Query 015827
Match_columns 399
No_of_seqs 171 out of 980
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 03:13:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 3.6E-56 1.2E-60 406.5 14.7 168 2-176 4-171 (174)
2 1ut7_A No apical meristem prot 100.0 4.9E-56 1.7E-60 404.4 14.1 166 1-177 4-169 (171)
3 1cmb_A Met APO-repressor; DNA- 16.3 1.6E+02 0.0054 24.2 4.2 38 21-62 50-87 (104)
4 1ldd_A APC2WHB, anaphase promo 14.9 88 0.003 24.5 2.4 26 15-41 37-63 (74)
5 2c4b_A Barnase mcoeeti fusion; 13.5 97 0.0033 27.3 2.4 36 23-61 4-43 (143)
6 3nr5_A MAF1, repressor of RNA 9.6 67 0.0023 28.8 0.1 13 46-58 119-131 (164)
7 3cpr_A Dihydrodipicolinate syn 9.1 1E+02 0.0036 29.2 1.3 18 14-32 118-135 (304)
8 4dox_A Coat protein; all helix 8.7 1E+02 0.0036 28.9 1.0 20 17-36 158-177 (226)
9 3fkr_A L-2-keto-3-deoxyarabona 8.6 1.5E+02 0.005 28.3 2.1 28 13-42 109-139 (309)
10 1f6k_A N-acetylneuraminate lya 8.5 1.2E+02 0.0042 28.5 1.5 19 14-33 106-124 (293)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=3.6e-56 Score=406.52 Aligned_cols=168 Identities=49% Similarity=1.014 Sum_probs=135.2
Q ss_pred CccccccccCCCCCCCceecCChHHHHHHHHHHHHhCCCCCCCceeeccCCCCCCCCchhhhhcCCCceEEEeecccccC
Q 015827 2 DDKNEIDKIDDVMLPGFRFHPTDEELVGFYLKRKIQHRPLPIELIKQVDIYKYDPWDLPKELATAGEKEWYFYCPRDRKY 81 (399)
Q Consensus 2 ~e~~~m~~~~~~LPPGFRF~PTDEELV~~YLrrKi~g~plp~~vI~evDVY~~ePWdLP~~~a~~ge~eWYFFspr~rKy 81 (399)
+.++|++. ...|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+ .+..++++||||++|++||
T Consensus 4 ~~~~~~~~-~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~-~~~~g~~ewYFFs~r~~ky 81 (174)
T 3ulx_A 4 RRERDAEA-ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPE-RALFGAREWYFFTPRDRKY 81 (174)
T ss_dssp -----CCS-TTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGG-GCSSCSSEEEEEEECCC--
T ss_pred cccccccc-ccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhh-hhccCCceEEEEecccccc
Confidence 33445443 468999999999999999999999999999999999999999999999999 5667889999999999999
Q ss_pred CCCCCCceecccceeeccCCCccEEcCCCCeEEEEEEEEEEeeccCCCCCccCceEeeeecCCCCCCCcccccccCCCCC
Q 015827 82 RNSARPNRVTGAGFWKATGTDRPIYSSDGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRLPSLTYSAPQKKLLDKTIPP 161 (399)
Q Consensus 82 ~~G~R~nRatggG~WKatG~~K~I~s~~G~~vVG~KKtLvFy~Gra~~g~KT~WvMhEYrL~~~~~~~~~~~~~~~~~~~ 161 (399)
++|.|++|++++||||++|++++|.+. +++||+||+|+||.|+++++.||+|+||||+|.+........ ......
T Consensus 82 ~~g~R~nR~t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~---~~~~~~ 156 (174)
T 3ulx_A 82 PNGSRPNRAAGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGA---KKGSLR 156 (174)
T ss_dssp ---CCSCEEETTEEEEECSCCEEECCS--SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC--------------C
T ss_pred CCCCCceeecCCceEccCCCCcEEeeC--CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCccccc---ccCCCC
Confidence 999999999999999999999999864 589999999999999999999999999999998643211000 111124
Q ss_pred CCceEEEEEEecCCc
Q 015827 162 NDAWAICRIFKKTNS 176 (399)
Q Consensus 162 ~dd~VLCRIykK~~s 176 (399)
.++|||||||+|++.
T Consensus 157 ~~~wVlCrvf~K~~~ 171 (174)
T 3ulx_A 157 LDDWVLCRLYNKKNE 171 (174)
T ss_dssp CSSEEEEEEEESCC-
T ss_pred CCCEEEEEEEEcCCC
Confidence 679999999999864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=4.9e-56 Score=404.43 Aligned_cols=166 Identities=50% Similarity=0.925 Sum_probs=134.0
Q ss_pred CCccccccccCCCCCCCceecCChHHHHHHHHHHHHhCCCCCCCceeeccCCCCCCCCchhhhhcCCCceEEEeeccccc
Q 015827 1 MDDKNEIDKIDDVMLPGFRFHPTDEELVGFYLKRKIQHRPLPIELIKQVDIYKYDPWDLPKELATAGEKEWYFYCPRDRK 80 (399)
Q Consensus 1 M~e~~~m~~~~~~LPPGFRF~PTDEELV~~YLrrKi~g~plp~~vI~evDVY~~ePWdLP~~~a~~ge~eWYFFspr~rK 80 (399)
|+.++.-......|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+ .+..++++||||++|++|
T Consensus 4 m~~~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~-~~~~g~~ewyFFs~r~~k 82 (171)
T 1ut7_A 4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPN-KALFGEKEWYFFSPRDRK 82 (171)
T ss_dssp CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHH-HSSSCSSEEEEEEECCC-
T ss_pred cccccCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhc-hhhcCCccEEEEeccccc
Confidence 5666543445578999999999999999999999999999999999999999999999999 566789999999999999
Q ss_pred CCCCCCCceecccceeeccCCCccEEcCCCCeEEEEEEEEEEeeccCCCCCccCceEeeeecCCCCCCCcccccccCCCC
Q 015827 81 YRNSARPNRVTGAGFWKATGTDRPIYSSDGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRLPSLTYSAPQKKLLDKTIP 160 (399)
Q Consensus 81 y~~G~R~nRatggG~WKatG~~K~I~s~~G~~vVG~KKtLvFy~Gra~~g~KT~WvMhEYrL~~~~~~~~~~~~~~~~~~ 160 (399)
|++|.|++|+|++||||++|++++|.+. +++||+||+|+||+|+++++.||+|+||||+|..... .....
T Consensus 83 ~~~g~R~~R~t~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~--------~~~~~ 152 (171)
T 1ut7_A 83 YPNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR--------RNGST 152 (171)
T ss_dssp ------CCEEETTEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------------
T ss_pred cCCCCcccccCCCCEEeccCCCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc--------ccCcc
Confidence 9999999999999999999999999974 4899999999999999999999999999999986421 01123
Q ss_pred CCCceEEEEEEecCCch
Q 015827 161 PNDAWAICRIFKKTNSM 177 (399)
Q Consensus 161 ~~dd~VLCRIykK~~s~ 177 (399)
..++|||||||+|+.+.
T Consensus 153 ~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 153 KLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp --CCEEEEEEEECC---
T ss_pred cCCCEEEEEEEEcCCCC
Confidence 56899999999998753
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=16.28 E-value=1.6e+02 Score=24.21 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=31.6
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCCceeeccCCCCCCCCchhh
Q 015827 21 HPTDEELVGFYLKRKIQHRPLPIELIKQVDIYKYDPWDLPKE 62 (399)
Q Consensus 21 ~PTDEELV~~YLrrKi~g~plp~~vI~evDVY~~ePWdLP~~ 62 (399)
|-|.-||+..-...-..|+|||. +.|+-+..|.++|+.
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHH
Confidence 56888888876777779999997 569999999999984
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=14.95 E-value=88 Score=24.46 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.4
Q ss_pred CCCceecC-ChHHHHHHHHHHHHhCCCC
Q 015827 15 LPGFRFHP-TDEELVGFYLKRKIQHRPL 41 (399)
Q Consensus 15 PPGFRF~P-TDEELV~~YLrrKi~g~pl 41 (399)
|.|+.|.. |++||-. ||-+|+....+
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 55899998 9999887 69999987654
No 5
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=13.48 E-value=97 Score=27.27 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHHhCCCCCCCcee--eccCCCCCCC--Cchh
Q 015827 23 TDEELVGFYLKRKIQHRPLPIELIK--QVDIYKYDPW--DLPK 61 (399)
Q Consensus 23 TDEELV~~YLrrKi~g~plp~~vI~--evDVY~~ePW--dLP~ 61 (399)
|+++-|..||+. ...||..+|. +++--+.+|- .|..
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~ 43 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLAD 43 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHH
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhh
Confidence 556667788886 3457887775 4566677874 3544
No 6
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=9.56 E-value=67 Score=28.77 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=11.0
Q ss_pred eeeccCCCCCCCC
Q 015827 46 IKQVDIYKYDPWD 58 (399)
Q Consensus 46 I~evDVY~~ePWd 58 (399)
+.++|||.+.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 5688999999983
No 7
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=9.08 E-value=1e+02 Score=29.21 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=14.5
Q ss_pred CCCCceecCChHHHHHHHH
Q 015827 14 MLPGFRFHPTDEELVGFYL 32 (399)
Q Consensus 14 LPPGFRF~PTDEELV~~YL 32 (399)
+|| |.|.|++++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 456 568999999999874
No 8
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=8.66 E-value=1e+02 Score=28.90 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=15.4
Q ss_pred CceecCChHHHHHHHHHHHH
Q 015827 17 GFRFHPTDEELVGFYLKRKI 36 (399)
Q Consensus 17 GFRF~PTDEELV~~YLrrKi 36 (399)
|..+.||++|+|.|=..+++
T Consensus 158 GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 158 GLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp CCSSCCCHHHHHHHHTC---
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 89999999999998655554
No 9
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=8.61 E-value=1.5e+02 Score=28.32 Aligned_cols=28 Identities=21% Similarity=0.584 Sum_probs=18.0
Q ss_pred CCCCCce---ecCChHHHHHHHHHHHHhCCCCC
Q 015827 13 VMLPGFR---FHPTDEELVGFYLKRKIQHRPLP 42 (399)
Q Consensus 13 ~LPPGFR---F~PTDEELV~~YLrrKi~g~plp 42 (399)
.+|| |. |.||+++|+.||-. -+..-++|
T Consensus 109 v~~P-yy~~~~~~s~~~l~~~f~~-va~a~~lP 139 (309)
T 3fkr_A 109 AMPP-YHGATFRVPEAQIFEFYAR-VSDAIAIP 139 (309)
T ss_dssp ECCS-CBTTTBCCCHHHHHHHHHH-HHHHCSSC
T ss_pred EcCC-CCccCCCCCHHHHHHHHHH-HHHhcCCC
Confidence 3566 54 89999999998643 22323455
No 10
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=8.49 E-value=1.2e+02 Score=28.47 Aligned_cols=19 Identities=21% Similarity=0.418 Sum_probs=14.6
Q ss_pred CCCCceecCChHHHHHHHHH
Q 015827 14 MLPGFRFHPTDEELVGFYLK 33 (399)
Q Consensus 14 LPPGFRF~PTDEELV~~YLr 33 (399)
+|| |.|.|++++|+.||-.
T Consensus 106 ~~P-~y~~~~~~~l~~~f~~ 124 (293)
T 1f6k_A 106 VTP-FYYKFSFPEIKHYYDT 124 (293)
T ss_dssp ECC-CSSCCCHHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHHH
Confidence 445 5589999999998643
Done!