Query 015831
Match_columns 399
No_of_seqs 47 out of 49
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 03:17:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kw0_A Cysteine peptidase; str 98.6 1.8E-07 6.2E-12 85.6 10.7 103 209-327 37-150 (214)
2 2if6_A Hypothetical protein YI 98.5 3.2E-07 1.1E-11 80.9 8.1 122 208-355 1-122 (186)
3 4h4j_A Hypothetical protein; P 57.8 17 0.0006 34.0 6.2 72 209-299 168-239 (240)
4 2jyx_A Lipoprotein SPR; soluti 37.8 41 0.0014 28.1 4.8 52 206-282 62-114 (136)
5 2im9_A Hypothetical protein; s 34.5 78 0.0027 31.3 6.8 80 210-300 239-322 (333)
6 2p1g_A Putative xylanase; stru 33.2 86 0.0029 29.8 6.7 56 210-282 170-226 (249)
7 3jxo_A TRKA-N domain protein; 21.8 80 0.0027 23.3 3.5 29 208-239 57-85 (86)
8 3j21_U 50S ribosomal protein L 18.7 38 0.0013 29.1 1.2 16 293-308 26-41 (121)
9 1rwi_B Serine/threonine-protei 16.6 85 0.0029 26.0 2.8 21 244-265 236-256 (270)
10 1vm9_A Toluene-4-monooxygenase 15.0 2E+02 0.0069 22.4 4.5 55 208-280 7-68 (111)
No 1
>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}
Probab=98.61 E-value=1.8e-07 Score=85.55 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=81.2
Q ss_pred CCCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCCCcccccceeecchhHHHHHHhcc-
Q 015831 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKD- 287 (399)
Q Consensus 209 ~~dIhsGDfL~iskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~kd- 287 (399)
.+++++||.|.++ |+ +.++.+|+++|+|..+|.+|.+.+ +++++|+|+.. ..+|+..|+++|.+ .++.
T Consensus 37 ~~~l~~GDlif~~---~~-~~~s~~I~~~T~s~~sHvgI~~~~-~~~~~vieA~~-----~~GV~~~~L~~fl~-~~~~~ 105 (214)
T 3kw0_A 37 INVLKTGDIFLCS---GN-YLVSKLIKKVSESMFSHTGIIVKW-GEHTLIMESVE-----DDGVRIVPLEHYIK-NYENS 105 (214)
T ss_dssp TTTCCTTCEEEEE---EC-SHHHHHHHHHTTSSCCEEEEEEEE-TTEEEEEEEET-----TTEEEEEETHHHHH-CGGGS
T ss_pred HhhCCCCCEEEEe---CC-CcHHHHHHHhcCCCCcEEEEEEec-CCceEEEEecC-----CCCEEEecHHHHHH-Hhhcc
Confidence 6799999999996 34 778999999999999999999987 78999999953 35699999999975 1211
Q ss_pred --CCCCcEEEee--------CChHHHhhcchHHHHHHHHhhcCCcceeee
Q 015831 288 --DSNPQIALLP--------LHPDVRAKFNSTAAWEYARSMSGKPYGYHN 327 (399)
Q Consensus 288 --~a~~~ValLP--------L~pe~RakFN~TAAwef~~~~eG~PYGYhN 327 (399)
..+-.|++.. |.+|.++ ++.+|+++..|+||.+.+
T Consensus 106 ~~~y~~~i~V~Rl~~~~~v~lt~~~~~-----~l~~~a~~~lGkpYd~~~ 150 (214)
T 3kw0_A 106 NNRYNGSLFIARHELLQNVNDDSEMIR-----NLIKVGFSLLNSGYDKNE 150 (214)
T ss_dssp SSCCSEEEEEEEEGGGTTSCTTSHHHH-----HHHHHHHHHCCSCCCHHH
T ss_pred cccccCceEEEEeccccccCCCHHHHH-----HHHHHHHHhcCCCCCcHH
Confidence 2223577764 5555554 588999999999998854
No 2
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=98.48 E-value=3.2e-07 Score=80.92 Aligned_cols=122 Identities=15% Similarity=0.149 Sum_probs=86.3
Q ss_pred CCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCCCcccccceeecchhHHHHHHhcc
Q 015831 208 NPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKD 287 (399)
Q Consensus 208 ~~~dIhsGDfL~iskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~kd 287 (399)
+++++++||.|... |+ +.+..+|+.+|++..+|.+|.+.+ +|+.+|+|+.. +|+..+.++|.+.
T Consensus 1 ~~~~l~~GDlvf~~---~~-~~~s~~I~~~t~~~~sHvgI~~~~-~~~~~viea~~-------gV~~~~l~~f~~~---- 64 (186)
T 2if6_A 1 SLWQPQTGDIIFQI---SR-SSQSKAIQLATHSDYSHTGMLVMR-NKKPYVFEAVG-------PVKYTPLKQWIAH---- 64 (186)
T ss_dssp --CCCCTTCEEEEC---CC-STTHHHHHHHHTSSCCEEEEEEEE-TTEEEEEEESS-------SEEEEEHHHHHHT----
T ss_pred CcccCCCCCEEEEE---cC-CchHHHHHHHcCCCCceEEEEEEe-CCcEEEEEeCC-------CeEEEEHHHHHhh----
Confidence 46789999998764 33 568899999999999999999975 78899999972 5999999999752
Q ss_pred CCCCcEEEeeCChHHHhhcchHHHHHHHHhhcCCcceeeeeeEEEEecCCCCCCCCCChhHHHHHHHH
Q 015831 288 DSNPQIALLPLHPDVRAKFNSTAAWEYARSMSGKPYGYHNMIFSWIDTMADNYPPPLDAHLVVSVMSM 355 (399)
Q Consensus 288 ~a~~~ValLPL~pe~RakFN~TAAwef~~~~eG~PYGYhN~iFsWIDT~~dNYPppLda~lv~~v~s~ 355 (399)
..+-++++.+++.++.+ -...+|.+++.+..|+||.|.. . .| ++ .-.=++||+.++.-
T Consensus 65 ~~~~~~~v~Rl~~~ls~-~~~~~~~~~a~~~~G~pY~~~f-~---~~--~~---~~yCSelV~~ay~~ 122 (186)
T 2if6_A 65 GEKGKYVVRRVEGGLSV-EQQQKLAQTAKRYLGKPYDFSF-S---WS--DD---RQYCSEVVWKVYQN 122 (186)
T ss_dssp SGGGCEEEEEETTCCCH-HHHHHHHHHHGGGTTCCBCTTC-C---SS--SS---SBCHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCH-HHHHHHHHHHHHHcCCcCCccc-c---CC--CC---cEEhHHHHHHHHHH
Confidence 11236888888753211 1134678899999999999942 2 11 11 12234777777643
No 3
>4h4j_A Hypothetical protein; PF07313 family protein, DUF 1460, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.15A {Bacteroides uniformis}
Probab=57.82 E-value=17 Score=34.04 Aligned_cols=72 Identities=13% Similarity=0.262 Sum_probs=49.4
Q ss_pred CCCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCCCcccccceeecchhHHHHHHhccC
Q 015831 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKDD 288 (399)
Q Consensus 209 ~~dIhsGDfL~iskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~kd~ 288 (399)
.+.|++||.++|.+= - .|--..|.-++.|. +|+|+...--.. .++-.|...|..|+.+ .+.
T Consensus 168 ~~~l~~GDiIai~t~---~----------~GLDvsH~Giai~~-~~~l~l~hASS~--~~~vvv~d~pl~~Yl~---~~~ 228 (240)
T 4h4j_A 168 LPWIKDGDIIAITTN---T----------PGLDVAHMGIAFYA-DNKLLLVHASST--DKKVVVSKVPLSQMLK---DNN 228 (240)
T ss_dssp CTTSCTTCEEEEEEC---S----------TTCSEEEEEEEEEE-TTEEEEEEEETT--TTEEEECSSCHHHHHH---HCT
T ss_pred HhhCCCCcEEEEEec---C----------CCceEEEEEEEEEE-CCeEEEEEcCCC--CCceEEcCccHHHHHh---hCC
Confidence 467999999999863 2 35566899999996 888999873222 2334556789999974 333
Q ss_pred CCCcEEEeeCC
Q 015831 289 SNPQIALLPLH 299 (399)
Q Consensus 289 a~~~ValLPL~ 299 (399)
+.+=|.++..+
T Consensus 229 ~~~GI~V~R~k 239 (240)
T 4h4j_A 229 KWTGIRVLRMK 239 (240)
T ss_dssp TEEEEEEEEEC
T ss_pred CCCCeEEEEeC
Confidence 44446666543
No 4
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=37.83 E-value=41 Score=28.11 Aligned_cols=52 Identities=12% Similarity=0.447 Sum_probs=33.0
Q ss_pred cCCCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCCCcccccceeecchhH-HHH
Q 015831 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDE-WWE 282 (399)
Q Consensus 206 ~i~~~dIhsGDfL~iskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pwee-W~~ 282 (399)
.++.+++++||+|... +|+..+|..|.+= +|+ ++++... ..|+..+.++ ||.
T Consensus 62 ~v~~~~l~pGDLvff~----------------~~~~~~HVgIy~G--~g~--~IHa~~~-----~gV~i~~l~~~yw~ 114 (136)
T 2jyx_A 62 SVSRSNLRTGDLVLFR----------------AGSTGRHVGIYIG--NNQ--FVHASTS-----SGVIISSMNEPYWK 114 (136)
T ss_dssp ECCTTTCCTTEEEEEE----------------CSSSSEEEEEEEE--TTE--EEEEETT-----TEEEEEETTSHHHH
T ss_pred EcchHhCCCCCEEEEC----------------CCCCCCEEEEEEc--CCE--EEEECCC-----CCEEEEECCchHhH
Confidence 5677899999998765 2334789998883 564 4544332 2356666654 553
No 5
>2im9_A Hypothetical protein; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.67A {Legionella pneumophila subsp} SCOP: d.3.1.13
Probab=34.51 E-value=78 Score=31.33 Aligned_cols=80 Identities=14% Similarity=0.224 Sum_probs=50.0
Q ss_pred CCCCCCCEEEEEeecccCCchhhHHHh-hcCcCccceeEEeecCCCcEEEEecCCCCcccccceeecchhHHHHHHh--c
Q 015831 210 EDVHSGDFLAVSKIRGRWGGFETLEKW-VTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELAL--K 286 (399)
Q Consensus 210 ~dIhsGDfL~iskirgr~dG~d~li~W-~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~--k 286 (399)
+.|++||.|+|.+= .| .|.++ ++|--..|+-++.|. +|+|+..---.. .+ .|..-|..|+.+... +
T Consensus 239 ~~I~~GDII~I~t~--~~----~l~~~ig~GLDVsHvGiai~~-~g~l~lrhASS~---~~-kVVd~pL~~Yl~~~~~~~ 307 (333)
T 2im9_A 239 SQIPNGAVIEIIRP--NW----DLRQQIGTELDISHLGFAIWI-NNELFFRQASSQ---YG-KVVDVSLIDYLDKARSSP 307 (333)
T ss_dssp TTSCTTCEEEEEEE--EE----CCHHHHSSCEEEEEEEEEEEE-TTEEEEEEEETT---TT-EEEEEEHHHHHHHHTTCS
T ss_pred hhCCCCCEEEEEec--Cc----cccccccCCCcceEEEEEEEE-CCeEEEEecCCC---CC-eEEeccHHHHHhhcccCC
Confidence 78999999999952 11 11122 246677899999997 789998754333 22 455888999976211 2
Q ss_pred cCCCCc-EEEeeCCh
Q 015831 287 DDSNPQ-IALLPLHP 300 (399)
Q Consensus 287 d~a~~~-ValLPL~p 300 (399)
...|.. +.++|++|
T Consensus 308 s~~GI~V~r~~p~~~ 322 (333)
T 2im9_A 308 TIKGINIQVVLPEKP 322 (333)
T ss_dssp SCCEEEEEEECCSSC
T ss_pred CccceEEEEecCCCc
Confidence 223333 23456665
No 6
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}
Probab=33.17 E-value=86 Score=29.79 Aligned_cols=56 Identities=14% Similarity=0.280 Sum_probs=40.3
Q ss_pred CCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCCCccccccee-ecchhHHHH
Q 015831 210 EDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIV-VIPWDEWWE 282 (399)
Q Consensus 210 ~dIhsGDfL~iskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq-~~pweeW~~ 282 (399)
+.|++||.|+|..= ..|--..|+-++.|. +|+++..-.-..-. ++|- ..|..|+++
T Consensus 170 ~~l~~GDiI~i~t~-------------~~GLDVsHvGi~i~~-~~~l~f~hASs~~~---kVv~s~~~l~~Y~~ 226 (249)
T 2p1g_A 170 PWIKNGDIIALTTN-------------TPGLDVSHMGIAIYI-KGQLHLLHASSKEG---KVVVGKTALSQMLK 226 (249)
T ss_dssp TTSCTTCEEEEEEC-------------STTCSEEEEEEEEEE-TTEEEEEEEETTTT---EEEECSSCHHHHHH
T ss_pred hcCCCCCEEEEEeC-------------CCCCceeEEEEEEEE-CCeEEEEEcCCCCC---eEEECCcCHHHHHh
Confidence 77999999999852 145567899999997 89999885433321 3333 349999974
No 7
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=21.79 E-value=80 Score=23.32 Aligned_cols=29 Identities=31% Similarity=0.263 Sum_probs=21.4
Q ss_pred CCCCCCCCCEEEEEeecccCCchhhHHHhhcC
Q 015831 208 NPEDVHSGDFLAVSKIRGRWGGFETLEKWVTG 239 (399)
Q Consensus 208 ~~~dIhsGDfL~iskirgr~dG~d~li~W~tG 239 (399)
...-|++||.|.|. |+-+.++.+.+..+|
T Consensus 57 ~~~~l~~GD~l~v~---g~~~~~~~~~~~~~~ 85 (86)
T 3jxo_A 57 GDTEILSGDKLYVI---VSAEAKETVEETLLG 85 (86)
T ss_dssp TTCBCCTTCEEEEE---EETTTHHHHHHHHC-
T ss_pred CCCEECCCCEEEEE---ECHHHHHHHHHHHcC
Confidence 35679999999987 455777887776654
No 8
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=18.75 E-value=38 Score=29.06 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=13.0
Q ss_pred EEEeeCChHHHhhcch
Q 015831 293 IALLPLHPDVRAKFNS 308 (399)
Q Consensus 293 ValLPL~pe~RakFN~ 308 (399)
+---||++|+|++||-
T Consensus 26 ~msa~LSkeLR~ky~~ 41 (121)
T 3j21_U 26 LMSAPLSRELREKYKV 41 (121)
T ss_dssp GSEEEBCHHHHHHTCC
T ss_pred hhcCcCCHHHHHHhCC
Confidence 3456999999999974
No 9
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=16.59 E-value=85 Score=26.02 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=15.7
Q ss_pred ceeEEeecCCCcEEEEecCCCC
Q 015831 244 HTAVCLKDKEGNLWVGESGHEN 265 (399)
Q Consensus 244 Htav~Lrd~dGeL~v~ES~~~~ 265 (399)
-+.|++ ++||+|||.++++..
T Consensus 236 p~~i~~-~~~g~l~v~~~~~~~ 256 (270)
T 1rwi_B 236 PLAVAV-DSDRTVYVADRGNDR 256 (270)
T ss_dssp EEEEEE-CTTCCEEEEEGGGTE
T ss_pred ceeEEE-CCCCCEEEEECCCCE
Confidence 345555 689999999988764
No 10
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=14.97 E-value=2e+02 Score=22.38 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=33.8
Q ss_pred CCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCC--Cc---cc--ccceeecchhHH
Q 015831 208 NPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHE--NE---KG--EEIIVVIPWDEW 280 (399)
Q Consensus 208 ~~~dIhsGDfL~iskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~--~~---~~--~~~Iq~~pweeW 280 (399)
..+||..|+.+.+. + . .|...+..|+.||++++.+..-. .. ++ +...-+=||.-|
T Consensus 7 ~~~~l~~g~~~~~~-~----~-------------~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~ 68 (111)
T 1vm9_A 7 SLDDIWVGEMETFE-T----S-------------DGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLW 68 (111)
T ss_dssp EGGGSCTTCEEEEE-C----T-------------TCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCC
T ss_pred EHHHCCCCCeEEEE-E----c-------------CCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCC
Confidence 45788889876554 2 0 24567777878999999986422 11 11 223344577777
Done!