consensus 78 ~a~~~GvT~~~v~p 91 (359)
T cd01309 78 RARAGGVTTVQVLP 91 (359)
T ss_pred HHHhcCceEEEecC
Confidence 78999999998776
No 112
>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria.
Probab=99.23 E-value=8.9e-12 Score=97.85 Aligned_cols=140 Identities=26% Similarity=0.425 Sum_probs=95.1
Q ss_pred CCEEecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeee
Q 015826 93 EAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 172 (399)
Q Consensus 93 G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (399)
|++++|||||.|+|++.+|+..++.+.. |+..|| ++.|.. ..+.+.
T Consensus 1 ~kli~~g~vd~hVhlrepg~~~keti~t-----------T~~amp-nt~paP----------------a~itv~------ 46 (142)
T PF12890_consen 1 GKLILPGLVDVHVHLREPGFEAKETIET-----------TWCAMP-NTFPAP----------------AGITVE------ 46 (142)
T ss_pred Cceeehhhhhhhhhhhcccchhhhhhhc-----------eeeecC-ccCCCC----------------cceeee------
Confidence 6899999999999999998876655432 888898 776654 001110
Q ss_pred CCChhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchh
Q 015826 173 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (399)
Q Consensus 173 ~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 252 (399)
.... .+|. ++. ++........+.+.++. ++++.++..||+|++....+.++.++ . +..
T Consensus 47 ~~~~--------------e~~a--fsd---dg~giq~~~lm~eamk~-a~l~~~i~ahceDd~l~~~g~v~~ge-~-~q~ 104 (142)
T PF12890_consen 47 DDGE--------------EAFA--FSD---DGYGIQIQLLMYEAMKK-AELDQEIVAHCEDDELTNGGVVHDGE-L-PQF 104 (142)
T ss_pred ecCc--------------ceEE--Eec---CCceeeeHHHHHHHHHH-HHcccHHHHhhcccccccccccccch-h-hHH
Confidence 0000 0121 111 22233466778888888 88999999999999887777666541 1 222
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh
Q 015826 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 298 (399)
Q Consensus 253 ~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~ 298 (399)
+..++++ .+|..-+.+.+.+++++ |+..||+|+|+.
T Consensus 105 ~g~~L~G---~cEs~~~~rd~lLak~~-------g~~yhVchvstk 140 (142)
T PF12890_consen 105 LGVYLKG---NCESVQCARDVLLAKAT-------GCHYHVCHVSTK 140 (142)
T ss_pred hCCcCCC---cchHHHHHHHHHhhhcc-------CCcEEEEEEecc
Confidence 2222333 67888899999999975 999999999986
No 113
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=99.13 E-value=1.2e-09 Score=101.27 Aligned_cols=64 Identities=19% Similarity=0.350 Sum_probs=52.6
Q ss_pred CccEEEEccEEEcCCCc---eeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCC
Q 015826 42 YNQYWLTSKRIVTPKGV---ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~---~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~ 110 (399)
++.++|+||-|+||-.. ...||.|+||||+.-..-.+ ...+|||++|++||||-||.|+|+..+
T Consensus 2 ~~e~~IKNg~V~dPlngingE~MDI~vkdGKIVe~sev~~-----~~aKVIDA~gklvm~GGvD~HsHvAG~ 68 (575)
T COG1229 2 AMEILIKNGIVYDPLNGINGEKMDICVKDGKIVEESEVSE-----SKAKVIDASGKLVMPGGVDSHSHVAGA 68 (575)
T ss_pred CceEEeecCEEecCccCCCCceeeEEeecCeEeeeccccc-----ccceEEeccCcEEecCccccccccccc
Confidence 46799999999998653 47899999999987643221 136899999999999999999999764
No 114
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=99.05 E-value=2.7e-09 Score=98.43 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCCEEEecCC
Q 015826 213 IKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 213 l~~~~~~a~~~g~~v~~H~~~ 233 (399)
++++++.|+++|+++++|+..
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e 147 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASE 147 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCC
Confidence 999999999999999999854
No 115
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=99.00 E-value=3.8e-08 Score=92.66 Aligned_cols=211 Identities=20% Similarity=0.216 Sum_probs=112.2
Q ss_pred ecceeecccccCCCCCC-----Cc---CchHHHHHHHHcCCeeeeecCcCCC-CCCC-CcHHHHHHHHHHH---h--ccC
Q 015826 97 MPGLIDVHAHLDDPGRT-----EW---EGFPSGTKAAAAGGITTLIDMPLNS-DPST-ISTETLKLKVDAA---E--KRI 161 (399)
Q Consensus 97 lPGlID~H~H~~~~~~~-----~~---e~~~~~~~~al~~GvTtv~d~~~~~-~~~~-~~~~~~~~~~~~~---~--~~~ 161 (399)
+|||||+|+-..+.-.. .| ..+...-++.+.+||||+++.-+-. .... ...+......+.. . +..
T Consensus 1 lPG~vdlH~D~~E~~~~PRp~v~~~~~~a~~~~d~~~~a~GiTT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (325)
T cd01306 1 LPGLIDLHTDNLEKHVMPRPGVDWPMDIALAAHDRQLAAAGITTVFDALSFGDEEGGRRRLRNLRKLIDAIRELHARGVL 80 (325)
T ss_pred CCCeEEecCcchhcccCCCCCCCCCHHHHHHHHHHHHHhcCcccceeeeEeccccCCcccHHHHHHHHHHHHHhhhCCcc
Confidence 69999999965432111 11 1233445678899999998864211 1222 2344444433322 2 233
Q ss_pred ceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCCCCC---------------------------------CCCC
Q 015826 162 YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND---------------------------------FPMT 208 (399)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~---------------------------------~~~~ 208 (399)
.++..++....-...+..+.+.++++.+-..+-.+|....... ....
T Consensus 81 ~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (325)
T cd01306 81 RADHRLHLRCELADPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAY 160 (325)
T ss_pred hhhcceEEEEeecCccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Confidence 4455555444334455667777777766555444554321000 0123
Q ss_pred CHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCc
Q 015826 209 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288 (399)
Q Consensus 209 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~ 288 (399)
+.++++++++.|+++|+++.+|+..... .+.+..+. |+
T Consensus 161 ~~~~~~~iv~~A~~~gl~vasH~d~~~~-------------------------------~v~~a~~~-----------Gv 198 (325)
T cd01306 161 APANRSELAALARARGIPLASHDDDTPE-------------------------------HVAEAHEL-----------GV 198 (325)
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCChH-------------------------------HHHHHHHC-----------CC
Confidence 4566777777777777777777643210 12222221 33
Q ss_pred eEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCC
Q 015826 289 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSD 368 (399)
Q Consensus 289 ~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sd 368 (399)
. .+.|..+ .+.++.++++|+.+.+. .| ++. .++ +......++++++.|..++++||
T Consensus 199 ~-~~E~p~t----~e~a~~a~~~G~~vv~g-ap-n~l-------rg~----------s~~g~~~~~~ll~~Gv~~al~SD 254 (325)
T cd01306 199 V-ISEFPTT----LEAAKAARELGLQTLMG-AP-NVV-------RGG----------SHSGNVSARELAAHGLLDILSSD 254 (325)
T ss_pred e-eccCCCC----HHHHHHHHHCCCEEEec-Cc-ccc-------cCc----------cccccHhHHHHHHCCCeEEEEcC
Confidence 2 2344333 45556666777766542 12 110 001 11123467889999999999999
Q ss_pred CCCCC
Q 015826 369 HSPTV 373 (399)
Q Consensus 369 h~p~~ 373 (399)
|.|.+
T Consensus 255 ~~p~s 259 (325)
T cd01306 255 YVPAS 259 (325)
T ss_pred CCcHh
Confidence 98875
No 116
>PRK06886 hypothetical protein; Validated
Probab=98.87 E-value=2.1e-07 Score=87.84 Aligned_cols=199 Identities=13% Similarity=0.118 Sum_probs=106.4
Q ss_pred HHHHHHcCCeeeeecCcCCCCC--CCCcHHHHHHHHHHHhccCceeEE-e-eeeeeCCChhhHHHHHHHHHcCCcEEEEe
Q 015826 121 GTKAAAAGGITTLIDMPLNSDP--STISTETLKLKVDAAEKRIYVDVG-F-WGGLVPENAYNASALEALLNAGVLGLKSF 196 (399)
Q Consensus 121 ~~~~al~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~l~~~G~~~ik~~ 196 (399)
..+.++.+|||.++.+. +..| .....+.+.+.++..+...-+.+. + .-++.. +...+.+++..+. ++.+.-.
T Consensus 74 ~l~~~~~~Gtt~iRtHv-dvd~~~~l~~~~a~~~~r~~~~~~idlq~vafPq~g~~~--~~~~~l~~~al~~-advvGGi 149 (329)
T PRK06886 74 AIELMISQGVTAFGTFV-DIDPICEDRAIIAAHKAREVYKHDIILKFANQTLKGVIE--PTAKKWFDIGSEM-VDMIGGL 149 (329)
T ss_pred HHHHHHHcCcccEeeee-ccCCCccccHHHHHHHHHHHhcCcceEEEEecChhhccC--ccHHHHHHHHHHh-CCEEeCc
Confidence 35567899999999887 4444 234566666666666554333332 1 112221 2233455555444 4433221
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHH
Q 015826 197 MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 276 (399)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a 276 (399)
+.........+.+.++.+++.|+++|+++.+|+.+..... ...+..+.+..
T Consensus 150 --P~~~~~~~~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~~~---------------------------~~~le~l~~~~ 200 (329)
T PRK06886 150 --PYRDELDYGRGLEAMDILLDTAKSLGKMVHVHVDQFNTPK---------------------------EKETEQLCDKT 200 (329)
T ss_pred --cCCcCCCCCCCHHHHHHHHHHHHHcCCCeEEeECCCCchh---------------------------HHHHHHHHHHH
Confidence 1110011135678999999999999999999986432110 01222222222
Q ss_pred hhhccCCCCCCceEEEEcCCCh-----hHHHHHHHHHHHCCCCEEEEcccc-ccccccccCCCCCcceEEcCCCCChhhH
Q 015826 277 KDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPH-YLAFSAEEIPDGDTRFKCAPPIRDAANK 350 (399)
Q Consensus 277 ~~~~~~~~~~g~~vhi~H~s~~-----~~~l~~i~~ak~~G~~vt~e~~p~-~L~~~~~~~~~~~~~~~~~Pplr~~~~~ 350 (399)
.+.++ +.++.++|.+.. .+..++++..++.|+.|++ ||. +|.++... + .. |++.. .
T Consensus 201 ~~~Gl-----~grV~~sH~~~L~~~~~~~~~~~i~~La~agi~Vv~--~P~snl~l~~~~----~----~~-p~~rG--v 262 (329)
T PRK06886 201 IEHGM-----QGRVVAIHGISIGAHSKEYRYRLYQKMREADMMVIA--CPMAWIDSNRKE----D----LM-PFHNA--L 262 (329)
T ss_pred HHcCC-----CCCEEEEEeccccCcChhhHHHHHHHHHHcCCeEEE--Cchhhhhhcccc----c----cC-cCCCC--C
Confidence 23321 447888887643 1334467777777776554 553 23222110 0 01 11110 1
Q ss_pred HHHHHHHhcCCccEEeCCCC
Q 015826 351 EKLWEALMDGHIDMLSSDHS 370 (399)
Q Consensus 351 ~~l~~~l~~G~id~i~sdh~ 370 (399)
-.+.+.++.|+.-.+|||..
T Consensus 263 ~pv~eL~~aGV~V~lGtDnv 282 (329)
T PRK06886 263 TPADEMIPEGITVALGTDNI 282 (329)
T ss_pred CCHHHHHHCCCeEEEecCCC
Confidence 12456677899999999975
No 117
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=98.51 E-value=1.2e-07 Score=90.37 Aligned_cols=43 Identities=47% Similarity=0.821 Sum_probs=35.6
Q ss_pred EEecceeecccccCCCCCC-------CcCchHHHHHHHHcCCeeeeecCc
Q 015826 95 VIMPGLIDVHAHLDDPGRT-------EWEGFPSGTKAAAAGGITTLIDMP 137 (399)
Q Consensus 95 ~vlPGlID~H~H~~~~~~~-------~~e~~~~~~~~al~~GvTtv~d~~ 137 (399)
+|+|||||+|+|+..+... ..+.+...++.++++||||+++++
T Consensus 1 ~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~ 50 (333)
T PF01979_consen 1 YVMPGLIDAHVHGGQGGLRGLLDPEDHYESIRTGAKAALKGGVTTVLDTP 50 (333)
T ss_dssp EEEE-EEEEEEEGGGTTHTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CEEcChhHHhhCcCCcCccccCCHHHHHHHHHHHHHHHHhcCeEEEEcCc
Confidence 6899999999999987655 344566778899999999999996
No 118
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=98.33 E-value=2.9e-05 Score=70.87 Aligned_cols=123 Identities=21% Similarity=0.204 Sum_probs=67.8
Q ss_pred eeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCC----
Q 015826 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN---- 175 (399)
Q Consensus 100 lID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 175 (399)
++|+|+|+...... .+.....+.+...||++++.+.. . .+..+...+.+... .++....++.+..
T Consensus 1 ~~D~H~H~~~~~~~--~~~~~~l~~~~~~gv~~~v~~~~--~-----~~~~~~~~~la~~~--~~i~~~~G~hP~~~~~~ 69 (251)
T cd01310 1 LIDTHCHLDFPQFD--ADRDDVLARAREAGVIKIIVVGT--D-----LKSSKRALELAKKY--DNVYAAVGLHPHDADEH 69 (251)
T ss_pred CEEeeeCCCchhhc--cCHHHHHHHHHHcCCCEEEEeCC--C-----HHHHHHHHHHHHhC--CCeEEEEeeCcchhhcC
Confidence 68999999754321 23455566777889999987762 1 12222223333222 1222222333322
Q ss_pred -hhhHHHHHHHHHc-CCcEE-EEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 176 -AYNASALEALLNA-GVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 176 -~~~~~~l~~l~~~-G~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
....++++++++. ++.++ ++.+.............+.++.+++.|+++|+||.+|+..
T Consensus 70 ~~~~~~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~ 130 (251)
T cd01310 70 VDEDLDLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRD 130 (251)
T ss_pred CHHHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeC
Confidence 1235666666643 55566 3333221000000134578899999999999999999853
No 119
>KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=98.06 E-value=6.8e-06 Score=72.80 Aligned_cols=91 Identities=16% Similarity=0.254 Sum_probs=64.9
Q ss_pred EEEEccEEEcCCCceeeEEEEECCEEEEeccCCCCCCCCCCCcEEeCCCCEEecceeecccccCCCC-CC-Cc----Cch
Q 015826 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG-RT-EW----EGF 118 (399)
Q Consensus 45 ~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~-~~-~~----e~~ 118 (399)
+-+.|++|+-..+....++.|+||||..=.+-- ..++..+...|||.|+++.|||||.....+..- ++ .. +.+
T Consensus 14 lQFtNCrilR~g~l~~edlWVR~GRIldpe~vF-FeErt~Ad~riDCgG~IlaPGfIDlQiNGGfGvDFS~dte~~~eGv 92 (407)
T KOG3892|consen 14 LQFTNCRILRGGKLLREDLWVRGGRILDPEKVF-FEERTVADERIDCGGRILAPGFIDLQINGGFGVDFSQDTEDVGEGV 92 (407)
T ss_pred eeeeeeEEeeCCceeehheeEeCCeecCccccc-ceeccchhheeccCCeeecCceEEEEecCccccccccchhhhhhhH
Confidence 448899999887777889999999997543311 011113567899999999999999998765431 22 12 334
Q ss_pred HHHHHHHHcCCeeeeecC
Q 015826 119 PSGTKAAAAGGITTLIDM 136 (399)
Q Consensus 119 ~~~~~~al~~GvTtv~d~ 136 (399)
..-++..+++|+|++.--
T Consensus 93 AlVAr~ll~hGvtsf~Pt 110 (407)
T KOG3892|consen 93 ALVARQLLSHGVTSFCPT 110 (407)
T ss_pred HHHHHHHHhcCCCcCCCc
Confidence 455788899999998743
No 120
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=98.02 E-value=9.9e-05 Score=67.37 Aligned_cols=123 Identities=23% Similarity=0.280 Sum_probs=66.4
Q ss_pred eeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCC----
Q 015826 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN---- 175 (399)
Q Consensus 100 lID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 175 (399)
|||+|+|+...... .+.....+.+...|+++++++.. . ....+...+...... .+....++.+..
T Consensus 1 ~iD~H~Hl~~~~~~--~~~~~~~~~~~~~Gv~~~v~~~~--~-----~~~~~~~~~~~~~~~--~i~~~~GihP~~~~~~ 69 (252)
T TIGR00010 1 LIDAHCHLDFLDFE--EDVEEVIERAKAAGVTAVVAVGT--D-----LEDFLRALELAEKYP--NVYAAVGVHPLDVDDD 69 (252)
T ss_pred CEEeccCCCChhhc--cCHHHHHHHHHHcCCCEEEEecC--C-----HHHHHHHHHHHHHCC--CEEEEEEeCcchhhcC
Confidence 68999998743221 14556667778899999987752 1 223333333333222 222222332221
Q ss_pred -hhhHHHHHHHHH-cCCcEEEEe-ecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 176 -AYNASALEALLN-AGVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 176 -~~~~~~l~~l~~-~G~~~ik~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
....++++++++ .++.++.-. +.............+.+++.++.|+++|++|.+|+..
T Consensus 70 ~~~~~~~l~~~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~ 130 (252)
T TIGR00010 70 TKEDIKELERLAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARD 130 (252)
T ss_pred CHHHHHHHHHHccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecC
Confidence 233456666654 344455321 2211000000012478888899999999999999863
No 121
>PRK10812 putative DNAse; Provisional
Probab=97.98 E-value=0.00026 Score=65.14 Aligned_cols=126 Identities=16% Similarity=0.215 Sum_probs=71.8
Q ss_pred eeecccccCCCCCC-CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc--CceeEEeeeeeeCCCh
Q 015826 100 LIDVHAHLDDPGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLVPENA 176 (399)
Q Consensus 100 lID~H~H~~~~~~~-~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 176 (399)
+||+|+|+..+.+. ..++.......+...||..++..+ .+.+.....++.+... .+..+|+|..... ..
T Consensus 3 ~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~-------~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~-~~ 74 (265)
T PRK10812 3 LVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVA-------TTLPGYRHMRDLVGERDNVVFSCGVHPLNQD-EP 74 (265)
T ss_pred eEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeC-------CCHHHHHHHHHHHhhCCCeEEEEEeCCCCCC-Ch
Confidence 79999999753221 123555667778888998887554 1345555555555432 2223333332211 12
Q ss_pred hhHHHHHHHHHc-CCcEE-EEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 177 YNASALEALLNA-GVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 177 ~~~~~l~~l~~~-G~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
...+++.++++. .+.+| .+.+.+.-.........+.+++.++.|+++|+|+.+|+++
T Consensus 75 ~~~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~ 133 (265)
T PRK10812 75 YDVEELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRD 133 (265)
T ss_pred hHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeC
Confidence 345666666643 34455 3333321000001124567889999999999999999965
No 122
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=97.94 E-value=0.00044 Score=62.84 Aligned_cols=127 Identities=20% Similarity=0.191 Sum_probs=72.7
Q ss_pred eeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc--CceeEEeeeeee-CCCh
Q 015826 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLV-PENA 176 (399)
Q Consensus 100 lID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~ 176 (399)
|||+|+|+....+ .++.......+...||+-++..+. +.+.+...++.+... .+..+++|.... ....
T Consensus 3 liDtH~HL~~~~~--~~d~~~vi~~a~~~gv~~~~~~g~-------~~~~~~~~~~la~~y~~v~~~~G~HP~~~~~~~~ 73 (256)
T COG0084 3 LIDTHCHLDFEEF--DEDRDEVIARAREAGVKKMVVVGT-------DLEDFKRALELAEKYPNVYAAVGVHPLDADEHSE 73 (256)
T ss_pred cEEeeeCCCchhh--cCCHHHHHHHHHHcCCcEEEEeec-------CHHHHHHHHHHHHhCCCeEEEEeeCCCccccccH
Confidence 7999999986322 234455566778899999886651 234444445544433 233344333220 1113
Q ss_pred hhHHHHHHHHHc--CCcEEEE-eecCCCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015826 177 YNASALEALLNA--GVLGLKS-FMCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (399)
Q Consensus 177 ~~~~~l~~l~~~--G~~~ik~-~~~~~~~~~-~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 235 (399)
+..+.+.++++. .+..|.- .+.+.-... ......+.+++-++.|+++++|+.+|+++..
T Consensus 74 ~~~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~ 136 (256)
T COG0084 74 EDLEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAH 136 (256)
T ss_pred HHHHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccH
Confidence 456777777763 4444432 122110000 0001346788889999999999999998743
No 123
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=97.91 E-value=0.00031 Score=64.38 Aligned_cols=127 Identities=20% Similarity=0.279 Sum_probs=70.1
Q ss_pred cceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc--CceeEEeeeeeeCC-
Q 015826 98 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLVPE- 174 (399)
Q Consensus 98 PGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~- 174 (399)
+.+||+|+|+....+ .++.......+...||+.++.+.. +.+.....++..... .+..+|+|......
T Consensus 3 ~~~iD~HcHl~~~~~--~~~~~~~l~~a~~~gv~~~~~~~~-------~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~~ 73 (258)
T PRK11449 3 CRFIDTHCHFDFPPF--SGDEEASLQRAAQAGVGKIIVPAT-------EAENFARVLALAERYQPLYAALGLHPGMLEKH 73 (258)
T ss_pred ceEEEeccCCCChhh--ccCHHHHHHHHHHCCCCEEEEeeC-------CHHHHHHHHHHHHhCCCEEEEEeeCcCccccC
Confidence 458999999975332 234445566777889999886651 344445444444322 22333443322222
Q ss_pred ChhhHHHHHHHHHc---CCcEEEE-eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 175 NAYNASALEALLNA---GVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 175 ~~~~~~~l~~l~~~---G~~~ik~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
.....+++.++++. .+.+|.- .+.+...........+.+.+.++.|+++++||.+|+++
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~ 136 (258)
T PRK11449 74 SDVSLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRR 136 (258)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 22345556655532 2334421 12211000000123467889999999999999999975
No 124
>PRK10425 DNase TatD; Provisional
Probab=97.88 E-value=0.00039 Score=63.66 Aligned_cols=125 Identities=13% Similarity=0.096 Sum_probs=68.5
Q ss_pred eeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC--ceeEEeeeeeeCC-Ch
Q 015826 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLVPE-NA 176 (399)
Q Consensus 100 lID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~ 176 (399)
|||+|+|+....+ .++.......+...||..++..+. +.+.....++...... +..+|+|...... ..
T Consensus 1 ~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~~~~-------~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~~~~ 71 (258)
T PRK10425 1 MFDIGVNLTSSQF--AKDRDDVVARAFAAGVNGMLITGT-------NLRESQQAQKLARQYPSCWSTAGVHPHDSSQWQA 71 (258)
T ss_pred CEEeeeCcCChhh--hccHHHHHHHHHHCCCCEEEEeCC-------CHHHHHHHHHHHHhCCCEEEEEEeCcCccccCCH
Confidence 6899999975332 245556677788889988875541 3445555555544322 2233333322111 12
Q ss_pred hhHHHHHHHHHcC-CcEEE-EeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 177 YNASALEALLNAG-VLGLK-SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 177 ~~~~~l~~l~~~G-~~~ik-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
+..+.+.++.+.. +.+|. +.+.+...........+.+++.++.|+++++|+.+|+.+
T Consensus 72 ~~~~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~ 130 (258)
T PRK10425 72 ATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRD 130 (258)
T ss_pred HHHHHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 3345566655432 23332 222221000000112467888999999999999999974
No 125
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=97.84 E-value=0.00095 Score=62.51 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCc
Q 015826 209 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288 (399)
Q Consensus 209 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~ 288 (399)
..+.+++.++.|+++|+||++|+++... +...++++.++.+. ...
T Consensus 134 q~~~f~~~~~lA~~~~~Pv~iH~~~~~~-------------------------------~~~~~l~~l~~~g~----~~~ 178 (293)
T cd00530 134 EEKVLRAAARAQKETGVPISTHTQAGLT-------------------------------MGLEQLRILEEEGV----DPS 178 (293)
T ss_pred HHHHHHHHHHHHHHHCCeEEEcCCCCcc-------------------------------ccHHHHHHHHHcCC----Chh
Confidence 4558889999999999999999975310 01122233332210 122
Q ss_pred eEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCcc--EEe
Q 015826 289 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID--MLS 366 (399)
Q Consensus 289 ~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id--~i~ 366 (399)
++.+.|.-.. .+.+.++++.+.|..+..+....+ ...+ .+| .....+.++++++.|-.| +++
T Consensus 179 ~~vi~H~~~~-~~~~~~~~~~~~G~~i~~~~~~~~--------~~~~-----~~~--~~~~~~~l~~~~~~~~~d~ill~ 242 (293)
T cd00530 179 KVVIGHLDRN-DDPDYLLKIAALGAYLEFDGIGKD--------KIFG-----YPS--DETRADAVKALIDEGYGDRLLLS 242 (293)
T ss_pred heEEeCCCCC-CCHHHHHHHHhCCCEEEeCCCCcc--------cccC-----CCC--HHHHHHHHHHHHHCCCcCCEEEe
Confidence 4578898632 356778888888865554432210 0000 111 233456789999999888 999
Q ss_pred CCC
Q 015826 367 SDH 369 (399)
Q Consensus 367 sdh 369 (399)
||-
T Consensus 243 TD~ 245 (293)
T cd00530 243 HDV 245 (293)
T ss_pred CCc
Confidence 994
No 126
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=97.75 E-value=0.00035 Score=64.05 Aligned_cols=124 Identities=22% Similarity=0.258 Sum_probs=67.4
Q ss_pred eecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc---CceeEEeeeeeeCC-Ch
Q 015826 101 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR---IYVDVGFWGGLVPE-NA 176 (399)
Q Consensus 101 ID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~ 176 (399)
||+|+|+....+ .++.......+...|++.++.+.. ..+......+..... ....+|+|...... ..
T Consensus 1 iD~H~Hl~~~~~--~~~~~~~~~~~~~~g~~~~i~~~~-------~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~~ 71 (255)
T PF01026_consen 1 IDAHCHLDSPRF--EEDRPEVLERAREAGVSAIIIVST-------DPEDWERVLELASQYPDRVYPALGIHPWEAHEVNE 71 (255)
T ss_dssp EEEEE-TTSGGG--TTTHHHHHHHHHHTTEEEEEEEES-------SHHHHHHHHHHHHHTTTEEEEEE---GGGGGGHSH
T ss_pred CcCccCCCChhh--CcCHHHHHHHHHHcCCCEEEEcCC-------CHHHhHHHHHHHhcCCCeEEEEecCCcchhhhhhH
Confidence 799999986221 234556678888999999986652 223444444333321 23333433322221 22
Q ss_pred hhHHHHHHH--HH-cCCcEEE-EeecCCCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 177 YNASALEAL--LN-AGVLGLK-SFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 177 ~~~~~l~~l--~~-~G~~~ik-~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
+..+.++++ .+ ..+.+|. +.+.+... ........+.+++.++.|+++++|+.+|+.+
T Consensus 72 ~~~~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~ 133 (255)
T PF01026_consen 72 EDLEELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRK 133 (255)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEES
T ss_pred HHHHHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCC
Confidence 334566666 43 3344452 23333100 0001124567889999999999999999976
No 127
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=97.53 E-value=0.0099 Score=54.73 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=69.5
Q ss_pred ceeecccccCCCCCC----------CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEee
Q 015826 99 GLIDVHAHLDDPGRT----------EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168 (399)
Q Consensus 99 GlID~H~H~~~~~~~----------~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (399)
|.||+|.|+..+... ..-+.......+-..||+..+-+..+..+ .. ...+.+..+. ......+
T Consensus 1 ~~iD~H~H~~~~~~~~~~~~~~~~~~~~~~e~l~~~m~~~gV~~aV~vq~~~~~-~~-n~~~~~~~~~--~~r~~g~--- 73 (263)
T cd01311 1 GAVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQASIYG-AD-NSNLLDALAS--NGKARGG--- 73 (263)
T ss_pred CCEEeeeeeeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCcEEEeCccccC-Cc-hHHHHHHHhh--CCCeEEE---
Confidence 679999999754321 01123333455557898887755422111 11 2222222221 1111111
Q ss_pred eeeeCCChhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 169 GGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 169 ~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
..+.+.. ...++++++.+.|+.|++......+ ..+++.+.+.++.+.++|+++.+|+..
T Consensus 74 ~~~~p~~-~~~~~l~~~~~~g~rGvRl~~~~~~-----~~~~~~~~~~~~~~~~~gl~v~~~~~~ 132 (263)
T cd01311 74 ATVDPRT-TTDAELKEMHDAGVRGVRFNFLFGG-----VDNKDELDEIAKRAAELGWHVQVYFDA 132 (263)
T ss_pred EEECCCC-CCHHHHHHHHHCCCeEEEEecccCC-----CCCHHHHHHHHHHHHHcCCEEEEEeCH
Confidence 1122222 2357788888899999997643321 237788899999999999999999853
No 128
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=97.39 E-value=0.0079 Score=52.37 Aligned_cols=120 Identities=23% Similarity=0.337 Sum_probs=66.2
Q ss_pred eeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhc-----------cCceeEEee
Q 015826 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-----------RIYVDVGFW 168 (399)
Q Consensus 100 lID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 168 (399)
+||+|+|++.-++ .-...+..+|+-+++.......| ..+.+.+....++... +..+.++.+
T Consensus 2 ~iD~HiH~d~r~~-------eDlekMa~sGI~~Vit~AhdP~~-~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvH 73 (254)
T COG1099 2 YIDSHIHLDVRGF-------EDLEKMALSGIREVITLAHDPYP-MKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVH 73 (254)
T ss_pred ccccccccccccH-------HHHHHHHHhChhhhhhcccCCCC-cccHHHHHHHHHHHHccchhhHHhhCceeeEEeccC
Confidence 6999999986543 23456677888888876532222 2345555554443311 112233333
Q ss_pred eeeeCC-ChhhHHHHHHHHH-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015826 169 GGLVPE-NAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (399)
Q Consensus 169 ~~~~~~-~~~~~~~l~~l~~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 231 (399)
....+. -...+.+++++.. .++..|.-. |.+...--..+.++.-+++|+++++|+.+|.
T Consensus 74 Pr~iP~e~~~~l~~L~~~l~~e~VvAiGEi----GLe~~t~~E~evf~~QL~LA~e~dvPviVHT 134 (254)
T COG1099 74 PRAIPPELEEVLEELEELLSNEDVVAIGEI----GLEEATDEEKEVFREQLELARELDVPVIVHT 134 (254)
T ss_pred CCCCCchHHHHHHHHHhhcccCCeeEeeec----ccccCCHHHHHHHHHHHHHHHHcCCcEEEeC
Confidence 222222 2234556666654 455555321 1111111234567888999999999999996
No 129
>PRK09358 adenosine deaminase; Provisional
Probab=97.37 E-value=0.024 Score=54.28 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 208 TNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 208 ~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
.+.+.++++++.|+++|+++++|+..
T Consensus 179 ~~~~~~~~~~~~A~~~g~~~~~H~~E 204 (340)
T PRK09358 179 FPPSKFARAFDRARDAGLRLTAHAGE 204 (340)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEcCCC
Confidence 46789999999999999999999853
No 130
>PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O ....
Probab=97.34 E-value=0.00043 Score=53.29 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=31.8
Q ss_pred CccEEEEccEEEcCCCceeeEEEEECCEEEEeccCC
Q 015826 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEE 77 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~ 77 (399)
..|++|.|+.|+|..++..+||.|+||||+.||+..
T Consensus 65 ~lD~VItNa~IiD~~GI~KADIGIkdG~I~gIGkAG 100 (121)
T PF00449_consen 65 ALDLVITNALIIDYTGIVKADIGIKDGRIVGIGKAG 100 (121)
T ss_dssp C-SEEEEEEEEEETTEEEEEEEEEETTEEEEEE-EB
T ss_pred cccEEEeCcEEEecCCcEEeeEEeeCCEEEEEeccC
Confidence 469999999999998899999999999999999754
No 131
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=97.23 E-value=0.0025 Score=58.57 Aligned_cols=110 Identities=19% Similarity=0.230 Sum_probs=65.8
Q ss_pred ChhhHHHHHHHH-HcCCcEEEEeecCCCCCCCCCCCHHHH-HHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchh
Q 015826 175 NAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHI-KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (399)
Q Consensus 175 ~~~~~~~l~~l~-~~G~~~ik~~~~~~~~~~~~~~~~~~l-~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 252 (399)
..+..+++++.+ +.|..|+|++....+ . ...+..+ ..+++.|+++|++|.+|+.......
T Consensus 83 ~~~~~~~l~~~~~~~g~~Gv~l~~~~~~---~-~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~-------------- 144 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRGVKLHPDLGG---F-DPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPD-------------- 144 (273)
T ss_dssp HHHHHHHHHHHHHTTTESEEEEESSETT---C-CTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHH--------------
T ss_pred chhHHHHHHHhccccceeeeEecCCCCc---c-ccccHHHHHHHHHHHHhhccceeeeccccchhh--------------
Confidence 345677788877 689999998754432 1 2233344 4999999999999999975110000
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh----hHHHHHHHHHHHCCCCEEEEccc
Q 015826 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA----SSSLDLLMEAKTNGDSITVETCP 321 (399)
Q Consensus 253 ~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~----~~~l~~i~~ak~~G~~vt~e~~p 321 (399)
..........+..++++ ++++++.+.|+... .+.++++++. -+++++++.
T Consensus 145 ---------~~~~~~~~~~~~~~~~~------~P~l~ii~~H~G~~~~~~~~~~~l~~~~----~nvy~d~s~ 198 (273)
T PF04909_consen 145 ---------APSDPADPEELEELLER------FPDLRIILAHLGGPFPWWEEALRLLDRF----PNVYVDLSG 198 (273)
T ss_dssp ---------HHHHHHHHHHHTTHHHH------STTSEEEESGGGTTHHHHHHHHHHHHHH----TTEEEECHS
T ss_pred ---------hhHHHHHHHHHHHHHHH------hcCCeEEEecCcccchhHHHHHHHHHhC----Ccccccccc
Confidence 00112233444556665 46899999998763 1233333333 368888765
No 132
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=97.20 E-value=0.035 Score=52.82 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 208 TNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 208 ~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
.+.++++.+++.|+++|+++.+|+.
T Consensus 170 ~~~~~~~~~~~~A~~~g~~v~~H~~ 194 (325)
T cd01320 170 FPPEKFVRAFQRAREAGLRLTAHAG 194 (325)
T ss_pred CCHHHHHHHHHHHHHCCCceEEeCC
Confidence 4788999999999999999999984
No 133
>PRK09875 putative hydrolase; Provisional
Probab=96.69 E-value=0.11 Score=48.29 Aligned_cols=104 Identities=16% Similarity=0.250 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCc
Q 015826 209 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288 (399)
Q Consensus 209 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~ 288 (399)
..+.++++.+.+++.|.|+.+|...... +.. .++++++. |+
T Consensus 137 E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~-------------------------------g~e-~l~il~e~-------Gv 177 (292)
T PRK09875 137 EEKVFIAAALAHNQTGRPISTHTSFSTM-------------------------------GLE-QLALLQAH-------GV 177 (292)
T ss_pred HHHHHHHHHHHHHHHCCcEEEcCCCccc-------------------------------hHH-HHHHHHHc-------Cc
Confidence 3457778888888999999999743211 111 23445543 44
Q ss_pred ---eEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhH-HHHHHHHhcCCcc-
Q 015826 289 ---HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANK-EKLWEALMDGHID- 363 (399)
Q Consensus 289 ---~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~-~~l~~~l~~G~id- 363 (399)
++.|.|+... .+++.+++..++|..+-.++.- . + .+ .| .+.| +.+...++.|-.|
T Consensus 178 d~~rvvi~H~d~~-~d~~~~~~l~~~G~~l~fD~~g------~------~-~~--~p----d~~r~~~i~~L~~~Gy~dr 237 (292)
T PRK09875 178 DLSRVTVGHCDLK-DNLDNILKMIDLGAYVQFDTIG------K------N-SY--YP----DEKRIAMLHALRDRGLLNR 237 (292)
T ss_pred CcceEEEeCCCCC-CCHHHHHHHHHcCCEEEeccCC------C------c-cc--CC----HHHHHHHHHHHHhcCCCCe
Confidence 7999999765 6788888888888876655211 0 1 01 12 2234 4555566777555
Q ss_pred -EEeCCCCC
Q 015826 364 -MLSSDHSP 371 (399)
Q Consensus 364 -~i~sdh~p 371 (399)
.+++|-..
T Consensus 238 ilLS~D~~~ 246 (292)
T PRK09875 238 VMLSMDITR 246 (292)
T ss_pred EEEeCCCCC
Confidence 77888643
No 134
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=96.64 E-value=0.18 Score=47.97 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 207 MTNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 207 ~~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
..+.+.+.++++.|+++|+++++|+..
T Consensus 168 ~~~~~~~~~~~~~A~~~g~~i~~Ha~E 194 (324)
T TIGR01430 168 GGPPPDFVRAFAIARELGLHLTVHAGE 194 (324)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEecCC
Confidence 346889999999999999999999853
No 135
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=96.23 E-value=0.054 Score=50.89 Aligned_cols=221 Identities=19% Similarity=0.208 Sum_probs=106.8
Q ss_pred ceeecccccCCC--CC-----CCcC----c---hHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCcee
Q 015826 99 GLIDVHAHLDDP--GR-----TEWE----G---FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 164 (399)
Q Consensus 99 GlID~H~H~~~~--~~-----~~~e----~---~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (399)
|+..+|=|+... +. ..++ + .....+...+.|+.|++|+. +. ....+.+.+++.-+...-...+.
T Consensus 7 G~tl~HEHl~~d~~~~~~~~~~~~~~~~~~~~~~~~El~~~k~~Gg~tiVd~T-~~-g~GRd~~~l~~is~~tGv~II~~ 84 (308)
T PF02126_consen 7 GFTLMHEHLLIDLSGFYKDPDEALDDRDEDVEAAVAELKEFKAAGGRTIVDAT-PI-GLGRDVEALREISRRTGVNIIAS 84 (308)
T ss_dssp SSEEEEEESEEETTTHHHHTGGGGCGHHHHHHHHHHHHHHHHHTTEEEEEE---SG-GGTB-HHHHHHHHHHHT-EEEEE
T ss_pred CCeecccCeeecChhhccCCCcchhhhhhhHHHHHHHHHHHHHcCCCEEEecC-Cc-ccCcCHHHHHHHHHHhCCeEEEe
Confidence 778888888532 11 1112 1 22234556688999999986 11 22334555554433322122222
Q ss_pred EEeeeee-eCCC--hhhHHHHHHH----HHcCCc-------EEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 165 VGFWGGL-VPEN--AYNASALEAL----LNAGVL-------GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 165 ~~~~~~~-~~~~--~~~~~~l~~l----~~~G~~-------~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
-+++... .+.. ....+++.++ +..|+. .||...+.. .........++++..+.++.|+++++|
T Consensus 85 TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~~---~it~~E~k~lrAaa~A~~~TG~pI~~H 161 (308)
T PF02126_consen 85 TGFYKEPFYPEWVREASVEELADLFIREIEEGIDGTGIKAGIIKEIGSSN---PITPLEEKVLRAAARAHKETGAPISTH 161 (308)
T ss_dssp EEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBTT---BCEHHHHHHHHHHHHHHHHHT-EEEEE
T ss_pred CCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCccchhheeEeeccC---CCCHHHHHHHHHHHHHHHHhCCeEEEc
Confidence 2333210 1100 0122333333 234544 345543331 111123456778888888899999999
Q ss_pred cCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHH
Q 015826 231 AEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKT 310 (399)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~ 310 (399)
++..... + .+.+++.++.+. .--++.++|+... .+++.+++.-+
T Consensus 162 ~~~g~~~------------------------------~-~e~~~il~e~Gv----~~~rvvigH~D~~-~D~~y~~~la~ 205 (308)
T PF02126_consen 162 TGRGTRM------------------------------G-LEQLDILEEEGV----DPSRVVIGHMDRN-PDLDYHRELAD 205 (308)
T ss_dssp ESTTGTC------------------------------H-HHHHHHHHHTT------GGGEEETSGGGS-T-HHHHHHHHH
T ss_pred CCCCCcC------------------------------H-HHHHHHHHHcCC----ChhHeEEeCCCCC-CCHHHHHHHHh
Confidence 8543210 1 112233333210 1236899999876 78889999888
Q ss_pred CCCCEEEEccccccccccccCCCCCcceEEcCC--CCChhhH-HHHHHHHhcCCcc--EEeCCCCC
Q 015826 311 NGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP--IRDAANK-EKLWEALMDGHID--MLSSDHSP 371 (399)
Q Consensus 311 ~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pp--lr~~~~~-~~l~~~l~~G~id--~i~sdh~p 371 (399)
+|..+..|..-+.++. .. .+|. ..+.+.| +.|.+.+++|-.| .++.|-+.
T Consensus 206 ~G~~l~~D~~g~~~~g-------~~----~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~ 260 (308)
T PF02126_consen 206 RGVYLEFDTIGREFSG-------KD----KNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGR 260 (308)
T ss_dssp TT-EEEETTTT-B-TT-------TT----TCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHES
T ss_pred cCCEEEecCCcccccC-------cc----cCccCCCCCHHHHHHHHHHHHHcCCcCcEEEeccccc
Confidence 9988877765432210 00 0111 1233344 5677778889887 66777544
No 136
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=95.86 E-value=0.67 Score=43.33 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=65.9
Q ss_pred hHHHHHHHHH-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcC
Q 015826 178 NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 256 (399)
Q Consensus 178 ~~~~l~~l~~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (399)
..+++++.++ .|..++++.....+ ...+++.+..+++.|.++|+|+.+|........ +.. .+
T Consensus 114 a~~E~er~v~~~gf~g~~l~p~~~~----~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~----------~~~---~~ 176 (293)
T COG2159 114 AAEELERRVRELGFVGVKLHPVAQG----FYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGA----------GLE---KG 176 (293)
T ss_pred HHHHHHHHHHhcCceEEEecccccC----CCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCc----------ccc---cC
Confidence 5678888876 58889887533321 234566789999999999999999986543200 000 00
Q ss_pred CCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC--ChhHHHHHHHHHHHCCCCEEEEccc
Q 015826 257 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS--DASSSLDLLMEAKTNGDSITVETCP 321 (399)
Q Consensus 257 ~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s--~~~~~l~~i~~ak~~G~~vt~e~~p 321 (399)
.+.|... -.++++ ++..++.+.|+. -. --.+.+..++ ..-+++.+++-
T Consensus 177 -~~~p~~~--------~~va~~------fP~l~IVl~H~G~~~p-~~~~a~~~a~-~~~nvy~d~s~ 226 (293)
T COG2159 177 -HSDPLYL--------DDVARK------FPELKIVLGHMGEDYP-WELEAIELAY-AHPNVYLDTSG 226 (293)
T ss_pred -CCCchHH--------HHHHHH------CCCCcEEEEecCCCCc-hhHHHHHHHH-hCCCceeeeec
Confidence 1233222 234554 468999999997 43 2334444442 23456666544
No 137
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=95.85 E-value=0.069 Score=52.29 Aligned_cols=185 Identities=22% Similarity=0.214 Sum_probs=92.9
Q ss_pred HHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC-ceeEEeee---e---eeCCChhhHHHHHHHH----HcCC
Q 015826 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWG---G---LVPENAYNASALEALL----NAGV 190 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~---~~~~~~~~~~~l~~l~----~~G~ 190 (399)
...+.+.|+||+.++. . ......+.+..+.+...... .+++..+. + +.++.......+.+.. ..|.
T Consensus 136 ~~~~~a~GiTt~~d~~-~--~~~~~~~~~~~~~~l~~~~~l~~rv~~~~~~~~vk~~~dg~~~~~~a~~~~~~~~~~~g~ 212 (404)
T PF07969_consen 136 AMAAGAYGITTVLDYG-G--GFASDPEDLEALRELAAEGGLPLRVHLYPRIGGVKIFADGSPGGRTALLEEPYYADEPGA 212 (404)
T ss_dssp HHHHCHTCEEEETTCE-C--CCGEHHHHHHHHHHHHHCTC--SEEEEEEEEEEEEEESSSSTTHHHHHHHHHHHHHHHTS
T ss_pred HHHhcCCCeEEecCCc-c--ccCCCHHHHHHHHHHhhhcCCCeeeeeecccCceeeccccccccchhhhccccccCcccc
Confidence 3445689999999987 1 22334556666555544322 23333221 1 1233222222222221 2232
Q ss_pred cEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHH
Q 015826 191 LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 270 (399)
Q Consensus 191 ~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~ 270 (399)
. ... .+.+..+++++.++++.|++.|+.+.+|+.... ++.
T Consensus 213 ~-~~~-------~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd~--------------------------------a~~ 252 (404)
T PF07969_consen 213 P-VHI-------SGLPSFDPEELEELVRAAREAGLQVAVHAIGDR--------------------------------AID 252 (404)
T ss_dssp E-EEE-------TC--SSSHHHHHHHHHHHHHCT-EEEEEEESHH--------------------------------HHH
T ss_pred c-ccc-------cccccccchhHHHHHHHHHhcCCeeEEEEcCCc--------------------------------hHH
Confidence 1 111 123457888899999999999999999994432 233
Q ss_pred HHHHHHhhhccCCCCCCceEEEEcCC--ChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCC--
Q 015826 271 ELLTVAKDTRTDGPAEGAHLHIVHLS--DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD-- 346 (399)
Q Consensus 271 ~~~~~a~~~~~~~~~~g~~vhi~H~s--~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~-- 346 (399)
.++...++. .....+.|.. +. +.++.+++. .+.+++.|+++....... ..+.+..
T Consensus 253 ~~l~a~~~~-------~~~~~i~h~~~~~~-~~~~~~~~l-----~~~~~~~p~~~~~~~~~~--------~~~~~~~~~ 311 (404)
T PF07969_consen 253 EALDAIEAA-------RARGRIEHAELIDP-DDIERMAEL-----GVTASVQPHFLFSWGGEW--------YEERLGPER 311 (404)
T ss_dssp HHHHHHHHH-------TCCHEEEEHCBCCH-HHHHHHHHH-----TTEEEECCTHHHHETEET--------HHHHHHHHC
T ss_pred hHHHHHHhh-------cccceeeccccCCH-HHHHHHHHh-----CCccccChhHhhhccchh--------hhhhhhhHH
Confidence 333333322 1111456654 33 455555444 467788886665443100 0000000
Q ss_pred hhhHHHHHHHHhcCCccEEeCCCC
Q 015826 347 AANKEKLWEALMDGHIDMLSSDHS 370 (399)
Q Consensus 347 ~~~~~~l~~~l~~G~id~i~sdh~ 370 (399)
......+...++.|...+++||+.
T Consensus 312 ~~~~~~~~~~~~~Gv~v~~gsD~p 335 (404)
T PF07969_consen 312 ARRIYPIRSLLDAGVRVALGSDAP 335 (404)
T ss_dssp GGGBTHHHHHHHCTTEEEE--TTT
T ss_pred HHHHhHHHHHHhccCceecCcCCc
Confidence 011145677788999999999974
No 138
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=94.82 E-value=1.9 Score=39.80 Aligned_cols=74 Identities=11% Similarity=0.224 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCc
Q 015826 209 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288 (399)
Q Consensus 209 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~ 288 (399)
....|+++.+..++.|.|+++|.+-... +.+.+--+..+ + ..=.
T Consensus 150 Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~-------------------------------g~eq~~il~~e----g-vdl~ 193 (316)
T COG1735 150 EEKSLRAAARAHKETGAPISTHTPAGTM-------------------------------GLEQLRILAEE----G-VDLR 193 (316)
T ss_pred HHHHHHHHHHHhhhcCCCeEEeccchhh-------------------------------hHHHHHHHHHc----C-CChh
Confidence 3456777777778899999999864321 11211122222 0 0123
Q ss_pred eEEEEcCC-ChhHHHHHHHHHHHCCCCEEEEc
Q 015826 289 HLHIVHLS-DASSSLDLLMEAKTNGDSITVET 319 (399)
Q Consensus 289 ~vhi~H~s-~~~~~l~~i~~ak~~G~~vt~e~ 319 (399)
++.++|+. +. ..+...+.++.+|.-+..|.
T Consensus 194 ~v~igH~d~n~-dd~~y~~~l~~~Ga~l~fD~ 224 (316)
T COG1735 194 KVSIGHMDPNT-DDVYYQKKLADRGAFLEFDR 224 (316)
T ss_pred HeeEeccCCCC-ChHHHHHHHHhcCceEEecc
Confidence 58999998 66 78999999999998665553
No 139
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=91.83 E-value=0.061 Score=52.69 Aligned_cols=15 Identities=60% Similarity=1.179 Sum_probs=12.4
Q ss_pred EEecceeecccccCC
Q 015826 95 VIMPGLIDVHAHLDD 109 (399)
Q Consensus 95 ~vlPGlID~H~H~~~ 109 (399)
+|+|||||+|+|+..
T Consensus 1 ~v~PGfiD~H~H~~~ 15 (404)
T PF07969_consen 1 TVMPGFIDSHTHLDS 15 (404)
T ss_dssp EEEE-EEEEEEEHTT
T ss_pred CCccChhHHhhChHH
Confidence 689999999999864
No 140
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=91.41 E-value=11 Score=34.28 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEecCChh
Q 015826 209 NASHIKEGLSVLARYKRPLLVHAEMEK 235 (399)
Q Consensus 209 ~~~~l~~~~~~a~~~g~~v~~H~~~~~ 235 (399)
+.+.|..+++.|+..|++|+.|.++.+
T Consensus 143 ~n~vl~~a~elA~dvdc~vqLHtes~~ 169 (285)
T COG1831 143 SNEVLEYAMELAKDVDCAVQLHTESLD 169 (285)
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 456788899999999999999998754
No 141
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=91.37 E-value=3.3 Score=37.87 Aligned_cols=67 Identities=9% Similarity=0.010 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCC-HHH---HHHHHHHHHhc-CCCEEEecCChhhchhHHhh
Q 015826 176 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTN-ASH---IKEGLSVLARY-KRPLLVHAEMEKGSERHVKL 243 (399)
Q Consensus 176 ~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~-~~~---l~~~~~~a~~~-g~~v~~H~~~~~~~~~~~~~ 243 (399)
.+.++..++++++|+.-|.+...... ++....+ .++ +..+++.+++. ++++.+|..+++.++..++.
T Consensus 23 ~~~~~~a~~~~~~GA~iIDIG~~st~-p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~ 94 (257)
T TIGR01496 23 DKAVAHAERMLEEGADIIDVGGESTR-PGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALEA 94 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHc
Confidence 34567778888999999988432111 1122233 335 77778888876 99999999999988877765
No 142
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=90.87 E-value=5.2 Score=36.69 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCh
Q 015826 208 TNASHIKEGLSVLARYKRPLLVHAEME 234 (399)
Q Consensus 208 ~~~~~l~~~~~~a~~~g~~v~~H~~~~ 234 (399)
+..+.+++.++..+++|+.+.++....
T Consensus 121 ~~a~~~r~~~~rL~~~gl~fdl~~~~~ 147 (279)
T COG3618 121 FEAPAWRANVERLAKLGLHFDLQVDPH 147 (279)
T ss_pred hhhHHHHHHHHHHHhcCCeEEEEeChh
Confidence 444789999999999999999887543
No 143
>PRK01060 endonuclease IV; Provisional
Probab=90.29 E-value=13 Score=34.17 Aligned_cols=119 Identities=18% Similarity=0.138 Sum_probs=72.7
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC---EEEecCChhhchhHHhhccCcCCchhhh
Q 015826 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP---LLVHAEMEKGSERHVKLEDDTLDTRSYS 254 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~---v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 254 (399)
..+.++.+.+.|.+++.++...+..-..+..+++.++++.+.++++|+. +.+|+...-..
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl----------------- 76 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINL----------------- 76 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecC-----------------
Confidence 3456777778999999987654321112245888899999999999998 88887421100
Q ss_pred cCCCCCChH--HHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC------hhHHH----HHHHHH--HHCCCCEEEEcc
Q 015826 255 TYLKTRPPS--WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD------ASSSL----DLLMEA--KTNGDSITVETC 320 (399)
Q Consensus 255 ~~~~~~p~~--~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~------~~~~l----~~i~~a--k~~G~~vt~e~~ 320 (399)
....|.. .....+++.+++|++. |++..+.|... .++.+ +.++++ .+.|+.+..|..
T Consensus 77 --~~~d~~~r~~s~~~~~~~i~~A~~l-------ga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~ 147 (281)
T PRK01060 77 --GNPNKEILEKSRDFLIQEIERCAAL-------GAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENT 147 (281)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHc-------CCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 0001111 1234577788888875 77777777542 10122 233333 346888999987
Q ss_pred cc
Q 015826 321 PH 322 (399)
Q Consensus 321 p~ 322 (399)
|.
T Consensus 148 ~~ 149 (281)
T PRK01060 148 AG 149 (281)
T ss_pred CC
Confidence 64
No 144
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=90.22 E-value=15 Score=35.70 Aligned_cols=104 Identities=22% Similarity=0.198 Sum_probs=67.4
Q ss_pred CCCChHHHHHHHHHHHHHHhhhccCCCCCCceEE--EEcCC-ChhHHHHHHHHHHHC-CCCEEEEccccccccccccCCC
Q 015826 258 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLH--IVHLS-DASSSLDLLMEAKTN-GDSITVETCPHYLAFSAEEIPD 333 (399)
Q Consensus 258 ~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vh--i~H~s-~~~~~l~~i~~ak~~-G~~vt~e~~p~~L~~~~~~~~~ 333 (399)
.++|...+...+.+....+... +++.+ ..|++ .. ..++.+.+.+++ |++++ ++|++|+.++.+.+..
T Consensus 163 ~~~~~~~~~~~~~~~a~~~~~~-------~~~~~~~~vh~~~~~-~~~~~i~~~~~~~G~~~~-~~~~~~~~~~~~~~~~ 233 (387)
T cd01308 163 SSQPTVEELARIAAEARVGGLL-------GGKAGIVHIHLGDGK-RALSPIFELIEETEIPIT-QFLPTHINRTAPLFEQ 233 (387)
T ss_pred CCCCCHHHHHHHHHHHHHHHHh-------cCCCcEEEEEeCCch-HHHHHHHHHHHhcCCCcc-eeECCcccCCHHHHHH
Confidence 3566777766666666655533 33333 33444 33 677777665554 99999 9999999988773211
Q ss_pred ------CCc----ceEEcCCCCChh---hHHHHHHHHhcCCc-c--EEeCCCC
Q 015826 334 ------GDT----RFKCAPPIRDAA---NKEKLWEALMDGHI-D--MLSSDHS 370 (399)
Q Consensus 334 ------~~~----~~~~~Pplr~~~---~~~~l~~~l~~G~i-d--~i~sdh~ 370 (399)
.|. ..++.||+++.. ..+.+|++++.|.. | +++|||.
T Consensus 234 ~~~~~~~G~~v~i~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~d~i~l~TD~~ 286 (387)
T cd01308 234 GVEFAKMGGTIDLTSSIDPQFRKEGEVRPSEALKRLLEQGVPLERITFSSDGN 286 (387)
T ss_pred HHHHHHcCCcEEEECCCCccccccCccChHHHHHHHHHhCCCCCcEEEEECCC
Confidence 222 245577766543 56888999999864 3 9999996
No 145
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=89.99 E-value=4.2 Score=38.59 Aligned_cols=102 Identities=22% Similarity=0.231 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceE
Q 015826 211 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 290 (399)
Q Consensus 211 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~v 290 (399)
..+..+++.|++.|+++.+|+.+... ...+..++... |..
T Consensus 180 ~~~~~~~~~a~~~gl~~t~HaGE~~~-----------------------------~~~~~~ai~~l----------~~~- 219 (331)
T PF00962_consen 180 LKFAPAFRKAREAGLKLTVHAGETGG-----------------------------PEHIRDAILLL----------GAD- 219 (331)
T ss_dssp GGHHHHHHHHHHTT-EEEEEESSSST-----------------------------HHHHHHHHHTS----------T-S-
T ss_pred HHHHHHHhhhcccceeecceecccCC-----------------------------cccccchhhhc----------cce-
Confidence 34888999999999999999943211 01233333331 111
Q ss_pred EEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCC
Q 015826 291 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDH 369 (399)
Q Consensus 291 hi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh 369 (399)
-|.|.....+.-++++..+++ +|.+|+||..=... .. .+.++ .=.+.+.++.|..-+|+||-
T Consensus 220 RIgHG~~~~~~p~l~~~~~~~--~I~iEvcptSN~~~-~~----------~~~~~----~hP~~~~~~~gv~v~i~TDd 281 (331)
T PF00962_consen 220 RIGHGVRLIKDPELLELLAER--QIPIEVCPTSNVQL-GA----------VPSYE----EHPLRKLLDAGVPVSINTDD 281 (331)
T ss_dssp EEEE-GGGGGSHHHHHHHHHT--T-EEEE-HHHHHHT-TS----------SSTGG----G-CHHHHHHTT-EEEE--BS
T ss_pred eecchhhhhhhhHHHHHHHHh--CCCeeeCCCcCccc-ce----------eeecc----hhHHHHHHHcCCceeccCCC
Confidence 477765321344566666666 57888898520000 00 11111 11256677889999999996
No 146
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=89.55 E-value=14 Score=35.73 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhhccCCCCCCceEEEEcCC---------Ch------hHHHHHHHHHHHCCCCEEEEcccccccccc
Q 015826 268 AIRELLTVAKDTRTDGPAEGAHLHIVHLS---------DA------SSSLDLLMEAKTNGDSITVETCPHYLAFSA 328 (399)
Q Consensus 268 ~v~~~~~~a~~~~~~~~~~g~~vhi~H~s---------~~------~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~ 328 (399)
...+++++++++ ++-+.+.-.- .. -.--++.++|+++|+.+..| -|.|.-++.
T Consensus 207 ~fD~lLeI~~~y-------DVtlSLGDglRPG~i~Da~D~aQi~El~~lgeL~~RA~e~gVQvMVE-GPGHvPl~~ 274 (431)
T PRK13352 207 HFDYLLEILKEY-------DVTLSLGDGLRPGCIADATDRAQIQELITLGELVKRAREAGVQVMVE-GPGHVPLDQ 274 (431)
T ss_pred HHHHHHHHHHHh-------CeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEE-CCCCCCHHH
Confidence 467888888876 4444333321 11 01235667788999999999 588877663
No 147
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=89.52 E-value=17 Score=33.35 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCC
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLK 258 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (399)
...++++.+.|..++.+++..+.....+..+.+.++++.+.++++|+.+.+|+..... + ..
T Consensus 13 ~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~p~~~n-------------l------~s 73 (273)
T smart00518 13 YKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPYLIN-------------L------AS 73 (273)
T ss_pred hHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCceec-------------C------CC
Confidence 3567888889999998876654221112467888999999999999999999732100 0 00
Q ss_pred CCChH--HHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC-----hhHH----HHHHHHHH--HCCCCEEEEcccc
Q 015826 259 TRPPS--WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD-----ASSS----LDLLMEAK--TNGDSITVETCPH 322 (399)
Q Consensus 259 ~~p~~--~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~-----~~~~----l~~i~~ak--~~G~~vt~e~~p~ 322 (399)
..|.. .....+++.+++|++. |++..+.|... .++. .+.+++.- +.|+.+..|..+.
T Consensus 74 ~d~~~r~~~~~~l~~~i~~A~~l-------Ga~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~ 143 (273)
T smart00518 74 PDKEKVEKSIERLIDEIKRCEEL-------GIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVVILLETTAG 143 (273)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHc-------CCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcEEEEeccCC
Confidence 11111 1234577788888875 77766777632 1122 22333322 4688888887654
No 148
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=89.18 E-value=5.5 Score=38.14 Aligned_cols=53 Identities=13% Similarity=-0.026 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHcCCcEEEEeec-CCCCCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 015826 177 YNASALEALLNAGVLGLKSFMC-PSGINDFPMTNASHIKEGLSVLARYKRPLLV 229 (399)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~~~-~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 229 (399)
...+.++.+++.|++.+-+... .........++.+++++++++|+++|+.+.+
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V 67 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYV 67 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 3567888888999887644321 1111122357889999999999999996654
No 149
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=86.77 E-value=28 Score=32.70 Aligned_cols=25 Identities=12% Similarity=-0.017 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHhcC-CCEEEecCC
Q 015826 209 NASHIKEGLSVLARYK-RPLLVHAEM 233 (399)
Q Consensus 209 ~~~~l~~~~~~a~~~g-~~v~~H~~~ 233 (399)
+...+..+++.|++.| +++.+|+..
T Consensus 151 ~~~~f~~~~~~ar~~g~l~~t~HaGE 176 (305)
T cd00443 151 PLRDFYSYYEYARRLGLLGLTLHCGE 176 (305)
T ss_pred CHHHHHHHHHHHHHcCCcceEEeecC
Confidence 5678899999999999 999999853
No 150
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=86.20 E-value=10 Score=36.62 Aligned_cols=107 Identities=19% Similarity=0.139 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC-ceeEEeeeeeeC--CChhhHHHHHHHHHcCCcEEEE
Q 015826 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVP--ENAYNASALEALLNAGVLGLKS 195 (399)
Q Consensus 119 ~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~l~~l~~~G~~~ik~ 195 (399)
......+..+|++.++.+-. ..+...++..++.++..+ +.........++ .-+...+..+++.+.|+++|.+
T Consensus 101 e~Fv~ka~~nGidvfRiFDA-----lND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIci 175 (472)
T COG5016 101 EKFVEKAAENGIDVFRIFDA-----LNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICI 175 (472)
T ss_pred HHHHHHHHhcCCcEEEechh-----ccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEe
Confidence 34567788999999886631 123445555555554322 222221111111 1122456677888899987654
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015826 196 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (399)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 236 (399)
- +-....++....+++...++ +++++.+|++....
T Consensus 176 K------DmaGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG 211 (472)
T COG5016 176 K------DMAGLLTPYEAYELVKAIKKELPVPVELHTHATSG 211 (472)
T ss_pred e------cccccCChHHHHHHHHHHHHhcCCeeEEecccccc
Confidence 2 01124677788888887775 79999999876543
No 151
>PTZ00124 adenosine deaminase; Provisional
Probab=85.25 E-value=30 Score=33.38 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceE
Q 015826 211 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 290 (399)
Q Consensus 211 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~v 290 (399)
..+..+++.|++.|+++.+|+..... +.+ ...+...+.... . -
T Consensus 206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~-------------~~~-------------~~~v~~ai~~l~----------~-~ 248 (362)
T PTZ00124 206 KPFKDIFDYVREAGVNLTVHAGEDVT-------------LPN-------------LNTLYSAIQVLK----------V-K 248 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCC-------------CCc-------------chhHHHHHHHhC----------C-C
Confidence 45788999999999999999943110 000 001222222111 1 1
Q ss_pred EEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCC
Q 015826 291 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (399)
Q Consensus 291 hi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~ 370 (399)
-|.|.....++-++++..++++ |..|+||..= -..+..+-+. .-.+.+.++.|..-+|+||.-
T Consensus 249 RIGHG~~~~~d~~l~~~l~~~~--I~lEvCPtSN-----------~~~~~v~~~~----~HPi~~l~~~Gv~v~InTDDp 311 (362)
T PTZ00124 249 RIGHGIRVAESQELIDMVKEKD--ILLEVCPISN-----------VLLNNAKSMD----THPIRKLYDAGVKVSVNSDDP 311 (362)
T ss_pred ccccccccCCCHHHHHHHHHcC--CeEEECCcch-----------hhhhcCCchh----hHHHHHHHHCCCcEEEeCCCc
Confidence 3555443213345677777775 5667788410 1111222221 123667788899999999986
Q ss_pred CC
Q 015826 371 PT 372 (399)
Q Consensus 371 p~ 372 (399)
..
T Consensus 312 ~~ 313 (362)
T PTZ00124 312 GM 313 (362)
T ss_pred cc
Confidence 55
No 152
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=84.42 E-value=4.9 Score=38.54 Aligned_cols=111 Identities=19% Similarity=0.205 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHhcC--CCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCC
Q 015826 209 NASHIKEGLSVLARYK--RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286 (399)
Q Consensus 209 ~~~~l~~~~~~a~~~g--~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~ 286 (399)
+...+..+++.|++.| +++.+|+..... +. ..+ ...+..++.+..+
T Consensus 177 ~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~-------------~~-------~~~----~~~v~~al~lg~~-------- 224 (345)
T cd01321 177 PLLDFLPQLLWFPKQCAEIPFFFHAGETNG-------------DG-------TET----DENLVDALLLNTK-------- 224 (345)
T ss_pred CHHHHHHHHHHHHHhCCCCceEeecCCCcC-------------CC-------CCC----hhHHHHHHHhCCC--------
Confidence 5678889999999999 999999943210 00 000 1134444433211
Q ss_pred CceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEe
Q 015826 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 366 (399)
Q Consensus 287 g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~ 366 (399)
-|.|.....++-++++..++++ |..|+||-. +. ..+..|.++. -.+.+.++.|..-+|+
T Consensus 225 ----RIGHG~~~~~dp~ll~~l~~~~--I~lEvCPtS-----N~------~~~~v~~~~~----HPl~~ll~~Gv~vtin 283 (345)
T cd01321 225 ----RIGHGFALPKHPLLMDLVKKKN--IAIEVCPIS-----NQ------VLGLVSDLRN----HPAAALLARGVPVVIS 283 (345)
T ss_pred ----cCccccccCcCHHHHHHHHHcC--CeEEECcch-----hh------hhccccchhh----ChHHHHHHCCCeEEEe
Confidence 3556543213456777777774 567788841 00 1112232221 1266778889999999
Q ss_pred CCCCCC
Q 015826 367 SDHSPT 372 (399)
Q Consensus 367 sdh~p~ 372 (399)
||.-..
T Consensus 284 TDDp~~ 289 (345)
T cd01321 284 SDDPGF 289 (345)
T ss_pred CCCcch
Confidence 998655
No 153
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=84.31 E-value=2.3 Score=37.21 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=27.7
Q ss_pred eeecccccCCC---CCCCcCchHHHHHHHHcCCeeeeecCc
Q 015826 100 LIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMP 137 (399)
Q Consensus 100 lID~H~H~~~~---~~~~~e~~~~~~~~al~~GvTtv~d~~ 137 (399)
+||+|+|+-.. |..+.++.....++|.+.|||+++.-+
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTs 41 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATS 41 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecc
Confidence 58999998432 334445555667888999999998765
No 154
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=82.68 E-value=14 Score=38.17 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCc-eeEEeeeeeeC-CChh-hHHHHHHHHHcCCcEEEE
Q 015826 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY-VDVGFWGGLVP-ENAY-NASALEALLNAGVLGLKS 195 (399)
Q Consensus 119 ~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~~l~~l~~~G~~~ik~ 195 (399)
+...+.+.++|+..++.+-. ......++..++.+...+. +.........+ .+.+ ..+..+++.+.|+..|.+
T Consensus 99 ~~~v~~a~~~Gidv~Rifd~-----lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~I 173 (596)
T PRK14042 99 RAFVKLAVNNGVDVFRVFDA-----LNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAI 173 (596)
T ss_pred HHHHHHHHHcCCCEEEEccc-----CcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 44577889999999886641 1234455555555543322 22111111111 1222 234556667789987654
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015826 196 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (399)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 236 (399)
- +-....++..+.+++...++ .++++.+|+++...
T Consensus 174 k------DtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~G 209 (596)
T PRK14042 174 K------DMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSG 209 (596)
T ss_pred C------CcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCC
Confidence 2 11235788888888888775 58999999987654
No 155
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=82.62 E-value=13 Score=37.48 Aligned_cols=106 Identities=9% Similarity=0.051 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC-ce--eEEeeeeeeCCChh-hHHHHHHHHHcCCcEEE
Q 015826 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YV--DVGFWGGLVPENAY-NASALEALLNAGVLGLK 194 (399)
Q Consensus 119 ~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~-~~~~l~~l~~~G~~~ik 194 (399)
....+.+..+|+..++-+- + ......++..++.+...+ .+ .+.+..+-. .+.+ ..+..+++.+.|+..|.
T Consensus 100 ~~fv~~a~~~Gidi~RIfd----~-lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~-~t~e~~~~~a~~l~~~Gad~I~ 173 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFD----A-LNDPRNLEHAMKAVKKVGKHAQGTICYTVSPI-HTVEGFVEQAKRLLDMGADSIC 173 (499)
T ss_pred HHHHHHHHHcCCCEEEEEe----c-CChHHHHHHHHHHHHHhCCeEEEEEEEecCCC-CCHHHHHHHHHHHHHcCCCEEE
Confidence 3456788899999977553 1 123345555555444222 22 222211111 1222 33455667778998775
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecCChhh
Q 015826 195 SFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEMEKG 236 (399)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~~~~ 236 (399)
+- +-....+++.+.+++...++. ++++.+|+++...
T Consensus 174 Ik------DtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~G 212 (499)
T PRK12330 174 IK------DMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTG 212 (499)
T ss_pred eC------CCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCC
Confidence 42 122357888999998888764 6999999987653
No 156
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=82.37 E-value=31 Score=34.43 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=63.0
Q ss_pred HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCc-eeEEeeeeeeCC-Chh-hHHHHHHHHHcCCcEEEEe
Q 015826 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY-VDVGFWGGLVPE-NAY-NASALEALLNAGVLGLKSF 196 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~-~~~~l~~l~~~G~~~ik~~ 196 (399)
...+.+.+.|+..++.+-. ....+.++..++.++..+. +.........+. +.+ ..+..+++.+.|+..|.+.
T Consensus 109 ~fv~~a~~~Gidi~Rifd~-----lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~Ik 183 (468)
T PRK12581 109 KFISLSAQNGIDVFRIFDA-----LNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIK 183 (468)
T ss_pred HHHHHHHHCCCCEEEEccc-----CCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEC
Confidence 3467788999999886641 1234555555555543322 222211111221 111 3455666777899877542
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhc-CCCEEEecCChhh
Q 015826 197 MCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEMEKG 236 (399)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~~~~ 236 (399)
+-....+++.+.++++..++. ++++.+|+++...
T Consensus 184 ------DtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~G 218 (468)
T PRK12581 184 ------DMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSG 218 (468)
T ss_pred ------CCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCc
Confidence 122357888888888888764 6899999987653
No 157
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=81.61 E-value=31 Score=32.13 Aligned_cols=108 Identities=12% Similarity=0.067 Sum_probs=58.3
Q ss_pred cCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHH----HHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCC
Q 015826 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD----AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGV 190 (399)
Q Consensus 115 ~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 190 (399)
.+.+....+..+..|+..++-.+....-...+.+...+..+ ...++..+-. +......+..+..+...+.|+
T Consensus 20 ~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~----gv~~~t~~~i~~a~~a~~~Ga 95 (289)
T cd00951 20 EDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLA----GAGYGTATAIAYAQAAEKAGA 95 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEE----ecCCCHHHHHHHHHHHHHhCC
Confidence 34456667778899999987665222222223333333333 2222222111 222234455666677777899
Q ss_pred cEEEEeecCCCCCCCCCCCHHHHHHHHHH-HHhcCCCEEEec
Q 015826 191 LGLKSFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVHA 231 (399)
Q Consensus 191 ~~ik~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~g~~v~~H~ 231 (399)
+++-+. ++ .+...+++.+.+-++. +...++|+.+.-
T Consensus 96 d~v~~~--pP---~y~~~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 96 DGILLL--PP---YLTEAPQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred CEEEEC--CC---CCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 988553 21 1223466766665544 445788988874
No 158
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=80.70 E-value=61 Score=31.88 Aligned_cols=71 Identities=13% Similarity=0.052 Sum_probs=49.2
Q ss_pred cCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC---EEEecCC
Q 015826 160 RIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP---LLVHAEM 233 (399)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~---v~~H~~~ 233 (399)
...+.++.|..+..+ ....+++..+.|+..|.+|...+-.-..+..+++.+.+..+.++++|+. +.+|+.-
T Consensus 128 ~~~~~iGaHvSiaGG---~~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapY 201 (413)
T PTZ00372 128 KSNVYIGAHVSASGG---VDNSPINAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSY 201 (413)
T ss_pred ccCceEEEEEecccc---HHHHHHHHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCc
Confidence 344566666554322 2346777888899999998766522223457889999999999999763 7889753
No 159
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=79.03 E-value=65 Score=31.27 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=17.9
Q ss_pred HHHHHHHHCCCCEEEEccccccccc
Q 015826 303 DLLMEAKTNGDSITVETCPHYLAFS 327 (399)
Q Consensus 303 ~~i~~ak~~G~~vt~e~~p~~L~~~ 327 (399)
++.++|+++|+.+..| -|.|.-++
T Consensus 247 eL~~rA~e~gVQvMVE-GPGHvPl~ 270 (423)
T TIGR00190 247 ELVERAREADVQCMVE-GPGHVPLD 270 (423)
T ss_pred HHHHHHHHcCCeEEEE-CCCCCcHH
Confidence 5667788888888888 67776665
No 160
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=77.54 E-value=58 Score=29.87 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=70.5
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-CCCEEEecCChhhchhHHhhccCcCCchhhhcCC
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 257 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (399)
.+.++.+.+.|.+++.+.+........+..+++.+.++.+.++++ ++.+.+|+...... .
T Consensus 13 ~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~----~--------------- 73 (279)
T cd00019 13 ENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINL----A--------------- 73 (279)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceecc----C---------------
Confidence 456677777898888776544311111234678999999999999 88999997432100 0
Q ss_pred CCCCh--HHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh---------hHHHHH----HHHHHHCCCCEEEEcccc
Q 015826 258 KTRPP--SWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA---------SSSLDL----LMEAKTNGDSITVETCPH 322 (399)
Q Consensus 258 ~~~p~--~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~---------~~~l~~----i~~ak~~G~~vt~e~~p~ 322 (399)
...|. ......+++.+++|++. |++..+.|.... ...++. .+.+++.|+.+..|..+.
T Consensus 74 ~~~~~~r~~~~~~~~~~i~~A~~l-------G~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~ 146 (279)
T cd00019 74 SPDKEKREKSIERLKDEIERCEEL-------GIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAG 146 (279)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-------CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCC
Confidence 00011 11124567778888875 777777775431 011222 333456799999988765
Q ss_pred c
Q 015826 323 Y 323 (399)
Q Consensus 323 ~ 323 (399)
.
T Consensus 147 ~ 147 (279)
T cd00019 147 Q 147 (279)
T ss_pred C
Confidence 4
No 161
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=76.40 E-value=40 Score=34.88 Aligned_cols=107 Identities=15% Similarity=0.057 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCce-eEEeeeeeeC-CChh-hHHHHHHHHHcCCcEEEE
Q 015826 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYV-DVGFWGGLVP-ENAY-NASALEALLNAGVLGLKS 195 (399)
Q Consensus 119 ~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~-~~~~l~~l~~~G~~~ik~ 195 (399)
....+.+..+|+..++-+- . ......+...++.++..+.. .........+ .+.+ ..+..+++.+.|++.|.+
T Consensus 100 ~~~v~~a~~~Gid~~rifd-~----lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i 174 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFD-A----MNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCI 174 (593)
T ss_pred HHHHHHHHhcCCCEEEEee-e----CCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEE
Confidence 3446778899999887653 1 11234555555555533321 1111110111 1122 234455666789987654
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015826 196 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (399)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 236 (399)
- +-.....+..+.++++..++ .++++.+|+++...
T Consensus 175 ~------Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~G 210 (593)
T PRK14040 175 K------DMAGLLKPYAAYELVSRIKKRVDVPLHLHCHATTG 210 (593)
T ss_pred C------CCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCc
Confidence 2 11235788888888888775 68999999988664
No 162
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=75.01 E-value=62 Score=29.70 Aligned_cols=104 Identities=13% Similarity=-0.054 Sum_probs=59.4
Q ss_pred HHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC-ceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecC
Q 015826 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCP 199 (399)
Q Consensus 121 ~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~ 199 (399)
....+...|+..++-.. + ....+.+....+.++..+ .+.+..............+.++++.+.|+..|.+.
T Consensus 87 ~l~~a~~~gv~~iri~~----~-~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~--- 158 (266)
T cd07944 87 LLEPASGSVVDMIRVAF----H-KHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV--- 158 (266)
T ss_pred HHHHHhcCCcCEEEEec----c-cccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe---
Confidence 35566778887765432 1 123445555555554333 23333222221111223445556667898877542
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh-cC--CCEEEecCChh
Q 015826 200 SGINDFPMTNASHIKEGLSVLAR-YK--RPLLVHAEMEK 235 (399)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~a~~-~g--~~v~~H~~~~~ 235 (399)
+.....+++++.++++..++ .+ +++.+|++|..
T Consensus 159 ---DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~ 194 (266)
T cd07944 159 ---DSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNL 194 (266)
T ss_pred ---cCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 12235788999999988876 45 89999998754
No 163
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=74.92 E-value=18 Score=36.37 Aligned_cols=65 Identities=20% Similarity=0.118 Sum_probs=39.3
Q ss_pred EEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCC
Q 015826 291 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (399)
Q Consensus 291 hi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~ 370 (399)
-|.|.-...+.-++++..|++ +|..|+||-. +-..+..+.++.- .+...++.|+.-+|+||.-
T Consensus 351 RIGHG~~l~~~P~l~~~vke~--~I~lEvCP~S-----------N~~l~~v~~~~~H----Pl~~lla~Gvpv~InSDDP 413 (479)
T TIGR01431 351 RIGHGFALVKHPLVLQMLKER--NIAVEVNPIS-----------NQVLQLVADLRNH----PCAYLFADNYPMVISSDDP 413 (479)
T ss_pred cccCcccccCCHHHHHHHHHh--CCeEEECccc-----------hhhhcccCCcccC----hHHHHHHCCCcEEEeCCCc
Confidence 366754321334567777777 5677889841 1122333434432 2556688899999999986
Q ss_pred CC
Q 015826 371 PT 372 (399)
Q Consensus 371 p~ 372 (399)
..
T Consensus 414 ~~ 415 (479)
T TIGR01431 414 AF 415 (479)
T ss_pred cc
Confidence 55
No 164
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=74.35 E-value=52 Score=32.82 Aligned_cols=106 Identities=15% Similarity=0.083 Sum_probs=60.8
Q ss_pred HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC-ceeEEeeeeeeC-CChh-hHHHHHHHHHcCCcEEEEe
Q 015826 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVP-ENAY-NASALEALLNAGVLGLKSF 196 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~-~~~~l~~l~~~G~~~ik~~ 196 (399)
...+.+++.|+..++-+- ..+ ....+...++.+...+ .+.+.+.....+ .+.+ ..+..+++.+.|++.|.+-
T Consensus 100 ~~v~~A~~~Gvd~irif~-~ln----d~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~ 174 (448)
T PRK12331 100 SFVQKSVENGIDIIRIFD-ALN----DVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIK 174 (448)
T ss_pred HHHHHHHHCCCCEEEEEE-ecC----cHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 445778899999876553 111 1223444555544332 222222111111 1112 2455666778899876542
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015826 197 MCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (399)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 236 (399)
+.....++..+.++++..++ .++++.+|++|...
T Consensus 175 ------Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~G 209 (448)
T PRK12331 175 ------DMAGILTPYVAYELVKRIKEAVTVPLEVHTHATSG 209 (448)
T ss_pred ------CCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 11235788888888888775 58999999987653
No 165
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=73.36 E-value=19 Score=34.35 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCC
Q 015826 208 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 287 (399)
Q Consensus 208 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g 287 (399)
...+....+++.++..|+.+.+||.... ++ +.+..++....-
T Consensus 182 ~p~~~f~~~f~~~r~~gl~lt~HaGE~~-------------~~----------------~~i~~al~~~~~--------- 223 (345)
T COG1816 182 YPPELFVSLFKLARDNGLKLTIHAGEAG-------------GP----------------ESIRDALDLLGA--------- 223 (345)
T ss_pred CCHHHHHHHHHHHHHcCceEEEeccccC-------------Cc----------------HHHHHHHHHhch---------
Confidence 4678899999999999999999996321 11 123333333321
Q ss_pred ceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeC
Q 015826 288 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 367 (399)
Q Consensus 288 ~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~s 367 (399)
. -|.|.-...++-++++....++ |-.++||-. .+ -.++.+.++.- .+.+.+..|.--.|.|
T Consensus 224 -~-rI~HGi~~~~d~~L~~~l~~~q--I~levCP~S------Ni-----~~~~v~~~~~h----Pf~~~~d~Gv~VsLnT 284 (345)
T COG1816 224 -E-RIGHGIRAIEDPELLYRLAERQ--IPLEVCPLS------NI-----QLGVVPSLAKH----PFKKLFDAGVKVSLNT 284 (345)
T ss_pred -h-hhccccccccCHHHHHHHHHhC--CeeEECCcc------hh-----hcccccchhhC----cHHHHHHcCCceEEcC
Confidence 0 2556543224456777777765 456678831 00 12233333322 2777888899999999
Q ss_pred CCCCCC
Q 015826 368 DHSPTV 373 (399)
Q Consensus 368 dh~p~~ 373 (399)
|.-++.
T Consensus 285 Ddp~~f 290 (345)
T COG1816 285 DDPLYF 290 (345)
T ss_pred CChhhc
Confidence 976553
No 166
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=73.31 E-value=27 Score=32.89 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh---cCCCEEEecCC
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAEM 233 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~~ 233 (399)
.+.++.+++.|+.++-+. ... ..++.++.+|-+++++.+.+ -+++|.+|+..
T Consensus 32 ~~lv~~li~~Gv~Gi~v~-Gst--GE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~ 86 (309)
T cd00952 32 ARLVERLIAAGVDGILTM-GTF--GECATLTWEEKQAFVATVVETVAGRVPVFVGATT 86 (309)
T ss_pred HHHHHHHHHcCCCEEEEC-ccc--ccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc
Confidence 455667778899988542 111 24567888888888776654 24778888743
No 167
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=73.07 E-value=60 Score=30.42 Aligned_cols=108 Identities=15% Similarity=0.073 Sum_probs=58.3
Q ss_pred cCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHH----hccCceeEEeeeeeeCCChhhHHHHHHHHHcCC
Q 015826 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA----EKRIYVDVGFWGGLVPENAYNASALEALLNAGV 190 (399)
Q Consensus 115 ~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 190 (399)
.+.+....+..+..||..++-.+....-...+.+...+.++.. .++..+-. ++.....+.++..+...+.|+
T Consensus 27 ~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~----gv~~~t~~~i~~~~~a~~~Ga 102 (303)
T PRK03620 27 EAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIA----GAGGGTAQAIEYAQAAERAGA 102 (303)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEE----ecCCCHHHHHHHHHHHHHhCC
Confidence 3445566777889999998766522222223344333333322 22222111 222233455666777777899
Q ss_pred cEEEEeecCCCCCCCCCCCHHHHHHHHHH-HHhcCCCEEEec
Q 015826 191 LGLKSFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVHA 231 (399)
Q Consensus 191 ~~ik~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~g~~v~~H~ 231 (399)
+++-+.. + .+...+++.+..-++. +...++|+.+.-
T Consensus 103 dav~~~p-P----~y~~~~~~~i~~~f~~va~~~~lpi~lYn 139 (303)
T PRK03620 103 DGILLLP-P----YLTEAPQEGLAAHVEAVCKSTDLGVIVYN 139 (303)
T ss_pred CEEEECC-C----CCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 9885532 1 1223466666666555 445689988763
No 168
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=72.68 E-value=73 Score=31.93 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=60.8
Q ss_pred HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC-ceeEEeeeeeeC-CChh-hHHHHHHHHHcCCcEEEEe
Q 015826 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVP-ENAY-NASALEALLNAGVLGLKSF 196 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~-~~~~l~~l~~~G~~~ik~~ 196 (399)
...+.++.+|+..++-+- . ......+...++.+...+ .+.......+.+ .+.+ ..+..+++.+.|++.|.+-
T Consensus 99 ~fv~~A~~~Gvd~irif~-~----lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~ 173 (467)
T PRK14041 99 LFVKKVAEYGLDIIRIFD-A----LNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIK 173 (467)
T ss_pred HHHHHHHHCCcCEEEEEE-e----CCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 346788899999876553 1 112444555555544322 222222111111 1122 2344556677899876542
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015826 197 MCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (399)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 236 (399)
+.....++..+.++++..++ .++++.+|++|...
T Consensus 174 ------Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~G 208 (467)
T PRK14041 174 ------DMAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTG 208 (467)
T ss_pred ------CccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCC
Confidence 11235788888888888775 58999999987653
No 169
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=72.58 E-value=66 Score=29.41 Aligned_cols=105 Identities=13% Similarity=0.031 Sum_probs=58.4
Q ss_pred HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC-ceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeec
Q 015826 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMC 198 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~ 198 (399)
.....++..|+..++-.. .. .....+....+.+...+ .+.+........+.....+.++++.+.|++.|.+ .
T Consensus 89 ~~i~~a~~~g~~~iri~~-~~----s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l--~ 161 (263)
T cd07943 89 DDLKMAADLGVDVVRVAT-HC----TEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV--T 161 (263)
T ss_pred HHHHHHHHcCCCEEEEEe-ch----hhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE--c
Confidence 345667788988766432 11 11233444445444333 2233222111111222344456666789987644 2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-cCC-CEEEecCChh
Q 015826 199 PSGINDFPMTNASHIKEGLSVLAR-YKR-PLLVHAEMEK 235 (399)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~a~~-~g~-~v~~H~~~~~ 235 (399)
. ......++.+.++++..++ .+. ++.+|++|..
T Consensus 162 D----T~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~ 196 (263)
T cd07943 162 D----SAGAMLPDDVRERVRALREALDPTPVGFHGHNNL 196 (263)
T ss_pred C----CCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCc
Confidence 1 2235788999999988876 465 8999998754
No 170
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=72.18 E-value=82 Score=29.09 Aligned_cols=109 Identities=12% Similarity=0.023 Sum_probs=59.5
Q ss_pred CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeee-CCChhhHHHHHHHHHcCCcE
Q 015826 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-PENAYNASALEALLNAGVLG 192 (399)
Q Consensus 114 ~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~G~~~ 192 (399)
+.+.+.......+..|+..++-.+....-...+.+...+..+....... .+ ..++. ....+.++..+...+.|+++
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~v--i~gvg~~~~~~ai~~a~~a~~~Gad~ 94 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-KV--IFQVGSLNLEESIELARAAKSFGIYA 94 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-CE--EEEeCcCCHHHHHHHHHHHHHcCCCE
Confidence 3344566677788999999887652112122333333333332221110 11 11221 22344566666777789998
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 193 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 193 ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
+-+..-+ .++..+++.+.+-++...+ ++|+.+.
T Consensus 95 v~v~~P~----y~~~~~~~~i~~yf~~v~~-~lpv~iY 127 (279)
T cd00953 95 IASLPPY----YFPGIPEEWLIKYFTDISS-PYPTFIY 127 (279)
T ss_pred EEEeCCc----CCCCCCHHHHHHHHHHHHh-cCCEEEE
Confidence 8653211 1122367888877777777 8999887
No 171
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=71.92 E-value=97 Score=31.35 Aligned_cols=116 Identities=9% Similarity=0.007 Sum_probs=74.0
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-CCCEEEecCChhhchhHHhhccCcCCchhhhcC
Q 015826 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 256 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (399)
..+...++.++|++-|-+.+... ....+.+..+++..++. +.++.+-..+++.++..+..+- +...
T Consensus 167 i~~~A~~~~~~GADIIDIG~~st------~p~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGA---diIN---- 233 (499)
T TIGR00284 167 IEGLAARMERDGADMVALGTGSF------DDDPDVVKEKVKTALDALDSPVIADTPTLDELYEALKAGA---SGVI---- 233 (499)
T ss_pred HHHHHHHHHHCCCCEEEECCCcC------CCcHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCC---CEEE----
Confidence 34556677789999887653221 12445688888888876 8999999999988877775421 1111
Q ss_pred CCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh---hHHHHHHHHHHHCCC-CEEEEc
Q 015826 257 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA---SSSLDLLMEAKTNGD-SITVET 319 (399)
Q Consensus 257 ~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~---~~~l~~i~~ak~~G~-~vt~e~ 319 (399)
+... ....++..+++++ |+++.+.|.... ....+.++.+++.|+ ++.+|.
T Consensus 234 --sVs~----~~~d~~~~l~a~~-------g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDP 287 (499)
T TIGR00284 234 --MPDV----ENAVELASEKKLP-------EDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAADP 287 (499)
T ss_pred --ECCc----cchhHHHHHHHHc-------CCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeC
Confidence 1100 1233455556554 888999996531 134567788889999 666664
No 172
>PLN02417 dihydrodipicolinate synthase
Probab=71.14 E-value=64 Score=29.86 Aligned_cols=110 Identities=11% Similarity=0.064 Sum_probs=58.3
Q ss_pred cCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeC-CChhhHHHHHHHHHcCCcEE
Q 015826 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGVLGL 193 (399)
Q Consensus 115 ~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~G~~~i 193 (399)
.+.+....+..+..|+..++-.+....-...+.+...+..+.......-.+....++.. ...+.++..+...+.|++++
T Consensus 21 ~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav 100 (280)
T PLN02417 21 LEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAA 100 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEE
Confidence 34455667777889999987665222222223333333333222110001112222222 33455666667778899987
Q ss_pred EEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 194 KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 194 k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
-+.. + .+...+++++.+-++...+.. |+.+.
T Consensus 101 ~~~~--P---~y~~~~~~~i~~~f~~va~~~-pi~lY 131 (280)
T PLN02417 101 LHIN--P---YYGKTSQEGLIKHFETVLDMG-PTIIY 131 (280)
T ss_pred EEcC--C---ccCCCCHHHHHHHHHHHHhhC-CEEEE
Confidence 6532 1 122346788887777766666 88765
No 173
>PRK08392 hypothetical protein; Provisional
Probab=71.09 E-value=73 Score=28.07 Aligned_cols=175 Identities=13% Similarity=0.127 Sum_probs=85.4
Q ss_pred eecccccCCCCCCCcCchHHHHHHHHcCCeeeee--cCcCCCCCCCCcHHHHHHHHH---HHhccCcee--EEeeeeeeC
Q 015826 101 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI--DMPLNSDPSTISTETLKLKVD---AAEKRIYVD--VGFWGGLVP 173 (399)
Q Consensus 101 ID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~--d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~ 173 (399)
||.|+|..... ....+....+.|.+.|++.+. |+. +.. ....+..+.+ .......+. .+......+
T Consensus 1 ~D~H~HT~~sd--~~~~~~e~v~~A~~~Gl~~i~iTdH~----~~~-~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~ 73 (215)
T PRK08392 1 MDLHTHTVYSD--GIGSVRDNIAEAERKGLRLVGISDHI----HYF-TPSKFNAYINEIRQWGEESEIVVLAGIEANITP 73 (215)
T ss_pred CccccCCCCcC--CcCCHHHHHHHHHHcCCCEEEEccCC----Ccc-chhhHHHHHHHHHHHhhccCceEEEeEEeeecC
Confidence 79999986542 234466778889999999874 332 111 1112222221 111111122 222222222
Q ss_pred CChhhHHHHHHHHHcCCcEE--EEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCch
Q 015826 174 ENAYNASALEALLNAGVLGL--KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 251 (399)
Q Consensus 174 ~~~~~~~~l~~l~~~G~~~i--k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~ 251 (399)
+. .+...++.+ ..+-+ ++..... +..-.+-++.+.+.++....-+..|....-. ..
T Consensus 74 ~~---~~~~~~~~~-~~D~vI~SvH~~~~-----~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~----------~~--- 131 (215)
T PRK08392 74 NG---VDITDDFAK-KLDYVIASVHEWFG-----RPEHHEYIELVKLALMDENVDIIGHFGNSFP----------YI--- 131 (215)
T ss_pred Cc---chhHHHHHh-hCCEEEEEeecCcC-----CcHHHHHHHHHHHHHhcCCCCEEeCCCcccc----------CC---
Confidence 22 233334333 22221 2211110 0011244555666666666788889643210 00
Q ss_pred hhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEcccc
Q 015826 252 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH 322 (399)
Q Consensus 252 ~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~ 322 (399)
..+. ...+.++++.+++. |..+-|--.-.. -..++++.+++.|++++...-.|
T Consensus 132 -------~~~~---~~~~~~i~~~~~~~-------g~~lEiNt~~~~-p~~~~l~~~~~~G~~~~igSDAH 184 (215)
T PRK08392 132 -------GYPS---EEELKEILDLAEAY-------GKAFEISSRYRV-PDLEFIRECIKRGIKLTFASDAH 184 (215)
T ss_pred -------CCch---HHHHHHHHHHHHHh-------CCEEEEeCCCCC-CCHHHHHHHHHcCCEEEEeCCCC
Confidence 0111 23456777777764 776666421111 24578999999999888776555
No 174
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.76 E-value=87 Score=28.78 Aligned_cols=117 Identities=21% Similarity=0.112 Sum_probs=68.7
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC---EEEecCCh-hhchhHHhhccCcCCchhhh
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP---LLVHAEME-KGSERHVKLEDDTLDTRSYS 254 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~---v~~H~~~~-~~~~~~~~~~~~~~~~~~~~ 254 (399)
.+.++++.+.|+.++.+|...+..-..+..+.+...+..+...++++. +.+|+.-. ...
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNla----------------- 76 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLA----------------- 76 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecC-----------------
Confidence 457888888999999998766532222345677777777778888776 78896432 110
Q ss_pred cCCCCCChH--HHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh-----hHHHHH----HHHH--HHCCCCEEEEccc
Q 015826 255 TYLKTRPPS--WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDL----LMEA--KTNGDSITVETCP 321 (399)
Q Consensus 255 ~~~~~~p~~--~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~-----~~~l~~----i~~a--k~~G~~vt~e~~p 321 (399)
...+.. .....+.+.+++|++. |++..+.|..+. ++.++. +++. ...|+.+..|..|
T Consensus 77 ---s~~~~~r~~sv~~~~~~i~~A~~l-------ga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~ 146 (274)
T TIGR00587 77 ---SPDEEKEEKSLDVLDEELKRCELL-------GIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKIVTILLENMA 146 (274)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHc-------CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCC
Confidence 001111 1124556667777764 777777776431 122222 2222 2346788888766
Q ss_pred c
Q 015826 322 H 322 (399)
Q Consensus 322 ~ 322 (399)
.
T Consensus 147 ~ 147 (274)
T TIGR00587 147 G 147 (274)
T ss_pred C
Confidence 4
No 175
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=70.70 E-value=72 Score=30.46 Aligned_cols=103 Identities=8% Similarity=-0.034 Sum_probs=59.1
Q ss_pred HHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCc-eeEEeeeeeeCCChh-hHHHHHHHHHcCCcEEEEeec
Q 015826 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY-VDVGFWGGLVPENAY-NASALEALLNAGVLGLKSFMC 198 (399)
Q Consensus 121 ~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~l~~l~~~G~~~ik~~~~ 198 (399)
..+.+...|+..++-.. .. ...+...+.++.++..+. +.+.+... ...+++ ..+..+.+.+.|+..|.+ .
T Consensus 93 dl~~a~~~gvd~iri~~-~~----~e~~~~~~~i~~ak~~G~~v~~~l~~a-~~~~~e~l~~~a~~~~~~Ga~~i~i--~ 164 (337)
T PRK08195 93 DLKMAYDAGVRVVRVAT-HC----TEADVSEQHIGLARELGMDTVGFLMMS-HMAPPEKLAEQAKLMESYGAQCVYV--V 164 (337)
T ss_pred HHHHHHHcCCCEEEEEE-ec----chHHHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHhCCCCEEEe--C
Confidence 45778888999876443 11 122344555555544332 22222211 112222 234445556689987644 2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecCChh
Q 015826 199 PSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEMEK 235 (399)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~~~ 235 (399)
. ......++.+.+.++..++. ++++.+|++|.-
T Consensus 165 D----T~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hnnl 200 (337)
T PRK08195 165 D----SAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNL 200 (337)
T ss_pred C----CCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCc
Confidence 2 23357889999999888864 689999998754
No 176
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=70.65 E-value=64 Score=30.07 Aligned_cols=109 Identities=10% Similarity=0.061 Sum_probs=57.9
Q ss_pred CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHH----HHhccCceeEEeeeeeeCCChhhHHHHHHHHHcC
Q 015826 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD----AAEKRIYVDVGFWGGLVPENAYNASALEALLNAG 189 (399)
Q Consensus 114 ~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 189 (399)
+.+.+....+..+..|++.++-.+....-...+.+...+..+ ...++..+-.+ +.....+.++..+...+.|
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~g----v~~~t~~ai~~a~~a~~~G 99 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTG----VGGNTSDAIEIARLAEKAG 99 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEe----cCccHHHHHHHHHHHHHhC
Confidence 334456667788899999988665222222233333333333 22232222222 2222445566667777789
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHH-HHhcCCCEEEec
Q 015826 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVHA 231 (399)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~g~~v~~H~ 231 (399)
++++-+. .| .+...+++.+.+-++. +...++++.+.-
T Consensus 100 adav~~~-pP----~y~~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 100 ADGYLLL-PP----YLINGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred CCEEEEC-CC----CCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 9988553 22 1222356666655554 445678887753
No 177
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=70.20 E-value=70 Score=33.10 Aligned_cols=107 Identities=18% Similarity=0.132 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC-ceeEEeeeeeeC-CCh-hhHHHHHHHHHcCCcEEEE
Q 015826 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVP-ENA-YNASALEALLNAGVLGLKS 195 (399)
Q Consensus 119 ~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~-~~~~~l~~l~~~G~~~ik~ 195 (399)
....+.++..|+..++-+- .. .....+....+.+...+ .+.+.......+ .+. ...+.++++.+.|++.|.+
T Consensus 94 ~~~v~~a~~~Gvd~irif~-~l----nd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i 168 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFD-AL----NDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICI 168 (582)
T ss_pred HHHHHHHHHCCCCEEEEEE-ec----CcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3456778899999876553 11 12244555555554332 233222111122 112 2345566777889987654
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015826 196 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (399)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 236 (399)
- +.....++..+.++++..++ .++++.+|++|...
T Consensus 169 ~------Dt~G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~G 204 (582)
T TIGR01108 169 K------DMAGILTPKAAYELVSALKKRFGLPVHLHSHATTG 204 (582)
T ss_pred C------CCCCCcCHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 2 11235788888888888775 58999999988664
No 178
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=69.72 E-value=86 Score=28.83 Aligned_cols=112 Identities=13% Similarity=0.134 Sum_probs=57.6
Q ss_pred CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeC-CChhhHHHHHHHHHcCCcE
Q 015826 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGVLG 192 (399)
Q Consensus 114 ~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~G~~~ 192 (399)
+++.+....+.++..|+..+.-.+....-...+.+...+.++.......-++....+... ...+..+..+...+.|+++
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~ 95 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADG 95 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCE
Confidence 344556667778889999987665222222223333333333332111001112222222 2334555666666789998
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHH-HHHhcCCCEEEe
Q 015826 193 LKSFMCPSGINDFPMTNASHIKEGLS-VLARYKRPLLVH 230 (399)
Q Consensus 193 ik~~~~~~~~~~~~~~~~~~l~~~~~-~a~~~g~~v~~H 230 (399)
+-+.. + .+...+++.+.+-++ .+...++|+.++
T Consensus 96 v~v~p--P---~y~~~~~~~~~~~~~~ia~~~~~pi~iY 129 (281)
T cd00408 96 VLVVP--P---YYNKPSQEGIVAHFKAVADASDLPVILY 129 (281)
T ss_pred EEECC--C---cCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 86532 1 122245566655544 444578999887
No 179
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=69.32 E-value=75 Score=29.34 Aligned_cols=110 Identities=11% Similarity=0.083 Sum_probs=57.5
Q ss_pred CchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeC-CChhhHHHHHHHHHcCCcEEE
Q 015826 116 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGVLGLK 194 (399)
Q Consensus 116 e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~G~~~ik 194 (399)
+.+....+..+..|+..+.-+.....-...+.+...+.++.+.....-++....++.. ...+.++..+...+.|++++-
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~ 100 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAAL 100 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEE
Confidence 4455667778889999987665211111223343344333332111111222223322 234456666777778999886
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHH-HHhcCCCEEEe
Q 015826 195 SFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVH 230 (399)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~g~~v~~H 230 (399)
+.. + .+...+++++.+.++. +...++++.++
T Consensus 101 ~~~--P---~~~~~~~~~l~~~~~~ia~~~~~pi~lY 132 (284)
T cd00950 101 VVT--P---YYNKPSQEGLYAHFKAIAEATDLPVILY 132 (284)
T ss_pred Ecc--c---ccCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 532 1 1222355666665544 45568999987
No 180
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=68.02 E-value=84 Score=27.53 Aligned_cols=99 Identities=20% Similarity=0.156 Sum_probs=58.5
Q ss_pred hHHHHHHHHHcCCcEEEE-eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec--CChhhchhHHhhccCcCCchhhh
Q 015826 178 NASALEALLNAGVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA--EMEKGSERHVKLEDDTLDTRSYS 254 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~--~~~~~~~~~~~~~~~~~~~~~~~ 254 (399)
..++++++.+.|++.+.+ .|..+-+++ ..+.++.++++.+. .++++.+|. +++..
T Consensus 14 l~~~i~~l~~~g~d~lHiDiMDg~fvpn-~~~g~~~i~~i~~~---~~~~~DvHLMv~~P~~------------------ 71 (201)
T PF00834_consen 14 LEEEIKRLEEAGADWLHIDIMDGHFVPN-LTFGPDIIKAIRKI---TDLPLDVHLMVENPER------------------ 71 (201)
T ss_dssp HHHHHHHHHHTT-SEEEEEEEBSSSSSS-B-B-HHHHHHHHTT---SSSEEEEEEESSSGGG------------------
T ss_pred HHHHHHHHHHcCCCEEEEeecccccCCc-ccCCHHHHHHHhhc---CCCcEEEEeeeccHHH------------------
Confidence 456788888899998865 454432222 24577777766433 678999995 33321
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEcccc
Q 015826 255 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH 322 (399)
Q Consensus 255 ~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~ 322 (399)
-+...... |......|.-+.....+.++..|+.|..+-.-.+|.
T Consensus 72 -------------~i~~~~~~-----------g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~ 115 (201)
T PF00834_consen 72 -------------YIEEFAEA-----------GADYITFHAEATEDPKETIKYIKEAGIKAGIALNPE 115 (201)
T ss_dssp -------------HHHHHHHH-----------T-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TT
T ss_pred -------------HHHHHHhc-----------CCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECC
Confidence 12222222 333456666432256788899999999988888885
No 181
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=67.38 E-value=1.6e+02 Score=33.52 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh----cCCCEEEecCChhhchhHHhh
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR----YKRPLLVHAEMEKGSERHVKL 243 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~----~g~~v~~H~~~~~~~~~~~~~ 243 (399)
.+..+++++.|+.-|-+.+... .....++|.+++...+. .++|+++-..+++.++.+++.
T Consensus 387 l~~A~~qve~GA~iIDVn~g~~-----~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~ 450 (1229)
T PRK09490 387 LDVARQQVENGAQIIDINMDEG-----MLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKC 450 (1229)
T ss_pred HHHHHHHHHCCCCEEEECCCCC-----CCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhh
Confidence 4455677789998887754221 23456788888888875 489999999999888877765
No 182
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=65.99 E-value=85 Score=32.56 Aligned_cols=107 Identities=15% Similarity=0.074 Sum_probs=61.8
Q ss_pred HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC-ceeEEeeeeeeC-CC-hhhHHHHHHHHHcCCcEEEE
Q 015826 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVP-EN-AYNASALEALLNAGVLGLKS 195 (399)
Q Consensus 119 ~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~l~~l~~~G~~~ik~ 195 (399)
....+.++++|+..++-+- . ......+....+.+...+ .+.........+ .+ ....+..+++.+.|++.|.+
T Consensus 99 ~~~v~~A~~~Gvd~irif~-~----lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i 173 (592)
T PRK09282 99 EKFVEKAAENGIDIFRIFD-A----LNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICI 173 (592)
T ss_pred HHHHHHHHHCCCCEEEEEE-e----cChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3446778899999877553 1 112344444444444322 222222111111 11 12345566777889987654
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015826 196 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (399)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 236 (399)
- . -.....++.+.++++..++ .++++.+|++|...
T Consensus 174 ~--D----t~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~G 209 (592)
T PRK09282 174 K--D----MAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSG 209 (592)
T ss_pred C--C----cCCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 2 1 1235788888888888775 58999999988664
No 183
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=64.88 E-value=1.2e+02 Score=28.27 Aligned_cols=108 Identities=13% Similarity=0.008 Sum_probs=56.1
Q ss_pred CchHHHHHHHHcCC-eeeeecCcCCCCCCCCcHHHHHHHHHHHhc--cCceeEEeeeeee-CCChhhHHHHHHHHHcCCc
Q 015826 116 EGFPSGTKAAAAGG-ITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLV-PENAYNASALEALLNAGVL 191 (399)
Q Consensus 116 e~~~~~~~~al~~G-vTtv~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~G~~ 191 (399)
+.+....+..+..| ++.++-.+........+.+...+..+.... ...+.+ ..++. ....+.++..+...+.|++
T Consensus 21 ~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pv--i~gv~~~~t~~~i~la~~a~~~Gad 98 (290)
T TIGR00683 21 KGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIAL--IAQVGSVNLKEAVELGKYATELGYD 98 (290)
T ss_pred HHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcE--EEecCCCCHHHHHHHHHHHHHhCCC
Confidence 34556667778889 999877652222222334433333332221 111222 22222 2234456666666778999
Q ss_pred EEEEeecCCCCCCCCCCCHHHHHHHHHHH-Hhc-CCCEEEe
Q 015826 192 GLKSFMCPSGINDFPMTNASHIKEGLSVL-ARY-KRPLLVH 230 (399)
Q Consensus 192 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~a-~~~-g~~v~~H 230 (399)
++-+.. | .+...+.+++.+-++.. .+. ++++.+.
T Consensus 99 ~v~v~~-P----~y~~~~~~~i~~yf~~v~~~~~~lpv~lY 134 (290)
T TIGR00683 99 CLSAVT-P----FYYKFSFPEIKHYYDTIIAETGGLNMIVY 134 (290)
T ss_pred EEEEeC-C----cCCCCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 886632 1 12234566666665554 445 6888765
No 184
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=64.83 E-value=1.2e+02 Score=28.99 Aligned_cols=103 Identities=12% Similarity=-0.011 Sum_probs=58.4
Q ss_pred HHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCc-eeEEeeeeeeCCChh-hHHHHHHHHHcCCcEEEEeec
Q 015826 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY-VDVGFWGGLVPENAY-NASALEALLNAGVLGLKSFMC 198 (399)
Q Consensus 121 ~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~l~~l~~~G~~~ik~~~~ 198 (399)
..+.+...|+..++-.. . ....+...+.++.++..+. +.+.+... ...+++ ..+..+.+.+.|+..|.+ .
T Consensus 92 dl~~a~~~gvd~iri~~-~----~~e~d~~~~~i~~ak~~G~~v~~~l~~s-~~~~~e~l~~~a~~~~~~Ga~~i~i--~ 163 (333)
T TIGR03217 92 DLKAAYDAGARTVRVAT-H----CTEADVSEQHIGMARELGMDTVGFLMMS-HMTPPEKLAEQAKLMESYGADCVYI--V 163 (333)
T ss_pred HHHHHHHCCCCEEEEEe-c----cchHHHHHHHHHHHHHcCCeEEEEEEcc-cCCCHHHHHHHHHHHHhcCCCEEEE--c
Confidence 45778888998877443 1 1122344555555554432 12222111 112222 234445555679987744 2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-cC--CCEEEecCChh
Q 015826 199 PSGINDFPMTNASHIKEGLSVLAR-YK--RPLLVHAEMEK 235 (399)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~a~~-~g--~~v~~H~~~~~ 235 (399)
. ......++++.+.++..++ ++ +++.+|++|..
T Consensus 164 D----T~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hnnl 199 (333)
T TIGR03217 164 D----SAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNL 199 (333)
T ss_pred c----CCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Confidence 2 2235788899999888876 34 88999998754
No 185
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=64.63 E-value=53 Score=30.45 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh---cCCCEEEecC
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAE 232 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~ 232 (399)
.+.++.+++.|+.++-+.-+ . .....++.++-.++++.+.+ -++++.+++.
T Consensus 25 ~~~i~~l~~~Gv~gl~~~Gs-t--GE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~ 78 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLGS-T--GEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG 78 (289)
T ss_dssp HHHHHHHHHTTSSEEEESST-T--TTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEECCC-C--cccccCCHHHHHHHHHHHHHHccCceEEEecCc
Confidence 44556666788888754321 1 23456777777777776654 2456777653
No 186
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=64.38 E-value=53 Score=30.53 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecC
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAE 232 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~ 232 (399)
.+.++.+++.|+.++-+.-+ . ..++.++.++-.++++.+.+. +++|.+|+.
T Consensus 24 ~~l~~~l~~~Gv~gi~v~Gs-t--GE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~ 77 (289)
T cd00951 24 RAHVEWLLSYGAAALFAAGG-T--GEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG 77 (289)
T ss_pred HHHHHHHHHcCCCEEEECcC-C--cCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC
Confidence 34566667789988754311 1 235577888888877766553 478888874
No 187
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=64.23 E-value=1.2e+02 Score=27.96 Aligned_cols=104 Identities=13% Similarity=0.007 Sum_probs=59.4
Q ss_pred HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeee---eCCChh-hHHHHHHHHHcCCcEEEE
Q 015826 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL---VPENAY-NASALEALLNAGVLGLKS 195 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~l~~l~~~G~~~ik~ 195 (399)
...+.+...|+..++-.. + ....+.+....+.++..+. .+.+.... ...+.+ ..+.++++.+.|++.|.+
T Consensus 95 ~di~~~~~~g~~~iri~~----~-~~~~~~~~~~i~~ak~~G~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l 168 (275)
T cd07937 95 LFVEKAAKNGIDIFRIFD----A-LNDVRNLEVAIKAVKKAGK-HVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICI 168 (275)
T ss_pred HHHHHHHHcCCCEEEEee----c-CChHHHHHHHHHHHHHCCC-eEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 345667788888766543 1 1224455555555544332 22221111 111222 234455666789987754
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChh
Q 015826 196 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEK 235 (399)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~ 235 (399)
. +.....+++.+..+++..++ .++++.+|++|..
T Consensus 169 ~------DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~ 203 (275)
T cd07937 169 K------DMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTS 203 (275)
T ss_pred c------CCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 2 12235788899988888776 4789999998754
No 188
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=63.72 E-value=1.1e+02 Score=28.49 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=56.8
Q ss_pred CcCchHHHHHHHHc-CCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeee-CCChhhHHHHHHHHHcCCc
Q 015826 114 EWEGFPSGTKAAAA-GGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-PENAYNASALEALLNAGVL 191 (399)
Q Consensus 114 ~~e~~~~~~~~al~-~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~G~~ 191 (399)
+.+.+....+..+. .|+..++-.+........+.+...+.++.......-.+....+.. ....+.++..+...+.|++
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad 101 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYD 101 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 33445666777888 999998766522221222333333333322211000111112221 2234455666677788999
Q ss_pred EEEEeecCCCCCCCCCCCHHHHHHHHH-HHHhcCCCEEEe
Q 015826 192 GLKSFMCPSGINDFPMTNASHIKEGLS-VLARYKRPLLVH 230 (399)
Q Consensus 192 ~ik~~~~~~~~~~~~~~~~~~l~~~~~-~a~~~g~~v~~H 230 (399)
++-+.. | .+...+.+.+.+-++ .+...++|+.+.
T Consensus 102 ~v~v~~-P----~y~~~~~~~l~~~f~~va~a~~lPv~iY 136 (293)
T PRK04147 102 AISAVT-P----FYYPFSFEEICDYYREIIDSADNPMIVY 136 (293)
T ss_pred EEEEeC-C----cCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 886542 1 111234555555444 455678899887
No 189
>PLN02417 dihydrodipicolinate synthase
Probab=63.40 E-value=50 Score=30.55 Aligned_cols=52 Identities=10% Similarity=-0.016 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecCC
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEM 233 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~ 233 (399)
.+.++.+++.|+.++-+.- .. ..++.++.++-+++++.+.+. .+++.+++..
T Consensus 25 ~~~i~~l~~~Gv~Gi~~~G-st--GE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~ 79 (280)
T PLN02417 25 DSLVNMQIENGAEGLIVGG-TT--GEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS 79 (280)
T ss_pred HHHHHHHHHcCCCEEEECc-cC--cchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 3455666778888875421 11 234567888888887766653 3677777643
No 190
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=63.19 E-value=72 Score=31.00 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 236 (399)
.+.++.+.+.|+..|.+. . .....+++++.++++..++ .++++.+|++|...
T Consensus 148 ~~~~~~~~~~Ga~~I~l~--D----T~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~G 200 (378)
T PRK11858 148 IEFAKAAEEAGADRVRFC--D----TVGILDPFTMYELVKELVEAVDIPIEVHCHNDFG 200 (378)
T ss_pred HHHHHHHHhCCCCEEEEe--c----cCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCcC
Confidence 344455566898876542 1 1235688888888887765 48999999988653
No 191
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=63.14 E-value=58 Score=30.14 Aligned_cols=52 Identities=8% Similarity=0.176 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecCC
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEM 233 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~ 233 (399)
.+.++.+++.|+.++-+. ... ...+.++.++-+++++.+.+. .++|.+|+..
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~-Gst--GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~ 76 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVV-GTT--GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS 76 (285)
T ss_pred HHHHHHHHHcCCCEEEEC-ccC--cccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 445666677888887542 111 234567888877777766653 3677777643
No 192
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=62.30 E-value=73 Score=29.44 Aligned_cols=51 Identities=12% Similarity=0.025 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
.+.++.+++.|+.++-+. ... ..++.++.++-+++++.+.+....+.+|+.
T Consensus 23 ~~li~~l~~~Gv~Gl~~~-Gst--GE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg 73 (279)
T cd00953 23 KKHCENLISKGIDYVFVA-GTT--GLGPSLSFQEKLELLKAYSDITDKVIFQVG 73 (279)
T ss_pred HHHHHHHHHcCCcEEEEc-ccC--CCcccCCHHHHHHHHHHHHHHcCCEEEEeC
Confidence 345666677898887542 111 235678888888888777665445666653
No 193
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=62.15 E-value=55 Score=28.90 Aligned_cols=74 Identities=22% Similarity=0.217 Sum_probs=51.4
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCC
Q 015826 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKT 259 (399)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (399)
..++-+.+.|..++|.|.-.. ....++++++.+.|.++|.++ |-..-+ +
T Consensus 139 tAiaml~dmG~~SiKffPM~G------l~~leE~~avA~aca~~g~~l----EPTGGI-----------d---------- 187 (236)
T TIGR03581 139 TAIAMLKDMGGSSVKFFPMGG------LKHLEEYAAVAKACAKHGFYL----EPTGGI-----------D---------- 187 (236)
T ss_pred HHHHHHHHcCCCeeeEeecCC------cccHHHHHHHHHHHHHcCCcc----CCCCCc-----------c----------
Confidence 456666678999999873321 357799999999999999873 211110 0
Q ss_pred CChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC
Q 015826 260 RPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 297 (399)
Q Consensus 260 ~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~ 297 (399)
...+.++++++.++ |++-.+-|+-+
T Consensus 188 ------l~Nf~~I~~i~lda-------Gv~kviPHIYs 212 (236)
T TIGR03581 188 ------LDNFEEIVQIALDA-------GVEKVIPHVYS 212 (236)
T ss_pred ------HHhHHHHHHHHHHc-------CCCeeccccce
Confidence 22456777888875 88888999854
No 194
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=61.76 E-value=58 Score=30.30 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=30.2
Q ss_pred HHHHHHHHHcC-CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecC
Q 015826 179 ASALEALLNAG-VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAE 232 (399)
Q Consensus 179 ~~~l~~l~~~G-~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~ 232 (399)
.+.++.+++.| +.++-+.- .. .....++.+|-+++++.+.+. .++|.+|+.
T Consensus 24 ~~~i~~~i~~G~v~gi~~~G-st--GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~ 78 (290)
T TIGR00683 24 RQIIRHNIDKMKVDGLYVGG-ST--GENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG 78 (290)
T ss_pred HHHHHHHHhCCCcCEEEECC-cc--cccccCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 44556666788 88764421 11 234567777777777665543 356777764
No 195
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=61.65 E-value=90 Score=35.17 Aligned_cols=106 Identities=19% Similarity=0.155 Sum_probs=61.0
Q ss_pred HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC-ceeE--EeeeeeeC-C----Chh-hHHHHHHHHHcCC
Q 015826 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDV--GFWGGLVP-E----NAY-NASALEALLNAGV 190 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~-~----~~~-~~~~l~~l~~~G~ 190 (399)
...+.+.++|+..++.+-. ..+.+.++..++.+...+ .+.. .+.+.+.+ . +.+ ..+..+++.+.|+
T Consensus 629 ~f~~~~~~~GidifrifD~-----lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Ga 703 (1143)
T TIGR01235 629 YFVKQAAQGGIDIFRVFDS-----LNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGA 703 (1143)
T ss_pred HHHHHHHHcCCCEEEECcc-----CcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 3456778999999876531 123445555555544322 2222 22211111 1 111 2345566777899
Q ss_pred cEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015826 191 LGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (399)
Q Consensus 191 ~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 236 (399)
..|.+- +-....++..+..+++..++ .++++++|+++...
T Consensus 704 d~I~ik------Dt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~G 744 (1143)
T TIGR01235 704 HILGIK------DMAGLLKPAAAKLLIKALREKTDLPIHFHTHDTSG 744 (1143)
T ss_pred CEEEEC------CCcCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 876542 11235788888888888775 59999999988653
No 196
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=61.63 E-value=1.1e+02 Score=28.49 Aligned_cols=110 Identities=12% Similarity=0.087 Sum_probs=55.8
Q ss_pred CchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeC-CChhhHHHHHHHHHcCCcEEE
Q 015826 116 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGVLGLK 194 (399)
Q Consensus 116 e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~G~~~ik 194 (399)
+.+....+..+..|+..++-.+....-...+.+...+..+.+.....-++....++.. ...+.++..+...+.|++++-
T Consensus 22 ~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~ 101 (292)
T PRK03170 22 AALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGAL 101 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEE
Confidence 3455667778889999987554111111223333333333222110001112222222 234556666677778999886
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHH-HHhcCCCEEEe
Q 015826 195 SFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVH 230 (399)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~g~~v~~H 230 (399)
+.. + .+...+++++.+-++. +...++++.+.
T Consensus 102 ~~p--P---~~~~~~~~~i~~~~~~ia~~~~~pv~lY 133 (292)
T PRK03170 102 VVT--P---YYNKPTQEGLYQHFKAIAEATDLPIILY 133 (292)
T ss_pred ECC--C---cCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 532 1 1222355666655544 55678998887
No 197
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=61.12 E-value=93 Score=30.25 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCc
Q 015826 209 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288 (399)
Q Consensus 209 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~ 288 (399)
+...+..++..+.+.|+...+||..... + ..-++.++.+..-
T Consensus 225 p~~~f~~vl~~~~~~gi~~t~HaGE~~~------------~----------------~~~v~~~LD~l~~---------- 266 (399)
T KOG1097|consen 225 PLSLFLEVLAKAPAKGIHLTFHAGETNG------------G----------------ASVVKNALDLLGT---------- 266 (399)
T ss_pred ChhhhHHHHHhhhhcCCcEEEEccccCC------------C----------------hHHHHHHHHhhCC----------
Confidence 3445666777777799999999953210 0 1134445553221
Q ss_pred eEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCC
Q 015826 289 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSD 368 (399)
Q Consensus 289 ~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sd 368 (399)
=.|.|.....+.-++++.+++++ |-.|+||.. +-..++.+++|.- .+.+-+++|+.-+|+||
T Consensus 267 -~RIGHG~~l~~dp~L~~~~k~~n--I~lEiCP~S-----------N~vl~~v~d~rnh----p~~~~~~~~vP~vI~sD 328 (399)
T KOG1097|consen 267 -ERIGHGYFLTKDPELINLLKSRN--IALEICPIS-----------NQVLGLVSDLRNH----PVARLLAAGVPVVINSD 328 (399)
T ss_pred -ccccCceeccCCHHHHHHHHhcC--ceEEEccch-----------hhheecccccccc----HHHHHHhCCCCEEEeCC
Confidence 13666542113346888888874 566778841 1122333444444 24456778999999999
Q ss_pred CC
Q 015826 369 HS 370 (399)
Q Consensus 369 h~ 370 (399)
--
T Consensus 329 DP 330 (399)
T KOG1097|consen 329 DP 330 (399)
T ss_pred Cc
Confidence 63
No 198
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=61.08 E-value=23 Score=32.64 Aligned_cols=110 Identities=21% Similarity=0.139 Sum_probs=57.5
Q ss_pred hHHHHHHHHcCCeeeee-cCcCCC---CC-----CCCcHHHHHHHHHHHhccCceeEEeeeeeeC------CChhhHHHH
Q 015826 118 FPSGTKAAAAGGITTLI-DMPLNS---DP-----STISTETLKLKVDAAEKRIYVDVGFWGGLVP------ENAYNASAL 182 (399)
Q Consensus 118 ~~~~~~~al~~GvTtv~-d~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l 182 (399)
...-..-|.+.|+--++ |-.... .. .......+.+..+-++.++ +.+-.+..... -..+..+.+
T Consensus 34 ~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~Kg-Vgi~lw~~~~~~~~~~~~~~~~~~~f 112 (273)
T PF10566_consen 34 QKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKG-VGIWLWYHSETGGNVANLEKQLDEAF 112 (273)
T ss_dssp HHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT--EEEEEEECCHTTBHHHHHCCHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcC-CCEEEEEeCCcchhhHhHHHHHHHHH
Confidence 33445667788888754 333210 00 0011234455555554443 23333322111 011235667
Q ss_pred HHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 183 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 183 ~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
+.+.+-|+.+||+-+... + .+.--+..+++++.|+++.+.|.+|-.
T Consensus 113 ~~~~~~Gv~GvKidF~~~--d--~Q~~v~~y~~i~~~AA~~~LmvnfHg~ 158 (273)
T PF10566_consen 113 KLYAKWGVKGVKIDFMDR--D--DQEMVNWYEDILEDAAEYKLMVNFHGA 158 (273)
T ss_dssp HHHHHCTEEEEEEE--SS--T--SHHHHHHHHHHHHHHHHTT-EEEETTS
T ss_pred HHHHHcCCCEEeeCcCCC--C--CHHHHHHHHHHHHHHHHcCcEEEecCC
Confidence 777889999999843322 1 123346778999999999999999953
No 199
>PRK15108 biotin synthase; Provisional
Probab=60.83 E-value=1.1e+02 Score=29.20 Aligned_cols=110 Identities=15% Similarity=0.042 Sum_probs=63.6
Q ss_pred CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEE
Q 015826 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL 193 (399)
Q Consensus 114 ~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~i 193 (399)
+.+.+...++.+...|++.+........|.....+.+...++..+... +..... .+. ...+.++++.++|++.+
T Consensus 77 s~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~-i~v~~s----~G~-ls~e~l~~LkeAGld~~ 150 (345)
T PRK15108 77 EVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMG-LETCMT----LGT-LSESQAQRLANAGLDYY 150 (345)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCC-CEEEEe----CCc-CCHHHHHHHHHcCCCEE
Confidence 345566677777889999985432112343334455555555554322 222111 111 23577888999999977
Q ss_pred EEeecCCCCCCC----CCCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 194 KSFMCPSGINDF----PMTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 194 k~~~~~~~~~~~----~~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
-+.+.... ..+ +.-+-+...+.++.|++.|+.+..|
T Consensus 151 n~~leT~p-~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg 190 (345)
T PRK15108 151 NHNLDTSP-EFYGNIITTRTYQERLDTLEKVRDAGIKVCSG 190 (345)
T ss_pred eeccccCh-HhcCCCCCCCCHHHHHHHHHHHHHcCCceeeE
Confidence 65432210 111 1235667778889999999988876
No 200
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=60.55 E-value=89 Score=28.30 Aligned_cols=96 Identities=16% Similarity=0.039 Sum_probs=51.1
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHH
Q 015826 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 269 (399)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v 269 (399)
++.+|+.... ...++.+.+++.++.++++|+.+..=- ...+.... ...+
T Consensus 38 ID~~K~g~Gt-----~~l~~~~~l~eki~l~~~~gV~v~~GG----tl~E~a~~----------------------q~~~ 86 (244)
T PF02679_consen 38 IDFLKFGWGT-----SALYPEEILKEKIDLAHSHGVYVYPGG----TLFEVAYQ----------------------QGKF 86 (244)
T ss_dssp -SEEEE-TTG-----GGGSTCHHHHHHHHHHHCTT-EEEE-H----HHHHHHHH----------------------TT-H
T ss_pred ccEEEecCce-----eeecCHHHHHHHHHHHHHcCCeEeCCc----HHHHHHHh----------------------cChH
Confidence 4566664322 124566788888888888888876521 00000000 1145
Q ss_pred HHHHHHHhhhccCCCCCCceEEEEcCCC---hhHHHHHHHHHHHCCCCEEEEcccc
Q 015826 270 RELLTVAKDTRTDGPAEGAHLHIVHLSD---ASSSLDLLMEAKTNGDSITVETCPH 322 (399)
Q Consensus 270 ~~~~~~a~~~~~~~~~~g~~vhi~H~s~---~~~~l~~i~~ak~~G~~vt~e~~p~ 322 (399)
.+.++.+++.++. .+-|+-.+. .++-.++|+.++++|..|..|+-..
T Consensus 87 ~~yl~~~k~lGf~------~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K 136 (244)
T PF02679_consen 87 DEYLEECKELGFD------AIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKK 136 (244)
T ss_dssp HHHHHHHHHCT-S------EEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-S
T ss_pred HHHHHHHHHcCCC------EEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCC
Confidence 6666777765321 144444331 1256788888888888888888643
No 201
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=60.34 E-value=60 Score=30.13 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecCC
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEM 233 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~ 233 (399)
.+.++.+++.|+.++-+. ... .....++.++-.++++.+.+. ++++.+|+..
T Consensus 25 ~~~i~~l~~~Gv~gi~~~-Gs~--GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~ 79 (292)
T PRK03170 25 RKLVDYLIANGTDGLVVV-GTT--GESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS 79 (292)
T ss_pred HHHHHHHHHcCCCEEEEC-CcC--CccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC
Confidence 345666677888887542 111 234567888877777766653 4677777643
No 202
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=59.58 E-value=99 Score=28.61 Aligned_cols=107 Identities=10% Similarity=0.132 Sum_probs=56.1
Q ss_pred CchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHH----HhccCceeEEeeeeeeC-CChhhHHHHHHHHHcCC
Q 015826 116 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA----AEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGV 190 (399)
Q Consensus 116 e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~G~ 190 (399)
+.+....+..+..|+..++-.+........+.+...+..+. +.++.. ...++.. ...+.++..+...+.|+
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~----vi~gv~~~st~~~i~~a~~a~~~Ga 97 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVP----VIAGVGANSTEEAIELARHAQDAGA 97 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSE----EEEEEESSSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceE----EEecCcchhHHHHHHHHHHHhhcCc
Confidence 34556677788999999877652111111233333333322 222322 2222322 34456677777778999
Q ss_pred cEEEEeecCCCCCCCCCCCHHHHHHHH-HHHHhcCCCEEEec
Q 015826 191 LGLKSFMCPSGINDFPMTNASHIKEGL-SVLARYKRPLLVHA 231 (399)
Q Consensus 191 ~~ik~~~~~~~~~~~~~~~~~~l~~~~-~~a~~~g~~v~~H~ 231 (399)
+++-+.. | .+...+.+.+.+-+ +.+...++|+.++-
T Consensus 98 d~v~v~~-P----~~~~~s~~~l~~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 98 DAVLVIP-P----YYFKPSQEELIDYFRAIADATDLPIIIYN 134 (289)
T ss_dssp SEEEEEE-S----TSSSCCHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred eEEEEec-c----ccccchhhHHHHHHHHHHhhcCCCEEEEE
Confidence 9886542 2 12234555555554 44555789999874
No 203
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=59.39 E-value=1.2e+02 Score=28.40 Aligned_cols=110 Identities=13% Similarity=0.069 Sum_probs=57.2
Q ss_pred CchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeee-CCChhhHHHHHHHHHcCCcEEE
Q 015826 116 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-PENAYNASALEALLNAGVLGLK 194 (399)
Q Consensus 116 e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~G~~~ik 194 (399)
+.+.......+..||..++-.+....-...+.+...+..+.+.....-++....+.. ....+.++..+...+.|++++-
T Consensus 29 ~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vl 108 (309)
T cd00952 29 DETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTM 108 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEE
Confidence 445666777889999998866521111222333333333332211111111222222 2334556666677778999886
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHHH-Hhc-CCCEEEe
Q 015826 195 SFMCPSGINDFPMTNASHIKEGLSVL-ARY-KRPLLVH 230 (399)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~a-~~~-g~~v~~H 230 (399)
+.. | .+...+.+.+.+-++.. ... ++|+.+.
T Consensus 109 v~~-P----~y~~~~~~~l~~yf~~va~a~~~lPv~iY 141 (309)
T cd00952 109 LGR-P----MWLPLDVDTAVQFYRDVAEAVPEMAIAIY 141 (309)
T ss_pred ECC-C----cCCCCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 532 1 12223566666665554 456 5888886
No 204
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=58.97 E-value=1.4e+02 Score=27.65 Aligned_cols=108 Identities=10% Similarity=0.090 Sum_probs=55.4
Q ss_pred CchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhc--cCceeEEeeeeeeC-CChhhHHHHHHHHHcCCcE
Q 015826 116 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLVP-ENAYNASALEALLNAGVLG 192 (399)
Q Consensus 116 e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~G~~~ 192 (399)
+.+.......+..|+..++..+....-...+.+...+..+.... ...+. ...+... ...+.++..+...+.|+++
T Consensus 19 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~--vi~gv~~~s~~~~i~~a~~a~~~Gad~ 96 (285)
T TIGR00674 19 AALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVP--VIAGTGSNATEEAISLTKFAEDVGADG 96 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCe--EEEeCCCccHHHHHHHHHHHHHcCCCE
Confidence 34556667778899999876642111112233333333332211 11122 2222222 2334556666667789998
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHH-HHHhcCCCEEEe
Q 015826 193 LKSFMCPSGINDFPMTNASHIKEGLS-VLARYKRPLLVH 230 (399)
Q Consensus 193 ik~~~~~~~~~~~~~~~~~~l~~~~~-~a~~~g~~v~~H 230 (399)
+-+..- .+...+++++.+.++ .+.+.++++.+.
T Consensus 97 v~v~pP-----~y~~~~~~~i~~~~~~i~~~~~~pi~lY 130 (285)
T TIGR00674 97 FLVVTP-----YYNKPTQEGLYQHFKAIAEEVDLPIILY 130 (285)
T ss_pred EEEcCC-----cCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 865321 112235566655554 455678998876
No 205
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=58.90 E-value=1.8e+02 Score=28.16 Aligned_cols=165 Identities=15% Similarity=0.054 Sum_probs=79.6
Q ss_pred HHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeee-------eC-CChhhHHHHHHHHHcCCcEE
Q 015826 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL-------VP-ENAYNASALEALLNAGVLGL 193 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~l~~l~~~G~~~i 193 (399)
.+.|.+.|.-|+.|+..+ .....++.++-....-..-.+..+..+ .. ...+.+..+++..++|++.+
T Consensus 84 ~~~A~~~GADtvMDLStG-----gdl~eiR~~ii~~s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~~~v~~qa~~GVdfm 158 (432)
T COG0422 84 AVWAIKWGADTVMDLSTG-----GDLHEIREWIIRNSPVPVGTVPIYQALEEVNGKVEDLTEDDFFDTVEKQAEQGVDFM 158 (432)
T ss_pred HHHHHHhCcceeEecccC-----CCHHHHHHHHHhcCCCCcCCchHHHHHHHHhcchhhCCHHHHHHHHHHHHHhCCcEE
Confidence 567889999999998621 123334433322221111111111111 01 11224566677777887765
Q ss_pred EEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHH
Q 015826 194 KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 273 (399)
Q Consensus 194 k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~ 273 (399)
.+.. ...++.++..++.|...-+=++.-..+..-....+ +.+| +. +....++
T Consensus 159 TIHa-------------GV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~-~ENp------------ly--~~fd~ll 210 (432)
T COG0422 159 TIHA-------------GVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNH-KENP------------LY--EHFDELL 210 (432)
T ss_pred Eeeh-------------hhhHHHHHHHHhcCceeeeeccchHHHHHHHHHcC-CcCc------------hh--hhHHHHH
Confidence 4421 23444555556655555554554443322222111 1111 11 2356667
Q ss_pred HHHhhhccCCCCCCceEEEEcC---------CCh------hHHHHHHHHHHHCCCCEEEEccccccccc
Q 015826 274 TVAKDTRTDGPAEGAHLHIVHL---------SDA------SSSLDLLMEAKTNGDSITVETCPHYLAFS 327 (399)
Q Consensus 274 ~~a~~~~~~~~~~g~~vhi~H~---------s~~------~~~l~~i~~ak~~G~~vt~e~~p~~L~~~ 327 (399)
++++++ ++-+.+.-. +.. ...-++.++|+++|+.+..| -|.|.-++
T Consensus 211 eI~k~y-------DvtlSLGDglRPG~i~DA~D~aQ~~EL~tlgeL~krA~~~gVQvmvE-GPGHvpl~ 271 (432)
T COG0422 211 EIFKEY-------DVTLSLGDGLRPGCIADANDEAQFAELITLGELTKRAWEAGVQVMVE-GPGHVPLN 271 (432)
T ss_pred HHHHHh-------CeeeeccCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHcCCEEEEE-CCCcCcHH
Confidence 777765 333222221 111 02235667788888888888 66666665
No 206
>PRK08444 hypothetical protein; Provisional
Probab=58.63 E-value=96 Score=29.85 Aligned_cols=55 Identities=11% Similarity=-0.016 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhh
Q 015826 177 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 236 (399)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 236 (399)
+..+..++..+.|+..+.+..+. .|..+.+.+.++++..++.--.+.+|+-++.+
T Consensus 84 eI~~~a~~a~~~G~~ei~iv~G~-----~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~E 138 (353)
T PRK08444 84 EILEIVKNSVKRGIKEVHIVSAH-----NPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAE 138 (353)
T ss_pred HHHHHHHHHHHCCCCEEEEeccC-----CCCCCHHHHHHHHHHHHHHCCCceEeeCCHHH
Confidence 34555666667788777654321 12345667777777777643347777644433
No 207
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=58.10 E-value=12 Score=31.27 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=24.3
Q ss_pred eecccccCCCCCCCcCchHHHHHHHHcCCeeeeecC
Q 015826 101 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM 136 (399)
Q Consensus 101 ID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~ 136 (399)
||.|+|..........+.....+.|.+.|++++.-.
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~~~Gl~~i~iT 36 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAKEKGLDAIAIT 36 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHHHTTESEEEEE
T ss_pred CCccccccCcchhhcCCHHHHHHHHHHcCCCEEEEc
Confidence 799999876523333456677888999999987533
No 208
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=57.91 E-value=1.5e+02 Score=27.00 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHcCCcEEEEeecCCCCCCC-CCCCHH---HHHHHHHHHHhc-CCCEEEecCChhhchhHHhhccCcCCch
Q 015826 177 YNASALEALLNAGVLGLKSFMCPSGINDF-PMTNAS---HIKEGLSVLARY-KRPLLVHAEMEKGSERHVKLEDDTLDTR 251 (399)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~~~~~~~~~~-~~~~~~---~l~~~~~~a~~~-g~~v~~H~~~~~~~~~~~~~~~~~~~~~ 251 (399)
...+...++++.|++-|-+...... ++. +....+ .+..+++..++. +.++.+-..+++.++.+++.+- +..
T Consensus 25 ~~~~~a~~~~~~GAdiIDvG~~st~-p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~---~iI 100 (258)
T cd00423 25 KALEHARRMVEEGADIIDIGGESTR-PGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKAGA---DII 100 (258)
T ss_pred HHHHHHHHHHHCCCCEEEECCCcCC-CCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCC---CEE
Confidence 3456677788899987766432211 111 111223 455666666655 8999998888888777765431 111
Q ss_pred hhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC-----------h-------hHHHHHHHHHHHCCC
Q 015826 252 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD-----------A-------SSSLDLLMEAKTNGD 313 (399)
Q Consensus 252 ~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~-----------~-------~~~l~~i~~ak~~G~ 313 (399)
....+.... .+++.+++++ |+++.+.|... . ....+.++.+.+.|+
T Consensus 101 Ndis~~~~~---------~~~~~l~~~~-------~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi 164 (258)
T cd00423 101 NDVSGGRGD---------PEMAPLAAEY-------GAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGI 164 (258)
T ss_pred EeCCCCCCC---------hHHHHHHHHc-------CCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCC
Confidence 111111100 2345566654 88899999643 0 133455666777886
Q ss_pred ---CEEEEcc
Q 015826 314 ---SITVETC 320 (399)
Q Consensus 314 ---~vt~e~~ 320 (399)
++..|..
T Consensus 165 ~~~~IilDPg 174 (258)
T cd00423 165 PPEDIILDPG 174 (258)
T ss_pred CHHHEEEeCC
Confidence 3566643
No 209
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=56.49 E-value=80 Score=29.04 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecCC
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEM 233 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~ 233 (399)
.+.++.+++.|+.++-+. ... ..+..++.++-+++++.+.+. .+++.+|+..
T Consensus 21 ~~~i~~l~~~Gv~gi~~~-Gst--GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~ 75 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVL-GTT--GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA 75 (281)
T ss_pred HHHHHHHHHcCCCEEEEC-CCC--cccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 455666677899887542 221 234567888888887776653 4778888744
No 210
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=55.41 E-value=85 Score=29.25 Aligned_cols=51 Identities=10% Similarity=0.029 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh---cCCCEEEecC
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAE 232 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~ 232 (399)
.+.++.+++.|+.++-+. ... ..++.++.++-.++++.+.+ -+++|.+|+.
T Consensus 24 ~~lv~~~~~~Gv~gi~v~-Gst--GE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~ 77 (294)
T TIGR02313 24 RELIEFQIEGGSHAISVG-GTS--GEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG 77 (294)
T ss_pred HHHHHHHHHcCCCEEEEC-ccC--cccccCCHHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 344555666788776432 111 23456777777766665443 2366777764
No 211
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=55.21 E-value=45 Score=32.32 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhccCCCCCCceEEEEcCCC---------h------hHHHHHHHHHHHCCCCEEEEcccccccccc
Q 015826 268 AIRELLTVAKDTRTDGPAEGAHLHIVHLSD---------A------SSSLDLLMEAKTNGDSITVETCPHYLAFSA 328 (399)
Q Consensus 268 ~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~---------~------~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~ 328 (399)
...+++++++++ ++-+.+.-.-. . -.--++.++++++|+.+..| -|.|.-++.
T Consensus 203 ~fD~lLeI~k~y-------DVtLSLGDglRPG~i~Da~D~aQi~EL~~lgeL~~rA~e~gVQvMVE-GPGHVPl~~ 270 (420)
T PF01964_consen 203 HFDRLLEIAKEY-------DVTLSLGDGLRPGCIADATDRAQIQELIILGELVKRAREAGVQVMVE-GPGHVPLNQ 270 (420)
T ss_dssp THHHHHHHHTTT-------T-EEEE--TT--SSGGGTT-HHHHHHHHHHHHHHHHHHHTT--EEEE-E-SB--GGG
T ss_pred hHHHHHHHHHHh-------CeeEecccccCCCCcCCCCcHHHHHHHHHHHHHHHHHHHCCCeEEee-CCCCCCHHH
Confidence 568889999976 66665554321 0 02246678899999999999 588877763
No 212
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=55.04 E-value=1.8e+02 Score=27.07 Aligned_cols=108 Identities=11% Similarity=0.088 Sum_probs=55.7
Q ss_pred CchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhc--cCceeEEeeeeee-CCChhhHHHHHHHHHcCCcE
Q 015826 116 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLV-PENAYNASALEALLNAGVLG 192 (399)
Q Consensus 116 e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~G~~~ 192 (399)
+.+....+..+..||..++-.+........+.+...+.++.... ...+.+ ..+.. ....+.++..+...+.|+++
T Consensus 21 ~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pv--i~gv~~~~t~~ai~~a~~A~~~Gad~ 98 (294)
T TIGR02313 21 EALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPF--APGTGALNHDETLELTKFAEEAGADA 98 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcE--EEECCcchHHHHHHHHHHHHHcCCCE
Confidence 34556677788999999876652222222233333333332211 111222 12222 23344566666667789998
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHHH-HHhc-CCCEEEe
Q 015826 193 LKSFMCPSGINDFPMTNASHIKEGLSV-LARY-KRPLLVH 230 (399)
Q Consensus 193 ik~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~-g~~v~~H 230 (399)
+-+.. + .+...+++.+.+-++. +... ++|+.+.
T Consensus 99 v~v~p--P---~y~~~~~~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 99 AMVIV--P---YYNKPNQEALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred EEEcC--c---cCCCCCHHHHHHHHHHHHHhccCCCEEEE
Confidence 76532 1 1122355666655544 5556 7888876
No 213
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=54.95 E-value=1.6e+02 Score=26.43 Aligned_cols=30 Identities=3% Similarity=0.001 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecCChhhc
Q 015826 208 TNASHIKEGLSVLARYKRPLLVHAEMEKGS 237 (399)
Q Consensus 208 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 237 (399)
-++..|++.+++|+++|+.+-.|..-++..
T Consensus 41 GDp~~M~rtV~lA~e~gV~IGAHPgyPDl~ 70 (252)
T COG1540 41 GDPLTMRRTVRLAKENGVAIGAHPGYPDLV 70 (252)
T ss_pred CCHHHHHHHHHHHHHcCCeeccCCCCcccc
Confidence 377899999999999999999999887753
No 214
>PRK03906 mannonate dehydratase; Provisional
Probab=54.35 E-value=45 Score=32.45 Aligned_cols=133 Identities=17% Similarity=0.182 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCce
Q 015826 210 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289 (399)
Q Consensus 210 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~ 289 (399)
.+.|++++..|+++|+.+.+|..++..... ++...-. ....+.+++.... .+..|.-
T Consensus 213 ~~fL~~v~p~Aee~GV~LaihPdDPp~~~~----------------Gl~riv~--t~~d~~rll~~v~-----Sp~~gl~ 269 (385)
T PRK03906 213 AYFLKAIIPVAEEVGVKMAIHPDDPPRPIF----------------GLPRIVS--TEEDLQRLLDAVD-----SPANGLT 269 (385)
T ss_pred HHHHHHHHHHHHHcCCEEEEeeCCcccccc----------------ccCceeC--CHHHHHHHHHhcC-----CCceeEE
Confidence 345788999999999999999987642110 0000000 0123444444332 2223445
Q ss_pred EEEEcCCCh--hHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCcc-EEe
Q 015826 290 LHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID-MLS 366 (399)
Q Consensus 290 vhi~H~s~~--~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id-~i~ 366 (399)
+...|++.. ..-.++|+.+.. . .+|.++.+-.....+ .|.=.+++-..-|-.++.++|.+-.-+ .+-
T Consensus 270 lDtG~l~~~~e~D~~~~I~~~g~---R------I~hvHlrdv~~~~~~-~F~E~~hl~G~vD~~~vl~aL~~~gy~G~ir 339 (385)
T PRK03906 270 LCTGSLGARPDNDLPAMIREFGD---R------IHFAHLRNVKREGPG-SFHEAAHLSGDVDMYAVVKALLDEEFRIPMR 339 (385)
T ss_pred EchhhhhhcCCCCHHHHHHHhhh---h------EEEEeeccCccCCCC-CcccccCCCCCCCHHHHHHHHHHcCCCccee
Confidence 555777432 034566666532 2 345555543321112 222234455677888888888754444 688
Q ss_pred CCCCCCCcc
Q 015826 367 SDHSPTVPE 375 (399)
Q Consensus 367 sdh~p~~~~ 375 (399)
-||.|.-..
T Consensus 340 pDHg~~~~~ 348 (385)
T PRK03906 340 PDHGRMIWD 348 (385)
T ss_pred CCCCCCccC
Confidence 999887543
No 215
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=53.93 E-value=1.8e+02 Score=26.85 Aligned_cols=111 Identities=11% Similarity=0.015 Sum_probs=56.7
Q ss_pred cCchHHHHHHHHcC-CeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeee-CCChhhHHHHHHHHHcCCcE
Q 015826 115 WEGFPSGTKAAAAG-GITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-PENAYNASALEALLNAGVLG 192 (399)
Q Consensus 115 ~e~~~~~~~~al~~-GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~G~~~ 192 (399)
.+.+....+..+.. |++.++-.+....-...+.+...+..+.......-.+....+.. ....+.++..+...+.|+++
T Consensus 20 ~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~ 99 (288)
T cd00954 20 EDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDA 99 (288)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCE
Confidence 34455667777888 99998776522221222333333333322211000122222222 22334556666667789998
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHHH-HHhc-CCCEEEe
Q 015826 193 LKSFMCPSGINDFPMTNASHIKEGLSV-LARY-KRPLLVH 230 (399)
Q Consensus 193 ik~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~-g~~v~~H 230 (399)
+-+.. + .+...+++++.+-++. +... ++++.+.
T Consensus 100 v~~~~-P----~y~~~~~~~i~~~~~~v~~a~~~lpi~iY 134 (288)
T cd00954 100 ISAIT-P----FYYKFSFEEIKDYYREIIAAAASLPMIIY 134 (288)
T ss_pred EEEeC-C----CCCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 86432 1 1112355666665554 5567 8898886
No 216
>PRK13753 dihydropteroate synthase; Provisional
Probab=53.91 E-value=1.4e+02 Score=27.76 Aligned_cols=66 Identities=17% Similarity=0.093 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHcCCcEEEEeecCCCCCCC-CCCCHHHHH---HHHHHHHhcCCCEEEecCChhhchhHHhh
Q 015826 177 YNASALEALLNAGVLGLKSFMCPSGINDF-PMTNASHIK---EGLSVLARYKRPLLVHAEMEKGSERHVKL 243 (399)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~~~~~~~~~~-~~~~~~~l~---~~~~~a~~~g~~v~~H~~~~~~~~~~~~~ 243 (399)
..++...++++.|++-|-+....+ .++. +....++++ .+++..++.+.++.+-..+++.++..++.
T Consensus 26 ~a~~~a~~m~~~GAdIIDIGgeST-rPga~~vs~eeE~~Rv~pvI~~l~~~~~~ISIDT~~~~va~~al~a 95 (279)
T PRK13753 26 GAVTAAIEMLRVGSDVVDVGPAAS-HPDARPVSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKR 95 (279)
T ss_pred HHHHHHHHHHHCCCcEEEECCCCC-CCCCCcCCHHHHHHHHHHHHHHHHhCCCcEEEECCCHHHHHHHHHc
Confidence 356677788889998776643221 1121 233455676 66777777788888888888877777654
No 217
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.73 E-value=81 Score=27.93 Aligned_cols=103 Identities=18% Similarity=0.136 Sum_probs=60.0
Q ss_pred cCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEE
Q 015826 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 194 (399)
Q Consensus 115 ~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik 194 (399)
.++.....+.++.+|++.+---. ++ ....+.++...+.......+.++. + +-...+++++.++.|+..+-
T Consensus 24 ~~~a~~~~~al~~~Gi~~iEit~-~~---~~a~~~i~~l~~~~~~~p~~~vGa--G----TV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 24 KEEALKISLAVIKGGIKAIEVTY-TN---PFASEVIKELVELYKDDPEVLIGA--G----TVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEC-CC---ccHHHHHHHHHHHcCCCCCeEEee--e----eCCCHHHHHHHHHcCCCEEE
Confidence 34556667888999999875322 21 123445555444332111122221 1 11135678888999997653
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHH
Q 015826 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 241 (399)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~ 241 (399)
+ |.++++ +++.++++|+++.-=+.++.++....
T Consensus 94 ---s-------P~~~~~----v~~~~~~~~i~~iPG~~T~~E~~~A~ 126 (213)
T PRK06552 94 ---S-------PSFNRE----TAKICNLYQIPYLPGCMTVTEIVTAL 126 (213)
T ss_pred ---C-------CCCCHH----HHHHHHHcCCCEECCcCCHHHHHHHH
Confidence 2 234554 45568899999998888877665443
No 218
>PRK08444 hypothetical protein; Provisional
Probab=53.33 E-value=60 Score=31.22 Aligned_cols=120 Identities=13% Similarity=-0.010 Sum_probs=67.8
Q ss_pred cCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc-CceeEEeeeee-----e-CCChhhHHHHHHHHH
Q 015826 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGL-----V-PENAYNASALEALLN 187 (399)
Q Consensus 115 ~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~-~~~~~~~~~l~~l~~ 187 (399)
.+.+...++.+...|+|.+.-.. +..|.. ..+.+.+.++..... ..+++..+... . .......+.+.++.+
T Consensus 82 ~eeI~~~a~~a~~~G~~ei~iv~-G~~p~~-~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lke 159 (353)
T PRK08444 82 HEEILEIVKNSVKRGIKEVHIVS-AHNPNY-GYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLE 159 (353)
T ss_pred HHHHHHHHHHHHHCCCCEEEEec-cCCCCC-CHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45566778888899999987765 444443 345555555555432 22333321000 0 011224567788888
Q ss_pred cCCcEEEEe----ecCCCCC-CCC-CCCHHHHHHHHHHHHhcCCCE-----EEecCChhh
Q 015826 188 AGVLGLKSF----MCPSGIN-DFP-MTNASHIKEGLSVLARYKRPL-----LVHAEMEKG 236 (399)
Q Consensus 188 ~G~~~ik~~----~~~~~~~-~~~-~~~~~~l~~~~~~a~~~g~~v-----~~H~~~~~~ 236 (399)
+|.+.+--. +.+.-.. -.| ..+.+....+.+.|++.|+++ .-|.|+.+.
T Consensus 160 AGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~ed 219 (353)
T PRK08444 160 YGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENREH 219 (353)
T ss_pred hCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCHHH
Confidence 887644110 0000000 001 346788999999999999875 468887765
No 219
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=53.06 E-value=62 Score=28.21 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCC
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLK 258 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (399)
...++-+.+.|..++|.|.-.. ....++++++.+.|.++|..+ -... -+ +
T Consensus 138 etAiaml~dmG~~SiKffPm~G------l~~leE~~avAkA~a~~g~~l--EPTG--GI-----------d--------- 187 (218)
T PF07071_consen 138 ETAIAMLKDMGGSSIKFFPMGG------LKHLEELKAVAKACARNGFTL--EPTG--GI-----------D--------- 187 (218)
T ss_dssp HHHHHHHHHTT--EEEE---TT------TTTHHHHHHHHHHHHHCT-EE--EEBS--S----------------------
T ss_pred HHHHHHHHHcCCCeeeEeecCC------cccHHHHHHHHHHHHHcCcee--CCcC--Cc-----------C---------
Confidence 3456666779999999873321 357899999999999999887 2211 00 1
Q ss_pred CCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC
Q 015826 259 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 297 (399)
Q Consensus 259 ~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~ 297 (399)
...+.++++.+.+. |++..|-|+-+
T Consensus 188 -------l~N~~~I~~i~l~a-------Gv~~viPHiYs 212 (218)
T PF07071_consen 188 -------LDNFEEIVKICLDA-------GVEKVIPHIYS 212 (218)
T ss_dssp -------TTTHHHHHHHHHHT-------T-S-B--EE-G
T ss_pred -------HHHHHHHHHHHHHc-------CCCeeccchhh
Confidence 11346667778775 88888888854
No 220
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=52.96 E-value=1.3e+02 Score=29.01 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015826 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (399)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 236 (399)
+..+.+.+.|++.|.+- . .....+++++.++++..++ .++++.+|++|...
T Consensus 146 ~~~~~~~~~Ga~~i~l~--D----T~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~G 197 (365)
T TIGR02660 146 ELAEVAAEAGADRFRFA--D----TVGILDPFSTYELVRALRQAVDLPLEMHAHNDLG 197 (365)
T ss_pred HHHHHHHHcCcCEEEEc--c----cCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 34455566898876442 1 1235788888888888765 48999999988653
No 221
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=52.80 E-value=1.8e+02 Score=26.49 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHcCCcEEEEeecCCCCCCC-CCCCHHHHHH---HHHHHHhc-CCCEEEecCChhhchhHHhhccCcCCch
Q 015826 177 YNASALEALLNAGVLGLKSFMCPSGINDF-PMTNASHIKE---GLSVLARY-KRPLLVHAEMEKGSERHVKLEDDTLDTR 251 (399)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~~~~~~~~~~-~~~~~~~l~~---~~~~a~~~-g~~v~~H~~~~~~~~~~~~~~~~~~~~~ 251 (399)
..++...++++.|+.-|-+....+. ++. +....+++++ +++..++. +.++.+-..+++.++.+++.+ .+..
T Consensus 25 ~~~~~a~~~~~~GAdiIDIG~~st~-p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~al~~G---~~iI 100 (257)
T cd00739 25 KAVAHAEKMIAEGADIIDIGGESTR-PGADPVSVEEELERVIPVLEALRGELDVLISVDTFRAEVARAALEAG---ADII 100 (257)
T ss_pred HHHHHHHHHHHCCCCEEEECCCcCC-CCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHHHHhC---CCEE
Confidence 3456677778889988776432211 111 1233455555 45666655 899999888888877777642 1111
Q ss_pred hhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC-h-----------------hHHHHHHHHHHHCCC
Q 015826 252 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD-A-----------------SSSLDLLMEAKTNGD 313 (399)
Q Consensus 252 ~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~-~-----------------~~~l~~i~~ak~~G~ 313 (399)
....+.... .+++.+++++ |+++.+.|... + ....+.++.+++.|+
T Consensus 101 Ndisg~~~~---------~~~~~l~~~~-------~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi 164 (257)
T cd00739 101 NDVSGGSDD---------PAMLEVAAEY-------GAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGV 164 (257)
T ss_pred EeCCCCCCC---------hHHHHHHHHc-------CCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCC
Confidence 111111101 2345556654 88888888631 0 013355666778887
Q ss_pred ---CEEEEc
Q 015826 314 ---SITVET 319 (399)
Q Consensus 314 ---~vt~e~ 319 (399)
++..|.
T Consensus 165 ~~~~Ii~DP 173 (257)
T cd00739 165 ARNRIILDP 173 (257)
T ss_pred CHHHEEEec
Confidence 466664
No 222
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.73 E-value=77 Score=27.78 Aligned_cols=96 Identities=23% Similarity=0.224 Sum_probs=56.6
Q ss_pred CchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEE
Q 015826 116 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 195 (399)
Q Consensus 116 e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~ 195 (399)
++.....+.++.+|++.+---. ++ | ...+.++...+.. .. +.++. + +-...+++++.++.|+..+-
T Consensus 16 ~~a~~ia~al~~gGi~~iEit~-~t-p--~a~~~I~~l~~~~-~~--~~vGA--G----TVl~~e~a~~ai~aGA~Fiv- 81 (201)
T PRK06015 16 EHAVPLARALAAGGLPAIEITL-RT-P--AALDAIRAVAAEV-EE--AIVGA--G----TILNAKQFEDAAKAGSRFIV- 81 (201)
T ss_pred HHHHHHHHHHHHCCCCEEEEeC-CC-c--cHHHHHHHHHHHC-CC--CEEee--E----eCcCHHHHHHHHHcCCCEEE-
Confidence 4455667888999999874322 22 2 2344454443332 12 22221 1 11135678888999997652
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhch
Q 015826 196 FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 238 (399)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 238 (399)
+ |.++++ +++.|+++|+++.-=+-++.++.
T Consensus 82 --S-------P~~~~~----vi~~a~~~~i~~iPG~~TptEi~ 111 (201)
T PRK06015 82 --S-------PGTTQE----LLAAANDSDVPLLPGAATPSEVM 111 (201)
T ss_pred --C-------CCCCHH----HHHHHHHcCCCEeCCCCCHHHHH
Confidence 2 235554 45678899999998887776644
No 223
>PRK12999 pyruvate carboxylase; Reviewed
Probab=52.46 E-value=2.1e+02 Score=32.34 Aligned_cols=104 Identities=18% Similarity=0.208 Sum_probs=61.1
Q ss_pred HHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC-cee--EEeeeeeeCC-----Chh-hHHHHHHHHHcCCcE
Q 015826 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVD--VGFWGGLVPE-----NAY-NASALEALLNAGVLG 192 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~-----~~~-~~~~l~~l~~~G~~~ 192 (399)
.+.+.++|+..++-+- . ....+.++..++.+...+ .+. ++..+.+.+. +.+ ..+..+++.+.|+..
T Consensus 633 i~~a~~~Gid~~rifd-~----lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~ 707 (1146)
T PRK12999 633 VREAAAAGIDVFRIFD-S----LNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHI 707 (1146)
T ss_pred HHHHHHcCCCEEEEec-c----CChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 6788899999987653 1 122455555555554332 222 2222111111 112 234456667789987
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015826 193 LKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (399)
Q Consensus 193 ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 236 (399)
|.+- +-....++.....++...++ .++++.+|++|...
T Consensus 708 i~ik------Dt~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~G 746 (1146)
T PRK12999 708 LAIK------DMAGLLKPAAAYELVSALKEEVDLPIHLHTHDTSG 746 (1146)
T ss_pred EEEC------CccCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCc
Confidence 6542 11235788888888888775 58999999988664
No 224
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=52.19 E-value=1.9e+02 Score=26.48 Aligned_cols=122 Identities=13% Similarity=0.081 Sum_probs=66.1
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhhchhHHhhccCcCCchhhhcC
Q 015826 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 256 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (399)
..+...+++++|+.-+-+....+ +....+.+..+++..++ .++|+.+-+.+++..+..++... ..+......+
T Consensus 27 i~~~A~~~~~~GAdiIDVg~~~~-----~~eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~-G~~iINsIs~ 100 (261)
T PRK07535 27 IQKLALKQAEAGADYLDVNAGTA-----VEEEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAK-GPPLINSVSA 100 (261)
T ss_pred HHHHHHHHHHCCCCEEEECCCCC-----chhHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCC-CCCEEEeCCC
Confidence 34566677788888776643211 11234456677777665 48888888888887776665421 0011111111
Q ss_pred CCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC------h----hHHHHHHHHHHHCCC---CEEEEcc
Q 015826 257 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD------A----SSSLDLLMEAKTNGD---SITVETC 320 (399)
Q Consensus 257 ~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~------~----~~~l~~i~~ak~~G~---~vt~e~~ 320 (399)
. ......++.+++++ |+++.+.|... . ....+.++.+.+.|+ ++..|..
T Consensus 101 ~--------~~~~~~~~~l~~~~-------g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPg 162 (261)
T PRK07535 101 E--------GEKLEVVLPLVKKY-------NAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPL 162 (261)
T ss_pred C--------CccCHHHHHHHHHh-------CCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCC
Confidence 0 00123445566654 78887777631 1 122345556777787 4666643
No 225
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=51.12 E-value=2.1e+02 Score=26.61 Aligned_cols=66 Identities=9% Similarity=0.034 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHcCCcEEEEeecCCCCCCC-CCCCHHHHHH---HHHHHHh-cCCCEEEecCChhhchhHHhh
Q 015826 177 YNASALEALLNAGVLGLKSFMCPSGINDF-PMTNASHIKE---GLSVLAR-YKRPLLVHAEMEKGSERHVKL 243 (399)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~~~~~~~~~~-~~~~~~~l~~---~~~~a~~-~g~~v~~H~~~~~~~~~~~~~ 243 (399)
...+...++++.|++-|-+....+ .++. +....+++++ +++..++ .++++.+-..+++.++..+..
T Consensus 39 ~a~~~a~~~~~~GAdIIDIGgeST-rPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~~~va~~AL~~ 109 (282)
T PRK11613 39 DAVKHANLMINAGATIIDVGGEST-RPGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTSKPEVIRESAKA 109 (282)
T ss_pred HHHHHHHHHHHCCCcEEEECCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHc
Confidence 345677788889998776642221 1122 2334566555 4455553 589999998888888777764
No 226
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=50.60 E-value=1.5e+02 Score=26.88 Aligned_cols=51 Identities=20% Similarity=0.113 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChh
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEK 235 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~ 235 (399)
.+.++++.+.|+..|.+ .. ......++++.++++..++ +++++.+|++|..
T Consensus 142 ~~~~~~~~~~G~~~i~l--~D----T~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~ 193 (259)
T cd07939 142 IEFAEVAQEAGADRLRF--AD----TVGILDPFTTYELIRRLRAATDLPLEFHAHNDL 193 (259)
T ss_pred HHHHHHHHHCCCCEEEe--CC----CCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 34455566789887644 22 2235788899999888775 5789999998754
No 227
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=49.81 E-value=1.3e+02 Score=26.21 Aligned_cols=96 Identities=20% Similarity=0.149 Sum_probs=54.3
Q ss_pred cCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEE
Q 015826 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 194 (399)
Q Consensus 115 ~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik 194 (399)
.++.....++++.+|++.+---. ++ ....+.++...+.. ... -++. + +-...++.++.++.|+..+-
T Consensus 19 ~~~a~~~~~al~~gGi~~iEiT~-~t---~~a~~~I~~l~~~~-p~~--~vGA--G----TV~~~e~a~~a~~aGA~Fiv 85 (196)
T PF01081_consen 19 PEDAVPIAEALIEGGIRAIEITL-RT---PNALEAIEALRKEF-PDL--LVGA--G----TVLTAEQAEAAIAAGAQFIV 85 (196)
T ss_dssp GGGHHHHHHHHHHTT--EEEEET-TS---TTHHHHHHHHHHHH-TTS--EEEE--E----S--SHHHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEec-CC---ccHHHHHHHHHHHC-CCC--eeEE--E----eccCHHHHHHHHHcCCCEEE
Confidence 45667778889999999764322 22 23455555444443 222 2221 1 11235678888899997663
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhc
Q 015826 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS 237 (399)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 237 (399)
. |.+++ +++++|+++|+++.-=+-++.++
T Consensus 86 S----------P~~~~----~v~~~~~~~~i~~iPG~~TptEi 114 (196)
T PF01081_consen 86 S----------PGFDP----EVIEYAREYGIPYIPGVMTPTEI 114 (196)
T ss_dssp E----------SS--H----HHHHHHHHHTSEEEEEESSHHHH
T ss_pred C----------CCCCH----HHHHHHHHcCCcccCCcCCHHHH
Confidence 2 23454 45567889999999888776653
No 228
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=49.47 E-value=2e+02 Score=26.04 Aligned_cols=120 Identities=15% Similarity=0.130 Sum_probs=66.0
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCC
Q 015826 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 257 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (399)
..+.++.+.+.|..++.++...+. ...+..+...++++.+.++++|+.+..+....... +.. ..
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~-~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~------------~~~---~~ 78 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPH-AFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGY------------PYN---MM 78 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCcc-ccccccCchHHHHHHHHHHHcCCeEEEecCcccCc------------Ccc---cc
Confidence 356677777889998887532211 01122445678888889999999987764211100 000 00
Q ss_pred CCCChH--HHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC------h----hH---H-HHHHHHHHHCCCCEEEEcc
Q 015826 258 KTRPPS--WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD------A----SS---S-LDLLMEAKTNGDSITVETC 320 (399)
Q Consensus 258 ~~~p~~--~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~------~----~~---~-l~~i~~ak~~G~~vt~e~~ 320 (399)
...+.. .....+++.+++|+.. |++..+.|... . +. . -++.+.+++.|+.+..|..
T Consensus 79 ~~~~~~r~~~~~~~~~~i~~a~~l-------Ga~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 79 LGDEHMRRESLDMIKLAMDMAKEM-------NAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPL 150 (275)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh-------CCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 011111 1124566777888765 66665555431 0 01 1 2334456778998888863
No 229
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=49.35 E-value=1.9e+02 Score=25.70 Aligned_cols=97 Identities=22% Similarity=0.122 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCcEEEE-eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec--CChhhchhHHhhccCcCCchhhhc
Q 015826 179 ASALEALLNAGVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA--EMEKGSERHVKLEDDTLDTRSYST 255 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~--~~~~~~~~~~~~~~~~~~~~~~~~ 255 (399)
.++++++.++|++.+.+ .|..+-+++ -++.++.++++.+ ....++.+|. ++++.
T Consensus 19 ~~el~~~~~agad~iH~DVMDghFVPN-iTfGp~~v~~l~~---~t~~p~DvHLMV~~p~~------------------- 75 (220)
T COG0036 19 GEELKALEAAGADLIHIDVMDGHFVPN-ITFGPPVVKALRK---ITDLPLDVHLMVENPDR------------------- 75 (220)
T ss_pred HHHHHHHHHcCCCEEEEeccCCCcCCC-cccCHHHHHHHhh---cCCCceEEEEecCCHHH-------------------
Confidence 46788888899998865 344332222 2456666665544 3468999995 44331
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC-ChhHHHHHHHHHHHCCCCEEEEcccc
Q 015826 256 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS-DASSSLDLLMEAKTNGDSITVETCPH 322 (399)
Q Consensus 256 ~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s-~~~~~l~~i~~ak~~G~~vt~e~~p~ 322 (399)
-+. .+++. |+.....|.- +. .-.++|+..|+.|+..-+-.+|.
T Consensus 76 ------------~i~---~fa~a--------gad~It~H~E~~~-~~~r~i~~Ik~~G~kaGv~lnP~ 119 (220)
T COG0036 76 ------------YIE---AFAKA--------GADIITFHAEATE-HIHRTIQLIKELGVKAGLVLNPA 119 (220)
T ss_pred ------------HHH---HHHHh--------CCCEEEEEeccCc-CHHHHHHHHHHcCCeEEEEECCC
Confidence 111 12221 3333444443 33 56778888888888888888885
No 230
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=49.07 E-value=1.9e+02 Score=25.61 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=33.2
Q ss_pred HHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 181 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 181 ~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
+.+...++|++.+.+.- ..+.++++.+++.|+++|+.+.+-.-
T Consensus 72 e~~ma~~aGAd~~tV~g---------~A~~~TI~~~i~~A~~~~~~v~iDl~ 114 (217)
T COG0269 72 EARMAFEAGADWVTVLG---------AADDATIKKAIKVAKEYGKEVQIDLI 114 (217)
T ss_pred HHHHHHHcCCCEEEEEe---------cCCHHHHHHHHHHHHHcCCeEEEEee
Confidence 45555678998776531 35778999999999999999888753
No 231
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=48.57 E-value=1.4e+02 Score=27.75 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=32.4
Q ss_pred HHHHHHHHHc-CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecCC
Q 015826 179 ASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEM 233 (399)
Q Consensus 179 ~~~l~~l~~~-G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~ 233 (399)
.+.++.+++. |+.++-+.- .. ..++.++.++-+++++.+.+. .+++.+++..
T Consensus 24 ~~~i~~l~~~~Gv~gi~~~G-st--GE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~ 79 (288)
T cd00954 24 RAIVDYLIEKQGVDGLYVNG-ST--GEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS 79 (288)
T ss_pred HHHHHHHHhcCCCCEEEECc-CC--cCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC
Confidence 4556666778 888874421 11 234567888877777766652 3577777643
No 232
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.78 E-value=1.3e+02 Score=26.76 Aligned_cols=100 Identities=19% Similarity=0.098 Sum_probs=57.5
Q ss_pred CchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc-CceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEE
Q 015826 116 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 194 (399)
Q Consensus 116 e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik 194 (399)
++....++.++.+|++.+---. ++ | ...+.++...+..... ..+.++. + +-...++.++.++.|+..+-
T Consensus 27 ~~a~~~~~al~~gGi~~iEiT~-~t-p--~a~~~i~~l~~~~~~~~p~~~vGa--G----TVl~~e~a~~a~~aGA~FiV 96 (222)
T PRK07114 27 EVAKKVIKACYDGGARVFEFTN-RG-D--FAHEVFAELVKYAAKELPGMILGV--G----SIVDAATAALYIQLGANFIV 96 (222)
T ss_pred HHHHHHHHHHHHCCCCEEEEeC-CC-C--cHHHHHHHHHHHHHhhCCCeEEee--E----eCcCHHHHHHHHHcCCCEEE
Confidence 4455667888999999774322 22 2 2345555443333221 2122221 1 11134678888899997653
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchh
Q 015826 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 239 (399)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~ 239 (399)
+ |.++++ +++.++++|+++.-=+-++.++..
T Consensus 97 ---s-------P~~~~~----v~~~~~~~~i~~iPG~~TpsEi~~ 127 (222)
T PRK07114 97 ---T-------PLFNPD----IAKVCNRRKVPYSPGCGSLSEIGY 127 (222)
T ss_pred ---C-------CCCCHH----HHHHHHHcCCCEeCCCCCHHHHHH
Confidence 2 235554 456788899999888877766543
No 233
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=47.63 E-value=2.2e+02 Score=26.10 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=34.4
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChh
Q 015826 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEK 235 (399)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~ 235 (399)
+.++++.+.|+..+.+. . .....+++.+..+++..++ +++++.+|++|..
T Consensus 145 ~~~~~~~~~g~~~i~l~--D----t~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~ 195 (262)
T cd07948 145 RVYRAVDKLGVNRVGIA--D----TVGIATPRQVYELVRTLRGVVSCDIEFHGHNDT 195 (262)
T ss_pred HHHHHHHHcCCCEEEEC--C----cCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 34455566798876442 1 1235788888888888776 5789999998754
No 234
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=47.42 E-value=1.4e+02 Score=27.94 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh
Q 015826 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR 222 (399)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 222 (399)
+.++.+++.|+.++-.. .+. ..++.++.+|-+++++.+.+
T Consensus 29 ~lv~~li~~Gv~gi~~~--Gtt-GE~~~Ls~eEr~~v~~~~v~ 68 (299)
T COG0329 29 RLVEFLIAAGVDGLVVL--GTT-GESPTLTLEERKEVLEAVVE 68 (299)
T ss_pred HHHHHHHHcCCCEEEEC--CCC-ccchhcCHHHHHHHHHHHHH
Confidence 34455566777766432 111 23456666666666665554
No 235
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=47.39 E-value=1.2e+02 Score=28.18 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=30.6
Q ss_pred HHHHHHHHH-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecC
Q 015826 179 ASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAE 232 (399)
Q Consensus 179 ~~~l~~l~~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~ 232 (399)
.+.++.+++ .|+.++-+.-+ . ..+..++.++-.++++.+.+. .++|.+++.
T Consensus 27 ~~li~~l~~~~Gv~gi~v~Gs-t--GE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg 81 (293)
T PRK04147 27 RRLVRFNIEKQGIDGLYVGGS-T--GEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG 81 (293)
T ss_pred HHHHHHHHhcCCCCEEEECCC-c--cccccCCHHHHHHHHHHHHHHhCCCCCEEecCC
Confidence 455666677 88888754211 1 234567777777777665542 356777763
No 236
>PRK08005 epimerase; Validated
Probab=46.92 E-value=2e+02 Score=25.33 Aligned_cols=97 Identities=20% Similarity=0.173 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCcEEEE-eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec--CChhhchhHHhhccCcCCchhhhc
Q 015826 179 ASALEALLNAGVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA--EMEKGSERHVKLEDDTLDTRSYST 255 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~--~~~~~~~~~~~~~~~~~~~~~~~~ 255 (399)
.++++++.+.|++.+.+ .|..+-+++ ..+.++.++++.+. .+.++.+|. ++++.
T Consensus 16 ~~el~~l~~~g~d~lHiDvMDG~FVPN-~tfG~~~i~~l~~~---t~~~~DvHLMv~~P~~------------------- 72 (210)
T PRK08005 16 AEALTALHDAPLGSLHLDIEDTSFINN-ITFGMKTIQAVAQQ---TRHPLSFHLMVSSPQR------------------- 72 (210)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCcCCc-cccCHHHHHHHHhc---CCCCeEEEeccCCHHH-------------------
Confidence 46788888889988754 243321111 24577777776543 578999995 33321
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC-ChhHHHHHHHHHHHCCCCEEEEcccc
Q 015826 256 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS-DASSSLDLLMEAKTNGDSITVETCPH 322 (399)
Q Consensus 256 ~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s-~~~~~l~~i~~ak~~G~~vt~e~~p~ 322 (399)
-+...... |+.....|.- +. ...++++..|+.|..+-.-++|.
T Consensus 73 ------------~i~~~~~~-----------gad~It~H~Ea~~-~~~~~l~~Ik~~G~k~GlAlnP~ 116 (210)
T PRK08005 73 ------------WLPWLAAI-----------RPGWIFIHAESVQ-NPSEILADIRAIGAKAGLALNPA 116 (210)
T ss_pred ------------HHHHHHHh-----------CCCEEEEcccCcc-CHHHHHHHHHHcCCcEEEEECCC
Confidence 12222222 4445666664 22 44577788888888877777774
No 237
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=46.83 E-value=1.3e+02 Score=25.75 Aligned_cols=120 Identities=17% Similarity=0.097 Sum_probs=66.4
Q ss_pred HHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCCh
Q 015826 183 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPP 262 (399)
Q Consensus 183 ~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 262 (399)
+.+.+.|..++.+....... .....+.++++.+.++++|+.+..+.-...... ... ......++
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~---~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~-----------~~~--~~~~~~~~ 65 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQP---WDEKDDEAEELRRLLEDYGLKIASLHPPTNFWS-----------PDE--ENGSANDE 65 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSH---HTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSC-----------TGT--TSTTSSSH
T ss_pred hHHHHcCCCEEEEecCCCcc---cccchHHHHHHHHHHHHcCCeEEEEeccccccc-----------ccc--cccCcchh
Confidence 45567888888876433210 000046788999999999999665431111000 000 00001111
Q ss_pred -HHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC---C------h---h---HH-HHHHHHHHHCCCCEEEEccccccc
Q 015826 263 -SWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS---D------A---S---SS-LDLLMEAKTNGDSITVETCPHYLA 325 (399)
Q Consensus 263 -~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s---~------~---~---~~-l~~i~~ak~~G~~vt~e~~p~~L~ 325 (399)
......+.+.+.+|+.. |++....|.. . . + +. -++.+.+++.|+.+..|..+....
T Consensus 66 r~~~~~~~~~~i~~a~~l-------g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 138 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRL-------GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFS 138 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH-------TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSS
T ss_pred hHHHHHHHHHHHHHHHHh-------CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccc
Confidence 11134667788888876 7888888855 1 0 0 11 233344667899999998886654
No 238
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=46.70 E-value=1.1e+02 Score=26.96 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=56.5
Q ss_pred CchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEE
Q 015826 116 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 195 (399)
Q Consensus 116 e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~ 195 (399)
++.....+.++.+|++.+---. ++ | ...+.++...+... . +.++. + +-...++.++.++.|+..+-
T Consensus 20 e~a~~~~~al~~~Gi~~iEit~-~t-~--~a~~~i~~l~~~~~-~--~~vGA--G----TVl~~~~a~~a~~aGA~Fiv- 85 (204)
T TIGR01182 20 DDALPLAKALIEGGLRVLEVTL-RT-P--VALDAIRLLRKEVP-D--ALIGA--G----TVLNPEQLRQAVDAGAQFIV- 85 (204)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC-CC-c--cHHHHHHHHHHHCC-C--CEEEE--E----eCCCHHHHHHHHHcCCCEEE-
Confidence 4455667888999999764222 22 1 23444444443321 1 22221 1 11135678888999998662
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhch
Q 015826 196 FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 238 (399)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 238 (399)
+| .+++ .+++.|+++|+++.-=+-++.++.
T Consensus 86 --sP-------~~~~----~v~~~~~~~~i~~iPG~~TptEi~ 115 (204)
T TIGR01182 86 --SP-------GLTP----ELAKHAQDHGIPIIPGVATPSEIM 115 (204)
T ss_pred --CC-------CCCH----HHHHHHHHcCCcEECCCCCHHHHH
Confidence 22 3454 456678899999988877776544
No 239
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=46.62 E-value=2.5e+02 Score=26.25 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=56.5
Q ss_pred CCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHH----HHHhccCceeEEeeeeeeCCChhhHHHHHHHH
Q 015826 111 GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV----DAAEKRIYVDVGFWGGLVPENAYNASALEALL 186 (399)
Q Consensus 111 ~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 186 (399)
+.-+.+.+....+..+..||-.++-.+........+.+.-.+.+ +...++..+-.+. -.....+..+..+...
T Consensus 20 g~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~---g~~~t~eai~lak~a~ 96 (299)
T COG0329 20 GSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGV---GSNSTAEAIELAKHAE 96 (299)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEec---CCCcHHHHHHHHHHHH
Confidence 33344556666777889999888776522222222333333333 3333332222111 1222344556666666
Q ss_pred HcCCcEEEEeecCCCCCCCCCCCHH-HHHHHHHHHHhcCCCEEEe
Q 015826 187 NAGVLGLKSFMCPSGINDFPMTNAS-HIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 187 ~~G~~~ik~~~~~~~~~~~~~~~~~-~l~~~~~~a~~~g~~v~~H 230 (399)
+.|++++-+..-+ +...+.+ .++.....+.+.++|+.+-
T Consensus 97 ~~Gad~il~v~Py-----Y~k~~~~gl~~hf~~ia~a~~lPvilY 136 (299)
T COG0329 97 KLGADGILVVPPY-----YNKPSQEGLYAHFKAIAEAVDLPVILY 136 (299)
T ss_pred hcCCCEEEEeCCC-----CcCCChHHHHHHHHHHHHhcCCCEEEE
Confidence 7899988654211 1123334 4444445555568887765
No 240
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=45.75 E-value=1.9e+02 Score=26.36 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-C---CCEEEecCChh
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-K---RPLLVHAEMEK 235 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g---~~v~~H~~~~~ 235 (399)
.+..+++.+.|+..|.+. +.....+++.+..+++..++. + +++.+|++|..
T Consensus 146 ~~~~~~~~~~G~~~i~l~------DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~ 200 (268)
T cd07940 146 IEVVEAAIEAGATTINIP------DTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDL 200 (268)
T ss_pred HHHHHHHHHcCCCEEEEC------CCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCc
Confidence 344556667898876542 122357888999999888874 4 78999998754
No 241
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=45.43 E-value=57 Score=29.74 Aligned_cols=107 Identities=8% Similarity=0.026 Sum_probs=57.9
Q ss_pred CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCC--C-h-hhHHHHHHHHHcC
Q 015826 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE--N-A-YNASALEALLNAG 189 (399)
Q Consensus 114 ~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-~~~~~l~~l~~~G 189 (399)
..+++....+.+...|+..++..+.. ... ..+.......+-+....++... . . .....++++++.|
T Consensus 34 ~~~~~~~~~~~a~~~~~~~v~~~p~~-------~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~G 103 (258)
T TIGR01949 34 GLVDIRKTVNEVAEGGADAVLLHKGI-------VRR---GHRGYGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMG 103 (258)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeCcch-------hhh---cccccCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCC
Confidence 45678888999999999999866521 111 1111111111111110011111 1 1 1335688899999
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
++.+.+...... .. .....+++.++.+.++++|+++.+..+
T Consensus 104 a~~v~~~~~~g~-~~-~~~~~~~~~~i~~~~~~~g~~liv~~~ 144 (258)
T TIGR01949 104 ADAVSIHVNVGS-DT-EWEQIRDLGMIAEICDDWGVPLLAMMY 144 (258)
T ss_pred CCEEEEEEecCC-ch-HHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 988776543210 00 011224678888889999999988543
No 242
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=45.41 E-value=93 Score=28.52 Aligned_cols=106 Identities=11% Similarity=0.097 Sum_probs=58.9
Q ss_pred CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC--ceeEEeeeeeeC--CChhhHHHHHHHHHcC
Q 015826 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLVP--ENAYNASALEALLNAG 189 (399)
Q Consensus 114 ~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~l~~l~~~G 189 (399)
..+++....+.++..|+.+++..+. .+....+...... .+.+.....+.+ .......+++++++.|
T Consensus 37 ~~~d~~~~~~~a~~~~~~av~v~~~----------~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~G 106 (267)
T PRK07226 37 GLVDIRDTVNKVAEGGADAVLMHKG----------LARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLG 106 (267)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeCHh----------HHhhhccccCCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcC
Confidence 4567888899999999999875541 1111111111111 111110011111 1122345688889999
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015826 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (399)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 231 (399)
++.+.+....... . ...-.+++.++.+.++++|+++.++.
T Consensus 107 ad~v~~~~~~g~~-~-~~~~~~~~~~v~~~~~~~g~pl~vi~ 146 (267)
T PRK07226 107 ADAVSVHVNVGSE-T-EAEMLEDLGEVAEECEEWGMPLLAMM 146 (267)
T ss_pred CCEEEEEEecCCh-h-HHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 9888765433210 0 01134577888899999999998874
No 243
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=45.25 E-value=31 Score=32.92 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015826 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (399)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 231 (399)
..+++.++.|++++++...... . .-...-+++.++.++|+++|+|+.+.+
T Consensus 150 ~sVedAlrLGAdAV~~tvy~Gs-~-~E~~ml~~l~~i~~ea~~~GlPlv~~~ 199 (348)
T PRK09250 150 ASVEDALRLGAVAVGATIYFGS-E-ESRRQIEEISEAFEEAHELGLATVLWS 199 (348)
T ss_pred ecHHHHHHCCCCEEEEEEecCC-H-HHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 4578889999998877554421 1 111234567788899999999999864
No 244
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=44.84 E-value=29 Score=33.77 Aligned_cols=35 Identities=9% Similarity=0.011 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEec-CChhhchhHH
Q 015826 207 MTNASHIKEGLSVLARYKRPLLVHA-EMEKGSERHV 241 (399)
Q Consensus 207 ~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~~~~~ 241 (399)
.++.++++++++.|+++|+++.+|+ +..+.+....
T Consensus 210 ~~~~e~i~~~v~~A~~~g~~v~sH~~~~~~~i~~a~ 245 (383)
T PRK15446 210 RYAPPNRRAIAALARARGIPLASHDDDTPEHVAEAH 245 (383)
T ss_pred hcCHHHHHHHHHHHHHCCCceeecCCCCHHHHHHHH
Confidence 4688999999999999999999999 5665544433
No 245
>PRK09234 fbiC FO synthase; Reviewed
Probab=44.78 E-value=1.6e+02 Score=32.04 Aligned_cols=53 Identities=17% Similarity=0.032 Sum_probs=36.1
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015826 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 235 (399)
..+..++..+.|+..|.+.. |. .|..+.+.+.++++..++..-.+++|+.++.
T Consensus 562 I~~~a~ea~~~G~tev~i~g---G~--~p~~~~~~y~~lir~IK~~~p~i~i~afsp~ 614 (843)
T PRK09234 562 VADRAWEAWVAGATEVCMQG---GI--HPELPGTGYADLVRAVKARVPSMHVHAFSPM 614 (843)
T ss_pred HHHHHHHHHHCCCCEEEEec---CC--CCCcCHHHHHHHHHHHHHhCCCeeEEecChH
Confidence 34556666778988876542 22 2345677888888888887667888877653
No 246
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=44.12 E-value=1.8e+02 Score=25.77 Aligned_cols=51 Identities=22% Similarity=0.139 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cC-CCEEEecCChh
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YK-RPLLVHAEMEK 235 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g-~~v~~H~~~~~ 235 (399)
.+..+.+.+.|++.|.+.= .....+++.+..+++..++ ++ +++.+|++|..
T Consensus 140 ~~~~~~~~~~g~~~i~l~D------t~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~ 192 (237)
T PF00682_consen 140 LELAEALAEAGADIIYLAD------TVGIMTPEDVAELVRALREALPDIPLGFHAHNDL 192 (237)
T ss_dssp HHHHHHHHHHT-SEEEEEE------TTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTT
T ss_pred HHHHHHHHHcCCeEEEeeC------ccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCc
Confidence 3445555667988775421 1235788889888888886 45 88999998754
No 247
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=44.01 E-value=1.8e+02 Score=26.76 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=5.2
Q ss_pred HHHHHHHHhcC
Q 015826 350 KEKLWEALMDG 360 (399)
Q Consensus 350 ~~~l~~~l~~G 360 (399)
-..+|+++.+|
T Consensus 213 ~~~~~~~~~~g 223 (284)
T cd00950 213 MAEMVRAALAG 223 (284)
T ss_pred HHHHHHHHHCC
Confidence 33455555444
No 248
>PTZ00300 pyruvate kinase; Provisional
Probab=43.49 E-value=3.5e+02 Score=27.06 Aligned_cols=100 Identities=13% Similarity=0.104 Sum_probs=53.8
Q ss_pred HHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCC
Q 015826 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 201 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~ 201 (399)
...++..|+..+. .+ -..+.+.++...+...... -+..... --++.+.++.+++.+ .+++++-+.-..=+
T Consensus 153 I~~ald~gvd~I~-~S-----fVrsaeDv~~vr~~l~~~~-~~~~Iia--KIEt~eav~nldeI~-~~~DgImVaRGDLg 222 (454)
T PTZ00300 153 LQFGVEQGVDMIF-AS-----FIRSAEQVGEVRKALGAKG-GDIMIIC--KIENHQGVQNIDSII-EESDGIMVARGDLG 222 (454)
T ss_pred HHHHHHCCCCEEE-EC-----CCCCHHHHHHHHHHHHhcC-CCceEEE--EECCHHHHHhHHHHH-HhCCEEEEecchhh
Confidence 4567888988876 22 2345666666555543211 1111111 113445667777777 57777644211100
Q ss_pred CCCCCCC-CHHHHHHHHHHHHhcCCCEEEecC
Q 015826 202 INDFPMT-NASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 202 ~~~~~~~-~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
. ..+.. =+...+++++.|+++|+|+.+=.+
T Consensus 223 v-ei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQ 253 (454)
T PTZ00300 223 V-EIPAEKVVVAQKILISKCNVAGKPVICATQ 253 (454)
T ss_pred h-hcChHHHHHHHHHHHHHHHHcCCCEEEECc
Confidence 0 01111 134667888999999999987443
No 249
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=43.15 E-value=1.2e+02 Score=29.25 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceE
Q 015826 211 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 290 (399)
Q Consensus 211 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~v 290 (399)
+.|+.++..+++.|+++.+-+-..+ +. .....+.+++++. |..+
T Consensus 58 ~~L~~~L~~~~~~gIkvI~NaGg~n--------------p~---------------~~a~~v~eia~e~-------Gl~l 101 (362)
T PF07287_consen 58 RDLRPLLPAAAEKGIKVITNAGGLN--------------PA---------------GCADIVREIAREL-------GLSL 101 (362)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCC--------------HH---------------HHHHHHHHHHHhc-------CCCe
Confidence 4899999999999999988653211 11 1345556677764 6667
Q ss_pred EEEcCCChhHHHHHHHHHHHCCCC
Q 015826 291 HIVHLSDASSSLDLLMEAKTNGDS 314 (399)
Q Consensus 291 hi~H~s~~~~~l~~i~~ak~~G~~ 314 (399)
-|..++.. ...+.+++..++|..
T Consensus 102 kvA~V~gD-d~~~~v~~~~~~g~~ 124 (362)
T PF07287_consen 102 KVAVVYGD-DLKDEVKELLAEGET 124 (362)
T ss_pred eEEEEECc-cchHhHHHHHhCCCC
Confidence 77777765 667788777776653
No 250
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=42.88 E-value=2.5e+02 Score=25.28 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=58.1
Q ss_pred CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHH
Q 015826 189 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268 (399)
Q Consensus 189 G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~ 268 (399)
-++.+|+.... ....+.+.+++.++.|+++|+++..= ...- +..+. ...
T Consensus 24 yID~lKfg~Gt-----~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~--E~~~~-----------------------q~~ 72 (237)
T TIGR03849 24 YITFVKFGWGT-----SALIDRDIVKEKIEMYKDYGIKVYPG-GTLF--EIAHS-----------------------KGK 72 (237)
T ss_pred heeeEEecCce-----EeeccHHHHHHHHHHHHHcCCeEeCC-ccHH--HHHHH-----------------------hhh
Confidence 35667764322 22456678999999999999988653 1111 10000 124
Q ss_pred HHHHHHHHhhhccCCCCCCceEEEEcCCC---hhHHHHHHHHHHHCCCCEEEEcccc
Q 015826 269 IRELLTVAKDTRTDGPAEGAHLHIVHLSD---ASSSLDLLMEAKTNGDSITVETCPH 322 (399)
Q Consensus 269 v~~~~~~a~~~~~~~~~~g~~vhi~H~s~---~~~~l~~i~~ak~~G~~vt~e~~p~ 322 (399)
+.+.++.+++.++. .+.|+-.+. .++-+++|+.+++.|..+..|+...
T Consensus 73 ~~~Yl~~~k~lGf~------~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K 123 (237)
T TIGR03849 73 FDEYLNECDELGFE------AVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKK 123 (237)
T ss_pred HHHHHHHHHHcCCC------EEEEcCCccCCCHHHHHHHHHHHHhCCCeEecccccc
Confidence 56666777765321 133433321 1256789999999999999888774
No 251
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=42.84 E-value=1e+02 Score=24.81 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=40.4
Q ss_pred CcEEeCCCCEEecceeecccccCCCCCC-----------CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHH
Q 015826 86 GQVVDYGEAVIMPGLIDVHAHLDDPGRT-----------EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 154 (399)
Q Consensus 86 ~~vID~~G~~vlPGlID~H~H~~~~~~~-----------~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~ 154 (399)
+-++|+ ...+.|-+||.|.|...-.+. -..++.......-..|||.+...- ..+++...+.+
T Consensus 7 ~~~fdl-dytiwP~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASR------t~ap~iA~q~L 79 (144)
T KOG4549|consen 7 AMQFDL-DYTIWPRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASR------TMAPQIASQGL 79 (144)
T ss_pred eeEEec-cceeeeEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecC------CCCHHHHHHHH
Confidence 345665 568999999999998543211 112444555566688999886432 12455556666
Q ss_pred HHHh
Q 015826 155 DAAE 158 (399)
Q Consensus 155 ~~~~ 158 (399)
+...
T Consensus 80 ~~fk 83 (144)
T KOG4549|consen 80 ETFK 83 (144)
T ss_pred HHhc
Confidence 5543
No 252
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=42.80 E-value=1.9e+02 Score=29.15 Aligned_cols=109 Identities=15% Similarity=0.145 Sum_probs=56.8
Q ss_pred chHHHHHHHHcCCeeeee-cCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEE
Q 015826 117 GFPSGTKAAAAGGITTLI-DMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 195 (399)
Q Consensus 117 ~~~~~~~~al~~GvTtv~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~ 195 (399)
+........+..|+..+. |.. +.+ + ..+...++..+.. +.+..... ++-...+..+.+++.|++.+|+
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a-~~~----~-~~~~~~i~~ik~~-~p~~~v~a----gnv~t~~~a~~l~~aGad~v~v 295 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTA-HGH----Q-EKMLEALRAVRAL-DPGVPIVA----GNVVTAEGTRDLVEAGADIVKV 295 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEecc-CCc----c-HHHHHHHHHHHHH-CCCCeEEe----eccCCHHHHHHHHHcCCCEEEE
Confidence 344556677888998864 433 111 1 1222222222221 11222222 2223456788888999999998
Q ss_pred eecCCCC------CCCCCCCHHHHHHHHHHHHhcCCCEEEe--cCChhh
Q 015826 196 FMCPSGI------NDFPMTNASHIKEGLSVLARYKRPLLVH--AEMEKG 236 (399)
Q Consensus 196 ~~~~~~~------~~~~~~~~~~l~~~~~~a~~~g~~v~~H--~~~~~~ 236 (399)
.+.+..+ .+...-.-..+.++.+.|+++|+++..- ..++..
T Consensus 296 gig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~ 344 (479)
T PRK07807 296 GVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRD 344 (479)
T ss_pred CccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHH
Confidence 7655210 1111123345666666777889888763 344443
No 253
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=42.71 E-value=1.8e+02 Score=27.84 Aligned_cols=90 Identities=12% Similarity=0.130 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCC
Q 015826 208 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 287 (399)
Q Consensus 208 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g 287 (399)
-+++.++++++.+.++|+|+.+-.-|++.+..++.-.. ...|.-|+ +......++.+++.++ +
T Consensus 143 gdpekfa~ave~v~~~~~pv~l~s~dpevmkaaLev~~-dqkPllYa---------Ate~n~~e~~klav~y-------~ 205 (467)
T COG1456 143 GDPEKFAEAVEKVAEAGLPVILCSFDPEVMKAALEVVK-DQKPLLYA---------ATEDNWKEFAKLAVEY-------K 205 (467)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhh-ccCceeee---------cccccHHHHHHHHhhc-------C
Confidence 37788999999999999999888888876655444221 10111111 2234567777888765 8
Q ss_pred ceEEEEcCCChhHHHHHHHHHHHCCCC
Q 015826 288 AHLHIVHLSDASSSLDLLMEAKTNGDS 314 (399)
Q Consensus 288 ~~vhi~H~s~~~~~l~~i~~ak~~G~~ 314 (399)
+|+.+.--...+.--.+...+++.|+.
T Consensus 206 vplvl~a~~dl~~lk~la~~~~~~Gi~ 232 (467)
T COG1456 206 VPLVLSAFNDLDDLKNLAVTYAQAGIK 232 (467)
T ss_pred CcEEEeccCCHHHHHHHHHHHHHcCCc
Confidence 887655434441223344556777875
No 254
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=41.26 E-value=1.7e+02 Score=29.64 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-----CCCEEEecCChhh
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-----KRPLLVHAEMEKG 236 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-----g~~v~~H~~~~~~ 236 (399)
.+.++++.+.|++.|.+- . ......+.++.++++..++. ++++.+|++|+..
T Consensus 242 ~~~~~~a~~~Gad~I~l~--D----TvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~G 298 (503)
T PLN03228 242 CKILGEAIKAGATSVGIA--D----TVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLG 298 (503)
T ss_pred HHHHHHHHhcCCCEEEEe--c----CCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcC
Confidence 345566677899877542 1 12356888888888887763 4789999988753
No 255
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=40.74 E-value=2.8e+02 Score=26.44 Aligned_cols=49 Identities=16% Similarity=0.075 Sum_probs=27.0
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015826 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 231 (399)
..++++++.+.|+..|.+.. | ..+....+.+.++++..++.+..+.+|+
T Consensus 75 I~e~~~~~~~~G~~~i~l~g---G--~~p~~~~~~~~~i~~~Ik~~~~~i~~~~ 123 (343)
T TIGR03551 75 IAERAAEAWKAGATEVCIQG---G--IHPDLDGDFYLDILRAVKEEVPGMHIHA 123 (343)
T ss_pred HHHHHHHHHHCCCCEEEEEe---C--CCCCCCHHHHHHHHHHHHHHCCCceEEe
Confidence 34455555566766554431 1 1233456667777777777654455555
No 256
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=40.62 E-value=62 Score=28.27 Aligned_cols=104 Identities=13% Similarity=0.037 Sum_probs=56.1
Q ss_pred CCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCC---ChhhHHHHHHHHHcC
Q 015826 113 TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE---NAYNASALEALLNAG 189 (399)
Q Consensus 113 ~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~G 189 (399)
.+.+++....+.+...|+..++..+ ..++...+...+. .+.+....++... ......++++.++.|
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p----------~~v~~~~~~l~~~-~~~v~~~~~fp~g~~~~~~k~~eve~A~~~G 82 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNP----------CFVPLAREALKGS-GVKVCTVIGFPLGATTTEVKVAEAREAIADG 82 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcH----------HHHHHHHHHcCCC-CcEEEEEEecCCCCCcHHHHHHHHHHHHHcC
Confidence 3456777788889998998887544 1222222222221 1222222222211 223456788999999
Q ss_pred CcEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 015826 190 VLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLV 229 (399)
Q Consensus 190 ~~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~ 229 (399)
++.+.+.+..... .+......+++.++.+.++ |+++-+
T Consensus 83 Adevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkv 121 (203)
T cd00959 83 ADEIDMVINIGALKSGDYEAVYEEIAAVVEACG--GAPLKV 121 (203)
T ss_pred CCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEE
Confidence 9998876544210 0111113356666666665 777666
No 257
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=40.58 E-value=49 Score=29.67 Aligned_cols=105 Identities=11% Similarity=0.073 Sum_probs=60.9
Q ss_pred chHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCC---Chhh-----HHHHHHHHHc
Q 015826 117 GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE---NAYN-----ASALEALLNA 188 (399)
Q Consensus 117 ~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~l~~l~~~ 188 (399)
++....+.++..|+.+++..|. .+....+...+. ....+...++... .... ..++++.++.
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~----------~~~~~~~~~~~~-~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~ 88 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPG----------YVKPAAELLAGS-GVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRL 88 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGG----------GHHHHHHHSTTS-TSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCEEEECHH----------HHHHHHHHhhcc-ccccceEEEeCCCCCccccccccchHHHHHHHHHc
Confidence 5667788888999999875541 112222222221 1123322222211 1122 6788899999
Q ss_pred CCcEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 189 GVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 189 G~~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
|++.+++.+..... .+....-.+++.++.+.|+++|+++.+.+.
T Consensus 89 GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~ 133 (236)
T PF01791_consen 89 GADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPY 133 (236)
T ss_dssp T-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEEC
T ss_pred CCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 99999886644100 000112347889999999999999999853
No 258
>PRK10812 putative DNAse; Provisional
Probab=40.26 E-value=2.9e+02 Score=25.24 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh-hHHHHHHHHHHHCCCCEEEEcccccccccccc---CCCCCc
Q 015826 261 PPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-SSSLDLLMEAKTNGDSITVETCPHYLAFSAEE---IPDGDT 336 (399)
Q Consensus 261 p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~-~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~---~~~~~~ 336 (399)
+...+...+.+.+++|+++ +.|+ +.|...+ .+.++++++.......+ ..|....+.+. +-..|.
T Consensus 105 ~~~~Q~~vf~~ql~lA~e~-------~~Pv-~iH~r~a~~~~l~iL~~~~~~~~~~----v~H~fsG~~~~a~~~~~~G~ 172 (265)
T PRK10812 105 TKVRQQESFRHHIQIGREL-------NKPV-IVHTRDARADTLAILREEKVTDCGG----VLHCFTEDRETAGKLLDLGF 172 (265)
T ss_pred CHHHHHHHHHHHHHHHHHh-------CCCe-EEEeeCchHHHHHHHHhhcCCCCCE----EEEeecCCHHHHHHHHHCCC
Confidence 3445667788889999976 7785 5575432 14555555432111111 13433323221 112354
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCcc--EEeCCC
Q 015826 337 RFKCAPPIRDAANKEKLWEALMDGHID--MLSSDH 369 (399)
Q Consensus 337 ~~~~~Pplr~~~~~~~l~~~l~~G~id--~i~sdh 369 (399)
++-++..+. ....+.+.+.++.+-.| .+.||.
T Consensus 173 ~is~~g~~t-~~~~~~~~~~~~~ipldrlLlETD~ 206 (265)
T PRK10812 173 YISFSGIVT-FRNAEQLRDAARYVPLDRLLVETDS 206 (265)
T ss_pred EEEECeeee-cCccHHHHHHHHhCChhhEEEecCC
Confidence 555554332 12334566666666555 777885
No 259
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=40.03 E-value=1.3e+02 Score=26.74 Aligned_cols=106 Identities=10% Similarity=-0.022 Sum_probs=56.9
Q ss_pred CCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc-C-c--eeEEeeeee-eCCChhhHHHHHHHHH
Q 015826 113 TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-I-Y--VDVGFWGGL-VPENAYNASALEALLN 187 (399)
Q Consensus 113 ~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~-~--~~~~~~~~~-~~~~~~~~~~l~~l~~ 187 (399)
...++.....+.+.++|+..+...+. .+....+...+. . . ++.+...++ .........++++.++
T Consensus 18 ~~~~d~~~~~~~~~~~g~~av~v~~~----------~~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~ 87 (235)
T cd00958 18 PGLEDPEETVKLAAEGGADAVALTKG----------IARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVR 87 (235)
T ss_pred ccccCHHHHHHHHHhcCCCEEEeChH----------HHHhcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHH
Confidence 34567788899999999998875541 111111111111 1 0 010111111 1112223456888889
Q ss_pred cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 188 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 188 ~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
.|++.+.+....... ......+++.++.+.++++|+++.+-
T Consensus 88 ~Ga~~v~~~~~~~~~--~~~~~~~~i~~v~~~~~~~g~~~iie 128 (235)
T cd00958 88 LGADAVGVTVYVGSE--EEREMLEELARVAAEAHKYGLPLIAW 128 (235)
T ss_pred CCCCEEEEEEecCCc--hHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 999987654432110 00112347778888889999999873
No 260
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=39.93 E-value=97 Score=27.32 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=56.6
Q ss_pred CchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEE
Q 015826 116 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 195 (399)
Q Consensus 116 e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~ 195 (399)
+.....+++.+.+|++++---. ++ ....+.++...+... +..+.. ++--..+.++++.++|+..+.
T Consensus 25 e~a~~~a~Ali~gGi~~IEITl-~s---p~a~e~I~~l~~~~p-~~lIGA--------GTVL~~~q~~~a~~aGa~fiV- 90 (211)
T COG0800 25 EEALPLAKALIEGGIPAIEITL-RT---PAALEAIRALAKEFP-EALIGA--------GTVLNPEQARQAIAAGAQFIV- 90 (211)
T ss_pred HHHHHHHHHHHHcCCCeEEEec-CC---CCHHHHHHHHHHhCc-ccEEcc--------ccccCHHHHHHHHHcCCCEEE-
Confidence 3444567788899999985332 22 223455555444332 222111 122235678899999997653
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhch
Q 015826 196 FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 238 (399)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 238 (399)
+ |.++++. ++.|+++|++++-=+-++.++.
T Consensus 91 --s-------P~~~~ev----~~~a~~~~ip~~PG~~TptEi~ 120 (211)
T COG0800 91 --S-------PGLNPEV----AKAANRYGIPYIPGVATPTEIM 120 (211)
T ss_pred --C-------CCCCHHH----HHHHHhCCCcccCCCCCHHHHH
Confidence 2 3456654 4567889999988877766543
No 261
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=39.91 E-value=1.7e+02 Score=25.68 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=55.3
Q ss_pred cCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEE
Q 015826 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 194 (399)
Q Consensus 115 ~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik 194 (399)
.++.....+.++++|++.+---. ++ + ...+.++...+..... +.++. +.+. ..+.++..++.|+.++.
T Consensus 21 ~~~~~~~~~a~~~gGi~~iEvt~-~~-~--~~~~~i~~l~~~~~~~--~~iGa-GTV~-----~~~~~~~a~~aGA~fiv 88 (206)
T PRK09140 21 PDEALAHVGALIEAGFRAIEIPL-NS-P--DPFDSIAALVKALGDR--ALIGA-GTVL-----SPEQVDRLADAGGRLIV 88 (206)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeC-CC-c--cHHHHHHHHHHHcCCC--cEEeE-EecC-----CHHHHHHHHHcCCCEEE
Confidence 34556668889999999764322 21 1 2334444443333211 22221 1111 24578888889998764
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchh
Q 015826 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 239 (399)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~ 239 (399)
. |..+.+. .+.+++.|.++..=+.++.++..
T Consensus 89 s----------p~~~~~v----~~~~~~~~~~~~~G~~t~~E~~~ 119 (206)
T PRK09140 89 T----------PNTDPEV----IRRAVALGMVVMPGVATPTEAFA 119 (206)
T ss_pred C----------CCCCHHH----HHHHHHCCCcEEcccCCHHHHHH
Confidence 2 2345433 44566788888777777766443
No 262
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=39.23 E-value=84 Score=27.57 Aligned_cols=103 Identities=19% Similarity=0.160 Sum_probs=52.0
Q ss_pred HHHHHHHcCCeeeeecCcC-CCCCCCCcHHHHHHHHHHHhccCceeEEe--eee-eeCCC---hhhHHHHHHHHHcCCcE
Q 015826 120 SGTKAAAAGGITTLIDMPL-NSDPSTISTETLKLKVDAAEKRIYVDVGF--WGG-LVPEN---AYNASALEALLNAGVLG 192 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~---~~~~~~l~~l~~~G~~~ 192 (399)
..+..|.++|...+--... .....+.+...++...+.. ...+.+.. .++ +.-+. ..+.+.++.+.+.|+++
T Consensus 11 ~~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG 88 (201)
T PF03932_consen 11 EDALAAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAV--DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADG 88 (201)
T ss_dssp HHHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHT--TSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SE
T ss_pred HHHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhc--CCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCe
Confidence 4567788999988753320 0011112445555554422 11122211 111 11111 12456677777899999
Q ss_pred EEEee-cCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015826 193 LKSFM-CPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (399)
Q Consensus 193 ik~~~-~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 231 (399)
|.+.. ... ...+.+.++++++.|+ ++++++|-
T Consensus 89 ~VfG~L~~d-----g~iD~~~~~~Li~~a~--~~~~tFHR 121 (201)
T PF03932_consen 89 FVFGALTED-----GEIDEEALEELIEAAG--GMPVTFHR 121 (201)
T ss_dssp EEE--BETT-----SSB-HHHHHHHHHHHT--TSEEEE-G
T ss_pred eEEEeECCC-----CCcCHHHHHHHHHhcC--CCeEEEeC
Confidence 87643 332 2478899999999886 89999994
No 263
>PLN02321 2-isopropylmalate synthase
Probab=39.18 E-value=1.9e+02 Score=30.23 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-----CCCEEEecCChhh
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-----KRPLLVHAEMEKG 236 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-----g~~v~~H~~~~~~ 236 (399)
.+.++.+.+.|+..|.+- +......++++.++++..++. ++++.+|++|+..
T Consensus 243 ~~~~~~a~~aGa~~I~L~------DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~G 299 (632)
T PLN02321 243 YRILGEVIKAGATTLNIP------DTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLG 299 (632)
T ss_pred HHHHHHHHHcCCCEEEec------ccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCC
Confidence 345566677898876542 112356888888888887664 4669999988653
No 264
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=39.05 E-value=2.7e+02 Score=24.55 Aligned_cols=111 Identities=15% Similarity=0.174 Sum_probs=52.2
Q ss_pred CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEE-EecCChhhchhHHhhccCcCCchhhhcCCCCCC-hHHHH
Q 015826 189 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLL-VHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRP-PSWEE 266 (399)
Q Consensus 189 G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~-~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~E~ 266 (399)
++.|+--++.. ..+.+.+.++.+++..+++|+.+. .+............+.+-....+ ..++...+ ..+-.
T Consensus 89 ~a~GvnNhmGS-----~~T~~~~~m~~vl~~l~~~gl~FvDS~T~~~s~a~~~A~~~gvp~~~r--dvfLD~~~~~~~I~ 161 (213)
T PF04748_consen 89 GAVGVNNHMGS-----RFTSDREAMRWVLEVLKERGLFFVDSRTTPRSVAPQVAKELGVPAARR--DVFLDNDQDEAAIR 161 (213)
T ss_dssp T-SEEEEEE-C-----CHHC-HHHHHHHHHHHHHTT-EEEE-S--TT-SHHHHHHHCT--EEE---SEETTST-SHHHHH
T ss_pred CcEEEecCCCc-----cccCCHHHHHHHHHHHHHcCCEEEeCCCCcccHHHHHHHHcCCCEEee--ceecCCCCCHHHHH
Confidence 45555544432 124466777777777777776655 33332222221111111000000 11222222 22334
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHH----HHCCCCE
Q 015826 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEA----KTNGDSI 315 (399)
Q Consensus 267 ~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~a----k~~G~~v 315 (399)
..+.++..+|++. |..+-|.|... ++++.+++. +++|+.+
T Consensus 162 ~ql~~~~~~A~~~-------G~aI~Igh~~p--~Tl~~L~~~~~~l~~~gi~l 205 (213)
T PF04748_consen 162 RQLDQAARIARKQ-------GSAIAIGHPRP--ETLEALEEWLPELEAQGIEL 205 (213)
T ss_dssp HHHHHHHHHHHCC-------SEEEEEEE-SC--CHHHHHHHHHHHHHHCTEEE
T ss_pred HHHHHHHHhhhhc-------CcEEEEEcCCH--HHHHHHHHHHhHHhhCCEEE
Confidence 5677778888864 88899999876 567766654 4566543
No 265
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=38.56 E-value=2.3e+02 Score=26.41 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE----eCCCCCCCc
Q 015826 300 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML----SSDHSPTVP 374 (399)
Q Consensus 300 ~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i----~sdh~p~~~ 374 (399)
.+.++++.|++.|+.|-+|+ .++-..++...... ...--+.++++-..+.+. --+|++ ||=|-.+..
T Consensus 115 ~T~~vv~~ah~~gv~VEaEl--G~i~g~ed~~~~~~---~~~~~~TdP~~a~~Fv~~---TgvD~LAvaiGt~HG~y~~ 185 (287)
T PF01116_consen 115 ITREVVEYAHAYGVSVEAEL--GHIGGKEDGIESEE---ETESLYTDPEEAKEFVEE---TGVDALAVAIGTAHGMYKG 185 (287)
T ss_dssp HHHHHHHHHHHTT-EEEEEE--SBSSSSCTTCSSST---T-TTCSSSHHHHHHHHHH---HTTSEEEE-SSSBSSSBSS
T ss_pred HHHHHHHhhhhhCCEEEEEe--eeeeccCCCccccc---cccccccCHHHHHHHHHH---hCCCEEEEecCccccccCC
Confidence 45566777788876555554 44543333222110 012234456655555444 346644 455655543
No 266
>PRK08227 autoinducer 2 aldolase; Validated
Probab=38.12 E-value=45 Score=30.62 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 015826 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229 (399)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 229 (399)
..+++.++.|++++++...... ..-...-+.+.++.++|+++|+|+..
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~Gs--~~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIGS--EYEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecCC--HHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 3477888999998887654421 10011234567788999999999887
No 267
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=37.64 E-value=3.3e+02 Score=25.13 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=49.8
Q ss_pred CchHHHHHHHHcCCeeeeecCcCCCCCCC-----------C-cHHHHHHHHHHHhccCceeEEeeeeeeCCChh---hHH
Q 015826 116 EGFPSGTKAAAAGGITTLIDMPLNSDPST-----------I-STETLKLKVDAAEKRIYVDVGFWGGLVPENAY---NAS 180 (399)
Q Consensus 116 e~~~~~~~~al~~GvTtv~d~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 180 (399)
..+......+...||+.++.+..+ .|.. . ..+.++...+.......+.+..+....+...+ ..+
T Consensus 85 ~~l~~~L~~~~~~Gi~niL~l~GD-~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~i~va~~P~~hp~~~~~~~~~~ 163 (287)
T PF02219_consen 85 EALQSDLLGAHALGIRNILALTGD-PPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFSIGVAGYPEGHPEAPDFEAELK 163 (287)
T ss_dssp HHHHHHHHHHHHTT--EEEEESS--TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSEEEEEE-TTHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEecCC-CCCCCccccCCCchhHHHHHHHHHHHHhcCcccccccccCCCCCccccCHHHHHH
Confidence 345556667789999999876421 1111 0 12222222222221112222222111122212 234
Q ss_pred HHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 015826 181 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKR 225 (399)
Q Consensus 181 ~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~ 225 (399)
.+++-+++|+..+-+ .+.++.+.+.+.++.+++.|.
T Consensus 164 ~l~~Ki~aGA~f~iT---------Q~~fd~~~~~~~~~~~~~~g~ 199 (287)
T PF02219_consen 164 RLKKKIDAGADFIIT---------QPFFDAEAFERFLDRLREAGI 199 (287)
T ss_dssp HHHHHHHTTESEEEE---------EE-SSHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHCCCCEEec---------cccCCHHHHHHHHHHHHHcCC
Confidence 455556789987644 235688999999999999887
No 268
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=37.63 E-value=3.1e+02 Score=25.50 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 208 TNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 208 ~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
.+.+.++++++.|++.+.|+.+-...
T Consensus 26 ~nlE~~~AileaA~e~~sPvIiq~S~ 51 (286)
T COG0191 26 NNLETLQAILEAAEEEKSPVIIQFSE 51 (286)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEecc
Confidence 46788888888888888888887643
No 269
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=37.38 E-value=2e+02 Score=28.11 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCCEEEecCChhh
Q 015826 211 SHIKEGLSVLARYKRPLLVHAEMEKG 236 (399)
Q Consensus 211 ~~l~~~~~~a~~~g~~v~~H~~~~~~ 236 (399)
..|++++..|.+.|+.+.+|..++..
T Consensus 214 yFL~~ViPvAEe~GV~LAiHPDDPP~ 239 (394)
T TIGR00695 214 FFLQEILPVAEEYGVQMAIHPDDPPR 239 (394)
T ss_pred HHHHHHHHHHHHcCCEEEECCCCCCc
Confidence 45789999999999999999988764
No 270
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=36.73 E-value=1.2e+02 Score=24.52 Aligned_cols=26 Identities=8% Similarity=-0.061 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEec
Q 015826 206 PMTNASHIKEGLSVLARYKRPLLVHA 231 (399)
Q Consensus 206 ~~~~~~~l~~~~~~a~~~g~~v~~H~ 231 (399)
|.+..+.|.+++++|++.|+.|.+..
T Consensus 39 p~L~~Dllge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 39 PGLKRDLLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred CCCCcCHHHHHHHHHHHCCCEEEEEE
Confidence 45668899999999999999998874
No 271
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=36.55 E-value=3.5e+02 Score=25.10 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHhcCCCEEEec
Q 015826 209 NASHIKEGLSVLARYKRPLLVHA 231 (399)
Q Consensus 209 ~~~~l~~~~~~a~~~g~~v~~H~ 231 (399)
+-+....++..++++|+.|+.|.
T Consensus 166 d~~~y~dav~r~rkrgIkvc~Hi 188 (312)
T COG1242 166 DFACYVDAVKRLRKRGIKVCTHL 188 (312)
T ss_pred chHHHHHHHHHHHHcCCeEEEEE
Confidence 34556666777788888888886
No 272
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=36.41 E-value=3.4e+02 Score=26.14 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 236 (399)
.+.++++.+.|++.|.+. . .....+++++.++++..++ .++++.+|++|.-.
T Consensus 144 ~~~~~~~~~~g~~~i~l~--D----T~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~G 196 (363)
T TIGR02090 144 IKVFKRAEEAGADRINIA--D----TVGVLTPQKMEELIKKLKENVKLPISVHCHNDFG 196 (363)
T ss_pred HHHHHHHHhCCCCEEEEe--C----CCCccCHHHHHHHHHHHhcccCceEEEEecCCCC
Confidence 344555667899876542 1 1235688888888888775 47889999988653
No 273
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=36.26 E-value=3.2e+02 Score=24.52 Aligned_cols=50 Identities=18% Similarity=0.160 Sum_probs=34.4
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-C-CCEEEecCChh
Q 015826 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-K-RPLLVHAEMEK 235 (399)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g-~~v~~H~~~~~ 235 (399)
+.++.+.+.|+..+.+. . .....+++++.++++..++. + +++.+|++|..
T Consensus 150 ~~~~~~~~~g~~~i~l~--D----t~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~ 201 (265)
T cd03174 150 EVAKALEEAGADEISLK--D----TVGLATPEEVAELVKALREALPDVPLGLHTHNTL 201 (265)
T ss_pred HHHHHHHHcCCCEEEec--h----hcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 44555667898877542 1 12257888888888887764 4 88999998754
No 274
>PRK05406 LamB/YcsF family protein; Provisional
Probab=36.07 E-value=3.3e+02 Score=24.68 Aligned_cols=29 Identities=3% Similarity=0.030 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecCChhh
Q 015826 208 TNASHIKEGLSVLARYKRPLLVHAEMEKG 236 (399)
Q Consensus 208 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 236 (399)
-++..|++.++.|+++|+.+-.|..-++.
T Consensus 41 GDp~~M~~tv~lA~~~gV~IGAHPgypD~ 69 (246)
T PRK05406 41 GDPAVMRRTVRLAKENGVAIGAHPGYPDL 69 (246)
T ss_pred CCHHHHHHHHHHHHHcCCeEccCCCCCcc
Confidence 47899999999999999999999977764
No 275
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=35.84 E-value=83 Score=27.82 Aligned_cols=108 Identities=12% Similarity=-0.008 Sum_probs=59.8
Q ss_pred CCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCC---ChhhHHHHHHHHHc
Q 015826 112 RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE---NAYNASALEALLNA 188 (399)
Q Consensus 112 ~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~ 188 (399)
..+.+++....+.+...|+-+++-.|+ .+....+...+ ..+.+..-.++..+ ......+.++.++.
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p~----------~v~~a~~~l~~-~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~ 82 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNPS----------YVPLAKELLKG-TEVRICTVVGFPLGASTTDVKLYETKEAIKY 82 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCHH----------HHHHHHHHcCC-CCCeEEEEeCCCCCCCcHHHHHHHHHHHHHc
Confidence 345677888899999999999886552 22222222222 12233322222222 12346778888999
Q ss_pred CCcEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 189 GVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 189 G~~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
|++-+.+.+...-. .+....-.+++.++.+.++ |+++-+=.|
T Consensus 83 GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKvIlE 125 (211)
T TIGR00126 83 GADEVDMVINIGALKDGNEEVVYDDIRAVVEACA--GVLLKVIIE 125 (211)
T ss_pred CCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcC--CCeEEEEEe
Confidence 99988876544210 0111122356777777664 777766333
No 276
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=35.75 E-value=3.1e+02 Score=26.91 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=37.4
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCC--------CCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 178 NASALEALLNAGVLGLKSFMCPSGI--------NDFPMTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~--------~~~~~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
..+..+.|+.+|++++++.|....+ -+.|+. -.+..+.++|+++|+|+..-
T Consensus 302 T~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~--TAVy~va~~A~q~gvpviAD 360 (503)
T KOG2550|consen 302 TKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQG--TAVYKVAEFANQFGVPCIAD 360 (503)
T ss_pred eHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcc--cchhhHHHHHHhcCCceeec
Confidence 4567888999999999998865321 012222 35778999999999999876
No 277
>PRK09875 putative hydrolase; Provisional
Probab=35.70 E-value=3.7e+02 Score=25.08 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEE
Q 015826 262 PSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 318 (399)
Q Consensus 262 ~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e 318 (399)
...|...++.+.+.++++ |+|+ ..|.+.....++.++.+++.|++..--
T Consensus 134 t~~E~kvl~Aaa~a~~~T-------G~pi-~~Ht~~~~~g~e~l~il~e~Gvd~~rv 182 (292)
T PRK09875 134 TPLEEKVFIAAALAHNQT-------GRPI-STHTSFSTMGLEQLALLQAHGVDLSRV 182 (292)
T ss_pred CHHHHHHHHHHHHHHHHH-------CCcE-EEcCCCccchHHHHHHHHHcCcCcceE
Confidence 345555666667777765 8886 557543225778888889999864433
No 278
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=35.27 E-value=1.2e+02 Score=29.00 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=35.8
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCC--------CCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 178 NASALEALLNAGVLGLKSFMCPSGI--------NDFPMTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~--------~~~~~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
..+..++|+++|++.+|+.+.+..+ -+.| .-..+.++.+.|+++|.++..-
T Consensus 161 T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~P--QltAV~~~a~~a~~~gvpiIAD 219 (346)
T PRK05096 161 TGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYP--QLSAVIECADAAHGLGGQIVSD 219 (346)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCccccCccccccChh--HHHHHHHHHHHHHHcCCCEEec
Confidence 3567888999999999998766321 1122 2235677788888999988775
No 279
>PRK07360 FO synthase subunit 2; Reviewed
Probab=35.24 E-value=2.5e+02 Score=27.10 Aligned_cols=121 Identities=14% Similarity=0.083 Sum_probs=66.9
Q ss_pred CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc-CceeEEeeee-----ee-CCChhhHHHHHHHH
Q 015826 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGG-----LV-PENAYNASALEALL 186 (399)
Q Consensus 114 ~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~-~~~~~~~~~l~~l~ 186 (399)
+.+.+...++.+...|++.+.-.. +..|.....+.+.+.++..+.. ..+.+..... +. .......+.++++.
T Consensus 92 s~eeI~~~a~~a~~~G~~~i~l~~-G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~Lk 170 (371)
T PRK07360 92 TIAEILEKAAEAVKRGATEVCIQG-GLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVLKALK 170 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEcc-CCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHHHHHH
Confidence 345667778888899999987665 4445433345555555555432 1222221000 00 00112346788888
Q ss_pred HcCCcEEEEeecCCC----C--CCCC-CCCHHHHHHHHHHHHhcCCCEE-----EecCChhh
Q 015826 187 NAGVLGLKSFMCPSG----I--NDFP-MTNASHIKEGLSVLARYKRPLL-----VHAEMEKG 236 (399)
Q Consensus 187 ~~G~~~ik~~~~~~~----~--~~~~-~~~~~~l~~~~~~a~~~g~~v~-----~H~~~~~~ 236 (399)
++|++.+-- ....- . ...| .++.+...++++.|++.|+.+. -|-|+.+.
T Consensus 171 eAGld~~~~-t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~ed 231 (371)
T PRK07360 171 DAGLDSMPG-TAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEH 231 (371)
T ss_pred HcCCCcCCC-cchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHH
Confidence 999876620 00000 0 0012 3576777899999999998764 36666554
No 280
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=35.16 E-value=1.2e+02 Score=27.86 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc--CCCEEEecCChh
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY--KRPLLVHAEMEK 235 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~--g~~v~~H~~~~~ 235 (399)
.+..+++.+.|++.|.+- . .....++..+.++++..++. ++++.+|++|..
T Consensus 152 ~~~~~~~~~~Ga~~i~l~--D----T~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~ 204 (274)
T cd07938 152 AEVAERLLDLGCDEISLG--D----TIGVATPAQVRRLLEAVLERFPDEKLALHFHDTR 204 (274)
T ss_pred HHHHHHHHHcCCCEEEEC--C----CCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 344556667899877542 1 12356888898888888764 588999998764
No 281
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=35.07 E-value=3.8e+02 Score=24.97 Aligned_cols=108 Identities=21% Similarity=0.271 Sum_probs=53.2
Q ss_pred HHHHHHHcCCeeeee-cCcCCCCCCCCcHHHHHHHHHHHhccC-ce--eEEeeeeeeCC---C---hhhHHHHHHHHH-c
Q 015826 120 SGTKAAAAGGITTLI-DMPLNSDPSTISTETLKLKVDAAEKRI-YV--DVGFWGGLVPE---N---AYNASALEALLN-A 188 (399)
Q Consensus 120 ~~~~~al~~GvTtv~-d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~---~---~~~~~~l~~l~~-~ 188 (399)
...+.++..|+|+|. |.. ..|...+.+.-++..+.+...+ .+ .++..++..+. . ....++..+.++ -
T Consensus 91 e~i~~ai~~GftSVM~DgS--~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~T 168 (286)
T PRK08610 91 EKCKEAIDAGFTSVMIDAS--HSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKT 168 (286)
T ss_pred HHHHHHHHcCCCEEEEeCC--CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHH
Confidence 456788999999974 433 2232222222233333332211 11 11111111111 0 123566666665 4
Q ss_pred CCcEEEEeecC-CCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 189 GVLGLKSFMCP-SGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 189 G~~~ik~~~~~-~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
|++.+-+.+.. +|. .+-|..+-+.|+++. ++.++|+.+|-.
T Consensus 169 gvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~---~~~~vPLVLHGg 211 (286)
T PRK08610 169 GIDALAPALGSVHGPYKGEPKLGFKEMEEIG---LSTGLPLVLHGG 211 (286)
T ss_pred CCCEEEeeccccccccCCCCCCCHHHHHHHH---HHHCCCEEEeCC
Confidence 88877654321 221 112456777777764 356999999954
No 282
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=34.80 E-value=2.6e+02 Score=26.54 Aligned_cols=51 Identities=12% Similarity=0.013 Sum_probs=29.7
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
..+.++++.+.|+..|.+.. + ..+..+.+.+.++++..++.+..+.+|+-+
T Consensus 77 i~~~~~~~~~~G~~~i~l~g---G--~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s 127 (340)
T TIGR03699 77 ILQKIEELVAYGGTQILLQG---G--VNPDLGLDYYEDLFRAIKARFPHIHIHSFS 127 (340)
T ss_pred HHHHHHHHHHcCCcEEEEec---C--CCCCCCHHHHHHHHHHHHHHCCCcCCCCCC
Confidence 34455555667776654421 1 123456677777888887776556666543
No 283
>PRK05826 pyruvate kinase; Provisional
Probab=34.52 E-value=4.9e+02 Score=26.14 Aligned_cols=99 Identities=13% Similarity=0.129 Sum_probs=51.2
Q ss_pred HHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCC
Q 015826 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPS 200 (399)
Q Consensus 121 ~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~ 200 (399)
..+.++..|+..+..- -..+.+.++...+.......-+..... -. ++.+.++.++++++. ++++-+ ++.
T Consensus 178 ~i~~ald~g~d~I~~s------fV~saedv~~l~~~l~~~~~~~~~iia-kI-Et~eav~nldeI~~~-~DgImI--grg 246 (465)
T PRK05826 178 DIKFAAEQGVDYIAVS------FVRSAEDVEEARRLLREAGCPHAKIIA-KI-ERAEAVDNIDEIIEA-SDGIMV--ARG 246 (465)
T ss_pred HHHHHHHCCCCEEEEC------CCCCHHHHHHHHHHHHHcCCcCceEEE-EE-cCHHHHHhHHHHHHH-cCEEEE--Ccc
Confidence 3566889999887632 234455555544433221100111111 11 334456777777765 666533 221
Q ss_pred CCC-CCC-CCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 201 GIN-DFP-MTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 201 ~~~-~~~-~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
... ..+ ..-+...+++++.|+++|+++.+=
T Consensus 247 DLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~A 278 (465)
T PRK05826 247 DLGVEIPDEEVPGLQKKIIRKAREAGKPVITA 278 (465)
T ss_pred hhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEE
Confidence 000 001 012356678889999999998864
No 284
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=34.14 E-value=1.8e+02 Score=26.93 Aligned_cols=50 Identities=8% Similarity=0.072 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 176 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 176 ~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
+...+.++++++.--..|.+.|.- ..+.+.+..++++|.+.+++|.+=..
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~-------FTD~dIf~DLleAa~kR~VpVYiLLD 182 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDV-------FTDVDIFCDLLEAANKRGVPVYILLD 182 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeec-------cccHHHHHHHHHHHHhcCCcEEEEec
Confidence 345667777776544445555532 46889999999999999999988654
No 285
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=33.97 E-value=2.3e+02 Score=27.41 Aligned_cols=105 Identities=16% Similarity=0.093 Sum_probs=52.2
Q ss_pred CchHHHHHHHHcCCeeeeecCcCCCCCCCCc-HHHH---HHHHHHHh---ccCceeEEeeeeeeCCChhhHHHHHHHHHc
Q 015826 116 EGFPSGTKAAAAGGITTLIDMPLNSDPSTIS-TETL---KLKVDAAE---KRIYVDVGFWGGLVPENAYNASALEALLNA 188 (399)
Q Consensus 116 e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~-~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 188 (399)
+.+...+...+.+|+.-+.|......+.... .+.+ ....+.+. ++.. -| ...++....+.++..+...+.
T Consensus 146 ~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~-~y--~~nit~~~~e~i~~a~~a~~~ 222 (367)
T cd08205 146 EELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKT-LY--APNITGDPDELRRRADRAVEA 222 (367)
T ss_pred HHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcc-eE--EEEcCCCHHHHHHHHHHHHHc
Confidence 3455667788899999987765222222222 2222 22333333 1111 11 112223334455666666778
Q ss_pred CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCCh
Q 015826 189 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 234 (399)
Q Consensus 189 G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 234 (399)
|++++-+..... .....+.+ .+ ..+++++.|....
T Consensus 223 Gad~vmv~~~~~-----g~~~~~~l---~~---~~~lpi~~H~a~~ 257 (367)
T cd08205 223 GANALLINPNLV-----GLDALRAL---AE---DPDLPIMAHPAFA 257 (367)
T ss_pred CCCEEEEecccc-----cccHHHHH---Hh---cCCCeEEEccCcc
Confidence 998875532211 11222233 22 3489999997543
No 286
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=33.89 E-value=3.8e+02 Score=24.63 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=30.3
Q ss_pred HHHHHHHHH-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 179 ASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 179 ~~~l~~l~~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
.+...++++ .|+.++|+- +.+++.+.++.+.+.|+||+.|.-
T Consensus 96 v~~a~r~~~~aGa~aVkiE------------dg~~~~~~I~al~~agIpV~gHiG 138 (264)
T PRK00311 96 LRNAGRLMKEAGAHAVKLE------------GGEEVAETIKRLVERGIPVMGHLG 138 (264)
T ss_pred HHHHHHHHHHhCCeEEEEc------------CcHHHHHHHHHHHHCCCCEeeeec
Confidence 455566666 899999871 124566667777788999999973
No 287
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=33.86 E-value=34 Score=26.70 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=8.9
Q ss_pred cEEEEccEEEcCCCc
Q 015826 44 QYWLTSKRIVTPKGV 58 (399)
Q Consensus 44 ~~li~n~~vv~~~~~ 58 (399)
+-+-+|-+|++..|+
T Consensus 37 ~~Lk~GD~VvT~gGi 51 (109)
T PRK05886 37 ESLQPGDRVHTTSGL 51 (109)
T ss_pred HhcCCCCEEEECCCe
Confidence 344556677776664
No 288
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=33.72 E-value=1.5e+02 Score=27.51 Aligned_cols=51 Identities=8% Similarity=0.004 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc--CCCEEEecCChh
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY--KRPLLVHAEMEK 235 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~--g~~v~~H~~~~~ 235 (399)
.+.++++.+.|+..|.+. +.....++.++.++++..++. +.++.+|++|..
T Consensus 150 ~~~~~~~~~~G~~~i~l~------DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~ 202 (280)
T cd07945 150 FQLVDFLSDLPIKRIMLP------DTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDY 202 (280)
T ss_pred HHHHHHHHHcCCCEEEec------CCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCC
Confidence 344556667899876542 122357888899888888763 588999998764
No 289
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=33.51 E-value=4e+02 Score=24.75 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecC
Q 015826 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAE 232 (399)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~ 232 (399)
+.++.+++.|+.++-+.-+ . ..++.++.++-+++++.+.+. .++|.+|+.
T Consensus 30 ~li~~l~~~Gv~gi~v~Gs-t--GE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~ 82 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGG-T--GEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG 82 (296)
T ss_pred HHHHHHHhcCCCEEEECCC-C--cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 4455555667776643211 1 234456666666666655442 356677753
No 290
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=33.18 E-value=54 Score=22.59 Aligned_cols=33 Identities=21% Similarity=0.095 Sum_probs=20.7
Q ss_pred ecccccCCCCCCCcCchHHHHHHHHcCCeeeee
Q 015826 102 DVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI 134 (399)
Q Consensus 102 D~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~ 134 (399)
|.|+|................+.+.+.|...+.
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~ 33 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIA 33 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHHcCCCEEE
Confidence 678887654323333455666777777877764
No 291
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=33.04 E-value=1.5e+02 Score=28.66 Aligned_cols=51 Identities=12% Similarity=0.071 Sum_probs=34.4
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 015826 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 229 (399)
..+.+++.+..+...+-+...|+...+ -..+.++|.++.+.|++||+.|..
T Consensus 146 D~~~LE~~~~~~~vkl~iLCnPHNP~G-rvwt~eeL~~i~elc~kh~v~VIS 196 (388)
T COG1168 146 DFDALEKAFVDERVKLFILCNPHNPTG-RVWTKEELRKIAELCLRHGVRVIS 196 (388)
T ss_pred cHHHHHHHHhcCCccEEEEeCCCCCCC-ccccHHHHHHHHHHHHHcCCEEEe
Confidence 357788777766533323334432111 246899999999999999999975
No 292
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=32.85 E-value=3.9e+02 Score=24.43 Aligned_cols=44 Identities=7% Similarity=-0.071 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 231 (399)
.+.+++-+++|+..+-+ .+.++.+.+.+.++.+++.|+.+-+++
T Consensus 150 ~~~L~~Ki~aGA~f~iT---------Q~~fd~~~~~~~~~~~~~~gi~vPIi~ 193 (274)
T cd00537 150 IKRLKRKVDAGADFIIT---------QLFFDNDAFLRFVDRCRAAGITVPIIP 193 (274)
T ss_pred HHHHHHHHHCCCCEEee---------cccccHHHHHHHHHHHHHcCCCCCEEe
Confidence 34455555689977643 235688899999999999885444443
No 293
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=32.80 E-value=87 Score=29.96 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=34.6
Q ss_pred HHHHHHcCCcEEEEeecCCCCCCCC---CCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 182 LEALLNAGVLGLKSFMCPSGINDFP---MTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 182 l~~l~~~G~~~ik~~~~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
++++++.|++.+|+.+.+.. +..+ ....+.+.++.+.|+++|+|+.+.
T Consensus 112 ve~a~~~GAdAVk~lv~~~~-d~~~~~~~~~~~~l~rv~~ec~~~giPlllE 162 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYRP-DEDDAINDRKHAFVERVGAECRANDIPFFLE 162 (340)
T ss_pred HHHHHHcCCCEEEEEEEeCC-CcchHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 67788899999998766531 1111 123346889999999999999886
No 294
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=32.76 E-value=1.4e+02 Score=28.50 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=36.3
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCC------CCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 178 NASALEALLNAGVLGLKSFMCPSGI------NDFPMTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~------~~~~~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
..+..+++++.|++++|+.+.+... .+.+...-..+.++.+.++++++++...
T Consensus 160 T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaD 218 (343)
T TIGR01305 160 TGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISD 218 (343)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEc
Confidence 3567788889999999998665321 1222234556777777777788888775
No 295
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=32.67 E-value=4.1e+02 Score=24.69 Aligned_cols=109 Identities=19% Similarity=0.201 Sum_probs=53.3
Q ss_pred HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCc-e--eEEeeeeeeCC---C---hhhHHHHHHHHH-cC
Q 015826 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY-V--DVGFWGGLVPE---N---AYNASALEALLN-AG 189 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~---~---~~~~~~l~~l~~-~G 189 (399)
...+.+++.|+|+|.--. +..|...+.+..++..+.+...+. + .++..++..+. . ....++..++++ -|
T Consensus 88 e~i~~Ai~~GftSVM~Dg-S~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~Tg 166 (283)
T PRK07998 88 EDVKQAVRAGFTSVMIDG-AALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTG 166 (283)
T ss_pred HHHHHHHHcCCCEEEEeC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhC
Confidence 456778999999975322 223322233333344444332221 1 12221111111 0 113455666664 58
Q ss_pred CcEEEEeecC-CCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 190 VLGLKSFMCP-SGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 190 ~~~ik~~~~~-~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
++.+.+.+.. +|....|..+-+.|+++.+ +.++|+.+|-.
T Consensus 167 vD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~---~~~vPLVlHGg 207 (283)
T PRK07998 167 CDMLAVSIGNVHGLEDIPRIDIPLLKRIAE---VSPVPLVIHGG 207 (283)
T ss_pred cCeeehhccccccCCCCCCcCHHHHHHHHh---hCCCCEEEeCC
Confidence 8877664422 2211114456666666544 46999999954
No 296
>PRK06256 biotin synthase; Validated
Probab=32.47 E-value=2.2e+02 Score=26.96 Aligned_cols=111 Identities=15% Similarity=0.076 Sum_probs=57.1
Q ss_pred cCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEE
Q 015826 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 194 (399)
Q Consensus 115 ~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik 194 (399)
.+.+....+.+.+.|++.+.....+..|.....+.+.+.++.......+.+....+. -..+.++.+.++|+..+.
T Consensus 93 ~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~-----l~~e~l~~LkeaG~~~v~ 167 (336)
T PRK06256 93 IEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL-----LTEEQAERLKEAGVDRYN 167 (336)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc-----CCHHHHHHHHHhCCCEEe
Confidence 345556667777788876553321222222222334444444433322232222221 124567788888988765
Q ss_pred EeecCCCC--CC-CCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 195 SFMCPSGI--ND-FPMTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 195 ~~~~~~~~--~~-~~~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
..+..+.. .. .+..+.+...++++.+++.|+.+.++
T Consensus 168 ~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~ 206 (336)
T PRK06256 168 HNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSG 206 (336)
T ss_pred cCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccC
Confidence 42211000 00 01235677778889999999877665
No 297
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=32.33 E-value=4.2e+02 Score=25.21 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHhcCCC--EEEecCC
Q 015826 207 MTNASHIKEGLSVLARYKRP--LLVHAEM 233 (399)
Q Consensus 207 ~~~~~~l~~~~~~a~~~g~~--v~~H~~~ 233 (399)
..+-++++.+++.+++.|.+ +..||-+
T Consensus 156 ma~~~ei~~av~~~r~~g~~~i~LLhC~s 184 (347)
T COG2089 156 MATIEEIEEAVAILRENGNPDIALLHCTS 184 (347)
T ss_pred cccHHHHHHHHHHHHhcCCCCeEEEEecC
Confidence 45677888888888888887 7788754
No 298
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=32.27 E-value=4.3e+02 Score=24.76 Aligned_cols=135 Identities=20% Similarity=0.281 Sum_probs=68.4
Q ss_pred EeCCCCEEecceeecccccCCCCCCCcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc---CceeE
Q 015826 89 VDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR---IYVDV 165 (399)
Q Consensus 89 ID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 165 (399)
.|-....--|.++|+|.|+........ ...-...+...|+.-++.+.. . .+..+...+.+... ....+
T Consensus 7 ~d~~~~~~~~~~~~~~~~~~~~~~~~d--~s~v~~~a~~~~v~~~~v~gt---~----~~d~~~~~~l~~~y~~~v~~t~ 77 (296)
T KOG3020|consen 7 LDDGRNFTNPMLEDIYCHIQAHPSDSD--ASQVLERAVQAGVSKLIVTGT---S----LKDSKEALELAEKYPGSVYPTF 77 (296)
T ss_pred hhhhhhhcchhhchhhhccccCCCCcc--chHHHHHHHhccceEEEEeCC---C----cchHHHHHHHHhhCCCceeecc
Confidence 344445566789999999876533222 223345677889998887651 1 12223333333322 11222
Q ss_pred EeeeeeeCC------ChhhHHHHHHHHHcCCc--EEEEeecCCCCCC--CCCC----CHHHHHHHHHHHHhcCCCEEEec
Q 015826 166 GFWGGLVPE------NAYNASALEALLNAGVL--GLKSFMCPSGIND--FPMT----NASHIKEGLSVLARYKRPLLVHA 231 (399)
Q Consensus 166 ~~~~~~~~~------~~~~~~~l~~l~~~G~~--~ik~~~~~~~~~~--~~~~----~~~~l~~~~~~a~~~g~~v~~H~ 231 (399)
+.+...... .....+.+..+++.+.. .+.+ +.-|.+. ...+ ....+++-+++|.++.+|+.+|+
T Consensus 78 G~HP~~~~~~~~~~~~~~~~~~L~~~~~~~~~~k~vAi--GEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~ 155 (296)
T KOG3020|consen 78 GVHPHFSQEFSDQSRKEKFLDTLLSIIENGFLPKVVAI--GECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHC 155 (296)
T ss_pred CcCCCcccchhhccchhhHHHHHHHHHhhcccCCeEEe--eccccccchhccCChHHHHHHHHHHHHHHHHccCCeeeec
Confidence 222111110 01235566666665311 1111 1111110 0012 23457788999999999999999
Q ss_pred CCh
Q 015826 232 EME 234 (399)
Q Consensus 232 ~~~ 234 (399)
++.
T Consensus 156 r~a 158 (296)
T KOG3020|consen 156 RSA 158 (296)
T ss_pred hhh
Confidence 764
No 299
>PRK05927 hypothetical protein; Provisional
Probab=32.04 E-value=4.5e+02 Score=25.23 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=31.0
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhh
Q 015826 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 236 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 236 (399)
..+.+++..+.|+..+.+. +|. .|..+.+.+.++++..++.---+.+|+-+..+
T Consensus 81 i~~~a~~~~~~G~~~i~i~---gG~--~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~e 134 (350)
T PRK05927 81 FRSLMQRYVSAGVKTVLLQ---GGV--HPQLGIDYLEELVRITVKEFPSLHPHFFSAVE 134 (350)
T ss_pred HHHHHHHHHHCCCCEEEEe---CCC--CCCCCHHHHHHHHHHHHHHCCCCcccCCCHHH
Confidence 4455556666787666532 221 13456777778887777642236666655544
No 300
>PRK07360 FO synthase subunit 2; Reviewed
Probab=31.80 E-value=4.5e+02 Score=25.38 Aligned_cols=50 Identities=14% Similarity=0.037 Sum_probs=29.5
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCC-HHHHHHHHHHHHhcCCCEEEecC
Q 015826 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTN-ASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~-~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
..+..+++.+.|+..+.+.. | ..|... .+.+.++++..++.-..+.+|+-
T Consensus 96 I~~~a~~a~~~G~~~i~l~~---G--~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~ 146 (371)
T PRK07360 96 ILEKAAEAVKRGATEVCIQG---G--LHPAADSLEFYLEILEAIKEEFPDIHLHAF 146 (371)
T ss_pred HHHHHHHHHhCCCCEEEEcc---C--CCCCCCcHHHHHHHHHHHHHhCCCcceeeC
Confidence 34555566677888776542 1 123333 67778888888874334666653
No 301
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=31.68 E-value=1.5e+02 Score=27.60 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cC-CCEEEecCChh
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YK-RPLLVHAEMEK 235 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g-~~v~~H~~~~~ 235 (399)
.+..+++.+.|++.|.+- . .....++.++.++++..++ .+ .++.+|++|..
T Consensus 158 ~~~~~~~~~~G~d~i~l~--D----T~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~ 210 (287)
T PRK05692 158 ADVAERLFALGCYEISLG--D----TIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTY 210 (287)
T ss_pred HHHHHHHHHcCCcEEEec--c----ccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 455566677899876542 1 1235688888888888775 44 78999998764
No 302
>PLN02591 tryptophan synthase
Probab=31.50 E-value=4e+02 Score=24.21 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015826 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (399)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 231 (399)
+-++++.+.|++++-+ + -+..++.....+.++++|+....=+
T Consensus 97 ~F~~~~~~aGv~Gvii-------p---DLP~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 97 KFMATIKEAGVHGLVV-------P---DLPLEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred HHHHHHHHcCCCEEEe-------C---CCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 4567777899998865 2 2456899999999999998765543
No 303
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=31.02 E-value=4.4e+02 Score=24.51 Aligned_cols=109 Identities=16% Similarity=0.225 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCeeeee-cCcCCCCCCCCcHHHHHHHHHHHhccC-ce--eEEeeeeeeCC----C----hhhHHHHHHHH
Q 015826 119 PSGTKAAAAGGITTLI-DMPLNSDPSTISTETLKLKVDAAEKRI-YV--DVGFWGGLVPE----N----AYNASALEALL 186 (399)
Q Consensus 119 ~~~~~~al~~GvTtv~-d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~----~----~~~~~~l~~l~ 186 (399)
....+.|++.|+|+|. |.. ..|...+.+.-++..+.+...+ .+ .++..++..++ . ....++..+.+
T Consensus 87 ~e~i~~Ai~~GftSVM~DgS--~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv 164 (284)
T PRK09195 87 FDDIAQKVRSGVRSVMIDGS--HLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFV 164 (284)
T ss_pred HHHHHHHHHcCCCEEEeCCC--CCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHH
Confidence 3557889999999974 332 2232222222233333332221 11 11111111111 0 11345666666
Q ss_pred H-cCCcEEEEeecC-CCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 187 N-AGVLGLKSFMCP-SGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 187 ~-~G~~~ik~~~~~-~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
+ -|++.+-+.... +|. ...|..+-+.|+++-+ ..++|+..|=.
T Consensus 165 ~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~---~~~vPLVLHGg 210 (284)
T PRK09195 165 EATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQ---WVNIPLVLHGA 210 (284)
T ss_pred HHHCcCEEeeccCccccccCCCCcCCHHHHHHHHH---HhCCCeEEecC
Confidence 5 588876654322 221 1124577788877754 35899999953
No 304
>PRK13404 dihydropyrimidinase; Provisional
Probab=30.64 E-value=5.7e+02 Score=25.67 Aligned_cols=29 Identities=10% Similarity=0.259 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHhcCCCE-EEecCChhh
Q 015826 208 TNASHIKEGLSVLARYKRPL-LVHAEMEKG 236 (399)
Q Consensus 208 ~~~~~l~~~~~~a~~~g~~v-~~H~~~~~~ 236 (399)
.....+.++++.|+++|.++ .+|+.....
T Consensus 218 ~E~~~v~~~~~la~~~g~~~hi~Hvs~~~~ 247 (477)
T PRK13404 218 AEREATHRAIALAELVDVPILIVHVSGREA 247 (477)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 45567889999999999999 679877654
No 305
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=30.38 E-value=3e+02 Score=26.67 Aligned_cols=106 Identities=10% Similarity=0.069 Sum_probs=60.9
Q ss_pred CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEE
Q 015826 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL 193 (399)
Q Consensus 114 ~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~i 193 (399)
+.+.+...++.+...|++.+.-.. +..|.....+.+.+.++...... ..+.... .....++++.+.++|+.++
T Consensus 105 s~eEI~~~a~~~~~~Gv~~i~lvg-Ge~p~~~~~e~l~~~i~~Ik~~~-p~i~i~~-----g~lt~e~l~~Lk~aGv~r~ 177 (371)
T PRK09240 105 DEEEIEREMAAIKKLGFEHILLLT-GEHEAKVGVDYIRRALPIAREYF-SSVSIEV-----QPLSEEEYAELVELGLDGV 177 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhC-CCceecc-----CCCCHHHHHHHHHcCCCEE
Confidence 345566667778889999986554 33343334555555555543221 1111111 1123567888999999988
Q ss_pred EEeecCCC------CCC-CCCCCHHHHHHHHHHHHhcCCC
Q 015826 194 KSFMCPSG------IND-FPMTNASHIKEGLSVLARYKRP 226 (399)
Q Consensus 194 k~~~~~~~------~~~-~~~~~~~~l~~~~~~a~~~g~~ 226 (399)
.+...... ... -+..+.+...+.++.|++.|+.
T Consensus 178 ~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 217 (371)
T PRK09240 178 TVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIR 217 (371)
T ss_pred EEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 76543210 000 0123567777888999999886
No 306
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=30.36 E-value=4.6e+02 Score=24.50 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=20.8
Q ss_pred HHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCC
Q 015826 270 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNG 312 (399)
Q Consensus 270 ~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G 312 (399)
.+.++.+++.+. ....-+.+.|.-+.++.++.+...|+-+
T Consensus 148 l~~i~~a~~~Gi---~~~s~~iiG~~Et~ed~~~~l~~lr~l~ 187 (309)
T TIGR00423 148 LEVIKTAHRLGI---PTTATMMFGHVENPEHRVEHLLRIRKIQ 187 (309)
T ss_pred HHHHHHHHHcCC---CceeeEEecCCCCHHHHHHHHHHHHhhc
Confidence 345556665421 1234455666555435566666666543
No 307
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=30.18 E-value=2.5e+02 Score=24.98 Aligned_cols=24 Identities=17% Similarity=0.089 Sum_probs=14.3
Q ss_pred CcCchHHHHHHHHcCCeeeeecCc
Q 015826 114 EWEGFPSGTKAAAAGGITTLIDMP 137 (399)
Q Consensus 114 ~~e~~~~~~~~al~~GvTtv~d~~ 137 (399)
+.+++....+.+...|+-+++-.|
T Consensus 20 t~~~i~~~~~~A~~~~~~avcv~p 43 (221)
T PRK00507 20 TEEDIDKLCDEAKEYGFASVCVNP 43 (221)
T ss_pred CHHHHHHHHHHHHHhCCeEEEECH
Confidence 445566666666666666665443
No 308
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=30.14 E-value=3.2e+02 Score=25.86 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 177 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
.+.+.++.++..|+++|-+. + .+.+.+...++.+++.|+||..+-.
T Consensus 68 ~q~~~i~~li~~~vdgIiv~--~--------~d~~al~~~l~~a~~~gIpVV~~d~ 113 (336)
T PRK15408 68 GQVQLINNFVNQGYNAIIVS--A--------VSPDGLCPALKRAMQRGVKVLTWDS 113 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEe--c--------CCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 34567788888999988652 1 3556677888888899999988743
No 309
>PLN02591 tryptophan synthase
Probab=30.13 E-value=4.2e+02 Score=24.06 Aligned_cols=125 Identities=20% Similarity=0.145 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcC
Q 015826 177 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 256 (399)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (399)
...+.++.+.+.|++-+.+.+-++ .|..+-..++++...|-+.|..+.-=. +.+. .+.+. .. -|.-...+
T Consensus 17 ~~~~~~~~l~~~Gad~iElGiPfS----DP~aDGpvIq~a~~rAL~~G~~~~~~~---~~~~-~~r~~-~~-~p~ilm~Y 86 (250)
T PLN02591 17 TTAEALRLLDACGADVIELGVPYS----DPLADGPVIQAAATRALEKGTTLDSVI---SMLK-EVAPQ-LS-CPIVLFTY 86 (250)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCC----CCcccCHHHHHHHHHHHHcCCCHHHHH---HHHH-HHhcC-CC-CCEEEEec
Confidence 345567777788888887754332 134455566666655555443321000 0000 00000 00 01111111
Q ss_pred CCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEcccc
Q 015826 257 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH 322 (399)
Q Consensus 257 ~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~ 322 (399)
+ .|. -..++.+.+..+++.+..| +.+.-+.-. +.-+..+.+++.|+....-++|.
T Consensus 87 ~--N~i--~~~G~~~F~~~~~~aGv~G------viipDLP~e-e~~~~~~~~~~~gl~~I~lv~Pt 141 (250)
T PLN02591 87 Y--NPI--LKRGIDKFMATIKEAGVHG------LVVPDLPLE-ETEALRAEAAKNGIELVLLTTPT 141 (250)
T ss_pred c--cHH--HHhHHHHHHHHHHHcCCCE------EEeCCCCHH-HHHHHHHHHHHcCCeEEEEeCCC
Confidence 1 111 1246777777777763222 455556555 77788888999999877777774
No 310
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=29.87 E-value=4.3e+02 Score=24.08 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=32.3
Q ss_pred hhHHHHHHHHH-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 177 YNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 177 ~~~~~l~~l~~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
+..+...++++ .|+.++|+- +.+++.+.++.+.+.|+||+.|.-
T Consensus 91 ~av~~a~r~~~~aGa~aVkiE------------d~~~~~~~I~al~~agipV~gHiG 135 (254)
T cd06557 91 QALRNAARLMKEAGADAVKLE------------GGAEVAETIRALVDAGIPVMGHIG 135 (254)
T ss_pred HHHHHHHHHHHHhCCeEEEEc------------CcHHHHHHHHHHHHcCCCeecccc
Confidence 34555566666 999999871 224677777888899999999973
No 311
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=29.80 E-value=4.3e+02 Score=24.03 Aligned_cols=105 Identities=10% Similarity=0.026 Sum_probs=57.4
Q ss_pred HHHHHHHcCCeeeeecCcC-CCCCCCCcHHHHHHHHHHHhccCceeEEeee-eeeCCCh---hhHHHHHHHHHcCCcEEE
Q 015826 120 SGTKAAAAGGITTLIDMPL-NSDPSTISTETLKLKVDAAEKRIYVDVGFWG-GLVPENA---YNASALEALLNAGVLGLK 194 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~l~~l~~~G~~~ik 194 (399)
..+..|.++|-..+--... .....+.+...++...+...-..++=+.+.+ .+.-+.. .+.+.++.+.+.|+++|.
T Consensus 12 ~~a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV 91 (248)
T PRK11572 12 ECALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLV 91 (248)
T ss_pred HHHHHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 4567788889888743320 0011122455666555432211111111111 1111111 245566777788999987
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
+..-.+ ....+.+.++++++.|+ ++++.+|
T Consensus 92 ~G~L~~----dg~vD~~~~~~Li~~a~--~~~vTFH 121 (248)
T PRK11572 92 TGVLDV----DGHVDMPRMRKIMAAAG--PLAVTFH 121 (248)
T ss_pred EeeECC----CCCcCHHHHHHHHHHhc--CCceEEe
Confidence 653222 12578999999999884 7899999
No 312
>PRK05926 hypothetical protein; Provisional
Probab=29.78 E-value=2.6e+02 Score=27.08 Aligned_cols=107 Identities=12% Similarity=0.024 Sum_probs=0.0
Q ss_pred CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc-CceeEEeeeee------eCCChhhHHHHHHHH
Q 015826 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGL------VPENAYNASALEALL 186 (399)
Q Consensus 114 ~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~l~~l~ 186 (399)
+.+.+...++.+ ..|+|.+.-.. +..|. ...+.+.+..+..... ..+.+....+. ........+.++++.
T Consensus 100 s~eeI~~~a~~a-~~G~~ei~iv~-G~~p~-~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~Lk 176 (370)
T PRK05926 100 TPDQLVQSIKEN-PSPITETHIVA-GCFPS-CNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLK 176 (370)
T ss_pred CHHHHHHHHHHH-hcCCCEEEEEe-CcCCC-CCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHH
Q ss_pred HcCCcEEEEe------------ecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 015826 187 NAGVLGLKSF------------MCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229 (399)
Q Consensus 187 ~~G~~~ik~~------------~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 229 (399)
++|...+... +.+. .++.++..++++.|++.|+++..
T Consensus 177 eAGl~~~~g~GaEi~~e~~r~~~~p~------~~t~~e~l~~i~~a~~~Gi~~~s 225 (370)
T PRK05926 177 IAGLDSIPGGGAEILVDEIRETLAPG------RLSSQGFLEIHKTAHSLGIPSNA 225 (370)
T ss_pred HcCcCccCCCCchhcCHHHHHhhCCC------CCCHHHHHHHHHHHHHcCCcccC
No 313
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=29.76 E-value=4.6e+02 Score=24.31 Aligned_cols=108 Identities=17% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeee---------CCChhhHHHHHHHHHc-
Q 015826 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV---------PENAYNASALEALLNA- 188 (399)
Q Consensus 119 ~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~l~~~- 188 (399)
....+.++++|+|++.-=. ...+.....+..++..+.+...+..--.-.+.+. .......++..+..+.
T Consensus 87 ~e~i~~Al~~G~tsVm~d~-s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~t 165 (281)
T PRK06806 87 FEKIKEALEIGFTSVMFDG-SHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEET 165 (281)
T ss_pred HHHHHHHHHcCCCEEEEcC-CCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhh
Q ss_pred CCcEEEE--eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 189 GVLGLKS--FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 189 G~~~ik~--~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
|++.+.+ ..........+..+.+.|+++.+.. ++|+..|
T Consensus 166 g~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~---~iPlV~h 206 (281)
T PRK06806 166 DVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV---HIPLVLH 206 (281)
T ss_pred CCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc---CCCEEEE
No 314
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=29.38 E-value=4.6e+02 Score=24.25 Aligned_cols=107 Identities=21% Similarity=0.175 Sum_probs=53.1
Q ss_pred HHHHHHHcCCeeeee-cCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCC---C-------hhhHHHHHHHHH-
Q 015826 120 SGTKAAAAGGITTLI-DMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE---N-------AYNASALEALLN- 187 (399)
Q Consensus 120 ~~~~~al~~GvTtv~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~l~~l~~- 187 (399)
.....+++.|+|++. |.. ..|...+.+.-++..+.+...+ +.+-...+...+ . ....++..+.++
T Consensus 83 ~~i~~ai~~GftSVMiD~S--~l~~eeNi~~t~~vv~~ah~~g-v~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~ 159 (276)
T cd00947 83 ELIKRAIRAGFSSVMIDGS--HLPFEENVAKTKEVVELAHAYG-VSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEE 159 (276)
T ss_pred HHHHHHHHhCCCEEEeCCC--CCCHHHHHHHHHHHHHHHHHcC-CeEEEEEeeecCccCCcccccccCCCHHHHHHHHHH
Confidence 456788999999974 433 2332222222233333333221 122111111111 0 113566666665
Q ss_pred cCCcEEEEeecC-CCCC--CCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 188 AGVLGLKSFMCP-SGIN--DFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 188 ~G~~~ik~~~~~-~~~~--~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
-|++.+-+.+.. +|.. +.|..+-+.|+++-+. .++|+..|-.
T Consensus 160 TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~---~~vPLVlHGg 204 (276)
T cd00947 160 TGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAER---VNVPLVLHGG 204 (276)
T ss_pred HCCCEEEeccCccccccCCCCCccCHHHHHHHHHH---hCCCEEEeCC
Confidence 488876654322 2211 1355677777766554 4899999953
No 315
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=28.85 E-value=1.5e+02 Score=27.00 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=31.1
Q ss_pred hhHHHHHHHHH-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 177 YNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 177 ~~~~~l~~l~~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
+.++.-.++++ .|+..+|+- .-+++...++...+.|+||+.|.-
T Consensus 94 ~a~~nA~r~~ke~gA~aVKlE------------GG~~~~~~i~~L~~~gIPV~gHiG 138 (268)
T COG0413 94 QALKNAARLMKEAGADAVKLE------------GGEEMAETIKRLTERGIPVMGHIG 138 (268)
T ss_pred HHHHHHHHHHHHhCCCEEEEc------------CCHHHHHHHHHHHHcCCceEEEec
Confidence 33444455555 889999972 115667777777889999999984
No 316
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=28.85 E-value=2.9e+02 Score=25.73 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE----eCCCCCCC
Q 015826 300 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML----SSDHSPTV 373 (399)
Q Consensus 300 ~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i----~sdh~p~~ 373 (399)
.+-++++.|+..|+.|-+|+- ++-..++....... .--+.++++-..+.+.- | +|++ ||=|-.+.
T Consensus 116 ~T~evv~~Ah~~gv~VEaElG--~igg~ed~~~~~~~----~~~~T~peea~~Fv~~T--g-vD~LAvaiGt~HG~Y~ 184 (286)
T PRK12738 116 LVKSVVDFCHSQDCSVEAELG--RLGGVEDDMSVDAE----SAFLTDPQEAKRFVELT--G-VDSLAVAIGTAHGLYS 184 (286)
T ss_pred HHHHHHHHHHHcCCeEEEEEE--eeCCccCCcccccc----hhcCCCHHHHHHHHHHh--C-CCEEEeccCcccCCCC
Confidence 456677777888877766653 44333221111110 01145666666665544 3 6754 46676664
No 317
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=28.69 E-value=1.8e+02 Score=26.60 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHH
Q 015826 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 241 (399)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~ 241 (399)
-++.+....|++.+-+.. ..++++.+..+++.|+++|+-+.+-+++..+....+
T Consensus 122 ~QI~eA~~~GADaVLLI~--------~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al 175 (254)
T PF00218_consen 122 YQIYEARAAGADAVLLIA--------AILSDDQLEELLELAHSLGLEALVEVHNEEELERAL 175 (254)
T ss_dssp HHHHHHHHTT-SEEEEEG--------GGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred HHHHHHHHcCCCEeehhH--------HhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHH
Confidence 457777789999886643 247889999999999999999988888877765444
No 318
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=28.59 E-value=1.1e+02 Score=27.92 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
...+++.++.|++.+.......... -.-.-+.+.++++.|+++|+|+..++.
T Consensus 100 ~~~ve~ai~lgadAV~~~Vy~Gse~--e~~~i~~~~~v~~~a~~~Gmp~v~~~Y 151 (265)
T COG1830 100 VATVEDAIRLGADAVGATVYVGSET--EREMIENISQVVEDAHELGMPLVAWAY 151 (265)
T ss_pred eeeHHHHHhCCCcEEEEEEecCCcc--hHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 3567888888988776544332100 012335667788899999999999863
No 319
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=28.39 E-value=2.9e+02 Score=26.83 Aligned_cols=128 Identities=14% Similarity=0.017 Sum_probs=0.0
Q ss_pred CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhc-------cCceeEEeeeeeeCCChhhHHHHHHHH
Q 015826 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-------RIYVDVGFWGGLVPENAYNASALEALL 186 (399)
Q Consensus 114 ~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~l~ 186 (399)
+.+.+....+.+.+.|+|.+.-.. +.+|..... -+....+.... ..+-...+............+.+++|.
T Consensus 91 s~eeI~~~~~~~~~~G~~Evli~g-G~~p~~~~~-y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk 168 (370)
T COG1060 91 SPEEILEEVREAVKRGITEVLIVG-GEHPELSLE-YYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLK 168 (370)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEec-CcCCCcchH-HHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHHH
Q ss_pred HcCCcEEEEeecCCCC------CCCCCCCHHHHHHHHHHHHhcCCCE-----EEecCChhhchhHHhh
Q 015826 187 NAGVLGLKSFMCPSGI------NDFPMTNASHIKEGLSVLARYKRPL-----LVHAEMEKGSERHVKL 243 (399)
Q Consensus 187 ~~G~~~ik~~~~~~~~------~~~~~~~~~~l~~~~~~a~~~g~~v-----~~H~~~~~~~~~~~~~ 243 (399)
++|.+.+-.+-..--. ...+..+.+...++.+.|++.|++. ..|.|+....-..+.+
T Consensus 169 ~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~E~~ed~~~hl~~ 236 (370)
T COG1060 169 EAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEH 236 (370)
T ss_pred HcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEEecCCHHHHHHHHHH
No 320
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=28.33 E-value=4.1e+02 Score=26.90 Aligned_cols=52 Identities=23% Similarity=0.214 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-----CCCEEEecCChhh
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-----KRPLLVHAEMEKG 236 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-----g~~v~~H~~~~~~ 236 (399)
.+.++.+.+.|+..|.+- +......++++.++++..++. ++++.+|++|+..
T Consensus 149 ~~~~~~~~~~Ga~~i~l~------DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~G 205 (494)
T TIGR00973 149 ARIVEAAINAGATTINIP------DTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLG 205 (494)
T ss_pred HHHHHHHHHcCCCEEEeC------CCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCC
Confidence 344555667898876542 112356888888888887654 4679999988753
No 321
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=28.12 E-value=1.7e+02 Score=25.89 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 015826 176 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229 (399)
Q Consensus 176 ~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 229 (399)
....+.++.++..|+++|-+... +.+.+...++.+++.|+||..
T Consensus 42 ~~q~~~i~~~i~~~~d~Iiv~~~----------~~~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 42 EEQIEQIEQAISQGVDGIIVSPV----------DPDSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHHHHHHTTESEEEEESS----------STTTTHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEecCC----------CHHHHHHHHHHHhhcCceEEE
Confidence 34567888888999998876422 223455677788889998876
No 322
>PRK09389 (R)-citramalate synthase; Provisional
Probab=27.93 E-value=5.3e+02 Score=26.09 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015826 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (399)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 236 (399)
+.++.+.+.|+..|.+- . ......+.++.++++..++ .++++.+|++|...
T Consensus 147 ~~~~~~~~~Ga~~i~l~--D----TvG~~~P~~~~~lv~~l~~~~~v~l~~H~HND~G 198 (488)
T PRK09389 147 ELYKAGIEAGADRICFC--D----TVGILTPEKTYELFKRLSELVKGPVSIHCHNDFG 198 (488)
T ss_pred HHHHHHHhCCCCEEEEe--c----CCCCcCHHHHHHHHHHHHhhcCCeEEEEecCCcc
Confidence 44455667899876542 1 1235678888888887765 47899999988753
No 323
>PTZ00413 lipoate synthase; Provisional
Probab=27.61 E-value=5.5e+02 Score=25.07 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=38.9
Q ss_pred eeeCCChhhHHHHHHHHHcCCcEEEE--eecCCCCCCCC---CCCHHHHHHHHHHHHhcCCCE
Q 015826 170 GLVPENAYNASALEALLNAGVLGLKS--FMCPSGINDFP---MTNASHIKEGLSVLARYKRPL 227 (399)
Q Consensus 170 ~~~~~~~~~~~~l~~l~~~G~~~ik~--~~~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~v 227 (399)
|+.....+.++.+.++.+.|++.+-+ |+.|+. .+.| +.++++++..-+.|.+.|...
T Consensus 304 GLGET~eEvie~m~dLrelGVDivtIGQYL~Ps~-~h~~V~~yv~P~~F~~~~~~a~~~Gf~~ 365 (398)
T PTZ00413 304 GLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTK-TRLKVSRYAHPKEFEMWEEEAMKMGFLY 365 (398)
T ss_pred cCCCCHHHHHHHHHHHHHcCCcEEeeccccCCCc-ccCCceeccCHHHHHHHHHHHHHcCCce
Confidence 33333445567777888889887654 555543 2222 678999999999999998763
No 324
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=27.45 E-value=3.3e+02 Score=26.30 Aligned_cols=108 Identities=10% Similarity=0.078 Sum_probs=62.3
Q ss_pred CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc-CceeEEeeeeeeCCChhhHHHHHHHHHcCCcE
Q 015826 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVPENAYNASALEALLNAGVLG 192 (399)
Q Consensus 114 ~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ 192 (399)
+.+.+...++.+...|++.+.-.. +..|.....+.+.+.++..... ..+.+.. ..-..++++++.++|+..
T Consensus 104 s~eEI~~~a~~~~~~Gv~~i~lvg-Ge~p~~~~~e~l~eii~~Ik~~~p~i~Iei-------~~lt~e~~~~Lk~aGv~r 175 (366)
T TIGR02351 104 NEEEIEREIEAIKKSGFKEILLVT-GESEKAAGVEYIAEAIKLAREYFSSLAIEV-------QPLNEEEYKKLVEAGLDG 175 (366)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhCCcccccc-------ccCCHHHHHHHHHcCCCE
Confidence 345566777788889999987664 3344444455566655555422 1111111 112356788999999998
Q ss_pred EEEeecCCCCCC-------CCCCCHHHHHHHHHHHHhcCCC-EEE
Q 015826 193 LKSFMCPSGIND-------FPMTNASHIKEGLSVLARYKRP-LLV 229 (399)
Q Consensus 193 ik~~~~~~~~~~-------~~~~~~~~l~~~~~~a~~~g~~-v~~ 229 (399)
+.++........ -+..+.+...+.++.|++.|+. +.+
T Consensus 176 ~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~ 220 (366)
T TIGR02351 176 VTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGI 220 (366)
T ss_pred EEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeece
Confidence 776542210000 0122556667788888888876 443
No 325
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=27.42 E-value=54 Score=25.50 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=11.1
Q ss_pred CccEEEEccEEEcCCCce
Q 015826 42 YNQYWLTSKRIVTPKGVI 59 (399)
Q Consensus 42 ~~~~li~n~~vv~~~~~~ 59 (399)
+.+-+-+|.+|++-.|++
T Consensus 49 ~~~~Lk~Gd~VvT~gGi~ 66 (106)
T PRK05585 49 MLSSLAKGDEVVTNGGII 66 (106)
T ss_pred HHHhcCCCCEEEECCCeE
Confidence 334455677777776653
No 326
>PLN02389 biotin synthase
Probab=27.29 E-value=5.9e+02 Score=24.78 Aligned_cols=110 Identities=11% Similarity=0.010 Sum_probs=60.9
Q ss_pred cCchHHHHHHHHcCCeeeeecCcC--CCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcE
Q 015826 115 WEGFPSGTKAAAAGGITTLIDMPL--NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLG 192 (399)
Q Consensus 115 ~e~~~~~~~~al~~GvTtv~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ 192 (399)
.+.+...++.+...|++.+.-... +........+.+.+.++..... .+.+. ...+ ....+.++++.++|++.
T Consensus 118 ~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~-~l~i~----~s~G-~l~~E~l~~LkeAGld~ 191 (379)
T PLN02389 118 KDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGM-GMEVC----CTLG-MLEKEQAAQLKEAGLTA 191 (379)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcC-CcEEE----ECCC-CCCHHHHHHHHHcCCCE
Confidence 345566677777889998753210 1111111234444444444422 12222 1111 22457788888999998
Q ss_pred EEEeecCCC--CCC-CCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 193 LKSFMCPSG--IND-FPMTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 193 ik~~~~~~~--~~~-~~~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
+-..+.... .+. .+..+-+...+.++.|++.|+.+..|
T Consensus 192 ~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg 232 (379)
T PLN02389 192 YNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSG 232 (379)
T ss_pred EEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEE
Confidence 755433110 000 01236777888999999999999887
No 327
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=27.15 E-value=5.2e+02 Score=24.16 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccc
Q 015826 299 SSSLDLLMEAKTNGDSITVETCPH 322 (399)
Q Consensus 299 ~~~l~~i~~ak~~G~~vt~e~~p~ 322 (399)
.+-+++++++.++|+++..-+.|-
T Consensus 169 ~~Ri~al~~l~eaGi~~~v~v~PI 192 (297)
T COG1533 169 EERLEALKELSEAGIPVGLFVAPI 192 (297)
T ss_pred HHHHHHHHHHHHCCCeEEEEEecc
Confidence 377999999999999999988884
No 328
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=27.14 E-value=2.2e+02 Score=24.07 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHcCCcEEEEe-ecCCCCC---------CCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 177 YNASALEALLNAGVLGLKSF-MCPSGIN---------DFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~-~~~~~~~---------~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
+..++++.+.+.|.+.+-+- ..+.+.. ....-+.+.|..++++|.++|+.|.+=..
T Consensus 21 ~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 34566777777777765432 1111110 11123557999999999999999988764
No 329
>PRK08508 biotin synthase; Provisional
Probab=26.84 E-value=5e+02 Score=23.85 Aligned_cols=112 Identities=13% Similarity=0.030 Sum_probs=0.0
Q ss_pred CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccC-ceeEEeeeeeeCCChhhHHHHHHHHHcCCcE
Q 015826 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPENAYNASALEALLNAGVLG 192 (399)
Q Consensus 114 ~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ 192 (399)
+.+.+...++.+...|++.+.-...+........+.+.+..+...... .+.+....+.. ..+.++++.++|++.
T Consensus 41 s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~-----~~e~l~~Lk~aGld~ 115 (279)
T PRK08508 41 DIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTA-----SVEQLKELKKAGIFS 115 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCC-----CHHHHHHHHHcCCCE
Q ss_pred EEEeecCCCC---CCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 193 LKSFMCPSGI---NDFPMTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 193 ik~~~~~~~~---~~~~~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
+....-.... .-.+..+.+...+.++.|++.|+.+..+
T Consensus 116 ~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg 156 (279)
T PRK08508 116 YNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSG 156 (279)
T ss_pred EcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecce
No 330
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=26.83 E-value=5.2e+02 Score=24.05 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=30.7
Q ss_pred HHHHHHHHH-cCCcEEEEeecC-CCCC-CCCC-CCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 179 ASALEALLN-AGVLGLKSFMCP-SGIN-DFPM-TNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 179 ~~~l~~l~~-~G~~~ik~~~~~-~~~~-~~~~-~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
.++.+++++ -|++.+-+.+.. +|.. .-|. .+-+.|+++-+ ..++|+..|-.
T Consensus 160 peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~---~v~vPLVlHGg 214 (288)
T TIGR00167 160 PEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQK---YVNLPLVLHGG 214 (288)
T ss_pred HHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHH---HhCCCEEEeCC
Confidence 466777775 488877664422 2211 1134 66677766643 45899999954
No 331
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=26.63 E-value=54 Score=24.25 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=18.3
Q ss_pred HHHHHhcccccccccccCCCCCccEEEEccEEEcCCCce
Q 015826 21 LFLLVFKDSAKLSHSECSLLPYNQYWLTSKRIVTPKGVI 59 (399)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~li~n~~vv~~~~~~ 59 (399)
++.+||.+.-++.-.++....|.+-+-.+.+|++..|..
T Consensus 13 ~~i~yf~~~rpqkK~~k~~~~m~~~L~~Gd~VvT~gGi~ 51 (84)
T TIGR00739 13 FLIFYFLIIRPQRKRRKAHKKLIESLKKGDKVLTIGGII 51 (84)
T ss_pred HHHHHHheechHHHHHHHHHHHHHhCCCCCEEEECCCeE
Confidence 444455544333222222223344455667777766654
No 332
>KOG4245 consensus Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=26.44 E-value=4.4e+02 Score=23.03 Aligned_cols=169 Identities=16% Similarity=0.163 Sum_probs=89.8
Q ss_pred hhHHHHHHHH-HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhc
Q 015826 177 YNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 255 (399)
Q Consensus 177 ~~~~~l~~l~-~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (399)
...+++++.+ +.|..++.+..-- .. ...+..++-.+...|.++.+.+.+|.-+...-..++.+ +..-
T Consensus 80 ~avee~~rcvk~lg~~g~eigshv---~e-~~ld~~d~~ply~~~e~l~~~lfvhpwdmhmwdgrl~k--------ywlp 147 (297)
T KOG4245|consen 80 LAVEEMERCVKELGFKGFEIGSHV---AE-KDLDAQDFFPLYAAAEELKCSLFVHPWDMHMWDGRLAK--------YWLP 147 (297)
T ss_pred HHHHHHHHHHHHcCCCceeecccc---cc-ccCchHHHhHHHHHHHhheeeEEecchhhcccccchHh--------hhhH
Confidence 3567888887 4688887663211 11 23577788889999999999999998654321211111 1112
Q ss_pred CCCCCChHHHHHHHHHHHH--HHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCEEEEccccccccccccCCC
Q 015826 256 YLKTRPPSWEEAAIRELLT--VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 333 (399)
Q Consensus 256 ~~~~~p~~~E~~~v~~~~~--~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~ 333 (399)
|+.+-|... +.++-.++. +... ++..++.+.|..-+ .-.|+---..|.++..+.|... ....+.
T Consensus 148 wlvgmpaet-a~aics~img~i~~~------fpklklcfahggga---~p~~~grishg~n~rpdlca~~----~~~~p~ 213 (297)
T KOG4245|consen 148 WLVGMPAET-AIAICSMIMGGIFEK------FPKLKLCFAHGGGA---FPFIRGRISHGFNMRPDLCAGD----CKMAPK 213 (297)
T ss_pred HHhCCchHH-HHHHHHHHHhhHHHh------CchheeeeecCCcc---cceeeeeeccCccCCcchhcCc----CCCChh
Confidence 234555432 223433332 1122 45778889997643 3444444456777777777642 111111
Q ss_pred -CCcceEEcCCCCChhhHHHHHHHHhcCCccEEeCCCCCCC
Q 015826 334 -GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV 373 (399)
Q Consensus 334 -~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i~sdh~p~~ 373 (399)
.+..+-...-.-++...+.|.+-+-... .++|||+ |+.
T Consensus 214 k~~g~~~tdalvhdp~alell~~tigkd~-iilgtdy-pfp 252 (297)
T KOG4245|consen 214 KLDGLFWTDALVHDPKALELLIDTIGKDH-IILGTDY-PFP 252 (297)
T ss_pred hhccchhhhhhhcCcHHHHHHHHhhccce-EEeccCC-CCc
Confidence 1112222222334555566666553333 3677876 443
No 333
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=26.31 E-value=4.8e+02 Score=23.39 Aligned_cols=96 Identities=14% Similarity=-0.024 Sum_probs=55.8
Q ss_pred hHHHHHHHHHcCCcEEEE-eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec--CChhhchhHHhhccCcCCchhhh
Q 015826 178 NASALEALLNAGVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA--EMEKGSERHVKLEDDTLDTRSYS 254 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~--~~~~~~~~~~~~~~~~~~~~~~~ 254 (399)
..++++++.+.|++.+.+ .|..+-+++ ..+.++.++.+- + +.++.+|. ++++.
T Consensus 27 l~~el~~l~~~g~d~lHiDVMDG~FVPN-itfGp~~i~~i~----~-~~~~DvHLMv~~P~~------------------ 82 (228)
T PRK08091 27 FNETLTTLSENQLRLLHFDIADGQFSPF-FTVGAIAIKQFP----T-HCFKDVHLMVRDQFE------------------ 82 (228)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCcCCc-cccCHHHHHHhC----C-CCCEEEEeccCCHHH------------------
Confidence 346788888889988754 343321111 145777777663 2 78999995 33321
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC-ChhHHHHHHHHHHHCCC--CEEEEcccc
Q 015826 255 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS-DASSSLDLLMEAKTNGD--SITVETCPH 322 (399)
Q Consensus 255 ~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s-~~~~~l~~i~~ak~~G~--~vt~e~~p~ 322 (399)
-+.. +++ .|+.....|.- +. ...+.++..|+.|. .+-.-.+|.
T Consensus 83 -------------~i~~---~~~--------aGad~It~H~Ea~~-~~~~~l~~Ik~~g~~~kaGlalnP~ 128 (228)
T PRK08091 83 -------------VAKA---CVA--------AGADIVTLQVEQTH-DLALTIEWLAKQKTTVLIGLCLCPE 128 (228)
T ss_pred -------------HHHH---HHH--------hCCCEEEEcccCcc-cHHHHHHHHHHCCCCceEEEEECCC
Confidence 1122 222 15556677765 23 44567777788887 666666663
No 334
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=26.25 E-value=5.8e+02 Score=24.37 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 231 (399)
.+.+++..+.|+..+.+.. | ..+..+.+.+.++++..++..--+.+|+
T Consensus 85 ~~~a~~~~~~G~~~v~l~~---G--~~p~~~~~~~~e~i~~Ik~~~p~i~i~~ 132 (351)
T TIGR03700 85 VARVKEAYAPGATEVHIVG---G--LHPNLPFEWYLDMIRTLKEAYPDLHVKA 132 (351)
T ss_pred HHHHHHHHHCCCcEEEEec---C--CCCCCCHHHHHHHHHHHHHHCCCceEEe
Confidence 3444555556766554431 1 1123455677777777776643355554
No 335
>PRK08123 histidinol-phosphatase; Reviewed
Probab=26.14 E-value=76 Score=29.15 Aligned_cols=35 Identities=17% Similarity=0.053 Sum_probs=25.1
Q ss_pred eeecccccCCCCCCCcCchHHHHHHHHcCCeeeee
Q 015826 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI 134 (399)
Q Consensus 100 lID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv~ 134 (399)
.+|.|+|.....-...+.+..-.++|.+.|++.+.
T Consensus 3 ~~D~H~HT~~s~h~~~~~~e~~v~~Ai~~Gl~~i~ 37 (270)
T PRK08123 3 KRDGHTHTPFCPHGSKDDLEAYIERAIELGFTEIT 37 (270)
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHcCCcEEE
Confidence 47999998654322234567778889999999975
No 336
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=26.12 E-value=5.2e+02 Score=23.77 Aligned_cols=112 Identities=15% Similarity=0.117 Sum_probs=58.7
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec--CChhhchhHHhhccCcCCchhhhc--
Q 015826 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA--EMEKGSERHVKLEDDTLDTRSYST-- 255 (399)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~--~~~~~~~~~~~~~~~~~~~~~~~~-- 255 (399)
+-++++.+.|++++-+ . -+..|+-..+.+.++++|+-...=+ ..++...+.+.+. ..+..++..
T Consensus 113 ~F~~~~~~~GvdGliv-------p---DLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~--a~GFiY~vs~~ 180 (265)
T COG0159 113 KFLRRAKEAGVDGLLV-------P---DLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEA--ASGFIYYVSRM 180 (265)
T ss_pred HHHHHHHHcCCCEEEe-------C---CCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh--CCCcEEEEecc
Confidence 3467777899999865 2 2455666677788889987655443 3333222222221 112222211
Q ss_pred CCCC-CChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEc-CCChhHHHHHHHHHHHCCC
Q 015826 256 YLKT-RPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH-LSDASSSLDLLMEAKTNGD 313 (399)
Q Consensus 256 ~~~~-~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H-~s~~~~~l~~i~~ak~~G~ 313 (399)
+-.+ +.+..+ .+.+.+.-.++. ++.|+-+.- +|++ +.++.+.++ +.|+
T Consensus 181 GvTG~~~~~~~--~~~~~v~~vr~~------~~~Pv~vGFGIs~~-e~~~~v~~~-ADGV 230 (265)
T COG0159 181 GVTGARNPVSA--DVKELVKRVRKY------TDVPVLVGFGISSP-EQAAQVAEA-ADGV 230 (265)
T ss_pred cccCCCcccch--hHHHHHHHHHHh------cCCCeEEecCcCCH-HHHHHHHHh-CCeE
Confidence 1111 111111 255666666653 477766554 5676 667777666 5554
No 337
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.00 E-value=5e+02 Score=23.56 Aligned_cols=52 Identities=10% Similarity=-0.187 Sum_probs=34.8
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCC-CCCCCCHHHHHHHHHHHHhcCCCEEE
Q 015826 178 NASALEALLNAGVLGLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLV 229 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~ 229 (399)
..+.++.+.+.|..++.+........ .....+++.+.++.+.++++|+.+..
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 45667777789999988754321100 00123678899999999999998754
No 338
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=25.99 E-value=90 Score=30.26 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHhcCCCEEEec-CChhhchhHH
Q 015826 209 NASHIKEGLSVLARYKRPLLVHA-EMEKGSERHV 241 (399)
Q Consensus 209 ~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~~~~~ 241 (399)
..+.++++++.|+++|+++.+|. +..+.+.+..
T Consensus 207 ~~e~i~~~v~~A~~~G~~v~sH~~~~~e~i~~a~ 240 (376)
T TIGR02318 207 GLANRSEIAALARARGIPLASHDDDTPEHVAEAH 240 (376)
T ss_pred cHHHHHHHHHHHHHCCCeEEEecCCCHHHHHHHH
Confidence 57899999999999999999999 6666554433
No 339
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=25.91 E-value=86 Score=29.83 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHhcCC-CEEEecCChh
Q 015826 207 MTNASHIKEGLSVLARYKR-PLLVHAEMEK 235 (399)
Q Consensus 207 ~~~~~~l~~~~~~a~~~g~-~v~~H~~~~~ 235 (399)
+.+.+.|+++++..+.+++ .++.|..|..
T Consensus 14 f~~~~~lk~~id~ma~~KlN~lhlHLtD~~ 43 (329)
T cd06568 14 FFTVAEVKRYIDLLALYKLNVLHLHLTDDQ 43 (329)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEEeecCC
Confidence 4688999999999998887 4789987654
No 340
>PRK06852 aldolase; Validated
Probab=25.60 E-value=96 Score=29.12 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=32.1
Q ss_pred HHHHHHHHcC------CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015826 180 SALEALLNAG------VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (399)
Q Consensus 180 ~~l~~l~~~G------~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 231 (399)
..+++.++.| ++++++.+.... ..-...-+.+.++.++|+++|+|+.+.+
T Consensus 119 ~sVeeAvrlG~~~~~~AdAV~v~v~~Gs--~~E~~ml~~l~~v~~ea~~~GlPll~~~ 174 (304)
T PRK06852 119 LDVEQVVEFKENSGLNILGVGYTIYLGS--EYESEMLSEAAQIIYEAHKHGLIAVLWI 174 (304)
T ss_pred ecHHHHHhcCCccCCCceEEEEEEecCC--HHHHHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 4477788877 667766544321 1101133467788899999999998754
No 341
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=25.58 E-value=4.9e+02 Score=23.25 Aligned_cols=122 Identities=17% Similarity=0.208 Sum_probs=64.8
Q ss_pred ChhhHHHHHHHHH-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhh
Q 015826 175 NAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 253 (399)
Q Consensus 175 ~~~~~~~l~~l~~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 253 (399)
+.+....+.+..+ .|+..+-+ .++++.++.+. ..-++|+++-+-+++..-..++.+-.-.....|
T Consensus 25 d~~~V~~i~~AA~~ggAt~vDI-----------Aadp~LV~~~~---~~s~lPICVSaVep~~f~~aV~AGAdliEIGNf 90 (242)
T PF04481_consen 25 DAESVAAIVKAAEIGGATFVDI-----------AADPELVKLAK---SLSNLPICVSAVEPELFVAAVKAGADLIEIGNF 90 (242)
T ss_pred CHHHHHHHHHHHHccCCceEEe-----------cCCHHHHHHHH---HhCCCCeEeecCCHHHHHHHHHhCCCEEEecch
Confidence 3334444544444 45555543 35666665443 235899999988877655555543211112222
Q ss_pred hc-CCCCCChHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChhHHHHHHHHHHHCCCCE
Q 015826 254 ST-YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSI 315 (399)
Q Consensus 254 ~~-~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~l~~i~~ak~~G~~v 315 (399)
.. |-.+|-- ...+++.+.++++.+-|..-.-|.+-|+-..++-+++..+..+.|+++
T Consensus 91 DsFY~qGr~f-----~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDi 148 (242)
T PF04481_consen 91 DSFYAQGRRF-----SAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADI 148 (242)
T ss_pred HHHHhcCCee-----cHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcE
Confidence 11 1122221 224455666665444454444566777765446677777777777764
No 342
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=25.34 E-value=5.6e+02 Score=23.86 Aligned_cols=109 Identities=17% Similarity=0.259 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCeeeee-cCcCCCCCCCCcHHHHHHHHHHHhccC-ce--eEEeeeeeeCC----C----hhhHHHHHHHH
Q 015826 119 PSGTKAAAAGGITTLI-DMPLNSDPSTISTETLKLKVDAAEKRI-YV--DVGFWGGLVPE----N----AYNASALEALL 186 (399)
Q Consensus 119 ~~~~~~al~~GvTtv~-d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~----~----~~~~~~l~~l~ 186 (399)
....+.+++.|+|+|. |.. ..|...+.+.-++..+.+...+ .+ .++..++..++ . ....++..+.+
T Consensus 87 ~e~i~~ai~~GFtSVM~DgS--~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv 164 (286)
T PRK12738 87 LDDIRRKVHAGVRSAMIDGS--HFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFV 164 (286)
T ss_pred HHHHHHHHHcCCCeEeecCC--CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHH
Confidence 3467788999999974 332 2332222223333333332211 11 11211111111 0 11345666666
Q ss_pred H-cCCcEEEEeecC-CCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 187 N-AGVLGLKSFMCP-SGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 187 ~-~G~~~ik~~~~~-~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
+ -|++.+-+.+.. +|. ...|..+-+.|+++-+ ..++|+..|-.
T Consensus 165 ~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~---~~~vPLVLHGg 210 (286)
T PRK12738 165 ELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIRE---VVDVPLVLHGA 210 (286)
T ss_pred HHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHH---HhCCCEEEeCC
Confidence 5 488877664422 221 1124566667766644 45899999953
No 343
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=25.17 E-value=3.7e+02 Score=24.94 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE----eCCCCCCC
Q 015826 300 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML----SSDHSPTV 373 (399)
Q Consensus 300 ~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id~i----~sdh~p~~ 373 (399)
.+-++++.|+..|+.|-+|+ .++-..++....... .-.+.++++-+.+.+.- -+|++ ||=|-.+.
T Consensus 114 ~T~~vv~~Ah~~gv~VEaEl--G~vgg~e~~~~~~~~----~~~~T~peea~~Fv~~T---gvD~LAvaiGt~HG~yk 182 (282)
T TIGR01858 114 LVKEVVDFCHRQDCSVEAEL--GRLGGVEDDLSVDEE----DALYTDPQEAKEFVEAT---GVDSLAVAIGTAHGLYK 182 (282)
T ss_pred HHHHHHHHHHHcCCeEEEEE--EecCCccCCCccccc----hhccCCHHHHHHHHHHH---CcCEEecccCccccCcC
Confidence 45566677778887666665 445433322111110 12255666666665543 35654 45676554
No 344
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=25.14 E-value=1.4e+02 Score=27.43 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHH-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 176 AYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 176 ~~~~~~l~~l~~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
.+.++.-.++++ .|++.+|+-- . .+....++...+.|+||+.|.-
T Consensus 94 e~av~nA~rl~ke~GadaVKlEG-------g-----~~~~~~i~~l~~~GIPV~gHiG 139 (261)
T PF02548_consen 94 EQAVRNAGRLMKEAGADAVKLEG-------G-----AEIAETIKALVDAGIPVMGHIG 139 (261)
T ss_dssp HHHHHHHHHHHHTTT-SEEEEEB-------S-----GGGHHHHHHHHHTT--EEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEecc-------c-----hhHHHHHHHHHHCCCcEEEEec
Confidence 344555666776 8999999831 1 1333445555668999999973
No 345
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=25.12 E-value=4.3e+02 Score=24.02 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhcCCCE
Q 015826 211 SHIKEGLSVLARYKRPL 227 (399)
Q Consensus 211 ~~l~~~~~~a~~~g~~v 227 (399)
+.++++++.|+++|.+.
T Consensus 85 ~~~~~~i~~A~~lG~~~ 101 (279)
T cd00019 85 ERLKDEIERCEELGIRL 101 (279)
T ss_pred HHHHHHHHHHHHcCCCE
Confidence 45666666677766653
No 346
>PRK09206 pyruvate kinase; Provisional
Probab=24.91 E-value=7.2e+02 Score=25.02 Aligned_cols=99 Identities=9% Similarity=0.040 Sum_probs=49.2
Q ss_pred HHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCC
Q 015826 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 201 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~ 201 (399)
.+-++..|+.-+..-. ..+.+.+....+.......-+..... --++.+.++.+++.++. ++++-+ +...
T Consensus 178 i~f~~~~~vD~ia~SF------Vr~~~Dv~~~r~~l~~~~~~~~~iia--KIEt~eav~nldeIl~~-~DgImV--aRGD 246 (470)
T PRK09206 178 LIFGCEQGVDFVAASF------IRKRSDVLEIREHLKAHGGENIQIIS--KIENQEGLNNFDEILEA-SDGIMV--ARGD 246 (470)
T ss_pred HHHHHHcCCCEEEEcC------CCCHHHHHHHHHHHHHcCCCCceEEE--EECCHHHHHhHHHHHHh-CCEEEE--Ccch
Confidence 4566788887765322 22344444443333221100111111 11344556777777765 665533 2210
Q ss_pred CC-CCC-CCCHHHHHHHHHHHHhcCCCEEEec
Q 015826 202 IN-DFP-MTNASHIKEGLSVLARYKRPLLVHA 231 (399)
Q Consensus 202 ~~-~~~-~~~~~~l~~~~~~a~~~g~~v~~H~ 231 (399)
.. ..+ .--+...+++++.|+++|+|+.+=.
T Consensus 247 Lgvelg~e~vp~~qk~ii~~~~~~gkpvI~AT 278 (470)
T PRK09206 247 LGVEIPVEEVIFAQKMMIEKCNRARKVVITAT 278 (470)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 00 001 0123466788889999999998743
No 347
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.87 E-value=4.9e+02 Score=23.48 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCCEEEecC
Q 015826 213 IKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 213 l~~~~~~a~~~g~~v~~H~~ 232 (399)
++++.+.|+++|+.+.+|..
T Consensus 131 l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 131 LSELCEYAENIGMDLILEPL 150 (275)
T ss_pred HHHHHHHHHHcCCEEEEecC
Confidence 56667777777777776653
No 348
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=24.83 E-value=5.7e+02 Score=23.83 Aligned_cols=104 Identities=10% Similarity=0.069 Sum_probs=54.9
Q ss_pred CchHHHHHHHHcCCeeeeecCcCCCCCC------CCcHHHHHHHHHHHhccCceeEEeeeeeeCCCh---hhHHHHHHHH
Q 015826 116 EGFPSGTKAAAAGGITTLIDMPLNSDPS------TISTETLKLKVDAAEKRIYVDVGFWGGLVPENA---YNASALEALL 186 (399)
Q Consensus 116 e~~~~~~~~al~~GvTtv~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~ 186 (399)
..+......+...||+.++....+ .|. ....+.++ .++.. ....+.++.+....+... ..++.+++-+
T Consensus 97 ~~l~~~L~~~~~~GI~niLaLrGD-~p~~~~~~~~~a~dLv~-li~~~-~~~~i~va~yPeghp~~~~~~~dl~~Lk~K~ 173 (296)
T PRK09432 97 DELRTIAKDYWNNGIRHIVALRGD-LPPGSGKPEMYASDLVT-LLKSV-ADFDISVAAYPEVHPEAKSAQADLINLKRKV 173 (296)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCC-CCCCCCCCCcCHHHHHH-HHHHh-CCCccceeeCCCCCCCCCCHHHHHHHHHHHH
Confidence 344555566788999999876421 111 11112222 33322 111222333322222211 1234555556
Q ss_pred HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015826 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (399)
Q Consensus 187 ~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 231 (399)
++|+..+-+ .+.++.+.+.+.++.+++.|+.+-+++
T Consensus 174 ~aGA~~~iT---------Q~~Fd~~~~~~f~~~~~~~Gi~vPIi~ 209 (296)
T PRK09432 174 DAGANRAIT---------QFFFDVESYLRFRDRCVSAGIDVEIVP 209 (296)
T ss_pred HcCCCeeec---------ccccchHHHHHHHHHHHHcCCCCCEEe
Confidence 789975532 345788999999999999885444443
No 349
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=24.65 E-value=3.9e+02 Score=24.87 Aligned_cols=78 Identities=21% Similarity=0.169 Sum_probs=39.7
Q ss_pred CceEEEEcCCCh---hHHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhHHHHHHHHhcCCcc
Q 015826 287 GAHLHIVHLSDA---SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID 363 (399)
Q Consensus 287 g~~vhi~H~s~~---~~~l~~i~~ak~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~id 363 (399)
.+=+.-+|++-. ..+-++++.|+..|+.|-+|+ .++-..++.....+. .--+.++++-+.+.+.- | +|
T Consensus 100 SVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaEl--G~vgg~e~~~~~~~~----~~~~T~peea~~Fv~~T--g-vD 170 (284)
T PRK09195 100 SVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAEL--GRLGGQEDDLQVDEA----DALYTDPAQAREFVEAT--G-ID 170 (284)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEE--ecccCcccCcccccc----cccCCCHHHHHHHHHHH--C-cC
Confidence 344444555432 245667777788887776665 345433322111111 11255666666666543 3 56
Q ss_pred EE----eCCCCCCC
Q 015826 364 ML----SSDHSPTV 373 (399)
Q Consensus 364 ~i----~sdh~p~~ 373 (399)
++ ||=|-.+.
T Consensus 171 ~LAvaiGt~HG~y~ 184 (284)
T PRK09195 171 SLAVAIGTAHGMYK 184 (284)
T ss_pred EEeeccCccccccC
Confidence 44 56676654
No 350
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=24.62 E-value=4.3e+02 Score=25.25 Aligned_cols=115 Identities=14% Similarity=0.012 Sum_probs=60.8
Q ss_pred CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc-CceeEEeeeee-----eC-CChhhHHHHHHHH
Q 015826 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGL-----VP-ENAYNASALEALL 186 (399)
Q Consensus 114 ~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~-~~~~~~~~l~~l~ 186 (399)
+.+.+...++.+...|++.+.... +..|. ...+.+.+..+..... ..+.+...... .. ......+.++++.
T Consensus 80 ~~eeI~~~a~~~~~~G~~~v~l~~-G~~p~-~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~Lk 157 (351)
T TIGR03700 80 SLEEIVARVKEAYAPGATEVHIVG-GLHPN-LPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELK 157 (351)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEec-CCCCC-CCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345566667777889999987664 33443 2344555555555432 22333221100 00 0111235588888
Q ss_pred HcCCcEEEEeecCCCC----C-CCC-CCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 187 NAGVLGLKSFMCPSGI----N-DFP-MTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 187 ~~G~~~ik~~~~~~~~----~-~~~-~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
++|++.+-..-..... . -.+ ..+.+...++++.|++.|+++..+
T Consensus 158 eAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg 207 (351)
T TIGR03700 158 EAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNAT 207 (351)
T ss_pred HcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceE
Confidence 8888654210000000 0 001 245677778999999999988665
No 351
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=24.21 E-value=5.1e+02 Score=23.02 Aligned_cols=51 Identities=18% Similarity=0.049 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCcEEEE-eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015826 179 ASALEALLNAGVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
.++++++.+.|++.+.+ .|...-+++. ....+.++++.+.. .++++.+|..
T Consensus 22 ~~~~~~l~~~~~~~~H~DimDg~fvpn~-~~G~~~v~~lr~~~--~~~~lDvHLm 73 (228)
T PTZ00170 22 ADEAQDVLSGGADWLHVDVMDGHFVPNL-SFGPPVVKSLRKHL--PNTFLDCHLM 73 (228)
T ss_pred HHHHHHHHHcCCCEEEEecccCccCCCc-CcCHHHHHHHHhcC--CCCCEEEEEC
Confidence 45677777777777654 2332211111 23455554443211 1566777753
No 352
>PLN02444 HMP-P synthase
Probab=24.15 E-value=8e+02 Score=25.28 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=13.8
Q ss_pred HHHHHcCCeeeeecCc
Q 015826 122 TKAAAAGGITTLIDMP 137 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~ 137 (399)
.+.+.+.|--|+.|+.
T Consensus 243 ~~~A~~~GADTvMDLS 258 (642)
T PLN02444 243 LQWATMWGADTVMDLS 258 (642)
T ss_pred HHHHHHcCCCeEeecc
Confidence 5678899999999986
No 353
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=24.11 E-value=5.5e+02 Score=23.37 Aligned_cols=103 Identities=18% Similarity=0.066 Sum_probs=61.1
Q ss_pred hHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEee
Q 015826 118 FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFM 197 (399)
Q Consensus 118 ~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~ 197 (399)
....++.+..+|...+..+.. ..-...+.+.+....+... -+.+. -. +.-. .-++.+....|++.+-+..
T Consensus 72 ~~~~A~~~~~~GA~aisvlte-~~~f~g~~~~l~~v~~~v~-iPvl~---kd-fi~~----~~qi~~a~~~GAD~VlLi~ 141 (260)
T PRK00278 72 PVEIAKAYEAGGAACLSVLTD-ERFFQGSLEYLRAARAAVS-LPVLR---KD-FIID----PYQIYEARAAGADAILLIV 141 (260)
T ss_pred HHHHHHHHHhCCCeEEEEecc-cccCCCCHHHHHHHHHhcC-CCEEe---ee-ecCC----HHHHHHHHHcCCCEEEEEe
Confidence 345667778888887754431 1111124555555444321 11111 00 1111 2268888889999887642
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhch
Q 015826 198 CPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 238 (399)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 238 (399)
. ..+.+.++++++.++++|+.+.+-+.+.++..
T Consensus 142 ~--------~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~ 174 (260)
T PRK00278 142 A--------ALDDEQLKELLDYAHSLGLDVLVEVHDEEELE 174 (260)
T ss_pred c--------cCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence 1 24668999999999999999887776665543
No 354
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=24.04 E-value=5.6e+02 Score=23.44 Aligned_cols=51 Identities=24% Similarity=0.149 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cC-CCEEEecCChh
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YK-RPLLVHAEMEK 235 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g-~~v~~H~~~~~ 235 (399)
.+.++++.+.|+..|.+. +.....+++.+..+++..++ .+ +++.+|++|..
T Consensus 154 ~~~~~~~~~~g~~~i~l~------DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~ 206 (273)
T cd07941 154 LATLKAAAEAGADWLVLC------DTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDS 206 (273)
T ss_pred HHHHHHHHhCCCCEEEEe------cCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCC
Confidence 345566667898876532 12235788899988888876 45 88999998754
No 355
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=23.93 E-value=5.5e+02 Score=23.31 Aligned_cols=52 Identities=4% Similarity=-0.193 Sum_probs=33.9
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCC-CCCCCCHHHHHHHHHHHHhcCCCEEE
Q 015826 178 NASALEALLNAGVLGLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLV 229 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~ 229 (399)
..+.++.+.+.|..++-+.+...... .....+.+++.++.+..+++|+.+..
T Consensus 18 ~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 18 WLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPS 70 (279)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCcee
Confidence 34566777778998887754332100 01123678888888899999998753
No 356
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=23.81 E-value=2.2e+02 Score=29.04 Aligned_cols=52 Identities=21% Similarity=0.151 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-CCCEEEecCChhh
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEMEKG 236 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~~~~ 236 (399)
.+.++.+.+.|+..+.+- +......++++.++++..++. ++++.+|++|...
T Consensus 161 ~~~~~~~~~~Gad~i~l~------DTvG~~~P~~v~~li~~l~~~~~v~i~~H~HND~G 213 (524)
T PRK12344 161 LATLKAAAEAGADWVVLC------DTNGGTLPHEVAEIVAEVRAAPGVPLGIHAHNDSG 213 (524)
T ss_pred HHHHHHHHhCCCCeEEEc------cCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 344556667899876532 112357888888888877664 8999999988753
No 357
>PRK00915 2-isopropylmalate synthase; Validated
Probab=23.80 E-value=5.8e+02 Score=25.98 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-C----CCEEEecCChhh
Q 015826 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-K----RPLLVHAEMEKG 236 (399)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g----~~v~~H~~~~~~ 236 (399)
.+.++.+.+.|+..|.+- . ......++++.++++..++. . +++.+|++|...
T Consensus 152 ~~~~~~~~~~Ga~~i~l~--D----TvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~G 208 (513)
T PRK00915 152 CRVVEAAIDAGATTINIP--D----TVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLG 208 (513)
T ss_pred HHHHHHHHHcCCCEEEEc--c----CCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCC
Confidence 445556667898876542 1 22357888888888887653 3 789999988753
No 358
>PLN02623 pyruvate kinase
Probab=23.70 E-value=8.4e+02 Score=25.32 Aligned_cols=98 Identities=11% Similarity=0.082 Sum_probs=51.6
Q ss_pred HHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeCCChhhHHHHHHHHHcCCcEEEEeecCCC
Q 015826 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 201 (399)
Q Consensus 122 ~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~ 201 (399)
.+-++..|+..+..-. ..+.+.+.+..+...... -+..... .-++.+.++.++++++ |++++-+ ++..
T Consensus 284 i~f~~~~~vD~ialSF------Vr~a~DV~~~r~~l~~~~-~~~~iia--kIEt~eaVeNldeIl~-g~DgImI--grgD 351 (581)
T PLN02623 284 IKFGVENKVDFYAVSF------VKDAQVVHELKDYLKSCN-ADIHVIV--KIESADSIPNLHSIIT-ASDGAMV--ARGD 351 (581)
T ss_pred HHHHHHcCCCEEEECC------CCCHHHHHHHHHHHHHcC-CcceEEE--EECCHHHHHhHHHHHH-hCCEEEE--Ccch
Confidence 4566788887764322 223444444433332111 0111111 1134456777888877 8887744 2210
Q ss_pred CC-CCCC-CCHHHHHHHHHHHHhcCCCEEEec
Q 015826 202 IN-DFPM-TNASHIKEGLSVLARYKRPLLVHA 231 (399)
Q Consensus 202 ~~-~~~~-~~~~~l~~~~~~a~~~g~~v~~H~ 231 (399)
.. ..+. --....+++++.|+++|+++.+..
T Consensus 352 Lgvelg~~~v~~~qk~Ii~~~~~~gKpvivaT 383 (581)
T PLN02623 352 LGAELPIEEVPLLQEEIIRRCRSMGKPVIVAT 383 (581)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHhCCCEEEEC
Confidence 00 0010 113467788899999999999655
No 359
>cd01733 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm10 is an SmD1-like protein which is thought to bind U7 snRNA along with LSm11 and five other Sm subunits to form a 7-member ring structure. LSm10 and the U7 snRNP of which it is a part are thought to play an important role in histone mRNA 3' processing.
Probab=23.68 E-value=1.9e+02 Score=20.96 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=23.3
Q ss_pred CCccEEEEccEEEcCCCce--eeEEEEECCEEEEe
Q 015826 41 PYNQYWLTSKRIVTPKGVI--SGAVEIKEGNIISI 73 (399)
Q Consensus 41 ~~~~~li~n~~vv~~~~~~--~~~V~I~dG~I~~I 73 (399)
+.|.+.+.|+.++++++.. -+.|.|++..|..|
T Consensus 41 ~~MNl~L~~~~~~~~~~~~~~~~~v~IRG~nI~yI 75 (78)
T cd01733 41 AFMNIRLAKVTIIDRNGKQVQVEEIMVTGRNIRYV 75 (78)
T ss_pred CCceeEEEEEEEEcCCCceeECCcEEEECCEEEEE
Confidence 3567778888877766532 36788888888776
No 360
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=23.46 E-value=2.9e+02 Score=25.06 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhH
Q 015826 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 240 (399)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~ 240 (399)
.++.+....|++.+-+.. ...+++.+..+++.|+++|+-+.+-+++..+....
T Consensus 115 ~QI~ea~~~GADavLLI~--------~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a 167 (247)
T PRK13957 115 IQIREARAFGASAILLIV--------RILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLA 167 (247)
T ss_pred HHHHHHHHcCCCEEEeEH--------hhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHH
Confidence 457777778999885432 24688899999999999999988887776655433
No 361
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=22.81 E-value=6.3e+02 Score=23.54 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=6.3
Q ss_pred hHHHHHHHHhcCC
Q 015826 349 NKEKLWEALMDGH 361 (399)
Q Consensus 349 ~~~~l~~~l~~G~ 361 (399)
.-..+|++.++|.
T Consensus 219 ~~~~l~~~~~~gd 231 (303)
T PRK03620 219 IALAFYRALRAGD 231 (303)
T ss_pred HHHHHHHHHHCCC
Confidence 3344555555553
No 362
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=22.68 E-value=5.1e+02 Score=22.50 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=53.7
Q ss_pred HHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhccCceeEEeeeeeeC---CCh----hhHHHHHHHHHcCCcE
Q 015826 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP---ENA----YNASALEALLNAGVLG 192 (399)
Q Consensus 120 ~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~l~~l~~~G~~~ 192 (399)
..++++..+|-..++.- +.+.++...+. +++..-+-+-. +.+ -..++++++++.|++-
T Consensus 3 ~mA~Aa~~gGA~giR~~---------~~~dI~aik~~------v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadI 67 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRAN---------GVEDIRAIKKA------VDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADI 67 (192)
T ss_dssp HHHHHHHHCT-SEEEEE---------SHHHHHHHHTT------B-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SE
T ss_pred HHHHHHHHCCceEEEcC---------CHHHHHHHHHh------cCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCE
Confidence 34677888998888733 24455443322 12222111111 110 1468899999999997
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhch
Q 015826 193 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 238 (399)
Q Consensus 193 ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 238 (399)
+-+-.+.. ..| +.+.++++..++.+..++.-+.+.++..
T Consensus 68 IAlDaT~R---~Rp----~~l~~li~~i~~~~~l~MADist~ee~~ 106 (192)
T PF04131_consen 68 IALDATDR---PRP----ETLEELIREIKEKYQLVMADISTLEEAI 106 (192)
T ss_dssp EEEE-SSS---S-S----S-HHHHHHHHHHCTSEEEEE-SSHHHHH
T ss_pred EEEecCCC---CCC----cCHHHHHHHHHHhCcEEeeecCCHHHHH
Confidence 76533221 112 6788888999998888888888766543
No 363
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=22.56 E-value=1.8e+02 Score=27.20 Aligned_cols=76 Identities=24% Similarity=0.231 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhcCC-CEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCC
Q 015826 207 MTNASHIKEGLSVLARYKR-PLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 285 (399)
Q Consensus 207 ~~~~~~l~~~~~~a~~~g~-~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~ 285 (399)
+.+.+.|+++++....+++ .++.|..|.. .+..-....|...+.
T Consensus 12 ~~~~~~lk~~id~ma~~K~N~lhlHl~D~~----------------~~~le~~~~p~l~~~------------------- 56 (303)
T cd02742 12 FLSVESIKRTIDVLARYKINTFHWHLTDDQ----------------AWRIESKKFPELAEK------------------- 56 (303)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEeeecCC----------------CceEeeCccchhhhh-------------------
Q ss_pred CC----ceEEEEcCCChhHHHHHHHHHHHCCCCEEEEc
Q 015826 286 EG----AHLHIVHLSDASSSLDLLMEAKTNGDSITVET 319 (399)
Q Consensus 286 ~g----~~vhi~H~s~~~~~l~~i~~ak~~G~~vt~e~ 319 (399)
| ..-.-...|.. +--++++.|+++|+.|..|+
T Consensus 57 -g~~~~~~~~~~~yT~~-di~elv~yA~~rgI~viPEi 92 (303)
T cd02742 57 -GGQINPRSPGGFYTYA-QLKDIIEYAAARGIEVIPEI 92 (303)
T ss_pred -cccccCCCCCCeECHH-HHHHHHHHHHHcCCEEEEec
No 364
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=22.48 E-value=96 Score=19.16 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=12.9
Q ss_pred eEEEEECCEEEEeccC
Q 015826 61 GAVEIKEGNIISIVSE 76 (399)
Q Consensus 61 ~~V~I~dG~I~~Ig~~ 76 (399)
-.|.|.||+|+.|...
T Consensus 18 V~iiiqdG~vvQIe~~ 33 (38)
T PF10055_consen 18 VTIIIQDGRVVQIEKT 33 (38)
T ss_pred EEEEEECCEEEEEEhh
Confidence 4578899999999764
No 365
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.46 E-value=5.4e+02 Score=22.64 Aligned_cols=40 Identities=13% Similarity=0.025 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 015826 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229 (399)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 229 (399)
..+....+.|+.+|-+. -..+|+-..+-++++++|+-+..
T Consensus 114 ~~iq~ak~aGanGfiiv----------DlPpEEa~~~Rne~~k~gislvp 153 (268)
T KOG4175|consen 114 NYIQVAKNAGANGFIIV----------DLPPEEAETLRNEARKHGISLVP 153 (268)
T ss_pred HHHHHHHhcCCCceEec----------cCChHHHHHHHHHHHhcCceEEE
Confidence 34555566787776541 24567777777888888765543
No 366
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=22.42 E-value=4.9e+02 Score=24.15 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=40.0
Q ss_pred eeeeeCCChhhHHHHHHHHHcCCcEEE--EeecCCCCCCC---CCCCHHHHHHHHHHHHhcCCC
Q 015826 168 WGGLVPENAYNASALEALLNAGVLGLK--SFMCPSGINDF---PMTNASHIKEGLSVLARYKRP 226 (399)
Q Consensus 168 ~~~~~~~~~~~~~~l~~l~~~G~~~ik--~~~~~~~~~~~---~~~~~~~l~~~~~~a~~~g~~ 226 (399)
..|+.....+..+.+++|.+.|++-+. -|+.++. .+. .+.++++++..-+.|.+.|..
T Consensus 220 MlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS~-~HlpV~ryv~PeeF~~~~~~a~~~GF~ 282 (306)
T COG0320 220 MVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSR-KHLPVQRYVTPEEFDELEEVAEEMGFL 282 (306)
T ss_pred eeecCCcHHHHHHHHHHHHHcCCCEEEeccccCCcc-ccCCceeccCHHHHHHHHHHHHHccch
Confidence 334444445667888888899998654 4565542 122 267999999999999998864
No 367
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=22.31 E-value=3.4e+02 Score=25.46 Aligned_cols=85 Identities=22% Similarity=0.245 Sum_probs=48.5
Q ss_pred CceEEEEcCCChhHHHHHHHHH-HHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhhH--HHHHHH-------
Q 015826 287 GAHLHIVHLSDASSSLDLLMEA-KTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANK--EKLWEA------- 356 (399)
Q Consensus 287 g~~vhi~H~s~~~~~l~~i~~a-k~~G~~vt~e~~p~~L~~~~~~~~~~~~~~~~~Pplr~~~~~--~~l~~~------- 356 (399)
...++.+-++. .+++.-++- +.+++.-+ ++....+..+.+. .++ ...+|||++...+. ..-|+.
T Consensus 182 ~~~vtmvDvn~--~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v~~--kfd-~IisNPPfh~G~~v~~~~~~~~i~~A~~~ 255 (300)
T COG2813 182 QAKLTLVDVNA--RAVESARKNLAANGVENT-EVWASNLYEPVEG--KFD-LIISNPPFHAGKAVVHSLAQEIIAAAARH 255 (300)
T ss_pred CCeEEEEecCH--HHHHHHHHhHHHcCCCcc-EEEEecccccccc--ccc-EEEeCCCccCCcchhHHHHHHHHHHHHHh
Confidence 56788888776 567766653 34555544 4444333322222 233 67899999954322 112222
Q ss_pred H-hcCCccEEeCCCCCCCcccc
Q 015826 357 L-MDGHIDMLSSDHSPTVPELK 377 (399)
Q Consensus 357 l-~~G~id~i~sdh~p~~~~~k 377 (399)
| ..|.+-+|+-.|-|+..-.+
T Consensus 256 L~~gGeL~iVan~~l~y~~~L~ 277 (300)
T COG2813 256 LKPGGELWIVANRHLPYEKKLK 277 (300)
T ss_pred hccCCEEEEEEcCCCChHHHHH
Confidence 2 24788888887777754433
No 368
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=22.13 E-value=86 Score=28.54 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHh
Q 015826 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK 242 (399)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~ 242 (399)
-++.+....|++.+-+.+ ..+++++++++++.|+++|+-+.+-+++.++....+.
T Consensus 120 yQI~~Ar~~GADavLLI~--------~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~ 174 (254)
T COG0134 120 YQIYEARAAGADAVLLIV--------AALDDEQLEELVDRAHELGMEVLVEVHNEEELERALK 174 (254)
T ss_pred HHHHHHHHcCcccHHHHH--------HhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHh
Confidence 356666667887653322 1478899999999999999999888888777655544
No 369
>PRK15452 putative protease; Provisional
Probab=21.81 E-value=8.1e+02 Score=24.44 Aligned_cols=53 Identities=8% Similarity=-0.049 Sum_probs=35.9
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCC-CCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015826 178 NASALEALLNAGVLGLKSFMCPSG-INDFPMTNASHIKEGLSVLARYKRPLLVH 230 (399)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~-~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 230 (399)
..+.++.+++.||+.+-+....-+ ......++.++++++++.|+++|+.+.+-
T Consensus 12 ~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt 65 (443)
T PRK15452 12 TLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVV 65 (443)
T ss_pred CHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 467788888999998744211000 00012357789999999999999888765
No 370
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=21.32 E-value=8e+02 Score=24.22 Aligned_cols=108 Identities=12% Similarity=-0.020 Sum_probs=56.9
Q ss_pred CchHHHHHHHHcCCeeeeecCcCCC-CCCCCcHHHHHHHHHH---Hh-ccC-ceeEEeeeeeeCCChhhHHHHHHHHHcC
Q 015826 116 EGFPSGTKAAAAGGITTLIDMPLNS-DPSTISTETLKLKVDA---AE-KRI-YVDVGFWGGLVPENAYNASALEALLNAG 189 (399)
Q Consensus 116 e~~~~~~~~al~~GvTtv~d~~~~~-~~~~~~~~~~~~~~~~---~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~G 189 (399)
+.+...+.+.+.+|+--+-|=-.-. .+.....+.+....+. +. ..+ ..-|.+ .++....+..+..+.+.+.|
T Consensus 160 ~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~--NiT~~~~em~~ra~~~~~~G 237 (412)
T TIGR03326 160 EEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLA--NITAPVREMERRAELVADLG 237 (412)
T ss_pred HHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEE--EecCCHHHHHHHHHHHHHhC
Confidence 4455667888999998876642111 1111223333333322 22 111 111222 23444445566666667788
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015826 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (399)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 233 (399)
+..+-+-... ..-..++.+.+.+...+++++.|..-
T Consensus 238 ~~~~mv~~~~--------~G~~~l~~l~~~~~~~~l~ih~Hra~ 273 (412)
T TIGR03326 238 GQYVMVDVVV--------CGWSALQYIRELTEDLGLAIHAHRAM 273 (412)
T ss_pred CCeEEEEeec--------cchHHHHHHHHhhccCCeEEEEcCCc
Confidence 8766442211 22345777666666779999999644
No 371
>PRK12569 hypothetical protein; Provisional
Probab=21.16 E-value=6.3e+02 Score=22.94 Aligned_cols=29 Identities=3% Similarity=0.019 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecCChhh
Q 015826 208 TNASHIKEGLSVLARYKRPLLVHAEMEKG 236 (399)
Q Consensus 208 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 236 (399)
-+++.|++.++.|+++|+.+-.|..-++.
T Consensus 44 GDp~~M~~tv~lA~~~~V~IGAHPsyPD~ 72 (245)
T PRK12569 44 GDPNIMRRTVELAKAHGVGIGAHPGFRDL 72 (245)
T ss_pred CCHHHHHHHHHHHHHcCCEeccCCCCCcC
Confidence 47899999999999999999999977764
No 372
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.14 E-value=6.3e+02 Score=22.91 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhcCCCEEEecC
Q 015826 211 SHIKEGLSVLARYKRPLLVHAE 232 (399)
Q Consensus 211 ~~l~~~~~~a~~~g~~v~~H~~ 232 (399)
+.++.+.+.|+++|+.+.+|..
T Consensus 138 ~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 138 DGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHHhCCEEEEeec
Confidence 4567777888888888888764
No 373
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=21.06 E-value=2.7e+02 Score=24.87 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHCCC
Q 015826 300 SSLDLLMEAKTNGD 313 (399)
Q Consensus 300 ~~l~~i~~ak~~G~ 313 (399)
...+.|+.+-++|+
T Consensus 135 ~~~~ai~~~Y~~g~ 148 (223)
T PF06415_consen 135 DALEAIEASYARGI 148 (223)
T ss_dssp SHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHcCCC
Confidence 46788888888875
No 374
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=20.92 E-value=8.6e+02 Score=24.46 Aligned_cols=109 Identities=13% Similarity=0.028 Sum_probs=63.5
Q ss_pred CcCchHHHHHHHHcCCeeeeecCcCCCCCCCCcHHHHHHHHHHHhcc----C-ceeEEeeeeeeCCChhhHHHHHHHHHc
Q 015826 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR----I-YVDVGFWGGLVPENAYNASALEALLNA 188 (399)
Q Consensus 114 ~~e~~~~~~~~al~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~l~~l~~~ 188 (399)
+.+.+...++.+...|++.+.-.. +..|.....+.+.+.++..... + ...+....+ +-..+++++|.++
T Consensus 116 s~EEI~~ea~~~~~~G~~~i~Lvs-Ge~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig-----~lt~eey~~Lkea 189 (469)
T PRK09613 116 TQEEIREEVKALEDMGHKRLALVA-GEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIA-----PTTVENYKKLKEA 189 (469)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEe-CCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEee-----cCCHHHHHHHHHc
Confidence 345566777888899999987764 4454445566666655554421 1 112222111 1235788999999
Q ss_pred CCcEEEEeecC-C-----CC-CCCCCCCHHHHHHHHHHHHhcCCC-EE
Q 015826 189 GVLGLKSFMCP-S-----GI-NDFPMTNASHIKEGLSVLARYKRP-LL 228 (399)
Q Consensus 189 G~~~ik~~~~~-~-----~~-~~~~~~~~~~l~~~~~~a~~~g~~-v~ 228 (399)
|+..+.++.-. + .. +.-+..+-+.-...++.|++.|+. |.
T Consensus 190 Gv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg 237 (469)
T PRK09613 190 GIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVG 237 (469)
T ss_pred CCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeC
Confidence 99887665311 0 00 001234556666788888888886 53
No 375
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=20.39 E-value=92 Score=24.87 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=12.8
Q ss_pred eeEEEEECCEEEEec
Q 015826 60 SGAVEIKEGNIISIV 74 (399)
Q Consensus 60 ~~~V~I~dG~I~~Ig 74 (399)
...|-|+||||+++.
T Consensus 49 f~~iti~dGKiv~~~ 63 (147)
T COG4939 49 FVTITIQDGKIVACT 63 (147)
T ss_pred eEEEEEeCCEEEEEE
Confidence 467899999999985
No 376
>PRK05588 histidinol-phosphatase; Provisional
Probab=20.30 E-value=1e+02 Score=27.88 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=24.1
Q ss_pred eeecccccCCCCCCCcCchHHHHHHHHcCCeeee
Q 015826 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTL 133 (399)
Q Consensus 100 lID~H~H~~~~~~~~~e~~~~~~~~al~~GvTtv 133 (399)
.+|.|+|..... ....++..-.+.|.+.|++.+
T Consensus 1 ~~D~H~HT~~s~-~~~~~~ee~v~~A~~~Gl~~~ 33 (255)
T PRK05588 1 MFDTHIHTEFST-DSKMKIEEAIKKAKENNLGII 33 (255)
T ss_pred CeeecccCCCCC-CcccCHHHHHHHHHHcCCCEE
Confidence 479999987542 234456777889999999854
No 377
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.16 E-value=4.8e+02 Score=23.57 Aligned_cols=32 Identities=9% Similarity=-0.022 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEecCChhhch
Q 015826 207 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 238 (399)
Q Consensus 207 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 238 (399)
.++.++..++.+++++.|+.+..-+-+.+...
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d 83 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVD 83 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHH
Confidence 46889999999999999999998887766544
No 378
>PRK14847 hypothetical protein; Provisional
Probab=20.15 E-value=7.7e+02 Score=23.55 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=15.3
Q ss_pred HHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHH
Q 015826 184 ALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 221 (399)
Q Consensus 184 ~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~ 221 (399)
.|.+.|++.|.. ++|..+.++.+.+-+.++
T Consensus 62 ~L~~lGVd~IEv--------G~Pa~s~~e~e~ir~I~~ 91 (333)
T PRK14847 62 QLVAVGLKEIEV--------AFPSASQTDFDFVRKLID 91 (333)
T ss_pred HHHHcCCCEEEe--------eCCCCCHHHHHHHHHHHH
Confidence 334456666654 234455555555554444
No 379
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=20.13 E-value=5.3e+02 Score=23.98 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecCChhhchhHHhhccCcCCchhhhcCCCCCChHHHHHHHHHHHHHHhhhccCCCCCC
Q 015826 208 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 287 (399)
Q Consensus 208 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g 287 (399)
.+.+.++++++.|.+.+.|+.+-......--..... -...+..+++++ +
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~------------------------~~~~~~~~a~~~-------~ 74 (284)
T PRK12737 26 HNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDY------------------------IVAIAEVAARKY-------N 74 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHH------------------------HHHHHHHHHHHC-------C
Q ss_pred ceEEEEcCCChhHHHHHHHHHHHCCCC
Q 015826 288 AHLHIVHLSDASSSLDLLMEAKTNGDS 314 (399)
Q Consensus 288 ~~vhi~H~s~~~~~l~~i~~ak~~G~~ 314 (399)
+|+ +.|+--. .+++.+.++-+.|..
T Consensus 75 VPV-alHLDH~-~~~e~i~~ai~~Gft 99 (284)
T PRK12737 75 IPL-ALHLDHH-EDLDDIKKKVRAGIR 99 (284)
T ss_pred CCE-EEECCCC-CCHHHHHHHHHcCCC
No 380
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=20.09 E-value=5.7e+02 Score=22.02 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=7.2
Q ss_pred EEEcCCChhHHHHH
Q 015826 291 HIVHLSDASSSLDL 304 (399)
Q Consensus 291 hi~H~s~~~~~l~~ 304 (399)
...++++. ...+.
T Consensus 101 ~~i~~~~~-~~~~~ 113 (203)
T cd00405 101 KAIRVKDE-EDLEK 113 (203)
T ss_pred EEEecCCh-hhHHH
Confidence 34677765 44443
No 381
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=20.02 E-value=90 Score=25.31 Aligned_cols=14 Identities=29% Similarity=0.620 Sum_probs=12.8
Q ss_pred eeEEEEECCEEEEe
Q 015826 60 SGAVEIKEGNIISI 73 (399)
Q Consensus 60 ~~~V~I~dG~I~~I 73 (399)
+..|+|+||+|.+|
T Consensus 117 ~~EIvvkDG~V~eI 130 (131)
T PF11068_consen 117 GVEIVVKDGKVIEI 130 (131)
T ss_dssp TEEEEEETTEEEEE
T ss_pred CcEEEEECCEEEEe
Confidence 68999999999987
Done!