Query 015828
Match_columns 399
No_of_seqs 151 out of 380
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:14:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 3.5E-15 1.2E-19 150.2 14.9 288 5-323 31-383 (408)
2 3zy2_A Putative GDP-fucose pro 99.3 1.4E-11 4.9E-16 122.8 10.2 261 4-320 16-348 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 97.8 0.00091 3.1E-08 70.1 19.7 246 5-320 155-421 (526)
4 2hhc_A NODZ, nodulation fucosy 97.6 0.00072 2.4E-08 65.5 13.5 143 135-313 143-294 (330)
5 1wgl_A TOLL-interacting protei 50.7 5.8 0.0002 29.7 1.4 49 251-304 10-58 (59)
6 3l32_A Phosphoprotein; antipar 38.9 15 0.00052 26.2 1.9 26 139-164 2-27 (45)
7 1p3q_Q VPS9P, vacuolar protein 30.8 11 0.00037 28.0 0.1 38 252-294 14-51 (54)
8 1l2m_A REP protein; A+B fold, 29.4 58 0.002 27.6 4.4 29 217-246 17-45 (118)
9 2ct9_A Calcium-binding protein 24.3 1.4E+02 0.0048 25.3 6.2 29 328-356 111-142 (208)
10 2dhy_A CUE domain-containing p 24.3 13 0.00044 28.6 -0.5 42 251-297 19-60 (67)
11 2g7j_A Putative cytoplasmic pr 22.6 31 0.0011 29.2 1.4 19 220-238 3-21 (124)
12 1s6c_A KV4 potassium channel-i 22.1 26 0.00088 29.1 0.9 51 303-358 68-123 (183)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.62 E-value=3.5e-15 Score=150.23 Aligned_cols=288 Identities=15% Similarity=0.235 Sum_probs=161.3
Q ss_pred CC-ChhHHHHHHHHHHHHHHHhCce----EeecccCCCCccCCC------CCCCCCCCHHHHHHhccccceEcccCChhh
Q 015828 5 NG-GLNQMRAAICDMVAIARYLNVT----LIVPELDKTSFWADP------SEFQDIFDVDHFITSLRDEVRILKELPPRL 73 (399)
Q Consensus 5 nG-GLnq~R~~IcdaV~vArlLNAT----LVlP~l~~~s~w~D~------S~F~dIfD~dhFi~~L~~dVrIvk~LP~~~ 73 (399)
.| |.|+||..+-.|.++|+.||.| ||||-...-.-|+-+ -.|++.||++++ +..|+|+.- +++
T Consensus 31 ~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~~vpVI~m--eeF 104 (408)
T 4ap5_A 31 PPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NKNIPVIEY--EQF 104 (408)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HTTSCEEEH--HHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----HhhCCeeEH--HHH
Confidence 45 8999999999999999999999 999976543345432 369999999865 445566532 222
Q ss_pred hhhhhcc---------------------------ccc------ccCCCCcCChhh-H----------------Hhhchhh
Q 015828 74 KKRVEMG---------------------------RVL------SMPPISWSDISY-Y----------------HNQILPL 103 (399)
Q Consensus 74 ~~~~~~~---------------------------~~~------~~~~~~~s~~~y-y----------------~~~ilP~ 103 (399)
....... ... ......+.++-| | ...+-|.
T Consensus 105 l~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~~~~~~~~~~~~ 184 (408)
T 4ap5_A 105 IAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQGSASIVAPL 184 (408)
T ss_dssp HHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEEECSBGGGGHHH
T ss_pred HHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEEEeecchhhhhh
Confidence 1110000 000 000000000001 0 0011133
Q ss_pred hhhc---ceEEEcccCcccccCCCChhhhhhhhhhcccccccchHHHHHHHHHHHHHHhcCCeEEEeccchhhhHhhhcc
Q 015828 104 VQKY---KVVHLNRTDARLANNGQPLEIQKLRCRVNFSALRFTSQIEDLGKRVIKLLRQNGPFLVLHLRYEMDMLAFSGC 180 (399)
Q Consensus 104 l~~~---~vi~l~~~~~rLa~d~lp~~~qrLRCr~~f~ALrF~~~I~~lg~~lV~Rmr~~gpfiAlHLR~E~Dmla~sgC 180 (399)
+.+. .-+-+..+...|+.-.-..+...+| ..|+|.+.|.+.|++.++..-. ++|+++|+|...||... |
T Consensus 185 ~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~-~~~~~~h~r~~~dw~~~--~ 256 (408)
T 4ap5_A 185 LLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLN-STDDADRIPFQEDWMKM--K 256 (408)
T ss_dssp HHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHC-CCTTTTTCCCCSSGGGC--C
T ss_pred hhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhC-cccceeecccchhHhhh--h
Confidence 3221 1111222222222111111233322 4799999999999999887653 67888888888777664 4
Q ss_pred CCCCChHHHHHHHHHHhhCcchhhccCChHhhhc-CCCCCCCHHHHHHHHHHcCCCCCceEEEEeccccCccccchHHHH
Q 015828 181 TQGCNKEEVEELTRMRYAYPWWKEKIINSDLKRK-DGLCPLTPEETALILRALDIDPNMQIYIAAGEIYGGERRMANLAK 259 (399)
Q Consensus 181 ~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~-~G~CPltPeEvgl~L~alGf~~~T~IYlA~g~iygg~~~l~~L~~ 259 (399)
.......-. -+.--||+.... ... ...+|-.++-+..+.+.+-=.+.+.||||+-+. +..+..|++
T Consensus 257 ~~~~~~~~~------~y~~~H~Rr~d~----~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~~---~~~~~~l~~ 323 (408)
T 4ap5_A 257 VKLGSALGG------PYLGVHLRRKDF----IWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAV---RKEYEELKK 323 (408)
T ss_dssp CCTTCBCCE------EEEEEEECCTTT----TTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECCC---HHHHHHHHH
T ss_pred cccccccCC------Cccccccccccc----hhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCCc---hhHHHHHHH
Confidence 321100000 000012221100 001 122333333333333333323456899998653 455788999
Q ss_pred hCCCccccccCCChhchhhhcccchhhhhhhhhhhccCCccccCCCCchhHHHhHhhhhcCCcc
Q 015828 260 AYPKLVRKETLLEPSDLRFFQNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRFLGYKK 323 (399)
Q Consensus 260 ~fPnl~tKe~L~~~eeL~~f~~~~s~~AAlDy~Vcl~SDvFv~t~~Gnfa~~V~GhR~y~G~~k 323 (399)
.+|.++.-.. ..+++..+ ...+.|.||-+||.+||+||+|..++|+..|.-.|.+.|+.+
T Consensus 324 ~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 324 LLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp HCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred hCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence 9998763221 23444433 234689999999999999999999999999999999999763
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.25 E-value=1.4e-11 Score=122.82 Aligned_cols=261 Identities=17% Similarity=0.295 Sum_probs=154.4
Q ss_pred cCCChhHHHHHHHHHHHHHHHhCceEeecccCCCCccCCC--CCCCCCCCHHHHHHhccccceEccc------C-----C
Q 015828 4 CNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWADP--SEFQDIFDVDHFITSLRDEVRILKE------L-----P 70 (399)
Q Consensus 4 ~nGGLnq~R~~IcdaV~vArlLNATLVlP~l~~~s~w~D~--S~F~dIfD~dhFi~~L~~dVrIvk~------L-----P 70 (399)
|-|-..||-..+.-+.+.|+.||.|||||-+-.-.. +.+ -.|++-|+++. |+..-|||.- | |
T Consensus 16 CMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~~~~~vpf~~yF~v~~----l~~yhrvi~me~Fm~~lap~~WP 90 (362)
T 3zy2_A 16 CMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-PETKMIPFEFLFQVGT----VAKYTRVVTMQEFTKKIMPTVWP 90 (362)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-SSCEEECHHHHBCHHH----HTTTSCEECHHHHHHHTHHHHSC
T ss_pred CcCccccHHHHHHHHHHHHHhhCceEecCccccccC-Ccccccchhheeecch----hhhhceeeeHHHHHHHhccccCC
Confidence 779999999999999999999999999997642211 111 24778888765 3334455422 1 1
Q ss_pred hhhh------------h---------hhhcc--c---ccccCC------------CCcC----ChhhHHhhchhhhhhcc
Q 015828 71 PRLK------------K---------RVEMG--R---VLSMPP------------ISWS----DISYYHNQILPLVQKYK 108 (399)
Q Consensus 71 ~~~~------------~---------~~~~~--~---~~~~~~------------~~~s----~~~yy~~~ilP~l~~~~ 108 (399)
.+-. . ++.++ . -+.+.. .+++ ..+ +.+.--|. +|=
T Consensus 91 ~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~-W~~~~p~~--~~p 167 (362)
T 3zy2_A 91 PEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKK-WLEKFPSE--EYP 167 (362)
T ss_dssp GGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------C-HHHHSCTT--TCS
T ss_pred cccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHH-HHHhCCcc--cCc
Confidence 1100 0 00000 0 011111 1111 001 12222222 578
Q ss_pred eEEEcccCcccccCCCC--hhhhhhhhhhcccccccchHHHHHHHHHHHHHHhcCCeEEEeccchhhhHhhhccCCCCC-
Q 015828 109 VVHLNRTDARLANNGQP--LEIQKLRCRVNFSALRFTSQIEDLGKRVIKLLRQNGPFLVLHLRYEMDMLAFSGCTQGCN- 185 (399)
Q Consensus 109 vi~l~~~~~rLa~d~lp--~~~qrLRCr~~f~ALrF~~~I~~lg~~lV~Rmr~~gpfiAlHLR~E~Dmla~sgC~~g~~- 185 (399)
|+.|++.-.- +-..+ -.||| -|+++++|.+.|++.|+.--. +||||+|||.-.||.-. |.+--.
T Consensus 168 VlAf~gaPa~--FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L~-rpyVgIHLR~G~DW~~a--C~hlk~~ 234 (362)
T 3zy2_A 168 VLAFSSAPAP--FPSKGKVWSIQK--------YLRWSSRITEQAKKFISANLA-KPFVAVHLRNDADWVRV--CEHIDTT 234 (362)
T ss_dssp EEEESSCSSC--SSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHCC-SSEEEEEECCCHHHHHH--HHTCCTT
T ss_pred eEeecCCCCC--CCcChhhHhHHH--------hccccHHHHHHHHHHHHHhcC-CCeEEEEEecCCcHHHH--Hhhhccc
Confidence 8888753221 10011 13443 699999999999999888443 49999999999999876 764111
Q ss_pred --h---HHHHHHHHHHhhCcchhhccCChHhhhcCC-----CCCCCHHH----HHHHHHHcCCCCCceEEEEeccccCcc
Q 015828 186 --K---EEVEELTRMRYAYPWWKEKIINSDLKRKDG-----LCPLTPEE----TALILRALDIDPNMQIYIAAGEIYGGE 251 (399)
Q Consensus 186 --~---~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G-----~CPltPeE----vgl~L~alGf~~~T~IYlA~g~iygg~ 251 (399)
+ +.-..+ .|. ...| .|==+.++ +..+++.++ -..||||+-. +
T Consensus 235 ~~~~lfaSPQC~--------Gy~---------~~~~~lt~emClPSle~I~rqIk~~vk~~~---lksVFIATDa----~ 290 (362)
T 3zy2_A 235 TNRPLFASEQCL--------GEG---------HHLGTLTKEICSPSKQQILEQIVEKVGSIG---AKSVFVASDK----D 290 (362)
T ss_dssp TCCCCTTTHHHH--------CGG---------GTTCCCCHHHHSCCHHHHHHHHHHHHHHHT---CSEEEEEESS----C
T ss_pred cCcccccCCccc--------CCc---------ccCcccchhccCCCHHHHHHHHHHHHHhcC---CcEEEEecCC----H
Confidence 0 000000 010 0111 23223333 344555554 5599999965 3
Q ss_pred ccchHHHHhCCCccccccCCChhchhhhcccchhhhhhhhhhhccCCccccCCCCchhHHHhHhhhhcC
Q 015828 252 RRMANLAKAYPKLVRKETLLEPSDLRFFQNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRFLG 320 (399)
Q Consensus 252 ~~l~~L~~~fPnl~tKe~L~~~eeL~~f~~~~s~~AAlDy~Vcl~SDvFv~t~~Gnfa~~V~GhR~y~G 320 (399)
..++-|+++|+....+ +.+ ++| ..|+||.+||.+||+||+|..++|+..|.-.|-..|
T Consensus 291 ~~~~ELk~~L~~~~v~--vv~---~~p------e~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 291 HMIDEINEALKPYEIE--AHR---QEP------DDMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp CCHHHHHHHHGGGTCC--EEC---CSS------CCHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhhccCce--EEE---eCC------chhHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 4678899988742111 111 111 189999999999999999999999999999999888
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.84 E-value=0.00091 Score=70.08 Aligned_cols=246 Identities=16% Similarity=0.178 Sum_probs=136.6
Q ss_pred CCChhHHHHHHHHHHHHHHHhCceEeecccCCCCccCC-CCCCCCCCCHHHHHHhccccceEcccCChhhhhhhhccccc
Q 015828 5 NGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWAD-PSEFQDIFDVDHFITSLRDEVRILKELPPRLKKRVEMGRVL 83 (399)
Q Consensus 5 nGGLnq~R~~IcdaV~vArlLNATLVlP~l~~~s~w~D-~S~F~dIfD~dhFi~~L~~dVrIvk~LP~~~~~~~~~~~~~ 83 (399)
-.|+..+-..++=|..+|-.+|.|||+-.-. |.- ...|+++|.. +...+... |.
T Consensus 155 ~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s~~C~~~-------~~------------ 209 (526)
T 2de0_X 155 GCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VSETCTDR-------SG------------ 209 (526)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SCSSCCCC-------CC------------
T ss_pred CCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cCccccCC-------Cc------------
Confidence 3589888888999999999999999995432 432 2467777775 22222221 00
Q ss_pred ccCCCCcCChhhHHhhchhhhhhcceEEEcccC-----cccccCCCChhh----hhhh-------h-hhcccccccchHH
Q 015828 84 SMPPISWSDISYYHNQILPLVQKYKVVHLNRTD-----ARLANNGQPLEI----QKLR-------C-RVNFSALRFTSQI 146 (399)
Q Consensus 84 ~~~~~~~s~~~yy~~~ilP~l~~~~vi~l~~~~-----~rLa~d~lp~~~----qrLR-------C-r~~f~ALrF~~~I 146 (399)
.....|..... -..+.||.+.-.+ .+..+-.+|.++ +++. | .+.-.-+|++++|
T Consensus 210 -~~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q~~~yl~rP~~~i 280 (526)
T 2de0_X 210 -ISTGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYLIRPQPWL 280 (526)
T ss_dssp -SCCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHHHHHHHTCBCHHH
T ss_pred -cccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHHHHHHHcCCCHHH
Confidence 01122332210 0123333332111 011111233332 2221 0 1111248999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEeccchhhhHhhhccCCCCChHHHHHHHHHHhhCcchhhccCChHhhhcCCCCCCCHHHHH
Q 015828 147 EDLGKRVIKLLRQNGPFLVLHLRYEMDMLAFSGCTQGCNKEEVEELTRMRYAYPWWKEKIINSDLKRKDGLCPLTPEETA 226 (399)
Q Consensus 147 ~~lg~~lV~Rmr~~gpfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G~CPltPeEvg 226 (399)
++..+.+.+.+.-.+|.|+||.|-- |-+.. ....-+.+ .|-.....| -
T Consensus 281 ~~~I~~~~~~l~~~~piVGVHIRrG-Dk~~~---E~~~~~~~-----~Y~~~v~~~-----------------------~ 328 (526)
T 2de0_X 281 EKEIEEATKKLGFKHPVIGVHVRRT-DKVGT---EAAFHPIE-----EYMVHVEEH-----------------------F 328 (526)
T ss_dssp HHHHHHHHHHHTCCSSEEEEEECCC---------CCCSCSHH-----HHHHHHHHH-----------------------H
T ss_pred HHHHHHHHHHhCCCCCEEEEEEeCC-CCCcc---ccccCCHH-----HHHHHHHHH-----------------------H
Confidence 9999999988766789999999973 33221 11111111 111100011 1
Q ss_pred HHHHHcCCCCCceEEEEeccccCccccchHHHHhCCCc--cccccCCChhch-hhhcccchhhhhhhhhhhccCCccccC
Q 015828 227 LILRALDIDPNMQIYIAAGEIYGGERRMANLAKAYPKL--VRKETLLEPSDL-RFFQNHSSQMAALDYLVSLESDIFVPT 303 (399)
Q Consensus 227 l~L~alGf~~~T~IYlA~g~iygg~~~l~~L~~~fPnl--~tKe~L~~~eeL-~~f~~~~s~~AAlDy~Vcl~SDvFv~t 303 (399)
..|+....+..+.||||+-+. ..++-+++.||+. ++-........+ ..+...+...+.+|.++.+++|+||+|
T Consensus 329 ~~l~~~~~~~~~~ifLATDDp----~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~~Vgt 404 (526)
T 2de0_X 329 QLLARRMQVDKKRVYLATDDP----SLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCT 404 (526)
T ss_dssp HHHHTTSCCSSCEEEEEESCH----HHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSEEEEC
T ss_pred HHHHhhcCCCCCeEEEEcCCH----HHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCeeecC
Confidence 112333467789999999884 6678888899985 322222111111 111111235789999999999999999
Q ss_pred CCCchhHHHhHhhhhcC
Q 015828 304 YDGNMAKVVEGHRRFLG 320 (399)
Q Consensus 304 ~~Gnfa~~V~GhR~y~G 320 (399)
.++||++++...+.-.+
T Consensus 405 ~sS~~srla~~l~~~~~ 421 (526)
T 2de0_X 405 FSSQVCRVAYEIMQTLH 421 (526)
T ss_dssp TTSHHHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHHhcCcC
Confidence 99999999988775443
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.60 E-value=0.00072 Score=65.47 Aligned_cols=143 Identities=8% Similarity=0.139 Sum_probs=79.2
Q ss_pred hcccccccchHHHHHHHHHHHHHHhcCCeEEEeccchhhhHhhhccCCCCChHHHHHHHHHHhhCcchhhccCChHhhhc
Q 015828 135 VNFSALRFTSQIEDLGKRVIKLLRQNGPFLVLHLRYEMDMLAFSGCTQGCNKEEVEELTRMRYAYPWWKEKIINSDLKRK 214 (399)
Q Consensus 135 ~~f~ALrF~~~I~~lg~~lV~Rmr~~gpfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~ 214 (399)
..|.-|+++++|++..+++.+.+-...++||||.|.=.+. ..|.++- .|.+.
T Consensus 143 ~i~~yl~p~~~i~~~i~~~~~~~~~~~~~VGVHIRrgD~~---~~~~~~~----------------~~~~~--------- 194 (330)
T 2hhc_A 143 LIFRNIKLRSEIRARIDALYEEHFSGHSIIGVHVRHGNGE---DIMEHAP----------------YWADS--------- 194 (330)
T ss_dssp HHHHHSCBCHHHHHHHHHHHHHHTTTSEEEEEEECC-------------------------------CHHH---------
T ss_pred HHHhcCCccHHHHHHHHHHHHHhccCCceEEEEEecCCCC---cccccCc----------------chHHH---------
Confidence 4457789999999999988876534469999999964321 1122210 01110
Q ss_pred CCCCCCCHHHHHHHHHHc-C-CC-CCceEEEEeccccCccccchHHHHhCCCccccc-cCCC-h-hchh-hhc-ccchhh
Q 015828 215 DGLCPLTPEETALILRAL-D-ID-PNMQIYIAAGEIYGGERRMANLAKAYPKLVRKE-TLLE-P-SDLR-FFQ-NHSSQM 286 (399)
Q Consensus 215 ~G~CPltPeEvgl~L~al-G-f~-~~T~IYlA~g~iygg~~~l~~L~~~fPnl~tKe-~L~~-~-eeL~-~f~-~~~s~~ 286 (399)
.|| -++.-.-++.+ . .+ .++.||||+-+. ..++-|++.||++.+-. .+.. . ..+- +.. ....+.
T Consensus 195 --~~~--l~~~~~~i~~~~~~~~~~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 266 (330)
T 2hhc_A 195 --ELA--LHQVCMAIRKAKALSYPKPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGAS 266 (330)
T ss_dssp --HHH--HHHHHHHHHHHHTSCCSSCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHH
T ss_pred --hHH--HHHHHHHHHHHHhccCcCceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccchH
Confidence 000 11111111111 1 12 468999999885 46788999999843321 1110 0 1110 000 112457
Q ss_pred hhhhhhhhccCCccc-cCCCCchhHHHh
Q 015828 287 AALDYLVSLESDIFV-PTYDGNMAKVVE 313 (399)
Q Consensus 287 AAlDy~Vcl~SDvFv-~t~~Gnfa~~V~ 313 (399)
+.+|.+..+.+|.+| .+..++|+...+
T Consensus 267 ~~~Dm~LLS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 267 ALIDMYLLARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp HHHHHHHHTTCSEEEEESTTCGGGHHHH
T ss_pred HHHHHHHHHcCCeeEECCCCCCHHHHHH
Confidence 889999999999999 545888988766
No 5
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=50.74 E-value=5.8 Score=29.67 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=35.4
Q ss_pred cccchHHHHhCCCccccccCCChhchhhhcccchhhhhhhhhhhccCCccccCC
Q 015828 251 ERRMANLAKAYPKLVRKETLLEPSDLRFFQNHSSQMAALDYLVSLESDIFVPTY 304 (399)
Q Consensus 251 ~~~l~~L~~~fPnl~tKe~L~~~eeL~~f~~~~s~~AAlDy~Vcl~SDvFv~t~ 304 (399)
+..++.|++|||++- ++.+ ..-|. ++..+..+|||-+..+..+-|-|++
T Consensus 10 ee~l~~L~emFP~ld-~~~I--~~vL~--a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMD-QEVI--RSVLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSSC-HHHH--HHHHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCCC-HHHH--HHHHH--HcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 567899999999874 3322 12233 4556789999999999888877664
No 6
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=38.87 E-value=15 Score=26.20 Aligned_cols=26 Identities=27% Similarity=0.636 Sum_probs=21.1
Q ss_pred ccccchHHHHHHHHHHHHHHhcCCeE
Q 015828 139 ALRFTSQIEDLGKRVIKLLRQNGPFL 164 (399)
Q Consensus 139 ALrF~~~I~~lg~~lV~Rmr~~gpfi 164 (399)
++-|+.=+.++|.++|+||++...|.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtGe~Ff 27 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSGERFL 27 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CccHHHHHHHHHHHHHHHHHccccHH
Confidence 45577889999999999999865554
No 7
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=30.77 E-value=11 Score=27.98 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=22.4
Q ss_pred ccchHHHHhCCCccccccCCChhchhhhcccchhhhhhhhhhh
Q 015828 252 RRMANLAKAYPKLVRKETLLEPSDLRFFQNHSSQMAALDYLVS 294 (399)
Q Consensus 252 ~~l~~L~~~fPnl~tKe~L~~~eeL~~f~~~~s~~AAlDy~Vc 294 (399)
..+..|++|||++- +|-+ .+-|. .+.+..-+|||-...
T Consensus 14 ~~~~~L~~MFP~lD-~evI--~~Vl~--a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMD-PSLI--EDVCI--AAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHSTTSC-HHHH--HHHHH--HSCC--CGGGC----
T ss_pred HHHHHHHHHcccCC-HHHH--HHHHH--HcCCCHHHHHHHHHh
Confidence 45788999999985 4433 23343 667778888887544
No 8
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=29.38 E-value=58 Score=27.58 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEEecc
Q 015828 217 LCPLTPEETALILRALDIDPNMQIYIAAGE 246 (399)
Q Consensus 217 ~CPltPeEvgl~L~alGf~~~T~IYlA~g~ 246 (399)
.|||++||+...|+.|--+. ...||..+.
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~-~~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPT-NKLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSS-CEEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCc-ceeeeeehh
Confidence 59999999999999987554 356666554
No 9
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=24.34 E-value=1.4e+02 Score=25.28 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=20.4
Q ss_pred chHHHHHHHhhhc---CCCCChHHHHHHHHHH
Q 015828 328 ERKLLVDLIDQYS---NGSLTWDEFSAAVKES 356 (399)
Q Consensus 328 dr~~l~~l~~~~~---~~~~~w~~f~~~v~~~ 356 (399)
....+..+|..+. +|.|+.++|...++.+
T Consensus 111 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~ 142 (208)
T 2ct9_A 111 RSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 142 (208)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCEEcHHHHHHHHHHH
Confidence 4455655565544 6789999999988765
No 10
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.34 E-value=13 Score=28.58 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=28.8
Q ss_pred cccchHHHHhCCCccccccCCChhchhhhcccchhhhhhhhhhhccC
Q 015828 251 ERRMANLAKAYPKLVRKETLLEPSDLRFFQNHSSQMAALDYLVSLES 297 (399)
Q Consensus 251 ~~~l~~L~~~fPnl~tKe~L~~~eeL~~f~~~~s~~AAlDy~Vcl~S 297 (399)
+..++-|++|||++- ++.| ..-|. ++..+..+|||-+..+..
T Consensus 19 ~~~v~~L~~MFP~lD-~~vI--~~vL~--a~~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMD-YDII--ECVLR--ANSGAVDATIDQLLQMNL 60 (67)
T ss_dssp HHHHHHHHHHCSSSC-HHHH--HHHHH--HHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHH--HHHHH--HcCCCHHHHHHHHHhcCC
Confidence 356889999999885 3333 24444 556778899987766543
No 11
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=22.63 E-value=31 Score=29.18 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHcCCCCCc
Q 015828 220 LTPEETALILRALDIDPNM 238 (399)
Q Consensus 220 ltPeEvgl~L~alGf~~~T 238 (399)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999998553
No 12
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=22.11 E-value=26 Score=29.05 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=29.9
Q ss_pred CCCC--chhHHHhHhhhhcCCcceeecchHHHHHHHhhh---cCCCCChHHHHHHHHHHHh
Q 015828 303 TYDG--NMAKVVEGHRRFLGYKKTILLERKLLVDLIDQY---SNGSLTWDEFSAAVKESHA 358 (399)
Q Consensus 303 t~~G--nfa~~V~GhR~y~G~~ktI~Pdr~~l~~l~~~~---~~~~~~w~~f~~~v~~~h~ 358 (399)
..+| ++.-.+...+.... .+....+..+|..+ .+|.|++++|...+..++.
T Consensus 68 d~~g~i~~~Ef~~~~~~~~~-----~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~ 123 (183)
T 1s6c_A 68 TQTGSVKFEDFVTALSILLR-----GTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYD 123 (183)
T ss_dssp TCSSCEEHHHHHHHHHHHHH-----CCHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHH
T ss_pred CCCCcEeHHHHHHHHHHHcC-----CCHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHH
Confidence 3455 45555555443321 12334455555444 4788999999999988753
Done!