Query 015828
Match_columns 399
No_of_seqs 151 out of 380
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 03:14:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015828.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015828hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgla_ a.5.2.4 (A:) Toll-inte 60.6 1.5 0.00011 31.4 1.4 49 251-304 10-58 (59)
2 d2ihoa2 d.3.1.18 (A:156-293) A 44.5 1.2 8.4E-05 36.4 -1.7 36 28-63 31-71 (138)
3 d1l5ia_ d.89.1.4 (A:) DNA-bind 33.6 20 0.0015 28.5 4.3 29 217-246 17-45 (118)
4 d2g7ja1 d.198.5.1 (A:1-112) Pu 24.7 14 0.001 28.8 1.7 18 220-237 3-20 (112)
5 d1vjna_ d.157.1.4 (A:) Hypothe 22.2 53 0.0038 27.2 5.2 43 14-61 142-184 (209)
6 d1jjcb2 a.6.1.1 (B:400-474) Do 18.5 31 0.0022 24.6 2.4 23 212-235 13-35 (75)
7 d2gh1a1 c.66.1.49 (A:13-293) M 18.3 27 0.0019 30.1 2.4 92 134-236 98-189 (281)
8 d1oqya2 a.5.2.1 (A:317-360) DN 17.6 7.7 0.00056 26.0 -1.1 26 221-246 1-30 (44)
9 d1mn3a_ a.5.2.4 (A:) Vacuolar 17.2 18 0.0013 25.0 0.7 38 251-293 13-50 (54)
10 d2fr5a1 c.97.1.1 (A:11-146) mo 15.5 42 0.0031 26.5 2.8 40 227-271 94-133 (136)
No 1
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.56 E-value=1.5 Score=31.38 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=37.3
Q ss_pred cccchHHHHhCCCccccccCCChhchhhhcccchhhhhhhhhhhccCCccccCC
Q 015828 251 ERRMANLAKAYPKLVRKETLLEPSDLRFFQNHSSQMAALDYLVSLESDIFVPTY 304 (399)
Q Consensus 251 ~~~l~~L~~~fPnl~tKe~L~~~eeL~~f~~~~s~~AAlDy~Vcl~SDvFv~t~ 304 (399)
+..+..|++|||++. ++.+ ..-|. .+.++..+|||=+.-..-+.|-|+.
T Consensus 10 Ee~i~~LkeMFP~~D-~~vI--~~VL~--a~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMD-QEVI--RSVLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSSC-HHHH--HHHHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCCC-HHHH--HHHHH--HcCCCHHHHHHHHHhcCCCCcCCCC
Confidence 567899999999986 3333 23444 6677889999999988888887764
No 2
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=44.53 E-value=1.2 Score=36.43 Aligned_cols=36 Identities=28% Similarity=0.584 Sum_probs=29.6
Q ss_pred eEeecccCCCCccCCC-----CCCCCCCCHHHHHHhccccc
Q 015828 28 TLIVPELDKTSFWADP-----SEFQDIFDVDHFITSLRDEV 63 (399)
Q Consensus 28 TLVlP~l~~~s~w~D~-----S~F~dIfD~dhFi~~L~~dV 63 (399)
=||+|...-++.|+++ .-=+.|||-|.|--..+.-|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 3899999999999996 34578999999988776443
No 3
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=33.63 E-value=20 Score=28.45 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEEecc
Q 015828 217 LCPLTPEETALILRALDIDPNMQIYIAAGE 246 (399)
Q Consensus 217 ~CPltPeEvgl~L~alGf~~~T~IYlA~g~ 246 (399)
+|||+|||+...|+.|--+.+ ..||..++
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~-~~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTN-KLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcc-eeEEEEcc
Confidence 599999999999999865544 45666554
No 4
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=24.75 E-value=14 Score=28.79 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHcCCCCC
Q 015828 220 LTPEETALILRALDIDPN 237 (399)
Q Consensus 220 ltPeEvgl~L~alGf~~~ 237 (399)
|-|.||+.+|+..||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999754
No 5
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=22.16 E-value=53 Score=27.16 Aligned_cols=43 Identities=21% Similarity=0.402 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCceEeecccCCCCccCCCCCCCCCCCHHHHHHhccc
Q 015828 14 AICDMVAIARYLNVTLIVPELDKTSFWADPSEFQDIFDVDHFITSLRD 61 (399)
Q Consensus 14 ~IcdaV~vArlLNATLVlP~l~~~s~w~D~S~F~dIfD~dhFi~~L~~ 61 (399)
.--+|+.+|+.|++-.|||-= |+.....| ++=.+|.|++.++.
T Consensus 142 ~~~ea~~~~~~l~pk~viP~H----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 142 GPKEAKEVADLLNAKVIIPMH----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp CHHHHHHHHHHTTCSEEEEES----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred CHHHHHHHHHHhCCCEEEEec----cCCccccc-CcCCHHHHHHHhhh
Confidence 356889999999999999963 32223333 45567889888763
No 6
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=18.49 E-value=31 Score=24.62 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=19.8
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCCC
Q 015828 212 KRKDGLCPLTPEETALILRALDID 235 (399)
Q Consensus 212 ~R~~G~CPltPeEvgl~L~alGf~ 235 (399)
.+..|.. ++++|+..+|+.|||.
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCc
Confidence 4566776 9999999999999996
No 7
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}
Probab=18.29 E-value=27 Score=30.15 Aligned_cols=92 Identities=12% Similarity=0.205 Sum_probs=56.5
Q ss_pred hhcccccccchHHHHHHHHHHHHHHhcCCeEEEeccchhhhHhhhccCCCCChHHHHHHHHHHhhCcchhhccCChHhhh
Q 015828 134 RVNFSALRFTSQIEDLGKRVIKLLRQNGPFLVLHLRYEMDMLAFSGCTQGCNKEEVEELTRMRYAYPWWKEKIINSDLKR 213 (399)
Q Consensus 134 r~~f~ALrF~~~I~~lg~~lV~Rmr~~gpfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R 213 (399)
.++.++|...++.+++-+++.+.|+..|.++....-...++..+ ...+....+...+.. |+.. + ....+
T Consensus 98 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~-~-~~~~~ 166 (281)
T d2gh1a1 98 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASY--LLDGEKQSEFIQLGV-------LQKL-F-ESDTQ 166 (281)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSE--EETTSCHHHHCCHHH-------HHHH-H-HHHHH
T ss_pred EEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhh--ccCchhhhhhhhHHH-------HHHH-H-HHHHH
Confidence 34556777777888888888888888898888765554454444 222222222211111 1111 0 11234
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCC
Q 015828 214 KDGLCPLTPEETALILRALDIDP 236 (399)
Q Consensus 214 ~~G~CPltPeEvgl~L~alGf~~ 236 (399)
..|..|....++..+|+.+||.+
T Consensus 167 ~~~~~~~i~~~l~~~l~eaGf~~ 189 (281)
T d2gh1a1 167 RNGKDGNIGMKIPIYLSELGVKN 189 (281)
T ss_dssp TTCCCTTGGGTHHHHHHHTTCEE
T ss_pred HcCCCCCHHHHHHHHHHHcCCeE
Confidence 56777777788999999999984
No 8
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.56 E-value=7.7 Score=26.04 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=17.3
Q ss_pred CHHHHH--HHHHHcCCCCCce--EEEEecc
Q 015828 221 TPEETA--LILRALDIDPNMQ--IYIAAGE 246 (399)
Q Consensus 221 tPeEvg--l~L~alGf~~~T~--IYlA~g~ 246 (399)
||+|.. .=|.+|||+++.. +|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 445544 3478999998864 5776654
No 9
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.17 E-value=18 Score=25.03 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=25.1
Q ss_pred cccchHHHHhCCCccccccCCChhchhhhcccchhhhhhhhhh
Q 015828 251 ERRMANLAKAYPKLVRKETLLEPSDLRFFQNHSSQMAALDYLV 293 (399)
Q Consensus 251 ~~~l~~L~~~fPnl~tKe~L~~~eeL~~f~~~~s~~AAlDy~V 293 (399)
+..++.|++|||++- ++-+ ..=|. .+.++..+|||-..
T Consensus 13 ~e~~~~Lk~MFP~~D-~~VI--~~VL~--a~~G~vd~aidaLL 50 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDMD-PSLI--EDVCI--AKKSRIEPCVDALL 50 (54)
T ss_dssp HHHHHHHHHHCTTSC-HHHH--HHHHS--CSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHH--HHHHH--HcCCCHHHHHHHHH
Confidence 346889999999885 3222 23343 66777888888643
No 10
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.55 E-value=42 Score=26.55 Aligned_cols=40 Identities=15% Similarity=0.342 Sum_probs=30.4
Q ss_pred HHHHHcCCCCCceEEEEeccccCccccchHHHHhCCCccccccCC
Q 015828 227 LILRALDIDPNMQIYIAAGEIYGGERRMANLAKAYPKLVRKETLL 271 (399)
Q Consensus 227 l~L~alGf~~~T~IYlA~g~iygg~~~l~~L~~~fPnl~tKe~L~ 271 (399)
-+|..+ ..++.||+...+ |+.....|+++.|.-+++++|=
T Consensus 94 Q~l~E~--~~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~ 133 (136)
T d2fr5a1 94 QVMREF--GTDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQ 133 (136)
T ss_dssp HHHHHT--CSSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGT
T ss_pred HHHHhh--CCCceEEEECCC---CCEEEeEHHHhCcCCCChHHhC
Confidence 455554 468899998776 4556778999999999888873
Done!