Query 015828
Match_columns 399
No_of_seqs 151 out of 380
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 01:16:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 2E-58 4.2E-63 453.4 4.1 300 4-322 6-345 (351)
2 KOG3849 GDP-fucose protein O-f 97.9 8.6E-05 1.9E-09 73.4 10.2 282 4-320 37-368 (386)
3 PF05830 NodZ: Nodulation prot 96.8 0.037 8E-07 55.9 14.7 248 5-310 10-289 (321)
4 KOG3705 Glycoprotein 6-alpha-L 78.7 5.7 0.00012 42.0 6.8 129 139-307 340-475 (580)
5 PLN02232 ubiquinone biosynthes 61.7 23 0.00051 31.6 6.1 100 134-247 48-153 (160)
6 PRK15451 tRNA cmo(5)U34 methyl 49.8 26 0.00057 33.5 4.7 87 138-241 133-230 (247)
7 PF14771 DUF4476: Domain of un 47.8 33 0.00071 28.2 4.4 36 219-269 39-74 (95)
8 PF00799 Gemini_AL1: Geminivir 45.8 23 0.0005 31.0 3.3 29 217-246 14-42 (114)
9 PF00667 FAD_binding_1: FAD bi 36.2 71 0.0015 30.1 5.3 115 218-355 52-176 (219)
10 PF10892 DUF2688: Protein of u 33.0 31 0.00067 27.0 1.8 16 216-232 42-57 (60)
11 smart00874 B5 tRNA synthetase 30.2 46 0.00099 25.6 2.4 24 212-236 12-35 (71)
12 PF00036 EF-hand_1: EF hand; 28.0 44 0.00096 22.0 1.7 26 331-356 4-29 (29)
13 COG0859 RfaF ADP-heptose:LPS h 27.8 90 0.0019 31.3 4.7 74 223-316 198-271 (334)
14 PRK10556 hypothetical protein; 26.2 43 0.00092 29.1 1.7 19 220-238 3-21 (111)
15 PF02845 CUE: CUE domain; Int 24.1 31 0.00068 24.3 0.5 38 253-295 4-41 (42)
16 COG0763 LpxB Lipid A disacchar 24.0 1.2E+02 0.0026 32.0 4.8 88 238-325 2-115 (381)
17 PF03484 B5: tRNA synthetase B 23.1 49 0.0011 25.9 1.4 25 212-237 12-36 (70)
18 PF09400 DUF2002: Protein of u 22.5 46 0.001 29.1 1.2 19 220-238 3-21 (111)
19 PF13833 EF-hand_8: EF-hand do 21.7 89 0.0019 22.3 2.5 25 331-355 29-53 (54)
20 PF01531 Glyco_transf_11: Glyc 21.3 4.9E+02 0.011 25.8 8.4 115 140-310 137-260 (298)
21 PF06394 Pepsin-I3: Pepsin inh 20.1 56 0.0012 26.8 1.2 32 183-214 39-70 (76)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=2e-58 Score=453.42 Aligned_cols=300 Identities=34% Similarity=0.615 Sum_probs=210.1
Q ss_pred cCCChhHHHHHHHHHHHHHHHhCceEeecccCCCCccCCCCC-----CCCCCCHHHHHHhccccceEcccCChhhhhhhh
Q 015828 4 CNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWADPSE-----FQDIFDVDHFITSLRDEVRILKELPPRLKKRVE 78 (399)
Q Consensus 4 ~nGGLnq~R~~IcdaV~vArlLNATLVlP~l~~~s~w~D~S~-----F~dIfD~dhFi~~L~~dVrIvk~LP~~~~~~~~ 78 (399)
|.||+||||.++++||++|++||+|||||.+...+.|++.++ |+++||+++|++.++.+|.+.+.+|........
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 889999999999999999999999999999999999999987 999999999999999999999998866544211
Q ss_pred c---------------------------ccccccCCCC-cCChhhHHhhchhhhhhc------ceEEEcccCcccccCCC
Q 015828 79 M---------------------------GRVLSMPPIS-WSDISYYHNQILPLVQKY------KVVHLNRTDARLANNGQ 124 (399)
Q Consensus 79 ~---------------------------~~~~~~~~~~-~s~~~yy~~~ilP~l~~~------~vi~l~~~~~rLa~d~l 124 (399)
. .......+.. |+.+.+|+++++|.+.++ +|+.|+++..++..+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 1 0112222222 788889999999999886 99999999999998888
Q ss_pred ChhhhhhhhhhcccccccchHHHHHHHHHHHHHH-hcCCeEEEeccchhhhHhhhccCCCCChHHHHHHHHHHhhCcchh
Q 015828 125 PLEIQKLRCRVNFSALRFTSQIEDLGKRVIKLLR-QNGPFLVLHLRYEMDMLAFSGCTQGCNKEEVEELTRMRYAYPWWK 203 (399)
Q Consensus 125 p~~~qrLRCr~~f~ALrF~~~I~~lg~~lV~Rmr-~~gpfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~ 203 (399)
+.++|| +|+|+++|+++|+++|+++. ..++|||+|||+|+|| +++|.+++ +...|+.+|. |.
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~----~~ 228 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRC----WG 228 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-------TTTHHH----H-
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC---chHHHHHhHh----hc
Confidence 889987 99999999999999999999 7899999999999999 88999955 5667777775 35
Q ss_pred hccCChHhhhcCCCCCCCHHHHHHHHHHcCCCCCceEEEEeccccCccccchHHHHhCCCccccccCCChhchhhhcccc
Q 015828 204 EKIINSDLKRKDGLCPLTPEETALILRALDIDPNMQIYIAAGEIYGGERRMANLAKAYPKLVRKETLLEPSDLRFFQNHS 283 (399)
Q Consensus 204 ~k~i~~~~~R~~G~CPltPeEvgl~L~alGf~~~T~IYlA~g~iygg~~~l~~L~~~fPnl~tKe~L~~~eeL~~f~~~~ 283 (399)
++.+++...|..+.||++|++++.+++++|+.+.|.||||++++|||.+.|++|++.||++++|+++.+.+|+++|..
T Consensus 229 ~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 306 (351)
T PF10250_consen 229 KKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND-- 306 (351)
T ss_dssp GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-------
T ss_pred cccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--
Confidence 667788888999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhhhhhhhhhhccCCccccCCCCchhHHHhHhhhhcCCc
Q 015828 284 SQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRFLGYK 322 (399)
Q Consensus 284 s~~AAlDy~Vcl~SDvFv~t~~Gnfa~~V~GhR~y~G~~ 322 (399)
+++|+||++||++||+||+|..++|+.+|+++|.+.|..
T Consensus 307 ~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~ 345 (351)
T PF10250_consen 307 DQLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKP 345 (351)
T ss_dssp S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred cchhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCC
Confidence 999999999999999999999889999999999999964
No 2
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=8.6e-05 Score=73.43 Aligned_cols=282 Identities=18% Similarity=0.244 Sum_probs=143.0
Q ss_pred cCCChhHHHHHHHHHHHHHHHhCceEeecccC---CCCccCCCCCCCCCCCHHH------------HHHhccccce----
Q 015828 4 CNGGLNQMRAAICDMVAIARYLNVTLIVPELD---KTSFWADPSEFQDIFDVDH------------FITSLRDEVR---- 64 (399)
Q Consensus 4 ~nGGLnq~R~~IcdaV~vArlLNATLVlP~l~---~~s~w~D~S~F~dIfD~dh------------Fi~~L~~dVr---- 64 (399)
|-|-..+|-..+.-..|.|+.||.|||+|-.- +-.+-+---.|...|.++- |+..|..+.=
T Consensus 37 CMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~~pe~~n~~vpf~~yF~vepl~~YhRVitm~dFm~klapthwp~~~ 116 (386)
T KOG3849|consen 37 CMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYKHPETKNLMVPFEFYFQVEPLAKYHRVITMQDFMKKLAPTHWPGTP 116 (386)
T ss_pred ccccccchHHHHHHHHHHHHHhcccccCCcchhccCCcccccccchhheeecccHhhhhhheeHHHHHHHhCcccCCCCc
Confidence 66888999999999999999999999999652 1111111246888887753 3333332210
Q ss_pred ---EcccC-----Chhh--hhhhhcc--cccccCCCCcCChhhHH------hhc---hhhh-----hhcceEEEcccCcc
Q 015828 65 ---ILKEL-----PPRL--KKRVEMG--RVLSMPPISWSDISYYH------NQI---LPLV-----QKYKVVHLNRTDAR 118 (399)
Q Consensus 65 ---Ivk~L-----P~~~--~~~~~~~--~~~~~~~~~~s~~~yy~------~~i---lP~l-----~~~~vi~l~~~~~r 118 (399)
+--+- |..- ..++.++ .....--++..+..||- .+. ...+ ++|-|+.|++.-..
T Consensus 117 Rva~c~k~a~qr~pdkp~Ch~KeGNPFGPfWDqfhvsFv~sE~f~~i~Fd~~~~~~~~kW~~kfp~eeyPVLAf~gAPA~ 196 (386)
T KOG3849|consen 117 RVAICDKSAAQRSPDKPGCHSKEGNPFGPFWDQFHVSFVGSEYFGDIGFDLNQMGSRKKWLEKFPSEEYPVLAFSGAPAP 196 (386)
T ss_pred ceeeeehhhhccCCCCCCCcccCCCCCCCchhheEeeeeccccccccccchhhcchHHHHHhhCCcccCceeeecCCCCC
Confidence 00000 0000 0000000 00000001111112221 111 1111 24667777643221
Q ss_pred c--ccCCCChhhhhhhhhhcccccccchHHHHHHHHHHHHHHhcCCeEEEeccchhhhHhhhccCCCCChHHHHHHHHHH
Q 015828 119 L--ANNGQPLEIQKLRCRVNFSALRFTSQIEDLGKRVIKLLRQNGPFLVLHLRYEMDMLAFSGCTQGCNKEEVEELTRMR 196 (399)
Q Consensus 119 L--a~d~lp~~~qrLRCr~~f~ALrF~~~I~~lg~~lV~Rmr~~gpfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R 196 (399)
. -.+.+ .+|| -||.+.+|.+.|++.+.---. .||+++|||.-.||+-- |.+.-.....- |-
T Consensus 197 FPv~~e~~--~lQk--------Yl~WS~r~~e~~k~fI~a~L~-rpfvgiHLRng~DWvra--Cehikd~~~~h-lf--- 259 (386)
T KOG3849|consen 197 FPVKGEVW--SLQK--------YLRWSSRITEQAKKFISANLA-RPFVGIHLRNGADWVRA--CEHIKDTTNRH-LF--- 259 (386)
T ss_pred Cccccccc--cHHH--------HHHHHHHHHHHHHHHHHHhcC-cceeEEEeecCchHHHH--HHHhcccCCCc-cc---
Confidence 1 11122 3665 478999999999887764333 49999999999999865 76421100000 00
Q ss_pred hhCcchhhccCChHhhhcCCCCCCCHHHHHHHHH-HcCCC-CCceEEEEeccccCccccchHHH-HhCCCccccccCCCh
Q 015828 197 YAYPWWKEKIINSDLKRKDGLCPLTPEETALILR-ALDID-PNMQIYIAAGEIYGGERRMANLA-KAYPKLVRKETLLEP 273 (399)
Q Consensus 197 ~~~~~w~~k~i~~~~~R~~G~CPltPeEvgl~L~-alGf~-~~T~IYlA~g~iygg~~~l~~L~-~~fPnl~tKe~L~~~ 273 (399)
+-|.--+. -+....=....|-=+.+|+-.-++ ..|-= .-..+|+|+-. +.-+.-|. +++|-=+.-
T Consensus 260 -ASpQClGy-~~~~gaLt~e~C~Psk~~I~rqik~~v~si~dakSVfVAsDs----~hmi~Eln~aL~~~~i~v------ 327 (386)
T KOG3849|consen 260 -ASPQCLGY-GHHLGALTKEICSPSKQQILRQIKEKVGSIGDAKSVFVASDS----DHMIDELNEALKPYEIEV------ 327 (386)
T ss_pred -cChhhccc-cccccccchhhhCccHHHHHHHHHHHHhhhcccceEEEeccc----hhhhHHHHHhhcccceeE------
Confidence 00000000 000000112346444455432221 22221 33479999866 22233333 333311110
Q ss_pred hchhhhcccchhhhhhhhhhhccCCccccCCCCchhHHHhHhhhhcC
Q 015828 274 SDLRFFQNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRFLG 320 (399)
Q Consensus 274 eeL~~f~~~~s~~AAlDy~Vcl~SDvFv~t~~Gnfa~~V~GhR~y~G 320 (399)
-.|+| .-+-+|..|.-+||.||++--++|+..|.-.|-..|
T Consensus 328 h~l~p------dd~y~dLaIlGqadhFiGNCvSsfsafvKRERD~~G 368 (386)
T KOG3849|consen 328 HRLEP------DDMYTDLAILGQADHFIGNCVSSFSAFVKRERDHAG 368 (386)
T ss_pred EecCc------ccchhhhhhhcccchhhhhhHHHHHHHHhhhhcccC
Confidence 11111 245689999999999999999999999999998888
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=96.81 E-value=0.037 Score=55.87 Aligned_cols=248 Identities=17% Similarity=0.239 Sum_probs=122.1
Q ss_pred CCChhHHHHHHHHHHHHHHHhCceEeecccCCCCccCCC----CCCCCCCCHHHHHHhcc--ccceEcccCChhhhhhhh
Q 015828 5 NGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWADP----SEFQDIFDVDHFITSLR--DEVRILKELPPRLKKRVE 78 (399)
Q Consensus 5 nGGLnq~R~~IcdaV~vArlLNATLVlP~l~~~s~w~D~----S~F~dIfD~dhFi~~L~--~dVrIvk~LP~~~~~~~~ 78 (399)
-+|+|.-==+++-|-.+|+-.|.||||= |+++ ..|...|++ |-+-.. ..|+|+-+- .+.+.
T Consensus 10 r~g~gd~l~~la~aw~~a~~~~r~l~id-------w~~s~~~~~~f~n~f~~--ffepv~~i~~~~~~~~d--~i~~~-- 76 (321)
T PF05830_consen 10 RTGLGDCLWSLAAAWRYAKRTGRTLVID-------WRGSCYLDQPFTNAFPV--FFEPVEDIAGVRVICDD--RINQF-- 76 (321)
T ss_dssp -S-HHHHHHHHHHHHHHHHHHT-EEEEE--------BT-TT-SSTTSBSHHH--HB---SEETTEEEE-SG--GGGT---
T ss_pred cCCchhHHHHHHHHHHHHHHhCCeEEEE-------cCCceecCCcccccCCc--ccchhhhhcCceeEecc--hhhhh--
Confidence 4899998899999999999999999983 7775 456666554 444443 345544221 11110
Q ss_pred cccccccCCCCcCChh---------h-HH--hhchhhhh------hcceEEEcccCcccccCCCChhhhhhhhhhccccc
Q 015828 79 MGRVLSMPPISWSDIS---------Y-YH--NQILPLVQ------KYKVVHLNRTDARLANNGQPLEIQKLRCRVNFSAL 140 (399)
Q Consensus 79 ~~~~~~~~~~~~s~~~---------y-y~--~~ilP~l~------~~~vi~l~~~~~rLa~d~lp~~~qrLRCr~~f~AL 140 (399)
.-+...-|.-|-.+. + +. +++--+++ ...||+..=..++.. .++. | ..|..|
T Consensus 77 -~~~g~~fp~~w~~p~~~~~~~pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~~~~c~-----~~ae--R--~if~sl 146 (321)
T PF05830_consen 77 -SFPGPFFPAWWNKPSIDCVYRPDEQIFRERDELRQLFQSQEDHEANTVVCDACLMWRCD-----EEAE--R--EIFSSL 146 (321)
T ss_dssp ----SSEESGGGGS-GGGGS---HHHHHHHHHHHHHHHHSSS--S-SEEEE-S--TTSS------HHHH--H--HHHHHS
T ss_pred -cCCCCcChhHHhCCCcceecCChHHHhhhhHHHHHHhhcccccccchhhhHhhcCCcch-----hHHH--H--HHHHhC
Confidence 001112222333332 1 11 11122332 256888776555542 2333 3 479999
Q ss_pred ccchHHHHHHHHHHHHHHhcCCeEEEeccch--hhhHhhhccCCCCChHHHHHHHHHHhhCcchhhccCChHhhhcCCCC
Q 015828 141 RFTSQIEDLGKRVIKLLRQNGPFLVLHLRYE--MDMLAFSGCTQGCNKEEVEELTRMRYAYPWWKEKIINSDLKRKDGLC 218 (399)
Q Consensus 141 rF~~~I~~lg~~lV~Rmr~~gpfiAlHLR~E--~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G~C 218 (399)
+-+++|++..+.+-+.-=...+=|++|-|.- +|.+.+ +|+. .+.| ..|.+..
T Consensus 147 kpR~eIqarID~iy~ehf~g~~~IGVHVRhGngeD~~~h-~~~~--~D~e-~~L~~V~---------------------- 200 (321)
T PF05830_consen 147 KPRPEIQARIDAIYREHFAGYSVIGVHVRHGNGEDIMDH-APYW--ADEE-RALRQVC---------------------- 200 (321)
T ss_dssp -B-HHHHHHHHHHHHHHTTTSEEEEEEE------------------HHHH-HHHHHHH----------------------
T ss_pred CCCHHHHHHHHHHHHHHcCCCceEEEEEeccCCcchhcc-Cccc--cCch-HHHHHHH----------------------
Confidence 9999999999888777655567899999942 233333 2222 1110 0111110
Q ss_pred CCCHHHHHHHHHHcCCCCCceEEEEeccccCccccchHHHHhCCCccccccCCChhchhhhcc-----cchhhhhhhhhh
Q 015828 219 PLTPEETALILRALDIDPNMQIYIAAGEIYGGERRMANLAKAYPKLVRKETLLEPSDLRFFQN-----HSSQMAALDYLV 293 (399)
Q Consensus 219 PltPeEvgl~L~alGf~~~T~IYlA~g~iygg~~~l~~L~~~fPnl~tKe~L~~~eeL~~f~~-----~~s~~AAlDy~V 293 (399)
.....++++-...++.|+||+=. ...++-+++.||.+++-++=..+..-.++.+ .+-..|-+|-+.
T Consensus 201 -----~ai~~ak~~~~~k~~~IFLATDS----aeVid~fr~~FPdiiti~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~L 271 (321)
T PF05830_consen 201 -----TAIDKAKALAPPKPVRIFLATDS----AEVIDQFRKKFPDIITIPKQFPASQAGPLHSAAVGIEGGESALIDMYL 271 (321)
T ss_dssp -----HHHHHHHTS--SS-EEEEEEES-----HHHHHHHHHHSTTEE----------------HHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhccCCCCeeEEEecCc----HHHHHHHHHHCCCeEEcccccCCCCCCcCcccccccchHHHHHHHHHH
Confidence 11122345556678899999977 3678999999999887654333222112222 112478899999
Q ss_pred hccCCccc-cCCCCchhH
Q 015828 294 SLESDIFV-PTYDGNMAK 310 (399)
Q Consensus 294 cl~SDvFv-~t~~Gnfa~ 310 (399)
..++|+-| .+-.+.|++
T Consensus 272 LSrCD~LIr~~ptS~Fsr 289 (321)
T PF05830_consen 272 LSRCDYLIRFPPTSAFSR 289 (321)
T ss_dssp HTTSSEEEEESTT-GGGH
T ss_pred HHhCCeEEEcCCCchhhh
Confidence 99999999 555555554
No 4
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.66 E-value=5.7 Score=42.00 Aligned_cols=129 Identities=15% Similarity=0.196 Sum_probs=78.1
Q ss_pred ccccchHHHHHHHHHHHHHHhcCCeEEEeccchhhhHhhhccCCCCChHHHHHHHHHHhhCcchhhccCChHhhhcCCCC
Q 015828 139 ALRFTSQIEDLGKRVIKLLRQNGPFLVLHLRYEMDMLAFSGCTQGCNKEEVEELTRMRYAYPWWKEKIINSDLKRKDGLC 218 (399)
Q Consensus 139 ALrF~~~I~~lg~~lV~Rmr~~gpfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G~C 218 (399)
-+||+|-.++.-++-.+.|.=..|-|+||.|-.. .-|+++---.|+.|=..+..|
T Consensus 340 L~Rpqp~t~~~l~~a~k~lg~~~PivGvhvRRTD---------KVGTEAAfH~~eEYM~~vE~~---------------- 394 (580)
T KOG3705|consen 340 LMRPQPATQEKLDKALKSLGLDKPIVGVHVRRTD---------KVGTEAAFHALEEYMEWVEIW---------------- 394 (580)
T ss_pred HhCCChhhHHHHHHHHHhCCCCCceeeEEEEecc---------cccchhhhhhHHHHHHHHHHH----------------
Confidence 4788888886655555555445699999998742 222332222333333211111
Q ss_pred CCCHHHHHHHHHHcCCCCCceEEEEeccccCccccchHHHHhCCCccccccCCChhchhhhccc-------chhhhhhhh
Q 015828 219 PLTPEETALILRALDIDPNMQIYIAAGEIYGGERRMANLAKAYPKLVRKETLLEPSDLRFFQNH-------SSQMAALDY 291 (399)
Q Consensus 219 PltPeEvgl~L~alGf~~~T~IYlA~g~iygg~~~l~~L~~~fPnl~tKe~L~~~eeL~~f~~~-------~s~~AAlDy 291 (399)
-.+|..=|=+-.-+||||+-+. .-+.--|.-|||.+ +.+..|.+.-+.- +..---+|.
T Consensus 395 -------f~~le~rg~~~~rRiflAsDDp----~vv~EAk~kYPnYe----~igd~eia~~A~l~nRYTd~sL~GvIlDI 459 (580)
T KOG3705|consen 395 -------FKVLEKRGKPLERRIFLASDDP----TVVPEAKNKYPNYE----VIGDTEIAKTAQLNNRYTDASLMGVILDI 459 (580)
T ss_pred -------HHHHHHhCCchhheEEEecCCc----hhchHhhccCCCcE----EeccHHHHHHhhccccchhhhhhheeeee
Confidence 1233333445567899999984 55666788999975 5555666432222 122334688
Q ss_pred hhhccCCccccCCCCc
Q 015828 292 LVSLESDIFVPTYDGN 307 (399)
Q Consensus 292 ~Vcl~SDvFv~t~~Gn 307 (399)
.+.+.+|..|.|+++-
T Consensus 460 h~LS~~d~LVCTFSSQ 475 (580)
T KOG3705|consen 460 HILSKVDYLVCTFSSQ 475 (580)
T ss_pred eeecccceEEEechHH
Confidence 8888888888888774
No 5
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=61.69 E-value=23 Score=31.63 Aligned_cols=100 Identities=13% Similarity=-0.007 Sum_probs=59.4
Q ss_pred hhcccccccchHHHHHHHHHHHHHHhcCCeEEEeccchhhhHhh----hccCCCCChHHHH--HHHHHHhhCcchhhccC
Q 015828 134 RVNFSALRFTSQIEDLGKRVIKLLRQNGPFLVLHLRYEMDMLAF----SGCTQGCNKEEVE--ELTRMRYAYPWWKEKII 207 (399)
Q Consensus 134 r~~f~ALrF~~~I~~lg~~lV~Rmr~~gpfiAlHLR~E~Dmla~----sgC~~g~~~~e~~--eL~~~R~~~~~w~~k~i 207 (399)
.++..+|++.++..+.-+.+.+.|+..|.++-++.-.+...+.. .-|...+.+-+.- ..+++++-
T Consensus 48 v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl--------- 118 (160)
T PLN02232 48 VTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYL--------- 118 (160)
T ss_pred EEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhH---------
Confidence 34556788878888888899999999899888877544322110 1111100000000 00011110
Q ss_pred ChHhhhcCCCCCCCHHHHHHHHHHcCCCCCceEEEEeccc
Q 015828 208 NSDLKRKDGLCPLTPEETALILRALDIDPNMQIYIAAGEI 247 (399)
Q Consensus 208 ~~~~~R~~G~CPltPeEvgl~L~alGf~~~T~IYlA~g~i 247 (399)
..+... +++|+|...+|+..||.+-+.-+++.|-.
T Consensus 119 ----~~si~~-f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 119 ----KYSING-YLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred ----HHHHHH-CcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 001112 48999999999999999998888887763
No 6
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=49.78 E-value=26 Score=33.47 Aligned_cols=87 Identities=13% Similarity=0.189 Sum_probs=50.2
Q ss_pred cccccch--HHHHHHHHHHHHHHhcCCeEEEe-ccchhh-----hHhhhccC---CCCChHHHHHHHHHHhhCcchhhcc
Q 015828 138 SALRFTS--QIEDLGKRVIKLLRQNGPFLVLH-LRYEMD-----MLAFSGCT---QGCNKEEVEELTRMRYAYPWWKEKI 206 (399)
Q Consensus 138 ~ALrF~~--~I~~lg~~lV~Rmr~~gpfiAlH-LR~E~D-----mla~sgC~---~g~~~~e~~eL~~~R~~~~~w~~k~ 206 (399)
.+|.|.+ +.+.+-+.+.+.|+..|.++-.+ .+.+.+ ++..+... .|.+++|.++ .|
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~---~~---------- 199 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQ---KR---------- 199 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHH---HH----------
Confidence 3455543 45677788888888889877654 443321 22221111 1222222211 11
Q ss_pred CChHhhhcCCCCCCCHHHHHHHHHHcCCCCCceEE
Q 015828 207 INSDLKRKDGLCPLTPEETALILRALDIDPNMQIY 241 (399)
Q Consensus 207 i~~~~~R~~G~CPltPeEvgl~L~alGf~~~T~IY 241 (399)
+.+.+-..|+|++|...+|+..||..-..+|
T Consensus 200 ----~~~~~~~~~~~~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 200 ----SMLENVMLTDSVETHKARLHKAGFEHSELWF 230 (247)
T ss_pred ----HHHHhhcccCCHHHHHHHHHHcCchhHHHHH
Confidence 1233456789999999999999999755444
No 7
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=47.83 E-value=33 Score=28.23 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHcCCCCCceEEEEeccccCccccchHHHHhCCCcccccc
Q 015828 219 PLTPEETALILRALDIDPNMQIYIAAGEIYGGERRMANLAKAYPKLVRKET 269 (399)
Q Consensus 219 PltPeEvgl~L~alGf~~~T~IYlA~g~iygg~~~l~~L~~~fPnl~tKe~ 269 (399)
++|-.+++-+|+...|+ +.+|+.++-++|++++++.
T Consensus 39 ~~T~~Qv~~il~~f~fd---------------~~kl~~lk~l~p~i~D~~n 74 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFD---------------NDKLKALKLLYPYIVDPQN 74 (95)
T ss_pred ceeHHHHHHHHHHcCCC---------------HHHHHHHHHHhhhccCHHH
Confidence 49999999999999998 3579999999999999963
No 8
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=45.77 E-value=23 Score=31.00 Aligned_cols=29 Identities=31% Similarity=0.358 Sum_probs=16.6
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEEecc
Q 015828 217 LCPLTPEETALILRALDIDPNMQIYIAAGE 246 (399)
Q Consensus 217 ~CPltPeEvgl~L~alGf~~~T~IYlA~g~ 246 (399)
.|||+|||+...|+++--+ ....||..+.
T Consensus 14 qC~l~ke~~l~~L~~l~~~-~~~~yI~v~r 42 (114)
T PF00799_consen 14 QCSLTKEEALEQLKNLLTP-SNKKYIRVCR 42 (114)
T ss_dssp T----HHHHHHHHHH---S-S-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCc-cCceEEEeec
Confidence 5999999999999999654 4677886654
No 9
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=36.23 E-value=71 Score=30.11 Aligned_cols=115 Identities=21% Similarity=0.304 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHcCCCCCceEEEEeccc-------cCccccchHHHHhCCCccccccCCChhchhhhccc---chhhh
Q 015828 218 CPLTPEETALILRALDIDPNMQIYIAAGEI-------YGGERRMANLAKAYPKLVRKETLLEPSDLRFFQNH---SSQMA 287 (399)
Q Consensus 218 CPltPeEvgl~L~alGf~~~T~IYlA~g~i-------ygg~~~l~~L~~~fPnl~tKe~L~~~eeL~~f~~~---~s~~A 287 (399)
|+=.+++|..+|+.||.+.++.|=+...+- ++.. .+|+.+|-...+=....+.+-|..+..+ ....+
T Consensus 52 P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~~~~~~~~~~~~---~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~ 128 (219)
T PF00667_consen 52 PPNDPEEVERLLKRLGLDPDEPVTLKPKEQNNSVKPPFPSP---ITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKE 128 (219)
T ss_dssp -SSEHHHHHHHHHHHTSGTTSEEEEEESSTTSSCCSSSSSS---EEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCcceEEEEEecccccccccccccc---eeeeeeeeeeeecccccccceeeeeeecCCCHHHHH
Confidence 445678899999999999999999988872 1222 2233333322222223333333333333 33455
Q ss_pred hhhhhhhccCCccccCCCCchhHHHhHhhhhcCCcceeecchHHHHHHHhhhcCCCCChHHHHHHHHH
Q 015828 288 ALDYLVSLESDIFVPTYDGNMAKVVEGHRRFLGYKKTILLERKLLVDLIDQYSNGSLTWDEFSAAVKE 355 (399)
Q Consensus 288 AlDy~Vcl~SDvFv~t~~Gnfa~~V~GhR~y~G~~ktI~Pdr~~l~~l~~~~~~~~~~w~~f~~~v~~ 355 (399)
.|..+... .|...|.. .+.-.++.++.++..|..-.+.|+.|-+.+..
T Consensus 129 ~L~~l~~~-----------------~~~~~~~~---~~~~~~~t~~dil~~fps~~~pl~~ll~~lp~ 176 (219)
T PF00667_consen 129 RLLELASD-----------------EGKDDYKD---YIWRERRTLLDILEDFPSCKPPLEELLELLPP 176 (219)
T ss_dssp HHHHCTSS-----------------HHHHHHHH---HTTTTTHCHHHHHHHSTTBTC-HHHHHHHS-B
T ss_pred HHHHhcch-----------------hhhhhhhh---hhhcccCcHHHHHhhCcccCCCHHHhhhhCCC
Confidence 55554332 23333322 22234578889998887777888888877644
No 10
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=32.96 E-value=31 Score=26.99 Aligned_cols=16 Identities=56% Similarity=0.839 Sum_probs=13.2
Q ss_pred CCCCCCHHHHHHHHHHc
Q 015828 216 GLCPLTPEETALILRAL 232 (399)
Q Consensus 216 G~CPltPeEvgl~L~al 232 (399)
|-| +||||-+.+++++
T Consensus 42 ~~C-itpEE~~~I~e~~ 57 (60)
T PF10892_consen 42 GDC-ITPEEDREILEAT 57 (60)
T ss_pred hcc-CCHHHHHHHHHHH
Confidence 446 9999999999875
No 11
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=30.19 E-value=46 Score=25.56 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=20.1
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCCCC
Q 015828 212 KRKDGLCPLTPEETALILRALDIDP 236 (399)
Q Consensus 212 ~R~~G~CPltPeEvgl~L~alGf~~ 236 (399)
.+..|.. ++++|+..+|+.|||.-
T Consensus 12 ~~llG~~-i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 12 NRLLGLD-LSAEEIEEILKRLGFEV 35 (71)
T ss_pred HHHHCCC-CCHHHHHHHHHHCCCeE
Confidence 4566764 99999999999999974
No 12
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=28.05 E-value=44 Score=22.02 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=20.4
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHH
Q 015828 331 LLVDLIDQYSNGSLTWDEFSAAVKES 356 (399)
Q Consensus 331 ~l~~l~~~~~~~~~~w~~f~~~v~~~ 356 (399)
.+-+.||.=.+|.|+.+||...++++
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 45566776678999999999988763
No 13
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.80 E-value=90 Score=31.28 Aligned_cols=74 Identities=27% Similarity=0.285 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCCCCceEEEEeccccCccccchHHHHhCCCccccccCCChhchhhhcccchhhhhhhhhhhccCCcccc
Q 015828 223 EETALILRALDIDPNMQIYIAAGEIYGGERRMANLAKAYPKLVRKETLLEPSDLRFFQNHSSQMAALDYLVSLESDIFVP 302 (399)
Q Consensus 223 eEvgl~L~alGf~~~T~IYlA~g~iygg~~~l~~L~~~fPnl~tKe~L~~~eeL~~f~~~~s~~AAlDy~Vcl~SDvFv~ 302 (399)
.|+...|.+-| ..|.|.+|. .-....+.+.+..++.+. |+.+..|.. .+||- ..||.||+
T Consensus 198 ~~l~~~l~~~~----~~Vvl~g~~--~e~e~~~~i~~~~~~~~~---l~~k~sL~e-------~~~li----~~a~l~I~ 257 (334)
T COG0859 198 AELAELLIAKG----YQVVLFGGP--DEEERAEEIAKGLPNAVI---LAGKTSLEE-------LAALI----AGADLVIG 257 (334)
T ss_pred HHHHHHHHHCC----CEEEEecCh--HHHHHHHHHHHhcCCccc---cCCCCCHHH-------HHHHH----hcCCEEEc
Confidence 46777888888 689998887 344555677888887664 555444432 23322 68999999
Q ss_pred CCCCchhHHHhHhh
Q 015828 303 TYDGNMAKVVEGHR 316 (399)
Q Consensus 303 t~~Gnfa~~V~GhR 316 (399)
+.+|-|.=+-+.++
T Consensus 258 ~DSg~~HlAaA~~~ 271 (334)
T COG0859 258 NDSGPMHLAAALGT 271 (334)
T ss_pred cCChHHHHHHHcCC
Confidence 99997665555444
No 14
>PRK10556 hypothetical protein; Provisional
Probab=26.16 E-value=43 Score=29.06 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHcCCCCCc
Q 015828 220 LTPEETALILRALDIDPNM 238 (399)
Q Consensus 220 ltPeEvgl~L~alGf~~~T 238 (399)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLe~aGF~~D~ 21 (111)
T PRK10556 3 LRPDEVARVLEKAGFTVDV 21 (111)
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999998664
No 15
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=24.06 E-value=31 Score=24.31 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=24.4
Q ss_pred cchHHHHhCCCccccccCCChhchhhhcccchhhhhhhhhhhc
Q 015828 253 RMANLAKAYPKLVRKETLLEPSDLRFFQNHSSQMAALDYLVSL 295 (399)
Q Consensus 253 ~l~~L~~~fPnl~tKe~L~~~eeL~~f~~~~s~~AAlDy~Vcl 295 (399)
.+.-|+++||++- .+.| ..-|+ ++.++..+|+|.+.+.
T Consensus 4 ~v~~L~~mFP~~~-~~~I--~~~L~--~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 4 MVQQLQEMFPDLD-REVI--EAVLQ--ANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHSSSS--HHHH--HHHHH--HTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCC-HHHH--HHHHH--HcCCCHHHHHHHHHcC
Confidence 4678999999874 2222 12333 4566788999987653
No 16
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=23.96 E-value=1.2e+02 Score=32.00 Aligned_cols=88 Identities=22% Similarity=0.319 Sum_probs=60.5
Q ss_pred ceEEEEeccccC---ccccchHHHHhCCCcc------------ccccCCChhchhh----------hcccchhhhhhhhh
Q 015828 238 MQIYIAAGEIYG---GERRMANLAKAYPKLV------------RKETLLEPSDLRF----------FQNHSSQMAALDYL 292 (399)
Q Consensus 238 T~IYlA~g~iyg---g~~~l~~L~~~fPnl~------------tKe~L~~~eeL~~----------f~~~~s~~AAlDy~ 292 (399)
..|+|.+||.-| |..-+..|++.||++. --++|.+.+||.- +.-..-+...+-++
T Consensus 2 ~ki~i~AGE~SGDllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~~~i 81 (381)
T COG0763 2 LKIALSAGEASGDLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELVRYI 81 (381)
T ss_pred ceEEEEecccchhhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888777555 4456899999998663 2345555566521 11112345667789
Q ss_pred hhccCCccccCCCCchhHHHhHhhhhcC-Cccee
Q 015828 293 VSLESDIFVPTYDGNMAKVVEGHRRFLG-YKKTI 325 (399)
Q Consensus 293 Vcl~SDvFv~t~~Gnfa~~V~GhR~y~G-~~ktI 325 (399)
+...-|+||.-.+..|---|+..=+-.| +.|+|
T Consensus 82 ~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~ii 115 (381)
T COG0763 82 LANKPDVLILIDSPDFNLRVAKKLRKAGPKIKII 115 (381)
T ss_pred HhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeE
Confidence 9999999999999999888887766667 34554
No 17
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=23.07 E-value=49 Score=25.88 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=17.1
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCCCCC
Q 015828 212 KRKDGLCPLTPEETALILRALDIDPN 237 (399)
Q Consensus 212 ~R~~G~CPltPeEvgl~L~alGf~~~ 237 (399)
.+..|.. ++++|+.-+|+.|||.-.
T Consensus 12 ~~~lG~~-i~~~~i~~~L~~lg~~~~ 36 (70)
T PF03484_consen 12 NKLLGID-ISPEEIIKILKRLGFKVE 36 (70)
T ss_dssp HHHHTS----HHHHHHHHHHTT-EEE
T ss_pred HHHhCCC-CCHHHHHHHHHHCCCEEE
Confidence 4456764 999999999999999843
No 18
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=22.50 E-value=46 Score=29.08 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHcCCCCCc
Q 015828 220 LTPEETALILRALDIDPNM 238 (399)
Q Consensus 220 ltPeEvgl~L~alGf~~~T 238 (399)
|-|.||+.+|+..||..+.
T Consensus 3 lrpdeva~vle~~gf~~d~ 21 (111)
T PF09400_consen 3 LRPDEVARVLEKAGFERDY 21 (111)
T ss_dssp --HHHHHHHHHHTT-EEEE
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999998654
No 19
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=21.67 E-value=89 Score=22.32 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=17.9
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHH
Q 015828 331 LLVDLIDQYSNGSLTWDEFSAAVKE 355 (399)
Q Consensus 331 ~l~~l~~~~~~~~~~w~~f~~~v~~ 355 (399)
.|...+|.=.+|.|+|+||...+..
T Consensus 29 ~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 29 RLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHhcccCCCCCCCHHHHHHHHHh
Confidence 3444455555889999999988764
No 20
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=21.27 E-value=4.9e+02 Score=25.77 Aligned_cols=115 Identities=10% Similarity=0.134 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHHHHHHHhc-----CCeEEEeccchhhhHhhhcc--CCCCChHH--HHHHHHHHhhCcchhhccCChH
Q 015828 140 LRFTSQIEDLGKRVIKLLRQN-----GPFLVLHLRYEMDMLAFSGC--TQGCNKEE--VEELTRMRYAYPWWKEKIINSD 210 (399)
Q Consensus 140 LrF~~~I~~lg~~lV~Rmr~~-----gpfiAlHLR~E~Dmla~sgC--~~g~~~~e--~~eL~~~R~~~~~w~~k~i~~~ 210 (399)
..+.++|++........+... ...|+||.|-- |-+....- .++..+.+ .++++.++++
T Consensus 137 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~VHIRRG-Dy~~~~~~~~~~~~~~~~Yy~~Ai~~i~~~------------ 203 (298)
T PF01531_consen 137 FDIKDELREEFKEFLRELNLEIIIKNSNSVCVHIRRG-DYVSNGNHNWKHGICDKDYYKKAIEYIREK------------ 203 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEch-hccccccccccCCCCCHHHHHHHHHHHHHh------------
Q ss_pred hhhcCCCCCCCHHHHHHHHHHcCCCCCceEEEEeccccCccccchHHHHhCCCccccccCCChhchhhhcccchhhhhhh
Q 015828 211 LKRKDGLCPLTPEETALILRALDIDPNMQIYIAAGEIYGGERRMANLAKAYPKLVRKETLLEPSDLRFFQNHSSQMAALD 290 (399)
Q Consensus 211 ~~R~~G~CPltPeEvgl~L~alGf~~~T~IYlA~g~iygg~~~l~~L~~~fPnl~tKe~L~~~eeL~~f~~~~s~~AAlD 290 (399)
-.+..+||.|=+ ++-.++.++........... .-+..|
T Consensus 204 ------------------------~~~~~f~ifSDD-------~~w~k~~l~~~~~~~~~~~~-----------~~~~~D 241 (298)
T PF01531_consen 204 ------------------------VKNPKFFIFSDD-------IEWCKENLKFSNGDVYFSGN-----------NSPYED 241 (298)
T ss_pred ------------------------CCCCEEEEEcCC-------HHHHHHHHhhcCCcEEEECC-----------CCHHHH
Q ss_pred hhhhccCCccccCCCCchhH
Q 015828 291 YLVSLESDIFVPTYDGNMAK 310 (399)
Q Consensus 291 y~Vcl~SDvFv~t~~Gnfa~ 310 (399)
++...++|.+|.+ .|+|++
T Consensus 242 l~lms~C~~~Iis-nSTFsw 260 (298)
T PF01531_consen 242 LYLMSQCKHFIIS-NSTFSW 260 (298)
T ss_pred HHHHHhCCcEEEC-CChHHH
No 21
>PF06394 Pepsin-I3: Pepsin inhibitor-3-like repeated domain; InterPro: IPR010480 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The members of this group of proteins belong to MEROPS inhibitor family I33, clan IR; the nematode aspartyl protease inhibitors or Aspins. They are restricted to parasitic nematode species. Structural features common to the nematode Aspins include the presence of a signal peptide sequence and the conservation of all four cysteine residues in the mature protein. The Y[V.A]RDLT sequence motif has been suggested as being of crucial functional importance in several filarial nematode inhibitors [], this sequence is not conserved in Tco-API-1 from Trichostrongylus colubriformis (Black scour worm) and it has been demonstrated that Tco-API-1, is not an Aspin as it does not inhibit porcine pepsin []. Related inhibitors from Onchocerca volvulus, Ov33 [] and Ascaris suum (Pig roundworm), PI-3 [] inhibit the in vitro activity of aspartyl proteases such as pepsin and cathepsin E (MEROPS peptidase family A1). Aspin may facilitate the safe passage of the eggs of Ascaris through the host stomach without digestion by pepsin [, ]. The other parasitic nematodes known to express homologous proteins do not pass through the stomach of their hosts []. Several proteins in the family are potent allergens in mammals. The three-dimensional structures of pepsin inhibitor-3 (PI-3) from A. suum and of the complex between PI-3 and porcine pepsin at 1. 75 A and 2.45 A resolution, respectively, have revealed the mechanism of aspartic protease inhibition. PI-3 has a new fold consisting of two identical domains, each comprising an antiparallel beta-sheet flanked by an alpha-helix. In the enzyme-inhibitor complex, the N-terminal beta-strand of PI-3 pairs with one strand of the 'active site flap' (residues 70-82) of pepsin, thus forming an eight-stranded beta-sheet that spans the two proteins. PI-3 has a novel mode of inhibition, using its N-terminal residues to occupy and therefore block the first three binding pockets in pepsin for substrate residues C-terminal to the scissile bond (S1'-S3') [].; PDB: 1F32_A 1F34_B.
Probab=20.06 E-value=56 Score=26.85 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=21.0
Q ss_pred CCChHHHHHHHHHHhhCcchhhccCChHhhhc
Q 015828 183 GCNKEEVEELTRMRYAYPWWKEKIINSDLKRK 214 (399)
Q Consensus 183 g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~ 214 (399)
.++++|.+||+.+...+..|+....++-+++.
T Consensus 39 ~Lt~~E~~eL~~y~~~v~~y~~~l~~~iq~~~ 70 (76)
T PF06394_consen 39 DLTPDEQQELKTYQKKVAAYKEQLQQQIQEQV 70 (76)
T ss_dssp E--HHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999988899987666554443
Done!