BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015830
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VE3|A Chain A, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE3|B Chain B, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE4|A Chain A, Substrate Free Cyanobacterial Cyp120a1
pdb|2VE4|B Chain B, Substrate Free Cyanobacterial Cyp120a1
Length = 444
Score = 137 bits (346), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 174/364 (47%), Gaps = 22/364 (6%)
Query: 36 LPLPPGHVSWPFKYFETLDYLKKARTNTIHKFIAERVQKYKTKCFKTCHIGQNMVFLTSA 95
LP+PPG P+ ETL++L F +R Q++ FKT G+N++F++ A
Sbjct: 11 LPIPPGDFGLPW-LGETLNFLNDG------DFGKKRQQQFG-PIFKTRLFGKNVIFISGA 62
Query: 96 EGNKFLFSNDYKLVRSWWPVTFLKVFENAGEEITVEEVIRARKQFLSFFNEPDALARHVA 155
N+FLF+ + + ++ WP++ + + E+ R+R++ L P L ++
Sbjct: 63 LANRFLFTKEQETFQATWPLSTRILLGPNALATQMGEIHRSRRKILYQAFLPRTLDSYLP 122
Query: 156 ITDQVVQDHFKCYWDGSKQVGVYPLARKLTFDVSCRLLADIQDREILDESLPLMGNVVRA 215
D +VQ + + W + +V YP R++TFDV+ L + + + P ++
Sbjct: 123 KMDGIVQGYLE-QWGKANEVIWYPQLRRMTFDVAATLFMGEKVSQN-PQLFPWFETYIQG 180
Query: 216 FFAFPINFPGTILNRAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYK 275
F+ PI P T+ ++ ++ L IIK R ++ D L LL
Sbjct: 181 LFSLPIPLPNTLFGKSQRARALLLAELEKIIKAR------QQQPPSEEDALGILLAARDD 234
Query: 276 EGRDIDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPG 335
+ + L ++ LL A ++ + ++S L + +I E+VR+EQ ++ S
Sbjct: 235 NNQPLSLPELKDQILLLLFAGHETLTSALSSFCLLLGQHSDIRERVRQEQNKLQLS---- 290
Query: 336 EHMSMEDVKKMKFSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKGWKVIIHFNISF 395
+ ++ E +KKM + VL E LRL P G FRE + D ++GF PKGW ++ + IS
Sbjct: 291 QELTAETLKKMPYLDQVLQEVLRLIPPVGGGFRELIQDCQFQGFHFPKGW--LVSYQISQ 348
Query: 396 TSVN 399
T +
Sbjct: 349 THAD 352
>pdb|3LD6|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C Complex With Ketoconazole
pdb|3LD6|B Chain B, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C Complex With Ketoconazole
pdb|3JUS|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(Cyp51) In Complex With Econazole
pdb|3JUS|B Chain B, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(Cyp51) In Complex With Econazole
pdb|3JUV|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C
Length = 461
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/361 (22%), Positives = 144/361 (39%), Gaps = 20/361 (5%)
Query: 38 LPPGHVSWPFKYFETLDYLKKART--NTIHKFIAERVQKYKTKCFKTCHIGQNMVFLTSA 95
LP G S P+ F + +L A + +F+ +KY F +G+ +L +
Sbjct: 6 LPAGVKSPPY-IFSPIPFLGHAIAFGKSPIEFLENAYEKYG-PVFSFTMVGKTFTYLLGS 63
Query: 96 EGNKFLFS--NDYKLVRSWWPVTFLKVFENAGEEITVEEVIRARKQFLSFFNEPDALARH 153
+ LF+ N+ + VF V +K+ L +H
Sbjct: 64 DAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFKQH 123
Query: 154 VAITDQVVQDHFKCYWDGSKQVGVYPLARKLTFDVSCRLLADIQDREILDESLP-----L 208
V+I ++ +++F+ W S + V+ +L + L + R L+E + L
Sbjct: 124 VSIIEKETKEYFES-WGESGEKNVFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADL 182
Query: 209 MGNVVRAFFAFPINFPGTILNRAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSR 268
G A + P P R ++ R ++ IF I++RR ++ ++ +D+L
Sbjct: 183 DGGFSHAAWLLPGWLPLPSFRRRDRAHREIKDIFYKAIQKRR------QSQEKIDDILQT 236
Query: 269 LLVENYKEGRDIDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEI 328
LL YK+GR + D +A L+ LL A S T + LA + +K EQ +
Sbjct: 237 LLDATYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTV 296
Query: 329 AKSKAPGEHMSMEDVKKMKFSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKGWKVI 388
P ++ + +K + + E+LRL P R A G+ IP G +V
Sbjct: 297 CGENLP--PLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTVAGYTIPPGHQVC 354
Query: 389 I 389
+
Sbjct: 355 V 355
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
Bound
Length = 456
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 80/150 (53%), Gaps = 8/150 (5%)
Query: 233 KSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNLVSL 292
+S R LR++ D ++ RR L K+ + D+L+++L +EG DD L N V+
Sbjct: 197 ESIRFLRQVGRDWVQRRREAL--KRGEEVPADILTQIL--KAEEGAQ-DDEGLLDNFVTF 251
Query: 293 LSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNV 352
A ++ + + V L+ +PEI +++ E E+ SK ++ ED+ ++++ V
Sbjct: 252 FIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVIGSK---RYLDFEDLGRLQYLSQV 308
Query: 353 LSESLRLEAPASGTFREALDDFNYEGFLIP 382
L ESLRL PA GTFR ++ +G +P
Sbjct: 309 LKESLRLYPPAWGTFRLLEEETLIDGVRVP 338
>pdb|3DBG|A Chain A, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3DBG|B Chain B, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3EL3|A Chain A, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
pdb|3EL3|B Chain B, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
Length = 467
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 225 GTILNRAIKSSRRLRKIFVD-------IIKERRGDLLEKKNLDQRNDVLSRLLVENYKEG 277
G + + ++RR D II ERR + + +D+L+ LL G
Sbjct: 203 GPLYRLPLPANRRFNDALADLHLLVDEIIAERRA------SGQKPDDLLTALLEAKDDNG 256
Query: 278 RDIDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEH 337
I + + +V++L+ + + TI +++ LA+ PE +++R E +E G
Sbjct: 257 DPIGEQEIHDQVVAILTPGSETIASTIMWLLQALADHPEHADRIRDE-VEAVTG---GRP 312
Query: 338 MSMEDVKKMKFSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKGWKVI 388
++ EDV+K++ + NV+ E++RL R A+ + G+ IP G +I
Sbjct: 313 VAFEDVRKLRHTGNVIVEAMRLRPAVWVLTRRAVAESELGGYRIPAGADII 363
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 223 FPGTILNRAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRDIDD 282
FP + N KS +R+++ ++ ++ R D L+ +D +N + + + + D
Sbjct: 221 FPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLM-IDSQNS-------KETESHKALSD 272
Query: 283 VFLAKNLVSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMSMED 342
+ L + + A Y+ S ++ I+ LA P++ +K+++E + +KAP + +
Sbjct: 273 LELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTY---DT 329
Query: 343 VKKMKFSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKGWKVII 389
V +M++ V++E+LRL A R D G IPKG V+I
Sbjct: 330 VLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMI 376
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 223 FPGTILNRAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRDIDD 282
FP + N KS +R+++ ++ ++ R D L+ +D +N + + + + D
Sbjct: 220 FPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLM-IDSQNS-------KETESHKALSD 271
Query: 283 VFLAKNLVSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMSMED 342
+ L + + A Y+ S ++ I+ LA P++ +K+++E + +KAP + +
Sbjct: 272 LELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTY---DT 328
Query: 343 VKKMKFSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKGWKVII 389
V +M++ V++E+LRL A R D G IPKG V+I
Sbjct: 329 VLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMI 375
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 223 FPGTILNRAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRDIDD 282
FP + N KS +R+++ ++ ++ R D L+ +D +N + + + + D
Sbjct: 219 FPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLM-IDSQNS-------KETESHKALSD 270
Query: 283 VFLAKNLVSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMSMED 342
+ L + + A Y+ S ++ I+ LA P++ +K+++E + +KAP + +
Sbjct: 271 LELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTY---DT 327
Query: 343 VKKMKFSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKGWKVII 389
V +M++ V++E+LRL A R D G IPKG V+I
Sbjct: 328 VLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMI 374
>pdb|3EQM|A Chain A, Crystal Structure Of Human Placental Aromatase Cytochrome
P450 In Complex With Androstenedione
pdb|3S79|A Chain A, Human Placental Aromatase Cytochrome P450 (Cyp19a1)
Refined At 2.75 Angstrom
pdb|3S7S|A Chain A, Crystal Structure Of Human Placental Aromatase Complexed
With Breast Cancer Drug Exemestane
pdb|4GL5|A Chain A, Structure Of Human Placental Aromatase Complexed With
Designed Inhibitor Hddg029 (Compound 4)
pdb|4GL7|A Chain A, Structure Of Human Placental Aromatase Complexed With
Designed Inhibitor Hddg046 (Compound 5)
Length = 503
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 125/267 (46%), Gaps = 21/267 (7%)
Query: 136 ARKQFLSFFNEPDALARHVAITDQVVQDHFKCYWDGSKQVG---VYPLARKLTFDVSCRL 192
R F+ + P L R V + + ++ H + + + G V L R++ D S L
Sbjct: 144 TRPFFMKALSGP-GLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVMLDTSNTL 202
Query: 193 LADIQDREILDES---LPLMG--NVVRAFFAFP-INFPGTILNRAI-KSSRRLRKIFVDI 245
I LDES + + G + +A P I F + L + KS + L+ +
Sbjct: 203 FLRIP----LDESAIVVKIQGYFDAWQALLIKPDIFFKISWLYKKYEKSVKDLKDAIEVL 258
Query: 246 IKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNLVSLLSAAYDNPSVTIT 305
I E+R + ++ L++ D + L++ K G D+ + + ++ +L AA D SV++
Sbjct: 259 IAEKRRRISTEEKLEECMDFATELILAE-KRG-DLTRENVNQCILEMLIAAPDTMSVSLF 316
Query: 306 SIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRLEAPASG 365
++ +A+ P + E + KE + + + ++D++K+K N + ES+R +
Sbjct: 317 FMLFLIAKHPNVEEAIIKEIQTVIGER----DIKIDDIQKLKVMENFIYESMRYQPVVDL 372
Query: 366 TFREALDDFNYEGFLIPKGWKVIIHFN 392
R+AL+D +G+ + KG +I++
Sbjct: 373 VMRKALEDDVIDGYPVKKGTNIILNIG 399
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 25/210 (11%)
Query: 200 EILDESLPLMGNV-VRAFFAFPI---NFPGTILNRAIKSSRRLRKIFVDIIKERRGDLLE 255
E L+E++ ++ + ++ + FP FPGT N+ +K+ ++ ++ +KE + E
Sbjct: 180 EKLNENIEILSSPWIQVYNNFPALLDYFPGT-HNKLLKNVAFMKSYILEKVKEHQ----E 234
Query: 256 KKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNL----VSLLSAAYDNPSVTITSIVKNL 311
+++ D + L++ KE + F ++L V L A + S T+ + L
Sbjct: 235 SMDMNNPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLL 294
Query: 312 AERPEIYEKVRKEQIE--IAKSKAPGEHMSMEDVKKMKFSMNVLSESLRLEAPASGTFRE 369
+ PE+ KV+ E+IE I ++++P M+D M ++ V+ E R +
Sbjct: 295 LKHPEVTAKVQ-EEIERVIGRNRSP----CMQDRSHMPYTDAVVHEVQRYIDLLPTSLPH 349
Query: 370 ALD-DFNYEGFLIPKGWKVIIHFNISFTSV 398
A+ D + +LIPKG ++ IS TSV
Sbjct: 350 AVTCDIKFRNYLIPKGTTIL----ISLTSV 375
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 223 FPGTILNRAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRDIDD 282
FPGT N+ +K+ ++ ++ +KE + E +++ D + L++ KE +
Sbjct: 209 FPGT-HNKLLKNVAFMKSYILEKVKEHQ----ESMDMNNPQDFIDCFLMKMEKEKHNQPS 263
Query: 283 VFLAKNL----VSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIE--IAKSKAPGE 336
F ++L V L A + S T+ + L + PE+ KV+ E+IE I ++++P
Sbjct: 264 EFTIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQ-EEIERVIGRNRSP-- 320
Query: 337 HMSMEDVKKMKFSMNVLSESLRLEAPASGTFREALD-DFNYEGFLIPKGWKVIIHFNISF 395
M+D M ++ V+ E R + A+ D + +LIPKG ++ IS
Sbjct: 321 --CMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKGTTIL----ISL 374
Query: 396 TSV 398
TSV
Sbjct: 375 TSV 377
>pdb|3CBD|A Chain A, Directed Evolution Of Cytochrome P450 Bm3, To Octane
Monoxygenase 139-3
pdb|3CBD|B Chain B, Directed Evolution Of Cytochrome P450 Bm3, To Octane
Monoxygenase 139-3
Length = 455
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 69/127 (54%), Gaps = 9/127 (7%)
Query: 240 KIFVDIIKERRGDLLEKKNLDQRNDVLSRLL-VENYKEGRDIDDVFLAKNLVSLLSAAYD 298
K+ D++ + D K + +Q +D+L+++L ++ + G +DD ++ +++ L A ++
Sbjct: 210 KVMNDLVDKIIAD--RKASGEQSDDLLTQMLNGKDPETGEPLDDGNISYQIITFLIAGHE 267
Query: 299 NPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNVLSESLR 358
S ++ + L + P + +KV +E + P S + VK++K+ VL+E+LR
Sbjct: 268 TTSGLLSFALYFLVKNPHVLQKVAEEATRVLVDPVP----SYKQVKQLKYVGMVLNEALR 323
Query: 359 L--EAPA 363
L APA
Sbjct: 324 LWPTAPA 330
>pdb|2X2N|A Chain A, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|B Chain B, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|C Chain C, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|D Chain D, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
Length = 475
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 230 RAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNL 289
R ++ L+KI +II R+ + K + +D+LS LL Y++G + + +
Sbjct: 214 RCHEARTELQKILSEIIIARKAAAVNKDS--STSDLLSGLLSAVYRDGTPMSLHEVCGMI 271
Query: 290 VSLLSAAYDNPSVTITSIVKNLAERPEI--YEKVRKEQIEIAKSKAPGEHMSMEDVKKMK 347
V+ + A S+T T + +L + E +RKE E P + + +M
Sbjct: 272 VAAMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEF-----PAQLNYNNVMDEMP 326
Query: 348 FSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKG 384
F+ ES+R + P R+ + D +++PKG
Sbjct: 327 FAERCARESIRRDPPLLMLMRKVMADVKVGSYVVPKG 363
>pdb|2WV2|A Chain A, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Brucei In Complex With Fluconazole
Length = 475
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 230 RAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNL 289
R ++ L+KI +II R+ + + K + +D+LS LL Y++G + + +
Sbjct: 214 RCHEARTELQKILSEIIIARKEEEVNKDS--STSDLLSGLLSAVYRDGTPMSLHEVCGMI 271
Query: 290 VSLLSAAYDNPSVTITSIVKNLAERPEI--YEKVRKEQIEIAKSKAPGEHMSMEDVKKMK 347
V+ + A S+T T + +L + E +RKE E P + + +M
Sbjct: 272 VAAMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEF-----PAQLNYNNVMDEMP 326
Query: 348 FSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKG 384
F+ ES+R + P R+ + D +++PKG
Sbjct: 327 FAERCARESIRRDPPLLMLMRKVMADVKVGSYVVPKG 363
>pdb|3GW9|A Chain A, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
pdb|3GW9|B Chain B, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
pdb|3GW9|C Chain C, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
pdb|3GW9|D Chain D, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
Length = 450
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 230 RAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNL 289
R ++ L+KI +II R+ + + K + +D+LS LL Y++G + + +
Sbjct: 201 RCHEARTELQKILSEIIIARKEEEVNKDS--STSDLLSGLLSAVYRDGTPMSLHEVCGMI 258
Query: 290 VSLLSAAYDNPSVTITSIVKNLAERPEI--YEKVRKEQIEIAKSKAPGEHMSMEDVKKMK 347
V+ + A S+T T + +L + E +RKE E P + + +M
Sbjct: 259 VAAMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEF-----PAQLNYNNVMDEMP 313
Query: 348 FSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKG 384
F+ ES+R + P R+ + D +++PKG
Sbjct: 314 FAERCARESIRRDPPLLMLMRKVMADVKVGSYVVPKG 350
>pdb|3TIK|A Chain A, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
pdb|3TIK|B Chain B, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
pdb|3TIK|C Chain C, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
pdb|3TIK|D Chain D, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
Length = 454
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 230 RAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNL 289
R ++ L+KI +II R+ + + K + +D+LS LL Y++G + + +
Sbjct: 201 RCHEARTELQKILSEIIIARKEEEVNKDS--STSDLLSGLLSAVYRDGTPMSLHEVCGMI 258
Query: 290 VSLLSAAYDNPSVTITSIVKNLAERPEI--YEKVRKEQIEIAKSKAPGEHMSMEDVKKMK 347
V+ + A S+T T + +L + E +RKE E P + + +M
Sbjct: 259 VAAMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEF-----PAQLNYNNVMDEMP 313
Query: 348 FSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKG 384
F+ ES+R + P R+ + D +++PKG
Sbjct: 314 FAERCARESIRRDPPLLMLMRKVMADVKVGSYVVPKG 350
>pdb|3G1Q|A Chain A, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
pdb|3G1Q|B Chain B, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
pdb|3G1Q|C Chain C, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
pdb|3G1Q|D Chain D, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
Length = 450
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 230 RAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNL 289
R ++ L+KI +II R+ + + K + +D+LS LL Y++G + + +
Sbjct: 202 RCHEARTELQKILSEIIIARKEEEVNKDS--STSDLLSGLLSAVYRDGTPMSLHEVCGMI 259
Query: 290 VSLLSAAYDNPSVTITSIVKNLAERPEI--YEKVRKEQIEIAKSKAPGEHMSMEDVKKMK 347
V+ + A S+T T + +L + E +RKE E P + + +M
Sbjct: 260 VAAMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEF-----PAQLNYNNVMDEMP 314
Query: 348 FSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKG 384
F+ ES+R + P R+ + D +++PKG
Sbjct: 315 FAERCARESIRRDPPLLMLMRKVMADVKVGSYVVPKG 351
>pdb|3P99|A Chain A, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
pdb|3P99|B Chain B, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
pdb|3P99|C Chain C, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
pdb|3P99|D Chain D, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
Length = 453
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 230 RAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNL 289
R ++ L+KI +II R+ + + K + +D+LS LL Y++G + + +
Sbjct: 200 RCHEARTELQKILSEIIIARKEEEVNKDS--STSDLLSGLLSAVYRDGTPMSLHEVCGMI 257
Query: 290 VSLLSAAYDNPSVTITSIVKNLAERPEI--YEKVRKEQIEIAKSKAPGEHMSMEDVKKMK 347
V+ + A S+T T + +L + E +RKE E P + + +M
Sbjct: 258 VAAMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEF-----PAQLNYNNVMDEMP 312
Query: 348 FSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKG 384
F+ ES+R + P R+ + D +++PKG
Sbjct: 313 FAERCARESIRRDPPLLMLMRKVMADVKVGSYVVPKG 349
>pdb|1CPT|A Chain A, Crystal Structure And Refinement Of Cytochrome P450-Terp
At 2.3 Angstroms Resolution
Length = 428
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 95/234 (40%), Gaps = 40/234 (17%)
Query: 173 KQVGVYPLARKLTFDVSCRLLAD----------IQDREILDESLPLMGNVVRAFFAFPIN 222
+++ + R L FD C + D + + ++ PLM + + FF ++
Sbjct: 134 RRIAQASVQRLLDFDGECDFMTDCALYYPLHVVMTALGVPEDDEPLMLKLTQDFFG--VH 191
Query: 223 FP-----GTILNRAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEG 277
P A +++RR + G +++++ ++DV+S LL + +G
Sbjct: 192 EPDEQAVAAPRQSADEAARRFHETIATFYDYFNGFTVDRRSC-PKDDVMS-LLANSKLDG 249
Query: 278 RDIDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEH 337
IDD ++ V++ +A +D S + + L+ P EQ+ +AKS
Sbjct: 250 NYIDDKYINAYYVAIATAGHDTTSSSSGGAIIGLSRNP--------EQLALAKSDP---- 297
Query: 338 MSMEDVKKMKFSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKGWKVIIHF 391
++ E++R AP R AL D G I +G ++++ +
Sbjct: 298 ---------ALIPRLVDEAVRWTAPVKSFMRTALADTEVRGQNIKRGDRIMLSY 342
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 13/182 (7%)
Query: 211 NVVRAFFAFPINFPGTILNRAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLL 270
V F F +FPGT +R I + + F+ E+ L+ N D + L
Sbjct: 196 QVFELFSGFLKHFPGT--HRQIYRNLQEINTFIGQSVEKHRATLDPSN---PRDFIDVYL 250
Query: 271 VENYKEGRDIDDVFLAKNLV----SLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQI 326
+ K+ D F +NL+ SL A + S T+ + + P + E+V+KE
Sbjct: 251 LRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIE 310
Query: 327 EIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRL-EAPASGTFREALDDFNYEGFLIPKGW 385
++ S P +++D KM ++ V+ E RL + G D + G++IPK
Sbjct: 311 QVIGSHRP---PALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNT 367
Query: 386 KV 387
+V
Sbjct: 368 EV 369
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 222 NFPGTILNRAIKSSRRLRKIFVDI---IKERRGDLLEKKNLDQRNDVLSRLLVENYKEGR 278
NFP + L+ S R++ K ++ + ER + + + + D+ LLVE KE
Sbjct: 199 NFP-SFLHYLPGSHRKVIKNVAEVKEYVSERVKEHHQSLDPNCPRDLTDCLLVEMEKEKH 257
Query: 279 DIDDVF----LAKNLVSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAP 334
+ ++ + + L A + S T+ + L + PEI EK+ +E I + P
Sbjct: 258 SAERLYTMDGITVTVADLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEE---IDRVIGP 314
Query: 335 GEHMSMEDVKKMKFSMNVLSESLR-LEAPASGTFREALDDFNYEGFLIPKGWKVI 388
+++D ++M + V+ E R + S EA D + G+LIPKG V+
Sbjct: 315 SRIPAIKDRQEMPYMDAVVHEIQRFITLVPSNLPHEATRDTIFRGYLIPKGTVVV 369
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 13/182 (7%)
Query: 211 NVVRAFFAFPINFPGTILNRAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLL 270
V F F FPGT +R I + + F+ E+ L+ N D + L
Sbjct: 196 QVFELFSGFLKYFPGT--HRQIYRNLQEINTFIGQSVEKHRATLDPSN---PRDFIDVYL 250
Query: 271 VENYKEGRDIDDVFLAKNLV----SLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQI 326
+ K+ D F +NL+ SL +A + S T+ + + P + E+V+KE
Sbjct: 251 LRMEKDKSDPSSEFHHQNLILTVLSLFAAGTETTSTTLRYGFLLMLKYPHVTERVQKEIE 310
Query: 327 EIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRL-EAPASGTFREALDDFNYEGFLIPKGW 385
++ S P +++D KM ++ V+ E RL + G D + G++IPK
Sbjct: 311 QVIGSHRP---PALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNT 367
Query: 386 KV 387
+V
Sbjct: 368 EV 369
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 13/182 (7%)
Query: 211 NVVRAFFAFPINFPGTILNRAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLL 270
V F F FPGT +R I + + F+ E+ L+ N D + L
Sbjct: 196 QVFELFSGFLKYFPGT--HRQIYRNLQEINTFIGQSVEKHRATLDPSN---PRDFIDVYL 250
Query: 271 VENYKEGRDIDDVFLAKNLV----SLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQI 326
+ K+ D F +NL+ SL A + S T+ + + P + E+V+KE
Sbjct: 251 LRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIE 310
Query: 327 EIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRL-EAPASGTFREALDDFNYEGFLIPKGW 385
++ S P +++D KM ++ V+ E RL + G D + G++IPK
Sbjct: 311 QVIGSHRP---PALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNT 367
Query: 386 KV 387
+V
Sbjct: 368 EV 369
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 13/182 (7%)
Query: 211 NVVRAFFAFPINFPGTILNRAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLL 270
V F F FPGT +R I + + F+ E+ L+ N D + L
Sbjct: 196 QVFELFSGFLKYFPGT--HRQIYRNLQEINTFIGQSVEKHRATLDPSN---PRDFIDVYL 250
Query: 271 VENYKEGRDIDDVFLAKNLV----SLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQI 326
+ K+ D F +NL+ SL A + S T+ + + P + E+V+KE
Sbjct: 251 LRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIE 310
Query: 327 EIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRL-EAPASGTFREALDDFNYEGFLIPKGW 385
++ S P +++D KM ++ V+ E RL + G D + G++IPK
Sbjct: 311 QVIGSHRP---PALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNT 367
Query: 386 KV 387
+V
Sbjct: 368 EV 369
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 13/182 (7%)
Query: 211 NVVRAFFAFPINFPGTILNRAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLL 270
V F F FPGT +R I + + F+ E+ L+ N D + L
Sbjct: 196 QVFELFSGFLKYFPGT--HRQIYRNLQEINTFIGQSVEKHRATLDPSN---PRDFIDVYL 250
Query: 271 VENYKEGRDIDDVFLAKNLV----SLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQI 326
+ K+ D F +NL+ SL A + S T+ + + P + E+V+KE
Sbjct: 251 LRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIE 310
Query: 327 EIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRL-EAPASGTFREALDDFNYEGFLIPKGW 385
++ S P +++D KM ++ V+ E RL + G D + G++IPK
Sbjct: 311 QVIGSHRP---PALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNT 367
Query: 386 KV 387
+V
Sbjct: 368 EV 369
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 19/155 (12%)
Query: 253 LLEKKNLDQRNDVLSRLLVENY----KEGR-DIDDVFLAKNLV----SLLSAAYDNPSVT 303
L+EK +++ R L + V+ Y +G+ D F +NL+ L+ A + +
Sbjct: 234 LIEKASVN-RKPQLPQHFVDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTETTTNV 292
Query: 304 ITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRL-EAP 362
+ + +A P I +V+KE I P S +D KM ++ VL E LR
Sbjct: 293 LRWAILFMALYPNIQGQVQKE---IDLIMGPNGKPSWDDKCKMPYTEAVLHEVLRFCNIV 349
Query: 363 ASGTFREALDDFNYEGFLIPKGWKVI-----IHFN 392
G F +D G+ IPKG VI +HF+
Sbjct: 350 PLGIFHATSEDAVVRGYSIPKGTTVITNLYSVHFD 384
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 19/155 (12%)
Query: 253 LLEKKNLDQRNDVLSRLLVENY----KEGR-DIDDVFLAKNLV----SLLSAAYDNPSVT 303
L+EK +++ R L + V+ Y +G+ D F +NL+ L+ A + +
Sbjct: 234 LIEKASVN-RKPQLPQHFVDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTETTTNV 292
Query: 304 ITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRL-EAP 362
+ + +A P I +V+KE I P S +D KM ++ VL E LR
Sbjct: 293 LRWAILFMALYPNIQGQVQKE---IDLIMGPNGKPSWDDKCKMPYTEAVLHEVLRFCNIV 349
Query: 363 ASGTFREALDDFNYEGFLIPKGWKVI-----IHFN 392
G F +D G+ IPKG VI +HF+
Sbjct: 350 PLGIFHATSEDAVVRGYSIPKGTTVITNLYSVHFD 384
>pdb|1IZO|A Chain A, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|1IZO|B Chain B, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|1IZO|C Chain C, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|2ZQX|A Chain A, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQX|B Chain B, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQX|C Chain C, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQJ|A Chain A, Substrate-Free Form Of Cytochrome P450bsbeta
pdb|2ZQJ|B Chain B, Substrate-Free Form Of Cytochrome P450bsbeta
pdb|2ZQJ|C Chain C, Substrate-Free Form Of Cytochrome P450bsbeta
Length = 417
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 98/239 (41%), Gaps = 33/239 (13%)
Query: 67 FIAERVQKYKTKCFKTCHIGQNMVFLTSAEGNKFLFSNDYKLVRSWWPVTFLKVF--ENA 124
FI R ++Y + F+ +G+N + +T AE K + D ++ P K NA
Sbjct: 24 FIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGVNA 83
Query: 125 GEEITVEEVIRARKQFLSFFNEPDALARHVAITDQVVQDHFKCY---WDGSKQVGVYPLA 181
+ + I + FLS P H +++ + +K W+ + +V ++ A
Sbjct: 84 IQGMDGSAHIHRKMLFLSLMTPP-----HQKRLAELMTEEWKAAVTRWEKADEVVLFEEA 138
Query: 182 RKLTFDVSCRL----LADIQDREILDESLPLMGNVVRAFFAFPINFPGTILNRAIKSSR- 236
+++ V+C L + + +E D+ + ++V AF G + R K R
Sbjct: 139 KEILCRVACYWAGVPLKETEVKERADDFI----DMVDAF--------GAVGPRHWKGRRA 186
Query: 237 --RLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNLVSLL 293
R + +I++ R LL+ + L + ++G +D A L+++L
Sbjct: 187 RPRAEEWIEVMIEDARAGLLKTTS----GTALHEMAFHTQEDGSQLDSRMAAIELINVL 241
>pdb|3L4D|A Chain A, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Leishmania Infantum In Complex With Fluconazole
pdb|3L4D|B Chain B, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Leishmania Infantum In Complex With Fluconazole
pdb|3L4D|C Chain C, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Leishmania Infantum In Complex With Fluconazole
pdb|3L4D|D Chain D, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Leishmania Infantum In Complex With Fluconazole
Length = 453
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 74/170 (43%), Gaps = 7/170 (4%)
Query: 216 FFAFPINFPGTILNRAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYK 275
F + + P R + L+ I +II R + +K +D+L+ LL Y+
Sbjct: 186 FLPWILKLPLPQSYRCRDARAELQDILSEIIIAREKEEAQKDT--NTSDLLAGLLGAVYR 243
Query: 276 EGRDIDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPG 335
+G + + +V+ + A ++T T + +L + P + K EI + A
Sbjct: 244 DGTRMSQHEVCGMIVAAMFAGQHTSTITTTWSLLHLMD-PRNKRHLAKLHQEIDEFPA-- 300
Query: 336 EHMSMEDV-KKMKFSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKG 384
++ ++V ++M F+ ES+R + P R+ L +++P+G
Sbjct: 301 -QLNYDNVMEEMPFAEQCARESIRRDPPLVMLMRKVLKPVQVGKYVVPEG 349
>pdb|4APY|A Chain A, Ethylene Glycol-bound Form Of P450 Cyp125a3 From
Mycobacterium Smegmatis
Length = 433
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 24/139 (17%)
Query: 253 LLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLA 312
+ E++ ++ D++++L +E +G + D +V L A + +IT + A
Sbjct: 210 MAEERAVNPTEDIVTKL-IEADIDGEKLSDDEFGFFVVMLAVAGNETTRNSITHGMIAFA 268
Query: 313 ERPEIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRLEAPASGTFREALD 372
+ P+ +E +KE+ E A E +R P S R AL+
Sbjct: 269 QNPDQWELYKKERPETAAD-----------------------EIVRWATPVSAFQRTALE 305
Query: 373 DFNYEGFLIPKGWKVIIHF 391
D G I KG +V++ +
Sbjct: 306 DVELGGVQIKKGQRVVMSY 324
>pdb|3ABA|A Chain A, Crystal Structure Of Cyp105p1 In Complex With Filipin I
Length = 403
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 31/158 (19%)
Query: 234 SSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNLVSLL 293
+ RL + +++ERR + +D++S L+ +G +DD+FL +LL
Sbjct: 185 AGMRLGGLLYQLVQERRAN--------PGDDLISALITTEDPDGV-VDDMFLMNAAGTLL 235
Query: 294 SAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNVL 353
AA+D + I L + P+ +R++ + N +
Sbjct: 236 IAAHDTTACMIGLGTALLLDSPDQLALLREDPSLVG---------------------NAV 274
Query: 354 SESLR-LEAPASGTFREALDDFNYEGFLIPKGWKVIIH 390
E LR L G R A D G I KG +V+ H
Sbjct: 275 EELLRYLTIGQFGGERVATRDVELGGVRIAKGEQVVAH 312
>pdb|3E5L|A Chain A, Crystal Structure Of Cyp105p1 H72a Mutant
Length = 403
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 31/158 (19%)
Query: 234 SSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNLVSLL 293
+ RL + +++ERR + +D++S L+ +G +DD+FL +LL
Sbjct: 185 AGMRLGGLLYQLVQERRAN--------PGDDLISALITTEDPDGV-VDDMFLMNAAGTLL 235
Query: 294 SAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNVL 353
AA+D + I L + P+ +R++ + N +
Sbjct: 236 IAAHDTTACMIGLGTALLLDSPDQLALLREDPSLVG---------------------NAV 274
Query: 354 SESLR-LEAPASGTFREALDDFNYEGFLIPKGWKVIIH 390
E LR L G R A D G I KG +V+ H
Sbjct: 275 EELLRYLTIGQFGGERVATRDVELGGVRIAKGEQVVAH 312
>pdb|2W0A|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor
N-[(1s)-2-Methyl-1-(Pyridin-4-Ylcarbamoyl)propyl]
Cyclohexanecarboxamide
Length = 455
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 133/345 (38%), Gaps = 35/345 (10%)
Query: 55 YLKKARTNTIHKFIAERVQKYKTKCFKTCHIGQNMVFLTSAEGNKFLF-SNDYKLVRSWW 113
+L++ RT+ I R + F+ G+ +V L+ + N+F F + D L ++
Sbjct: 18 HLEEFRTDPIGLMQRVRDELGDVGTFQLA--GKQVVLLSGSHANEFFFRAGDDDLDQAKA 75
Query: 114 PVTFLKVFENAGEEITVEEVIRARKQFLSFFN-EPDALARHVA-ITDQVVQDHFKCYWDG 171
+F GE + + RK+ L + + H A I DQV + W
Sbjct: 76 YPFMTPIF---GEAVVFDASPERRKEMLHNAALRGEQMKGHAATIEDQVRR--MIADWGE 130
Query: 172 SKQVGVYPLARKLTFDVSCRLLADIQDREILDESLPLMGNVVRAFFAF-----PINFPGT 226
+ ++ + +LT S L + R+ LD G + + P+ +
Sbjct: 131 AGEIDLLDFFAELTIYTSSACLIGKKFRDQLD------GRFAKLYHELERGTDPLAYVDP 184
Query: 227 ILNRAIKSSRR-------LRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRD 279
L I+S RR L + DI+ R + K+ DVL + E
Sbjct: 185 YL--PIESFRRRDEARNGLVALVADIMNGRIANPPTDKSDRDMLDVLIAVKAETGTPRFS 242
Query: 280 IDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMS 339
D++ +S++ A + S T + + L + Y V E E+ G +S
Sbjct: 243 ADEI--TGMFISMMFAGHHTSSGTASWTLIELMRHRDAYAAVIDELDELYGD---GRSVS 297
Query: 340 MEDVKKMKFSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKG 384
++++ NVL E+LRL P R A +F +G I +G
Sbjct: 298 FHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGHRIHEG 342
>pdb|3E5J|A Chain A, Crystal Structure Of Cyp105p1 Wild-type Ligand-free Form
pdb|3E5K|A Chain A, Crystal Structure Of Cyp105p1 Wild-Type 4-Phenylimidazole
Complex
Length = 403
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 31/158 (19%)
Query: 234 SSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNLVSLL 293
+ RL + +++ERR + +D++S L+ +G +DD+FL +LL
Sbjct: 185 AGMRLGGLLYQLVQERRAN--------PGDDLISALITTEDPDGV-VDDMFLMNAAGTLL 235
Query: 294 SAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNVL 353
AA+D + I L + P+ +R++ + N +
Sbjct: 236 IAAHDTTACMIGLGTALLLDSPDQLALLREDPSLVG---------------------NAV 274
Query: 354 SESLR-LEAPASGTFREALDDFNYEGFLIPKGWKVIIH 390
E LR L G R A D G I KG +V+ H
Sbjct: 275 EELLRYLTIGQFGGERVATRDVELGGVRIAKGEQVVAH 312
>pdb|1X8V|A Chain A, Estriol-Bound And Ligand-Free Structures Of Sterol
14alpha- Demethylase (Cyp51)
pdb|2BZ9|A Chain A, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2BZ9|B Chain B, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2CI0|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2CIB|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2VKU|A Chain A, 4,4'-Dihydroxybenzophenone Mimics Sterol Substrate In The
Binding Site Of Sterol 14alpha-Demethylase (Cyp51) In
The X-Ray Structure Of The Complex
pdb|2W09|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor Cis-4-
Methyl-N-[(1s)-3-(Methylsulfanyl)-1-(Pyridin-4-
Ylcarbamoyl)propyl]cyclohexanecarboxamide
pdb|2W0B|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor 3-{[(4-
Methylphenyl)sulfonyl]amino}propyl Pyridin-4-Ylcarbamate
Length = 455
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 133/345 (38%), Gaps = 35/345 (10%)
Query: 55 YLKKARTNTIHKFIAERVQKYKTKCFKTCHIGQNMVFLTSAEGNKFLF-SNDYKLVRSWW 113
+L++ RT+ I R + F+ G+ +V L+ + N+F F + D L ++
Sbjct: 18 HLEEFRTDPIGLMQRVRDELGDVGTFQLA--GKQVVLLSGSHANEFFFRAGDDDLDQAKA 75
Query: 114 PVTFLKVFENAGEEITVEEVIRARKQFLSFFN-EPDALARHVA-ITDQVVQDHFKCYWDG 171
+F GE + + RK+ L + + H A I DQV + W
Sbjct: 76 YPFMTPIF---GEGVVFDASPERRKEMLHNAALRGEQMKGHAATIEDQVRR--MIADWGE 130
Query: 172 SKQVGVYPLARKLTFDVSCRLLADIQDREILDESLPLMGNVVRAFFAF-----PINFPGT 226
+ ++ + +LT S L + R+ LD G + + P+ +
Sbjct: 131 AGEIDLLDFFAELTIYTSSACLIGKKFRDQLD------GRFAKLYHELERGTDPLAYVDP 184
Query: 227 ILNRAIKSSRR-------LRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRD 279
L I+S RR L + DI+ R + K+ DVL + E
Sbjct: 185 YL--PIESFRRRDEARNGLVALVADIMNGRIANPPTDKSDRDMLDVLIAVKAETGTPRFS 242
Query: 280 IDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMS 339
D++ +S++ A + S T + + L + Y V E E+ G +S
Sbjct: 243 ADEI--TGMFISMMFAGHHTSSGTASWTLIELMRHRDAYAAVIDELDELYGD---GRSVS 297
Query: 340 MEDVKKMKFSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKG 384
++++ NVL E+LRL P R A +F +G I +G
Sbjct: 298 FHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGHRIHEG 342
>pdb|3K1O|A Chain A, Crystal Structure Of Sterol 14-alpha Demethylase (cyp51)
From Trypanosoma Cruzi In Complex With A Potential
Antichagasic Drug, Posaconazole
pdb|3KSW|A Chain A, Crystal Structure Of Sterol 14alpha-demethylase (cyp51)
From Trypanosoma Cruzi In Complex With An Inhibitor Vnf
((4-(4-
Chlorophenyl)-n-[2-(1h-imidazol-1-yl)-1-
phenylethyl]benzamide)
Length = 458
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 74/169 (43%), Gaps = 5/169 (2%)
Query: 216 FFAFPINFPGTILNRAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYK 275
F + + P R ++ L+KI +II R + K N +D+L LL Y+
Sbjct: 185 FMPWLLRLPLPQSARCREARAELQKILGEIIVAREKEEASKDN--NTSDLLGGLLKAVYR 242
Query: 276 EGRDIDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPG 335
+G + + +V+ + A ++T + + +L P+ + + K EI + A
Sbjct: 243 DGTRMSLHEVCGMIVAAMFAGQHTSTITTSWSMLHLMH-PKNKKWLDKLHKEIDEFPAQL 301
Query: 336 EHMSMEDVKKMKFSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKG 384
+ ++ D +M F+ + ES+R + P R + +++PKG
Sbjct: 302 NYDNVMD--EMPFAERCVRESIRRDPPLLMVMRMVKAEVKVGSYVVPKG 348
>pdb|1EA1|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With Fluconazole
pdb|1E9X|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With 4-
Phenylimidazole
pdb|1H5Z|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Ferric Low-Spin State
Length = 455
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 133/345 (38%), Gaps = 35/345 (10%)
Query: 55 YLKKARTNTIHKFIAERVQKYKTKCFKTCHIGQNMVFLTSAEGNKFLF-SNDYKLVRSWW 113
+L++ RT+ I R + F+ G+ +V L+ + N+F F + D L ++
Sbjct: 18 HLEEFRTDPIGLMQRVRDECGDVGTFQLA--GKQVVLLSGSHANEFFFRAGDDDLDQAKA 75
Query: 114 PVTFLKVFENAGEEITVEEVIRARKQFLSFFN-EPDALARHVA-ITDQVVQDHFKCYWDG 171
+F GE + + RK+ L + + H A I DQV + W
Sbjct: 76 YPFMTPIF---GEGVVFDASPERRKEMLHNAALRGEQMKGHAATIEDQVRR--MIADWGE 130
Query: 172 SKQVGVYPLARKLTFDVSCRLLADIQDREILDESLPLMGNVVRAFFAF-----PINFPGT 226
+ ++ + +LT S L + R+ LD G + + P+ +
Sbjct: 131 AGEIDLLDFFAELTIYTSSACLIGKKFRDQLD------GRFAKLYHELERGTDPLAYVDP 184
Query: 227 ILNRAIKSSRR-------LRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRD 279
L I+S RR L + DI+ R + K+ DVL + E
Sbjct: 185 YL--PIESFRRRDEARNGLVALVADIMNGRIANPPTDKSDRDMLDVLIAVKAETGTPRFS 242
Query: 280 IDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMS 339
D++ +S++ A + S T + + L + Y V E E+ G +S
Sbjct: 243 ADEI--TGMFISMMFAGHHTSSGTASWTLIELMRHRDAYAAVIDELDELYGD---GRSVS 297
Query: 340 MEDVKKMKFSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKG 384
++++ NVL E+LRL P R A +F +G I +G
Sbjct: 298 FHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGHRIHEG 342
>pdb|2VRV|A Chain A, Structure Of Histidine Tagged Cytochrome P450 Eryk In
Complex With Inhibitor Clotrimazole (Clt)
pdb|2WIO|A Chain A, Structure Of The Histidine Tagged, Open Cytochrome P450
Eryk From S. Erythraea
Length = 431
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 256 KKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLAERP 315
++ D +D++SRL++ +GR +DD A +LL A + +V + +IV+ L E P
Sbjct: 223 ERRADPGDDLISRLVLAEV-DGRALDDEEAANFSTALLLAGHITTTVLLGNIVRTLDEHP 281
Query: 316 EIYEKVRKEQIEI 328
++ ++ I
Sbjct: 282 AHWDAAAEDPGRI 294
>pdb|3KHM|A Chain A, Crystal Structure Of Sterol 14alpha-Demethylase (Cyp51)
From Trypanosoma Cruzi In Complex With Inhibitor
Fluconazole
Length = 464
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 74/169 (43%), Gaps = 5/169 (2%)
Query: 216 FFAFPINFPGTILNRAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYK 275
F + + P R ++ L+KI +II R + K N +D+L LL Y+
Sbjct: 191 FMPWLLRLPLPQSARCREARAELQKILGEIIVAREKEEASKDN--NTSDLLGGLLKAVYR 248
Query: 276 EGRDIDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPG 335
+G + + +V+ + A ++T + + +L P+ + + K EI + A
Sbjct: 249 DGTRMSLHEVCGMIVAAMFAGQHTSTITTSWSMLHLMH-PKNKKWLDKLHKEIDEFPAQL 307
Query: 336 EHMSMEDVKKMKFSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKG 384
+ ++ D +M F+ + ES+R + P R + +++PKG
Sbjct: 308 NYDNVMD--EMPFAERCVRESIRRDPPLLMVMRMVKAEVKVGSYVVPKG 354
>pdb|2WUZ|A Chain A, X-Ray Structure Of Cyp51 From Trypanosoma Cruzi In Complex
With Fluconazole In Alternative Conformation
pdb|2WUZ|B Chain B, X-Ray Structure Of Cyp51 From Trypanosoma Cruzi In Complex
With Fluconazole In Alternative Conformation
pdb|2WX2|A Chain A, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Cruzi In Complex With Fluconazole
pdb|2WX2|B Chain B, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Cruzi In Complex With Fluconazole
Length = 473
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 74/169 (43%), Gaps = 5/169 (2%)
Query: 216 FFAFPINFPGTILNRAIKSSRRLRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYK 275
F + + P R ++ L+KI +II R + K N +D+L LL Y+
Sbjct: 200 FMPWLLRLPLPQSARCREARAELQKILGEIIVAREKEEASKDN--NTSDLLGGLLKAVYR 257
Query: 276 EGRDIDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPG 335
+G + + +V+ + A ++T + + +L P+ + + K EI + A
Sbjct: 258 DGTRMSLHEVCGMIVAAMFAGQHTSTITTSWSMLHLMH-PKNKKWLDKLHKEIDEFPAQL 316
Query: 336 EHMSMEDVKKMKFSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKG 384
+ ++ D +M F+ + ES+R + P R + +++PKG
Sbjct: 317 NYDNVMD--EMPFAERCVRESIRRDPPLLMVMRMVKAEVKVGSYVVPKG 363
>pdb|2JJN|A Chain A, Structure Of Closed Cytochrome P450 Eryk
pdb|2JJO|A Chain A, Structure Of Cytochrome P450 Eryk In Complex With Its
Natural Substrate Erd
pdb|2JJP|A Chain A, Structure Of Cytochrome P450 Eryk In Complex With
Inhibitor Ketoconazole (Kc)
pdb|2XFH|A Chain A, Structure Of Cytochrome P450 Eryk Cocrystallized With
Inhibitor Clotrimazole
Length = 411
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 256 KKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLAERP 315
++ D +D++SRL++ +GR +DD A +LL A + +V + +IV+ L E P
Sbjct: 203 ERRADPGDDLISRLVLAEV-DGRALDDEEAANFSTALLLAGHITTTVLLGNIVRTLDEHP 261
Query: 316 EIYEKVRKEQIEI 328
++ ++ I
Sbjct: 262 AHWDAAAEDPGRI 274
>pdb|1U13|A Chain A, Crystal Structure Analysis Of The C37lC151TC442A-Triple
Mutant Of Cyp51 From Mycobacterium Tuberculosis
Length = 455
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 133/345 (38%), Gaps = 35/345 (10%)
Query: 55 YLKKARTNTIHKFIAERVQKYKTKCFKTCHIGQNMVFLTSAEGNKFLF-SNDYKLVRSWW 113
+L++ RT+ I R + F+ G+ +V L+ + N+F F + D L ++
Sbjct: 18 HLEEFRTDPIGLMQRVRDELGDVGTFQLA--GKQVVLLSGSHANEFFFRAGDDDLDQAKA 75
Query: 114 PVTFLKVFENAGEEITVEEVIRARKQFLSFFN-EPDALARHVA-ITDQVVQDHFKCYWDG 171
+F GE + + RK+ L + + H A I DQV + W
Sbjct: 76 YPFMTPIF---GEGVVFDASPERRKEMLHNAALRGEQMKGHAATIEDQVRR--MIADWGE 130
Query: 172 SKQVGVYPLARKLTFDVSCRLLADIQDREILDESLPLMGNVVRAFFAF-----PINFPGT 226
+ ++ + +LT S L + R+ LD G + + P+ +
Sbjct: 131 AGEIDLLDFFAELTIYTSSATLIGKKFRDQLD------GRFAKLYHELERGTDPLAYVDP 184
Query: 227 ILNRAIKSSRR-------LRKIFVDIIKERRGDLLEKKNLDQRNDVLSRLLVENYKEGRD 279
L I+S RR L + DI+ R + K+ DVL + E
Sbjct: 185 YL--PIESFRRRDEARNGLVALVADIMNGRIANPPTDKSDRDMLDVLIAVKAETGTPRFS 242
Query: 280 IDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMS 339
D++ +S++ A + S T + + L + Y V E E+ G +S
Sbjct: 243 ADEI--TGMFISMMFAGHHTSSGTASWTLIELMRHRDAYAAVIDELDELYGD---GRSVS 297
Query: 340 MEDVKKMKFSMNVLSESLRLEAPASGTFREALDDFNYEGFLIPKG 384
++++ NVL E+LRL P R A +F +G I +G
Sbjct: 298 FHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGHRIHEG 342
>pdb|3P3L|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Wildtype) From Streptomyces Thioluteus
pdb|3P3L|B Chain B, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Wildtype) From Streptomyces Thioluteus
Length = 406
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 22/141 (15%)
Query: 254 LEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLAE 313
+EK+ ++ +D+ S + V + +G +DD L + ++L A Y+ + + + + A+
Sbjct: 204 IEKRKVEPGDDLTSDI-VRAFHDGV-LDDYELRTLVATVLVAGYETTNHQLALAMYDFAQ 261
Query: 314 RPEIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRLEAPASGTFREALDD 373
P+ + K+ KE E+A ++E+V + ++ V + R A +D
Sbjct: 262 HPDQWMKI-KENPELAPQ-------AVEEVLRWSPTLPVTAT------------RVAAED 301
Query: 374 FNYEGFLIPKGWKVIIHFNIS 394
F G IP G V + +++
Sbjct: 302 FEVNGVRIPTGTPVFMCAHVA 322
>pdb|3P3O|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Ntermii) From Streptomyces Thioluteus
pdb|3P3X|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Nterm- Aurh-I) From Streptomyces Thioluteus
pdb|3P3X|B Chain B, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Nterm- Aurh-I) From Streptomyces Thioluteus
pdb|3P3Z|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh From Streptomyces Thioluteus In Complex With
Ancymidol
Length = 416
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 22/141 (15%)
Query: 254 LEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNLVSLLSAAYDNPSVTITSIVKNLAE 313
+EK+ ++ +D+ S + V + +G +DD L + ++L A Y+ + + + + A+
Sbjct: 214 IEKRKVEPGDDLTSDI-VRAFHDGV-LDDYELRTLVATVLVAGYETTNHQLALAMYDFAQ 271
Query: 314 RPEIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRLEAPASGTFREALDD 373
P+ + K+ KE E+A ++E+V + ++ V + R A +D
Sbjct: 272 HPDQWMKI-KENPELAPQ-------AVEEVLRWSPTLPVTAT------------RVAAED 311
Query: 374 FNYEGFLIPKGWKVIIHFNIS 394
F G IP G V + +++
Sbjct: 312 FEVNGVRIPTGTPVFMCAHVA 332
>pdb|2FR7|A Chain A, Crystal Structure Of Cytochrome P450 Cyp199a2
pdb|4DNJ|A Chain A, The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199a2
Length = 412
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 21/99 (21%)
Query: 291 SLLSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSM 350
SLLSA D I + V LA P+ + ++R + +
Sbjct: 247 SLLSAGLDTTVNGIAAAVYCLARFPDEFARLRADP---------------------SLAR 285
Query: 351 NVLSESLRLEAPASGTFREALDDFNYEGFLIPKGWKVII 389
N E++R E+P FR D G I +G KV++
Sbjct: 286 NAFEEAVRFESPVQTFFRTTTRDVELAGATIGEGEKVLM 324
>pdb|2Y46|A Chain A, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin Iv In C 2 2 21 Space Group
pdb|2Y46|B Chain B, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin Iv In C 2 2 21 Space Group
pdb|2Y46|C Chain C, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin Iv In C 2 2 21 Space Group
pdb|2Y5N|A Chain A, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin V In P21 Space Group
pdb|2Y5N|B Chain B, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin V In P21 Space Group
pdb|2Y5Z|A Chain A, Mixed-Function P450 Mycg In Complex With Mycinamicin Iii
In C2221 Space Group
pdb|2Y5Z|B Chain B, Mixed-Function P450 Mycg In Complex With Mycinamicin Iii
In C2221 Space Group
pdb|2Y5Z|C Chain C, Mixed-Function P450 Mycg In Complex With Mycinamicin Iii
In C2221 Space Group
pdb|2Y98|A Chain A, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin Iv In P21212 Space Group
pdb|2YGX|A Chain A, Structure Of The Mixed-Function P450 Mycg In P21 Space
Group
pdb|2YGX|B Chain B, Structure Of The Mixed-Function P450 Mycg In P21 Space
Group
pdb|2YGX|C Chain C, Structure Of The Mixed-Function P450 Mycg In P21 Space
Group
pdb|2YGX|D Chain D, Structure Of The Mixed-Function P450 Mycg In P21 Space
Group
pdb|2YCA|A Chain A, Mixed-Function P450 Mycg In Complex With Mycinamicin Iii
In P21212 Space Group
Length = 417
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 251 GDLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNL----VSLLSAAYDNPSVTITS 306
GDL++++ + +D++S L+ + RD D + L + LL A Y++ + I
Sbjct: 211 GDLIDRRRKEPTDDLVSALV-----QARDQQDSLSEQELLDLAIGLLVAGYESTTTQIAD 265
Query: 307 IVKNLAERPEIYEKV 321
V L RPE+ ++
Sbjct: 266 FVYLLMTRPELRRQL 280
>pdb|4AW3|A Chain A, Structure Of The Mixed-Function P450 Mycg F286v Mutant In
Complex With Mycinamicin V In P1 Space Group
pdb|4AW3|B Chain B, Structure Of The Mixed-Function P450 Mycg F286v Mutant In
Complex With Mycinamicin V In P1 Space Group
Length = 417
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 251 GDLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNL----VSLLSAAYDNPSVTITS 306
GDL++++ + +D++S L+ + RD D + L + LL A Y++ + I
Sbjct: 211 GDLIDRRRKEPTDDLVSALV-----QARDQQDSLSEQELLDLAIGLLVAGYESTTTQIAD 265
Query: 307 IVKNLAERPEIYEKV 321
V L RPE+ ++
Sbjct: 266 FVYLLMTRPELRRQL 280
>pdb|3ZSN|A Chain A, Structure Of The Mixed-Function P450 Mycg F286a Mutant In
Complex With Mycinamicin Iv
pdb|3ZSN|B Chain B, Structure Of The Mixed-Function P450 Mycg F286a Mutant In
Complex With Mycinamicin Iv
pdb|3ZSN|C Chain C, Structure Of The Mixed-Function P450 Mycg F286a Mutant In
Complex With Mycinamicin Iv
Length = 417
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 251 GDLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNL----VSLLSAAYDNPSVTITS 306
GDL++++ + +D++S L+ + RD D + L + LL A Y++ + I
Sbjct: 211 GDLIDRRRKEPTDDLVSALV-----QARDQQDSLSEQELLDLAIGLLVAGYESTTTQIAD 265
Query: 307 IVKNLAERPEIYEKV 321
V L RPE+ ++
Sbjct: 266 FVYLLMTRPELRRQL 280
>pdb|1GWI|A Chain A, The 1.92 A Structure Of Streptomyces Coelicolor A3(2)
Cyp154c1: A New Monooxygenase That Functionalizes
Macrolide Ring Systems
pdb|1GWI|B Chain B, The 1.92 A Structure Of Streptomyces Coelicolor A3(2)
Cyp154c1: A New Monooxygenase That Functionalizes
Macrolide Ring Systems
Length = 411
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 45/221 (20%)
Query: 193 LADIQDREILDESLPLMGNVV--RAFFAFPINFPGTILNRAIKSSR--RLRKIF------ 242
+ ++ DR +LDE LP G VV +A FA+P+ I+ +R RL+ +F
Sbjct: 123 ITELTDR-LLDE-LPADGGVVDLKAAFAYPLPMYVVADLMGIEEARLPRLKVLFEKFFST 180
Query: 243 -------VDIIKERRG---DLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNLVSL 292
V + E D + K +D L+ L++ + G + D + L +
Sbjct: 181 QTPPEEVVATLTELASIMTDTVAAKRAAPGDD-LTSALIQASENGDHLTDAEIVSTLQLM 239
Query: 293 LSAAYDNPSVTITSIVKNLAERPEIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNV 352
++A ++ I + V NL+ PE V + E + V
Sbjct: 240 VAAGHETTISLIVNAVVNLSTHPEQRALVLSGEAEWSA---------------------V 278
Query: 353 LSESLRLEAPASGTF-REALDDFNYEGFLIPKGWKVIIHFN 392
+ E+LR P S R A +D +IP G +I+ +
Sbjct: 279 VEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYG 319
>pdb|2Z36|A Chain A, Crystal Structure Of Cytochrome P450 Moxa From Nonomuraea
Recticatena (Cyp105)
pdb|2Z36|B Chain B, Crystal Structure Of Cytochrome P450 Moxa From Nonomuraea
Recticatena (Cyp105)
Length = 413
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 252 DLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNLVSLLSAAYDNPSVTITSIVKNL 311
DL+ +K + +D+ SR + +EG +D L LL+A ++ + I+ V L
Sbjct: 203 DLITRKESEPGDDLFSRQIARQRQEG-TLDHAGLVSLAFLLLTAGHETTANMISLGVVGL 261
Query: 312 AERPEIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRLEAPASG-TFREA 370
P EQ+ + K+ M++E E LR A G T R A
Sbjct: 262 LSHP--------EQLTVVKANPGRTPMAVE-------------ELLRYFTIADGVTSRLA 300
Query: 371 LDDFNYEGFLIPKGWKVII 389
+D G I G VI+
Sbjct: 301 TEDVEIGGVSIKAGEGVIV 319
>pdb|2RCM|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a) At 1.73 A Resolution
pdb|2RCM|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a) At 1.73 A Resolution
pdb|3DSJ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSJ|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSK|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid At
1.55 A Resolution
pdb|3DSK|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid At
1.55 A Resolution
Length = 495
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 316 EIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRLEAPASGTFREALDDFN 375
+++ ++ +E + KS G ++M ++KM+ + +V+ E LR E P + + A D
Sbjct: 316 QVHNRLAEEIRSVIKSN--GGELTMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLV 373
Query: 376 YE 377
E
Sbjct: 374 IE 375
>pdb|2RCH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCH|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|2RCL|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|3CLI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3CLI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3DSI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
pdb|3DSI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
Length = 495
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 316 EIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRLEAPASGTFREALDDFN 375
+++ ++ +E + KS G ++M ++KM+ + +V+ E LR E P + + A D
Sbjct: 316 QVHNRLAEEIRSVIKSN--GGELTMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLV 373
Query: 376 YE 377
E
Sbjct: 374 IE 375
>pdb|3DAM|A Chain A, Crystal Structure Of Allene Oxide Synthase
pdb|3DAN|A Chain A, Crystal Structure Of Allene Oxide Synthase
pdb|3DBM|A Chain A, Crystal Structure Of Allene Oxide Synthase
Length = 473
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 324 EQIEIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRLEAPASGTFREALDDFNYE 377
E+I A ++++E +++M + +V+ ESLR+E P + +A +F E
Sbjct: 305 EEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYESLRIEPPVPPQYGKAKSNFTIE 358
>pdb|3A4G|A Chain A, Structure Of Cytochrome P450 Vdh From Pseudonocardia
Autotrophica (Trigonal Crystal Form)
pdb|3A4H|A Chain A, Structure Of Cytochrome P450 Vdh From Pseudonocardia
Autotrophica (Orthorhombic Crystal Form)
Length = 411
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 22/141 (15%)
Query: 252 DLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNLVSLLSAAYDNPSVTITSIVKNL 311
DLLE+K + + +LS LL + ++G + L + LL A ++ I + V L
Sbjct: 193 DLLERKRTEPDDALLSSLLAVSDEDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLAL 252
Query: 312 AERPEIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRLEAPAS-GTFREA 370
P+ K+ E + S + E LR ++P S R
Sbjct: 253 LTHPD-QRKLLAEDPSLISS--------------------AVEEFLRFDSPVSQAPIRFT 291
Query: 371 LDDFNYEGFLIPKGWKVIIHF 391
+D Y G IP G V++
Sbjct: 292 AEDVTYSGVTIPAGEMVMLGL 312
>pdb|2W3P|A Chain A, Boxc Crystal Structure
pdb|2W3P|B Chain B, Boxc Crystal Structure
Length = 556
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 111 SWWPVTFLKVFENAGEEITVEEVIRARKQFLSFFNEPDALARHVAITDQVVQDHFKCYWD 170
+WWP+ F + F++A + E+ F E D ARH+ D + H K +W
Sbjct: 303 NWWPLKFAREFDDAILSMRTNELAVGT---WVFRTEGD--ARHLLAADASLMQH-KDHWF 356
Query: 171 GSKQVGVYPLARKLT-FDVSCRLL 193
+ +G+ L R L DVS R L
Sbjct: 357 VRETIGL--LRRTLARIDVSSRSL 378
>pdb|3A4Z|A Chain A, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A4Z|B Chain B, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A4Z|C Chain C, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A4Z|D Chain D, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A4Z|E Chain E, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A50|A Chain A, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A50|B Chain B, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A50|C Chain C, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A50|D Chain D, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A50|E Chain E, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A51|A Chain A, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
pdb|3A51|B Chain B, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
pdb|3A51|C Chain C, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
pdb|3A51|D Chain D, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
pdb|3A51|E Chain E, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
Length = 411
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 22/141 (15%)
Query: 252 DLLEKKNLDQRNDVLSRLLVENYKEGRDIDDVFLAKNLVSLLSAAYDNPSVTITSIVKNL 311
DLLE+K + + +LS LL + +G + L + LL A ++ I + V L
Sbjct: 193 DLLERKRTEPDDALLSSLLAVSDMDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLAL 252
Query: 312 AERPEIYEKVRKEQIEIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRLEAPAS-GTFREA 370
P+ K+ E + S + E LR ++P S R
Sbjct: 253 LTHPD-QRKLLAEDPSLISS--------------------AVEEFLRFDSPVSQAPIRFT 291
Query: 371 LDDFNYEGFLIPKGWKVIIHF 391
+D Y G IP G V++
Sbjct: 292 AEDVTYSGVTIPAGEMVMLGL 312
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 10/126 (7%)
Query: 264 DVLSRLLVENYKEGRDIDDVFLAKNLVSLL----SAAYDNPSVTITSIVKNLAERPEIYE 319
D+ L + K R ++ + +V+L+ A +D + I+ + L +PEI
Sbjct: 258 DITGALFKHSKKGPRASGNLIPQEKIVNLVNDIFGAGFDTVTTAISWSLMYLVTKPEIQR 317
Query: 320 KVRKE-QIEIAKSKAPGEHMSMEDVKKMKFSMNVLSESLRLEAPASGTFREALD-DFNYE 377
K++KE I + + P + D ++ + + E+ R + T + D
Sbjct: 318 KIQKELDTVIGRERRP----RLSDRPQLPYLEAFILETFRHSSFLPFTIPHSTTRDTTLN 373
Query: 378 GFLIPK 383
GF IPK
Sbjct: 374 GFYIPK 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,885,775
Number of Sequences: 62578
Number of extensions: 430803
Number of successful extensions: 1128
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1096
Number of HSP's gapped (non-prelim): 63
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)