BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015827
         (399 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  172 bits (435), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 111/161 (68%), Gaps = 6/161 (3%)

Query: 16  PGFRFHPTDEELVGFYLKRKIQHRPLPIELIKQVDIYKYDPWDLPKELATAGEKEWYFYC 75
           PGFRFHPTD+ELV  YL RK   + LP+ +I +VD+YK+DPWDLP E A  G +EWYF+ 
Sbjct: 17  PGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLP-ERALFGAREWYFFT 75

Query: 76  PRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSDGTKCIGLKKSLVFYRGRAAKGIKTDW 135
           PRDRKY N +RPNR  G G+WKATG D+P+  +   + +G+KK+LVFY G+A +G+KTDW
Sbjct: 76  PRDRKYPNGSRPNRAAGNGYWKATGADKPV--APRGRTLGIKKALVFYAGKAPRGVKTDW 133

Query: 136 MMHEFRLPSLTYSAPQKKLLDKTIPPNDAWAICRIFKKTNS 176
           +MHE+RL     +A   K     +   D W +CR++ K N 
Sbjct: 134 IMHEYRLADAGRAAAGAKKGSLRL---DDWVLCRLYNKKNE 171


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  172 bits (435), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 119/173 (68%), Gaps = 12/173 (6%)

Query: 5   NEIDKIDDVMLP-GFRFHPTDEELVGFYLKRKIQHRPLPIELIKQVDIYKYDPWDLPKEL 63
            E D +  + LP GFRF+PTDEEL+  YL RK       ++LI ++D+YK+DPW LP + 
Sbjct: 7   QETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK- 65

Query: 64  ATAGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSDGTKCIGLKKSLVFY 123
           A  GEKEWYF+ PRDRKY N +RPNRV G+G+WKATGTD+ I S++G + +G+KK+LVFY
Sbjct: 66  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQR-VGIKKALVFY 123

Query: 124 RGRAAKGIKTDWMMHEFRLPSLTYSAPQKKLLDKTIPPNDAWAICRIFKKTNS 176
            G+A KG KT+W+MHE+RL   +      KL        D W +CRI+KK +S
Sbjct: 124 IGKAPKGTKTNWIMHEYRLIEPSRRNGSTKL--------DDWVLCRIYKKQSS 168


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  171 bits (433), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 119/173 (68%), Gaps = 12/173 (6%)

Query: 5   NEIDKIDDVMLP-GFRFHPTDEELVGFYLKRKIQHRPLPIELIKQVDIYKYDPWDLPKEL 63
            E D +  + LP GFRF+PTDEEL+  YL RK       ++LI ++D+YK+DPW LP + 
Sbjct: 10  QETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK- 68

Query: 64  ATAGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSDGTKCIGLKKSLVFY 123
           A  GEKEWYF+ PRDRKY N +RPNRV G+G+WKATGTD+ I S++G + +G+KK+LVFY
Sbjct: 69  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQR-VGIKKALVFY 126

Query: 124 RGRAAKGIKTDWMMHEFRLPSLTYSAPQKKLLDKTIPPNDAWAICRIFKKTNS 176
            G+A KG KT+W+MHE+RL   +      KL        D W +CRI+KK +S
Sbjct: 127 IGKAPKGTKTNWIMHEYRLIEPSRRNGSTKL--------DDWVLCRIYKKQSS 171


>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
          Length = 471

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 375 SNLPWDSPPCTSEMSTTYSTNN 396
            N+PW S  C+S ++TTYS+ N
Sbjct: 217 GNVPWYSEACSSTLATTYSSGN 238


>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
           Arabidopsis Thaliana
 pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
           Arabidopsis Thaliana With Amppnp Bound
          Length = 509

 Score = 28.1 bits (61), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 11/70 (15%)

Query: 1   MDDKNEIDKIDDVMLPGFRFHPTDEELVGFYLKRKIQHRPLPIELIKQVDIYKYDPWDLP 60
           + D  E D+ID+    G++F P  E     Y++R +       EL +    + + PW+ P
Sbjct: 407 LPDSREFDRIDNPQFEGYKFDPNGE-----YVRRWLP------ELSRLPTDWIHHPWNAP 455

Query: 61  KELATAGEKE 70
           + +  A   E
Sbjct: 456 ESVLQAAGIE 465


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,416,823
Number of Sequences: 62578
Number of extensions: 521465
Number of successful extensions: 927
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 914
Number of HSP's gapped (non-prelim): 5
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)