Query 015833
Match_columns 399
No_of_seqs 416 out of 3338
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 01:19:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03009 TryX_like_TryX_NRX Try 99.9 1.9E-24 4.2E-29 180.8 13.5 130 179-316 1-131 (131)
2 cd03008 TryX_like_RdCVF Trypar 99.9 7.8E-24 1.7E-28 178.3 11.3 124 189-314 17-142 (146)
3 cd03009 TryX_like_TryX_NRX Try 99.9 1.9E-23 4.2E-28 174.8 13.3 129 17-148 3-131 (131)
4 cd02964 TryX_like_family Trypa 99.9 1.1E-22 2.5E-27 170.3 13.0 127 181-316 3-132 (132)
5 cd03008 TryX_like_RdCVF Trypar 99.9 8.7E-23 1.9E-27 171.9 10.8 119 24-146 17-142 (146)
6 cd02964 TryX_like_family Trypa 99.9 4.1E-22 9E-27 166.9 13.1 126 19-148 5-132 (132)
7 PF08534 Redoxin: Redoxin; In 99.8 1.3E-20 2.8E-25 160.6 11.4 119 173-303 2-133 (146)
8 KOG2501 Thioredoxin, nucleored 99.8 1.7E-20 3.7E-25 156.2 10.6 129 11-143 11-142 (157)
9 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 5.5E-20 1.2E-24 152.0 9.9 116 173-300 1-124 (124)
10 PRK15412 thiol:disulfide inter 99.8 1.4E-19 2.9E-24 160.5 12.8 118 171-303 39-161 (185)
11 cd02969 PRX_like1 Peroxiredoxi 99.8 3.1E-19 6.8E-24 156.3 15.0 148 174-337 1-157 (171)
12 PF13905 Thioredoxin_8: Thiore 99.8 1.7E-19 3.6E-24 142.1 11.2 93 197-297 1-95 (95)
13 cd02967 mauD Methylamine utili 99.8 1.8E-19 3.9E-24 146.8 11.8 110 178-301 1-112 (114)
14 KOG2501 Thioredoxin, nucleored 99.8 1.9E-19 4.1E-24 150.0 11.7 121 183-311 19-142 (157)
15 PRK03147 thiol-disulfide oxido 99.8 3.2E-19 6.9E-24 156.3 13.3 120 172-302 36-156 (173)
16 PLN02399 phospholipid hydroper 99.8 1.8E-19 4E-24 163.7 12.1 122 171-303 73-219 (236)
17 cd03010 TlpA_like_DsbE TlpA-li 99.8 2.4E-19 5.1E-24 149.1 11.1 115 176-303 2-119 (127)
18 cd02967 mauD Methylamine utili 99.8 5.1E-19 1.1E-23 144.1 12.6 112 13-134 1-113 (114)
19 PTZ00056 glutathione peroxidas 99.8 3.1E-19 6.7E-24 159.6 12.0 121 172-303 14-163 (199)
20 cd03015 PRX_Typ2cys Peroxiredo 99.8 6.3E-19 1.4E-23 154.6 13.7 119 173-302 1-137 (173)
21 cd03012 TlpA_like_DipZ_like Tl 99.8 2.1E-19 4.5E-24 149.3 9.7 106 186-302 13-123 (126)
22 PLN02412 probable glutathione 99.8 2.7E-19 5.8E-24 155.8 10.8 118 175-303 7-149 (167)
23 PRK14018 trifunctional thiored 99.8 3.7E-19 7.9E-24 177.9 13.0 119 173-303 34-158 (521)
24 PF08534 Redoxin: Redoxin; In 99.8 4.2E-19 9.1E-24 151.2 10.9 120 7-134 1-132 (146)
25 PRK00522 tpx lipid hydroperoxi 99.8 8.2E-19 1.8E-23 152.8 11.8 117 173-302 20-148 (167)
26 PRK10382 alkyl hydroperoxide r 99.8 1.1E-18 2.4E-23 153.9 12.7 159 172-358 3-175 (187)
27 cd00340 GSH_Peroxidase Glutath 99.8 3.5E-19 7.6E-24 152.8 8.8 115 177-303 2-141 (152)
28 cd03014 PRX_Atyp2cys Peroxired 99.8 9.8E-19 2.1E-23 148.5 11.0 117 173-302 2-127 (143)
29 PRK09437 bcp thioredoxin-depen 99.8 1.4E-18 3.1E-23 149.4 12.0 118 173-302 6-137 (154)
30 TIGR02661 MauD methylamine deh 99.8 3.6E-18 7.8E-23 151.8 14.3 130 172-329 47-179 (189)
31 TIGR03137 AhpC peroxiredoxin. 99.8 1.6E-18 3.4E-23 153.8 11.6 160 172-358 3-175 (187)
32 TIGR00385 dsbE periplasmic pro 99.8 2.4E-18 5.1E-23 150.9 12.1 119 171-303 34-156 (173)
33 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 1.3E-18 2.9E-23 143.6 9.9 116 8-131 1-123 (124)
34 PF13905 Thioredoxin_8: Thiore 99.8 4E-18 8.7E-23 134.2 11.8 93 32-129 1-95 (95)
35 cd03018 PRX_AhpE_like Peroxire 99.8 3.4E-18 7.3E-23 146.1 12.3 119 173-303 3-132 (149)
36 cd03017 PRX_BCP Peroxiredoxin 99.8 3.1E-18 6.7E-23 144.7 11.3 116 176-303 2-128 (140)
37 COG1225 Bcp Peroxiredoxin [Pos 99.8 5.7E-18 1.2E-22 142.6 12.7 118 172-301 5-136 (157)
38 cd03010 TlpA_like_DsbE TlpA-li 99.8 1.9E-18 4E-23 143.7 9.5 113 11-133 2-117 (127)
39 PTZ00256 glutathione peroxidas 99.8 3.6E-18 7.9E-23 151.0 11.4 119 174-303 17-166 (183)
40 PTZ00102 disulphide isomerase; 99.8 2.9E-17 6.4E-22 166.8 19.3 72 196-298 374-445 (477)
41 cd00340 GSH_Peroxidase Glutath 99.8 2.8E-18 6E-23 147.3 8.8 117 12-134 2-140 (152)
42 TIGR02187 GlrX_arch Glutaredox 99.7 5.6E-17 1.2E-21 147.2 17.5 177 30-296 17-197 (215)
43 PRK13190 putative peroxiredoxi 99.7 6.6E-18 1.4E-22 151.5 11.2 119 173-302 4-134 (202)
44 PRK15000 peroxidase; Provision 99.7 1.2E-17 2.5E-22 149.4 12.7 159 172-358 3-180 (200)
45 PTZ00056 glutathione peroxidas 99.7 2.7E-17 5.9E-22 147.0 15.0 122 7-133 14-161 (199)
46 PLN02399 phospholipid hydroper 99.7 1.2E-17 2.6E-22 151.8 11.1 121 7-133 74-217 (236)
47 PRK03147 thiol-disulfide oxido 99.7 2.2E-17 4.8E-22 144.6 12.5 120 6-132 35-154 (173)
48 TIGR02540 gpx7 putative glutat 99.7 1.2E-17 2.5E-22 143.5 10.5 115 178-303 3-138 (153)
49 PTZ00137 2-Cys peroxiredoxin; 99.7 1.8E-17 3.9E-22 152.5 12.3 161 172-359 69-244 (261)
50 cd02966 TlpA_like_family TlpA- 99.7 2E-17 4.3E-22 133.7 11.1 112 179-301 1-114 (116)
51 TIGR02661 MauD methylamine deh 99.7 2.2E-17 4.9E-22 146.7 12.3 115 6-132 46-162 (189)
52 PRK15412 thiol:disulfide inter 99.7 8.4E-18 1.8E-22 149.0 9.4 117 7-134 40-160 (185)
53 KOG0191 Thioredoxin/protein di 99.7 9.1E-17 2E-21 158.4 17.2 244 31-373 46-310 (383)
54 PTZ00253 tryparedoxin peroxida 99.7 3.7E-17 8E-22 146.5 12.9 160 172-359 7-183 (199)
55 PRK13599 putative peroxiredoxi 99.7 2.2E-17 4.8E-22 149.0 11.3 120 172-301 3-135 (215)
56 PRK14018 trifunctional thiored 99.7 2.5E-17 5.5E-22 164.7 12.7 118 8-133 34-156 (521)
57 PLN02412 probable glutathione 99.7 1.4E-17 3.1E-22 144.9 9.4 119 9-133 6-147 (167)
58 cd02969 PRX_like1 Peroxiredoxi 99.7 4.3E-17 9.3E-22 142.7 11.8 119 9-134 1-127 (171)
59 cd03012 TlpA_like_DipZ_like Tl 99.7 3E-17 6.5E-22 136.3 9.9 105 22-133 13-122 (126)
60 cd02971 PRX_family Peroxiredox 99.7 5.2E-17 1.1E-21 137.1 11.6 116 177-303 2-128 (140)
61 cd03016 PRX_1cys Peroxiredoxin 99.7 6.7E-17 1.5E-21 145.2 12.4 119 173-302 1-134 (203)
62 PRK09437 bcp thioredoxin-depen 99.7 5.6E-17 1.2E-21 139.5 11.3 122 4-133 2-136 (154)
63 TIGR00385 dsbE periplasmic pro 99.7 1.8E-17 3.8E-22 145.4 8.2 116 7-133 35-154 (173)
64 PRK13191 putative peroxiredoxi 99.7 6.2E-17 1.3E-21 146.2 11.6 123 172-304 8-143 (215)
65 PRK00522 tpx lipid hydroperoxi 99.7 7.8E-17 1.7E-21 140.4 11.5 120 6-134 18-148 (167)
66 cd03014 PRX_Atyp2cys Peroxired 99.7 8.3E-17 1.8E-21 136.6 10.7 118 8-134 2-127 (143)
67 cd02970 PRX_like2 Peroxiredoxi 99.7 1.4E-16 3E-21 135.8 11.4 113 177-301 2-146 (149)
68 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 1.1E-16 2.3E-21 132.2 10.3 107 178-301 1-109 (123)
69 cd02968 SCO SCO (an acronym fo 99.7 1.2E-16 2.7E-21 135.2 10.7 116 177-301 2-140 (142)
70 cd02968 SCO SCO (an acronym fo 99.7 2.4E-16 5.2E-21 133.4 12.2 118 11-132 1-139 (142)
71 cd03018 PRX_AhpE_like Peroxire 99.7 2E-16 4.4E-21 135.0 11.8 122 7-134 2-131 (149)
72 cd03017 PRX_BCP Peroxiredoxin 99.7 1.4E-16 3E-21 134.6 10.6 115 11-133 2-126 (140)
73 TIGR01626 ytfJ_HI0045 conserve 99.7 1.7E-16 3.7E-21 138.4 11.3 135 172-332 24-183 (184)
74 PRK13189 peroxiredoxin; Provis 99.7 2.1E-16 4.6E-21 143.5 11.6 120 172-302 10-143 (222)
75 COG1225 Bcp Peroxiredoxin [Pos 99.7 3.4E-16 7.3E-21 131.9 11.7 120 5-132 3-135 (157)
76 PLN02919 haloacid dehalogenase 99.7 2.9E-16 6.2E-21 171.5 13.5 119 173-302 393-520 (1057)
77 cd02966 TlpA_like_family TlpA- 99.7 4.9E-16 1.1E-20 125.4 11.2 112 14-132 1-113 (116)
78 PTZ00256 glutathione peroxidas 99.7 2.6E-16 5.6E-21 139.2 9.9 120 9-133 17-164 (183)
79 cd03015 PRX_Typ2cys Peroxiredo 99.7 4.4E-16 9.4E-21 136.6 11.2 117 8-134 1-137 (173)
80 TIGR02540 gpx7 putative glutat 99.7 3.3E-16 7.2E-21 134.5 9.2 116 13-133 3-136 (153)
81 TIGR03137 AhpC peroxiredoxin. 99.7 6.6E-16 1.4E-20 137.0 10.9 117 7-133 3-135 (187)
82 cd02971 PRX_family Peroxiredox 99.7 1.4E-15 3.1E-20 128.3 12.2 117 11-135 1-128 (140)
83 PRK13728 conjugal transfer pro 99.6 1.2E-15 2.5E-20 132.4 11.6 96 175-299 53-151 (181)
84 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 7.4E-16 1.6E-20 127.1 9.7 106 13-132 1-108 (123)
85 COG0450 AhpC Peroxiredoxin [Po 99.6 1.1E-15 2.5E-20 131.4 10.5 161 171-359 3-180 (194)
86 KOG0190 Protein disulfide isom 99.6 6.1E-15 1.3E-19 145.0 15.1 71 31-129 41-111 (493)
87 cd02970 PRX_like2 Peroxiredoxi 99.6 2.5E-15 5.5E-20 128.0 10.4 115 11-133 1-146 (149)
88 PRK13190 putative peroxiredoxi 99.6 3.8E-15 8.2E-20 133.6 10.2 119 7-133 3-133 (202)
89 PTZ00253 tryparedoxin peroxida 99.6 7.3E-15 1.6E-19 131.7 11.3 126 1-133 1-143 (199)
90 cd02950 TxlA TRX-like protein 99.6 1.5E-14 3.3E-19 122.3 12.5 98 195-337 18-115 (142)
91 PRK10606 btuE putative glutath 99.6 8E-15 1.7E-19 128.7 10.8 82 176-269 4-94 (183)
92 PRK13599 putative peroxiredoxi 99.6 7.4E-15 1.6E-19 132.6 10.5 120 7-133 3-135 (215)
93 PLN02919 haloacid dehalogenase 99.6 5.2E-15 1.1E-19 161.7 10.8 121 6-133 391-519 (1057)
94 cd02985 TRX_CDSP32 TRX family, 99.6 2.6E-14 5.6E-19 114.3 10.2 75 195-301 13-87 (103)
95 PRK13191 putative peroxiredoxi 99.6 2.3E-14 5E-19 129.5 11.1 120 7-133 8-140 (215)
96 PTZ00137 2-Cys peroxiredoxin; 99.5 3.6E-14 7.9E-19 130.7 11.8 123 5-134 67-205 (261)
97 PRK10382 alkyl hydroperoxide r 99.5 4E-14 8.7E-19 125.0 11.3 120 7-134 3-136 (187)
98 PRK15000 peroxidase; Provision 99.5 3.7E-14 8.1E-19 126.8 10.1 119 8-133 4-141 (200)
99 cd03016 PRX_1cys Peroxiredoxin 99.5 6.9E-14 1.5E-18 125.7 11.8 118 8-133 1-133 (203)
100 cd02954 DIM1 Dim1 family; Dim1 99.5 9.7E-14 2.1E-18 111.5 9.8 72 196-301 13-84 (114)
101 cd03013 PRX5_like Peroxiredoxi 99.5 8E-14 1.7E-18 119.8 9.9 118 173-302 1-138 (155)
102 TIGR01626 ytfJ_HI0045 conserve 99.5 6.4E-14 1.4E-18 122.3 9.0 117 6-134 23-164 (184)
103 KOG0910 Thioredoxin-like prote 99.5 8.7E-14 1.9E-18 115.2 9.2 72 197-302 61-132 (150)
104 cd02948 TRX_NDPK TRX domain, T 99.5 1.2E-13 2.5E-18 110.2 9.7 72 196-301 16-87 (102)
105 PRK13189 peroxiredoxin; Provis 99.5 1.6E-13 3.4E-18 124.7 11.7 121 5-133 8-142 (222)
106 PRK13728 conjugal transfer pro 99.5 5.9E-14 1.3E-18 121.8 8.3 97 10-131 53-151 (181)
107 TIGR02738 TrbB type-F conjugat 99.5 1.2E-13 2.7E-18 117.7 9.7 80 197-299 50-133 (153)
108 cd02954 DIM1 Dim1 family; Dim1 99.5 2.5E-13 5.5E-18 109.1 9.7 72 31-133 13-84 (114)
109 cd02950 TxlA TRX-like protein 99.5 8.9E-14 1.9E-18 117.6 7.1 89 16-132 2-92 (142)
110 cd02963 TRX_DnaJ TRX domain, D 99.5 3.6E-13 7.7E-18 109.2 10.2 73 196-301 23-95 (111)
111 PHA02278 thioredoxin-like prot 99.5 2.6E-13 5.6E-18 108.0 9.0 76 196-301 13-88 (103)
112 cd02985 TRX_CDSP32 TRX family, 99.5 2.5E-13 5.5E-18 108.5 8.8 75 29-132 12-86 (103)
113 TIGR01130 ER_PDI_fam protein d 99.5 2.5E-12 5.5E-17 129.9 17.8 68 31-122 17-84 (462)
114 cd02999 PDI_a_ERp44_like PDIa 99.5 3.2E-13 6.9E-18 107.3 8.8 71 193-297 14-84 (100)
115 PF02630 SCO1-SenC: SCO1/SenC; 99.4 1E-12 2.2E-17 115.1 12.5 120 9-132 29-170 (174)
116 PRK10606 btuE putative glutath 99.4 1.1E-12 2.4E-17 115.2 12.6 78 10-90 3-88 (183)
117 cd02956 ybbN ybbN protein fami 99.4 9.1E-13 2E-17 103.7 10.1 72 196-301 11-82 (96)
118 cd02951 SoxW SoxW family; SoxW 99.4 2.7E-12 5.9E-17 106.2 10.9 87 196-302 12-103 (125)
119 KOG0907 Thioredoxin [Posttrans 99.4 1.2E-12 2.6E-17 104.4 8.3 69 197-300 21-89 (106)
120 cd02999 PDI_a_ERp44_like PDIa 99.4 1.1E-12 2.5E-17 104.1 8.2 68 28-122 14-81 (100)
121 COG3118 Thioredoxin domain-con 99.4 1.3E-12 2.7E-17 119.7 9.0 72 196-301 42-113 (304)
122 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 1.3E-12 2.8E-17 103.9 7.6 72 195-300 16-87 (101)
123 PHA02278 thioredoxin-like prot 99.4 2E-12 4.3E-17 102.9 7.9 75 31-132 13-87 (103)
124 PRK09381 trxA thioredoxin; Pro 99.4 5.9E-12 1.3E-16 101.5 10.6 71 197-301 21-91 (109)
125 TIGR02740 TraF-like TraF-like 99.3 3.6E-12 7.8E-17 119.1 9.8 86 189-298 158-243 (271)
126 KOG0910 Thioredoxin-like prote 99.3 1.9E-12 4E-17 107.3 6.9 71 31-132 60-130 (150)
127 cd03006 PDI_a_EFP1_N PDIa fami 99.3 3.7E-12 8E-17 103.1 8.5 71 196-300 28-99 (113)
128 cd03013 PRX5_like Peroxiredoxi 99.3 5.5E-12 1.2E-16 108.3 10.1 117 8-133 1-137 (155)
129 cd02963 TRX_DnaJ TRX domain, D 99.3 4.3E-12 9.3E-17 102.8 8.8 74 29-132 21-94 (111)
130 cd02948 TRX_NDPK TRX domain, T 99.3 4.5E-12 9.7E-17 101.0 8.8 71 31-132 16-86 (102)
131 cd03003 PDI_a_ERdj5_N PDIa fam 99.3 3.4E-12 7.4E-17 101.5 7.5 70 30-130 16-85 (101)
132 cd02956 ybbN ybbN protein fami 99.3 7.7E-12 1.7E-16 98.4 9.0 70 31-131 11-80 (96)
133 cd02962 TMX2 TMX2 family; comp 99.3 9.8E-12 2.1E-16 105.8 10.0 75 196-303 46-126 (152)
134 cd03000 PDI_a_TMX3 PDIa family 99.3 2.2E-11 4.9E-16 97.3 11.6 71 196-297 14-84 (104)
135 cd02953 DsbDgamma DsbD gamma f 99.3 9.1E-12 2E-16 99.6 9.2 77 196-301 10-90 (104)
136 TIGR02738 TrbB type-F conjugat 99.3 3.8E-12 8.2E-17 108.6 7.3 88 21-131 43-133 (153)
137 cd02994 PDI_a_TMX PDIa family, 99.3 1.6E-11 3.5E-16 97.5 10.2 69 196-298 16-84 (101)
138 PRK10996 thioredoxin 2; Provis 99.3 1.8E-11 3.9E-16 103.2 11.0 72 196-301 51-122 (139)
139 cd03004 PDI_a_ERdj5_C PDIa fam 99.3 1E-11 2.3E-16 99.2 8.8 71 197-300 19-89 (104)
140 cd03006 PDI_a_EFP1_N PDIa fami 99.3 1.1E-11 2.5E-16 100.2 8.7 64 31-121 28-92 (113)
141 PF13098 Thioredoxin_2: Thiore 99.3 8.1E-12 1.8E-16 101.1 7.8 96 196-301 4-99 (112)
142 PF02630 SCO1-SenC: SCO1/SenC; 99.3 2.2E-11 4.7E-16 106.7 10.8 121 173-301 28-171 (174)
143 PLN00410 U5 snRNP protein, DIM 99.3 4.1E-11 8.9E-16 100.1 11.5 72 196-301 22-95 (142)
144 cd02989 Phd_like_TxnDC9 Phosdu 99.3 3E-11 6.5E-16 98.1 10.4 70 197-301 22-91 (113)
145 cd02996 PDI_a_ERp44 PDIa famil 99.3 3.5E-11 7.6E-16 96.9 10.6 74 197-298 18-91 (108)
146 cd02993 PDI_a_APS_reductase PD 99.3 2.1E-11 4.5E-16 98.4 9.1 72 196-298 20-92 (109)
147 cd02986 DLP Dim1 family, Dim1- 99.3 1.6E-11 3.4E-16 98.0 8.0 71 196-300 13-83 (114)
148 cd02959 ERp19 Endoplasmic reti 99.3 8.1E-12 1.8E-16 102.0 6.6 76 193-300 15-92 (117)
149 KOG0191 Thioredoxin/protein di 99.3 7.5E-12 1.6E-16 123.5 7.2 133 197-373 47-185 (383)
150 cd03002 PDI_a_MPD1_like PDI fa 99.3 3.5E-11 7.5E-16 96.9 9.5 68 197-295 18-85 (109)
151 cd02984 TRX_PICOT TRX domain, 99.3 3.7E-11 7.9E-16 94.6 9.3 71 197-301 14-84 (97)
152 cd02962 TMX2 TMX2 family; comp 99.2 4.3E-11 9.3E-16 101.9 10.2 75 31-135 46-126 (152)
153 cd03005 PDI_a_ERp46 PDIa famil 99.2 3.3E-11 7.1E-16 95.7 8.9 71 199-300 18-88 (102)
154 cd03004 PDI_a_ERdj5_C PDIa fam 99.2 3.6E-11 7.9E-16 96.0 8.8 65 31-122 18-82 (104)
155 cd02986 DLP Dim1 family, Dim1- 99.2 3.5E-11 7.6E-16 96.0 8.3 69 31-130 13-81 (114)
156 PF00085 Thioredoxin: Thioredo 99.2 9.1E-11 2E-15 93.1 10.7 70 197-300 17-86 (103)
157 cd03065 PDI_b_Calsequestrin_N 99.2 5.2E-11 1.1E-15 97.1 9.4 71 198-300 28-102 (120)
158 cd02949 TRX_NTR TRX domain, no 99.2 7.3E-11 1.6E-15 93.1 9.8 72 196-301 12-83 (97)
159 cd02957 Phd_like Phosducin (Ph 99.2 3.4E-11 7.4E-16 97.8 8.1 71 197-303 24-94 (113)
160 KOG0907 Thioredoxin [Posttrans 99.2 2.7E-11 5.8E-16 96.6 7.2 70 31-132 20-89 (106)
161 cd03000 PDI_a_TMX3 PDIa family 99.2 6.4E-11 1.4E-15 94.7 9.0 67 31-121 14-80 (104)
162 cd02965 HyaE HyaE family; HyaE 99.2 4.2E-11 9.1E-16 95.6 7.7 73 196-302 26-100 (111)
163 cd02992 PDI_a_QSOX PDIa family 99.2 1.4E-10 3.1E-15 94.3 10.8 75 197-300 19-93 (114)
164 cd02996 PDI_a_ERp44 PDIa famil 99.2 8.1E-11 1.8E-15 94.7 9.2 71 31-129 17-90 (108)
165 TIGR01126 pdi_dom protein disu 99.2 8.4E-11 1.8E-15 93.1 9.1 72 196-298 12-83 (102)
166 PTZ00443 Thioredoxin domain-co 99.2 1.4E-10 2.9E-15 105.0 11.1 71 197-301 52-122 (224)
167 cd02994 PDI_a_TMX PDIa family, 99.2 6.8E-11 1.5E-15 93.9 8.2 69 30-129 15-83 (101)
168 cd03005 PDI_a_ERp46 PDIa famil 99.2 5.2E-11 1.1E-15 94.5 7.3 69 34-130 18-86 (102)
169 cd02951 SoxW SoxW family; SoxW 99.2 8.2E-11 1.8E-15 97.3 8.7 85 31-132 12-101 (125)
170 COG1999 Uncharacterized protei 99.2 3.5E-10 7.6E-15 101.6 13.2 115 14-132 49-186 (207)
171 TIGR02740 TraF-like TraF-like 99.2 2.8E-11 6E-16 113.2 6.3 87 23-130 157-243 (271)
172 TIGR01130 ER_PDI_fam protein d 99.2 1E-09 2.2E-14 110.9 18.2 179 43-296 246-431 (462)
173 TIGR01068 thioredoxin thioredo 99.2 2.3E-10 5E-15 90.3 10.6 70 197-300 14-83 (101)
174 cd02993 PDI_a_APS_reductase PD 99.2 1E-10 2.2E-15 94.4 8.6 67 31-122 20-87 (109)
175 PLN00410 U5 snRNP protein, DIM 99.2 1E-10 2.2E-15 97.7 8.7 68 31-128 22-89 (142)
176 KOG0852 Alkyl hydroperoxide re 99.2 3.5E-10 7.6E-15 95.1 11.8 122 174-305 7-144 (196)
177 PTZ00051 thioredoxin; Provisio 99.2 1.1E-10 2.5E-15 92.0 8.4 71 197-302 18-88 (98)
178 cd03002 PDI_a_MPD1_like PDI fa 99.2 8.8E-11 1.9E-15 94.5 7.9 67 31-122 17-83 (109)
179 cd02997 PDI_a_PDIR PDIa family 99.2 1.7E-10 3.6E-15 91.9 9.3 76 196-301 16-91 (104)
180 PRK09381 trxA thioredoxin; Pro 99.2 1.3E-10 2.7E-15 93.7 8.6 71 31-132 20-90 (109)
181 cd02953 DsbDgamma DsbD gamma f 99.2 1.9E-10 4.2E-15 91.8 9.5 75 31-130 10-87 (104)
182 COG3118 Thioredoxin domain-con 99.2 6.9E-11 1.5E-15 108.3 7.5 71 31-132 42-112 (304)
183 PRK10996 thioredoxin 2; Provis 99.1 1.8E-10 4E-15 97.1 9.1 71 31-132 51-121 (139)
184 PTZ00062 glutaredoxin; Provisi 99.1 5.6E-10 1.2E-14 99.4 11.2 60 33-132 18-77 (204)
185 TIGR02187 GlrX_arch Glutaredox 99.1 1.1E-10 2.5E-15 105.8 6.9 70 196-298 18-90 (215)
186 cd02992 PDI_a_QSOX PDIa family 99.1 4.5E-10 9.8E-15 91.3 9.3 69 32-122 19-87 (114)
187 cd03001 PDI_a_P5 PDIa family, 99.1 7.4E-10 1.6E-14 88.0 10.3 65 197-294 18-82 (103)
188 cd02949 TRX_NTR TRX domain, no 99.1 4.7E-10 1E-14 88.5 9.0 71 31-132 12-82 (97)
189 cd02965 HyaE HyaE family; HyaE 99.1 3.6E-10 7.8E-15 90.3 8.2 71 31-132 26-98 (111)
190 KOG0908 Thioredoxin-like prote 99.1 2.3E-10 5.1E-15 101.5 7.8 92 196-337 20-111 (288)
191 cd02989 Phd_like_TxnDC9 Phosdu 99.1 5.2E-10 1.1E-14 90.8 9.3 70 31-132 21-90 (113)
192 cd02952 TRP14_like Human TRX-r 99.1 2.6E-10 5.6E-15 92.8 7.1 79 196-300 20-106 (119)
193 COG1999 Uncharacterized protei 99.1 1.9E-09 4.2E-14 96.8 13.4 115 179-301 49-187 (207)
194 cd02984 TRX_PICOT TRX domain, 99.1 5.3E-10 1.1E-14 87.9 8.6 70 32-132 14-83 (97)
195 PF13098 Thioredoxin_2: Thiore 99.1 3.9E-10 8.4E-15 91.2 7.8 96 30-132 3-98 (112)
196 cd02997 PDI_a_PDIR PDIa family 99.1 5.7E-10 1.2E-14 88.8 8.7 73 31-130 16-88 (104)
197 COG0450 AhpC Peroxiredoxin [Po 99.1 6.3E-10 1.4E-14 96.1 9.4 121 6-132 3-139 (194)
198 cd02987 Phd_like_Phd Phosducin 99.1 6.5E-10 1.4E-14 97.2 9.6 88 197-324 83-170 (175)
199 PF00085 Thioredoxin: Thioredo 99.1 6.2E-10 1.3E-14 88.2 8.4 70 31-131 16-85 (103)
200 cd02998 PDI_a_ERp38 PDIa famil 99.1 6E-10 1.3E-14 88.7 8.4 74 197-300 18-91 (105)
201 cd02959 ERp19 Endoplasmic reti 99.1 3.2E-10 7E-15 92.5 6.9 76 28-132 15-92 (117)
202 cd02955 SSP411 TRX domain, SSP 99.1 2.8E-09 6.1E-14 87.6 12.4 84 195-303 13-99 (124)
203 cd02952 TRP14_like Human TRX-r 99.1 2.9E-10 6.2E-15 92.5 6.4 81 30-133 19-107 (119)
204 TIGR01126 pdi_dom protein disu 99.1 4.5E-10 9.7E-15 88.9 7.3 70 31-128 12-81 (102)
205 KOG0190 Protein disulfide isom 99.1 2.8E-09 6E-14 105.4 14.3 90 196-333 383-474 (493)
206 PTZ00051 thioredoxin; Provisio 99.0 7.2E-10 1.6E-14 87.4 7.9 70 31-132 17-86 (98)
207 cd03065 PDI_b_Calsequestrin_N 99.0 6.8E-10 1.5E-14 90.6 7.9 71 32-131 27-101 (120)
208 cd02957 Phd_like Phosducin (Ph 99.0 6.4E-10 1.4E-14 90.3 7.7 68 32-132 24-91 (113)
209 TIGR01295 PedC_BrcD bacterioci 99.0 1.5E-09 3.3E-14 89.2 10.0 79 197-301 23-106 (122)
210 KOG2792 Putative cytochrome C 99.0 4.3E-09 9.4E-14 94.1 13.4 126 171-303 111-260 (280)
211 PTZ00443 Thioredoxin domain-co 99.0 6.4E-10 1.4E-14 100.6 8.3 69 32-131 52-120 (224)
212 KOG0855 Alkyl hydroperoxide re 99.0 8.5E-10 1.9E-14 91.8 8.2 115 170-296 62-186 (211)
213 COG0386 BtuE Glutathione perox 99.0 6.7E-09 1.4E-13 85.9 12.9 117 176-303 4-145 (162)
214 cd02975 PfPDO_like_N Pyrococcu 99.0 2.6E-09 5.6E-14 86.7 10.5 63 197-293 22-84 (113)
215 PTZ00062 glutaredoxin; Provisi 99.0 8.4E-10 1.8E-14 98.3 8.1 80 198-335 18-97 (204)
216 KOG2792 Putative cytochrome C 99.0 3.8E-09 8.3E-14 94.4 12.0 119 11-133 118-258 (280)
217 cd02961 PDI_a_family Protein D 99.0 1.3E-09 2.9E-14 85.5 8.4 73 197-300 15-87 (101)
218 KOG0855 Alkyl hydroperoxide re 99.0 1.3E-09 2.7E-14 90.8 8.2 113 5-122 62-183 (211)
219 cd02998 PDI_a_ERp38 PDIa famil 99.0 1.5E-09 3.3E-14 86.4 8.3 68 31-122 17-84 (105)
220 cd03001 PDI_a_P5 PDIa family, 99.0 1.6E-09 3.4E-14 86.1 8.1 64 32-122 18-81 (103)
221 TIGR00411 redox_disulf_1 small 99.0 4.7E-09 1E-13 79.7 9.7 62 200-297 2-63 (82)
222 TIGR01068 thioredoxin thioredo 99.0 2.9E-09 6.2E-14 84.0 8.6 69 32-131 14-82 (101)
223 TIGR00424 APS_reduc 5'-adenyly 99.0 2.5E-09 5.4E-14 106.3 10.1 69 196-295 370-438 (463)
224 cd02988 Phd_like_VIAF Phosduci 99.0 2.2E-09 4.7E-14 95.2 8.2 69 197-303 102-170 (192)
225 TIGR01295 PedC_BrcD bacterioci 98.9 5.2E-09 1.1E-13 86.0 9.0 80 31-132 22-105 (122)
226 cd02975 PfPDO_like_N Pyrococcu 98.9 4.3E-09 9.3E-14 85.4 8.4 64 31-122 21-84 (113)
227 cd02995 PDI_a_PDI_a'_C PDIa fa 98.9 3.1E-09 6.7E-14 84.4 7.4 67 197-295 18-84 (104)
228 cd02955 SSP411 TRX domain, SSP 98.9 9.3E-09 2E-13 84.5 9.9 83 29-133 12-97 (124)
229 PLN02309 5'-adenylylsulfate re 98.9 6.7E-09 1.5E-13 103.2 10.6 68 196-294 364-432 (457)
230 cd02961 PDI_a_family Protein D 98.9 6.8E-09 1.5E-13 81.4 8.4 67 31-122 14-80 (101)
231 cd02947 TRX_family TRX family; 98.9 1.6E-08 3.5E-13 77.7 9.2 68 198-300 11-78 (93)
232 cd02995 PDI_a_PDI_a'_C PDIa fa 98.8 1.2E-08 2.6E-13 81.0 8.1 66 31-122 17-82 (104)
233 cd02960 AGR Anterior Gradient 98.8 1.6E-08 3.5E-13 83.1 8.8 101 195-332 21-123 (130)
234 cd02987 Phd_like_Phd Phosducin 98.8 9.2E-09 2E-13 90.0 7.6 67 33-132 84-150 (175)
235 PTZ00102 disulphide isomerase; 98.8 2.5E-08 5.5E-13 101.4 12.0 72 196-297 48-119 (477)
236 PRK00293 dipZ thiol:disulfide 98.8 1.7E-08 3.7E-13 104.2 10.6 74 195-298 472-548 (571)
237 TIGR00424 APS_reduc 5'-adenyly 98.8 1.1E-08 2.5E-13 101.6 8.6 68 31-122 370-437 (463)
238 KOG0908 Thioredoxin-like prote 98.8 8.8E-09 1.9E-13 91.7 6.2 68 26-121 15-82 (288)
239 KOG0912 Thiol-disulfide isomer 98.8 3.4E-08 7.4E-13 90.3 9.1 94 197-332 13-106 (375)
240 PLN02309 5'-adenylylsulfate re 98.7 3.4E-08 7.4E-13 98.2 8.8 67 31-122 364-431 (457)
241 cd02947 TRX_family TRX family; 98.7 6.2E-08 1.3E-12 74.4 8.5 67 32-130 10-76 (93)
242 COG2077 Tpx Peroxiredoxin [Pos 98.7 1.3E-07 2.8E-12 78.0 10.2 119 172-303 19-149 (158)
243 cd02982 PDI_b'_family Protein 98.7 7.6E-08 1.7E-12 76.4 8.6 64 197-293 12-77 (103)
244 TIGR00411 redox_disulf_1 small 98.7 7.9E-08 1.7E-12 72.9 7.8 58 35-119 2-59 (82)
245 cd02988 Phd_like_VIAF Phosduci 98.7 6.6E-08 1.4E-12 85.8 8.0 67 32-133 102-168 (192)
246 PHA02125 thioredoxin-like prot 98.7 1.2E-07 2.6E-12 70.9 8.2 57 201-300 2-58 (75)
247 KOG4277 Uncharacterized conser 98.7 2.4E-08 5.3E-13 90.9 4.8 75 198-303 44-118 (468)
248 cd02973 TRX_GRX_like Thioredox 98.7 1.2E-07 2.5E-12 69.1 7.5 64 200-300 2-65 (67)
249 PRK00293 dipZ thiol:disulfide 98.6 7.3E-08 1.6E-12 99.6 8.7 74 30-130 472-548 (571)
250 KOG1651 Glutathione peroxidase 98.6 2.3E-07 5E-12 77.9 9.7 119 175-303 12-154 (171)
251 cd02958 UAS UAS family; UAS is 98.6 4.4E-07 9.5E-12 73.7 10.9 78 193-301 13-94 (114)
252 cd03007 PDI_a_ERp29_N PDIa fam 98.6 3.2E-07 7E-12 74.1 9.8 71 196-296 17-91 (116)
253 KOG0854 Alkyl hydroperoxide re 98.6 5.3E-07 1.2E-11 76.0 11.1 119 173-301 8-147 (224)
254 TIGR00412 redox_disulf_2 small 98.6 1.3E-07 2.8E-12 70.9 6.9 59 202-299 3-61 (76)
255 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 2.4E-07 5.2E-12 71.6 7.3 71 193-300 8-78 (89)
256 KOG4277 Uncharacterized conser 98.6 5.9E-08 1.3E-12 88.5 4.4 76 32-134 43-118 (468)
257 PF07649 C1_3: C1-like domain; 98.5 1.8E-08 3.9E-13 61.0 0.4 29 360-388 1-30 (30)
258 PF13728 TraF: F plasmid trans 98.5 4.2E-07 9.1E-12 82.1 9.3 84 193-300 116-199 (215)
259 cd02982 PDI_b'_family Protein 98.5 3.8E-07 8.2E-12 72.3 7.7 64 32-122 12-77 (103)
260 COG0386 BtuE Glutathione perox 98.5 1.6E-06 3.6E-11 71.9 10.7 116 12-133 5-143 (162)
261 cd02960 AGR Anterior Gradient 98.5 5.3E-07 1.2E-11 74.2 7.4 94 30-158 21-117 (130)
262 TIGR02739 TraF type-F conjugat 98.5 1E-06 2.2E-11 81.2 10.0 85 192-300 145-229 (256)
263 cd02973 TRX_GRX_like Thioredox 98.4 7.5E-07 1.6E-11 64.8 7.0 56 36-119 3-58 (67)
264 TIGR03143 AhpF_homolog putativ 98.4 1E-05 2.2E-10 83.9 17.7 178 28-300 362-542 (555)
265 PHA02125 thioredoxin-like prot 98.4 6.4E-07 1.4E-11 66.9 6.3 50 36-118 2-51 (75)
266 cd03007 PDI_a_ERp29_N PDIa fam 98.4 8.2E-07 1.8E-11 71.7 7.2 66 31-122 17-89 (116)
267 PF00255 GSHPx: Glutathione pe 98.4 1.6E-06 3.4E-11 69.2 8.6 59 179-248 3-62 (108)
268 TIGR00412 redox_disulf_2 small 98.4 9.4E-07 2E-11 66.2 6.9 54 36-119 2-55 (76)
269 KOG1731 FAD-dependent sulfhydr 98.4 1.2E-06 2.6E-11 86.9 8.8 68 33-122 58-125 (606)
270 PF13899 Thioredoxin_7: Thiore 98.4 1.9E-06 4.1E-11 65.6 7.6 44 30-76 15-61 (82)
271 PF00255 GSHPx: Glutathione pe 98.4 2.8E-06 6.1E-11 67.7 8.8 60 14-76 3-62 (108)
272 PRK13703 conjugal pilus assemb 98.3 2.2E-06 4.7E-11 78.5 9.2 82 193-298 139-220 (248)
273 PF13728 TraF: F plasmid trans 98.3 1.7E-06 3.6E-11 78.3 7.7 80 27-127 115-194 (215)
274 PF03107 C1_2: C1 domain; Int 98.3 4.2E-07 9.1E-12 54.9 2.3 29 360-388 1-30 (30)
275 KOG0852 Alkyl hydroperoxide re 98.3 4.4E-06 9.5E-11 70.7 9.0 119 8-132 6-139 (196)
276 PF13899 Thioredoxin_7: Thiore 98.3 1.5E-06 3.3E-11 66.1 5.8 45 195-249 15-62 (82)
277 PF14595 Thioredoxin_9: Thiore 98.3 1.2E-06 2.5E-11 72.7 5.5 77 194-301 38-114 (129)
278 COG0526 TrxA Thiol-disulfide i 98.2 5.7E-06 1.2E-10 65.8 8.3 72 24-121 24-97 (127)
279 cd03026 AhpF_NTD_C TRX-GRX-lik 98.2 3.9E-06 8.5E-11 64.8 6.9 65 27-119 7-71 (89)
280 smart00594 UAS UAS domain. 98.2 1.3E-05 2.8E-10 65.9 10.3 70 195-295 25-97 (122)
281 COG2077 Tpx Peroxiredoxin [Pos 98.2 2E-05 4.3E-10 65.3 11.0 127 5-140 17-154 (158)
282 KOG0912 Thiol-disulfide isomer 98.2 2.5E-06 5.5E-11 78.3 6.4 74 32-131 13-86 (375)
283 cd02958 UAS UAS family; UAS is 98.2 2.9E-05 6.4E-10 62.9 11.4 78 28-132 13-93 (114)
284 TIGR02739 TraF type-F conjugat 98.1 6.1E-06 1.3E-10 76.0 7.2 78 27-122 145-222 (256)
285 KOG1731 FAD-dependent sulfhydr 98.1 3.2E-06 7E-11 83.9 4.9 69 198-294 58-126 (606)
286 PRK13703 conjugal pilus assemb 98.1 7.9E-06 1.7E-10 74.8 6.8 78 27-122 138-215 (248)
287 cd01659 TRX_superfamily Thiore 98.1 2.1E-05 4.6E-10 55.1 7.6 63 201-294 1-63 (69)
288 COG0526 TrxA Thiol-disulfide i 98.1 1.4E-05 3E-10 63.5 7.2 71 193-296 28-100 (127)
289 PF00837 T4_deiodinase: Iodoth 97.9 4.5E-05 9.8E-10 68.7 8.5 117 171-302 73-218 (237)
290 smart00594 UAS UAS domain. 97.9 3.3E-05 7.2E-10 63.4 7.0 69 29-122 24-95 (122)
291 PRK11509 hydrogenase-1 operon 97.9 0.00015 3.3E-09 59.8 10.4 69 200-301 37-107 (132)
292 PF03190 Thioredox_DsbH: Prote 97.8 0.00012 2.7E-09 62.5 9.4 84 192-301 32-119 (163)
293 cd01659 TRX_superfamily Thiore 97.8 9.7E-05 2.1E-09 51.6 7.2 62 36-122 1-62 (69)
294 KOG1651 Glutathione peroxidase 97.7 0.00019 4E-09 60.6 8.6 65 10-76 12-76 (171)
295 COG2143 Thioredoxin-related pr 97.7 0.00072 1.6E-08 56.4 11.3 85 195-300 40-131 (182)
296 PF14595 Thioredoxin_9: Thiore 97.7 0.00012 2.6E-09 60.6 6.9 74 28-132 37-113 (129)
297 COG4232 Thiol:disulfide interc 97.7 8.4E-05 1.8E-09 74.9 6.9 74 31-129 473-547 (569)
298 TIGR02196 GlrX_YruB Glutaredox 97.6 0.00044 9.5E-09 50.5 8.4 56 201-291 2-57 (74)
299 KOG0854 Alkyl hydroperoxide re 97.6 0.00027 5.8E-09 60.0 7.8 123 1-130 1-144 (224)
300 TIGR02200 GlrX_actino Glutared 97.6 0.00035 7.5E-09 51.8 7.8 63 201-300 2-65 (77)
301 cd02991 UAS_ETEA UAS family, E 97.6 0.00055 1.2E-08 55.6 9.1 74 195-300 15-95 (116)
302 KOG0914 Thioredoxin-like prote 97.6 9.3E-05 2E-09 65.0 4.6 90 197-321 144-240 (265)
303 COG4232 Thiol:disulfide interc 97.5 0.00015 3.2E-09 73.1 6.5 77 196-300 473-550 (569)
304 TIGR02180 GRX_euk Glutaredoxin 97.5 0.00024 5.2E-09 53.7 5.5 59 36-118 1-59 (84)
305 TIGR02196 GlrX_YruB Glutaredox 97.4 0.00059 1.3E-08 49.8 7.0 56 36-120 2-57 (74)
306 TIGR02180 GRX_euk Glutaredoxin 97.4 0.00032 6.9E-09 53.1 5.4 65 201-298 1-65 (84)
307 PF06110 DUF953: Eukaryotic pr 97.4 0.0007 1.5E-08 55.0 7.5 77 197-299 19-104 (119)
308 PRK11657 dsbG disulfide isomer 97.3 0.0023 5E-08 59.3 11.3 93 196-300 116-235 (251)
309 PRK10877 protein disulfide iso 97.3 0.0038 8.3E-08 57.2 12.3 87 196-298 106-214 (232)
310 COG2143 Thioredoxin-related pr 97.3 0.0014 3E-08 54.7 8.1 90 29-132 39-131 (182)
311 PF03190 Thioredox_DsbH: Prote 97.3 0.00027 5.8E-09 60.4 3.8 88 23-132 28-118 (163)
312 TIGR02200 GlrX_actino Glutared 97.2 0.0014 3.1E-08 48.5 7.2 22 36-57 2-23 (77)
313 PF06110 DUF953: Eukaryotic pr 97.2 0.0017 3.6E-08 52.7 7.3 73 30-122 17-98 (119)
314 PF13192 Thioredoxin_3: Thiore 97.2 0.0069 1.5E-07 45.1 10.1 58 205-301 6-63 (76)
315 PRK11200 grxA glutaredoxin 1; 97.1 0.0049 1.1E-07 46.9 8.7 66 201-299 3-70 (85)
316 cd03020 DsbA_DsbC_DsbG DsbA fa 97.1 0.0041 9E-08 55.4 9.5 95 190-298 70-184 (197)
317 cd02340 ZZ_NBR1_like Zinc fing 96.9 0.0005 1.1E-08 45.1 1.8 31 361-391 2-33 (43)
318 cd03020 DsbA_DsbC_DsbG DsbA fa 96.9 0.009 1.9E-07 53.3 10.3 96 25-130 70-184 (197)
319 PRK15317 alkyl hydroperoxide r 96.8 0.065 1.4E-06 55.2 17.0 69 194-299 113-181 (517)
320 PF00837 T4_deiodinase: Iodoth 96.8 0.0011 2.5E-08 59.8 3.5 66 7-73 74-142 (237)
321 cd02991 UAS_ETEA UAS family, E 96.7 0.012 2.7E-07 47.7 8.7 66 29-122 14-85 (116)
322 PF00462 Glutaredoxin: Glutare 96.7 0.012 2.5E-07 41.5 7.4 55 201-290 1-55 (60)
323 PF02114 Phosducin: Phosducin; 96.6 0.011 2.4E-07 55.1 8.6 71 197-303 146-216 (265)
324 KOG0914 Thioredoxin-like prote 96.6 0.0023 5.1E-08 56.4 3.8 92 30-153 142-240 (265)
325 cd02972 DsbA_family DsbA famil 96.5 0.0074 1.6E-07 46.2 5.8 82 201-292 1-91 (98)
326 PF13192 Thioredoxin_3: Thiore 96.4 0.0084 1.8E-07 44.6 5.8 58 39-132 5-62 (76)
327 TIGR03140 AhpF alkyl hydropero 96.4 0.22 4.8E-06 51.3 17.8 64 193-290 113-176 (515)
328 PRK11657 dsbG disulfide isomer 96.3 0.014 3.1E-07 54.1 7.9 91 31-129 116-232 (251)
329 PRK10877 protein disulfide iso 96.3 0.033 7.2E-07 51.0 10.2 85 30-120 105-209 (232)
330 PF13848 Thioredoxin_6: Thiore 96.3 0.37 8.1E-06 41.8 16.7 68 197-297 94-164 (184)
331 cd02339 ZZ_Mind_bomb Zinc fing 96.3 0.0025 5.4E-08 42.2 1.7 30 361-390 2-33 (45)
332 cd03019 DsbA_DsbA DsbA family, 96.2 0.023 5E-07 49.3 8.2 33 196-228 14-46 (178)
333 PF05988 DUF899: Bacterial pro 96.2 0.05 1.1E-06 48.3 9.9 112 176-300 45-171 (211)
334 PRK11509 hydrogenase-1 operon 96.2 0.034 7.3E-07 46.0 8.4 77 26-132 26-106 (132)
335 cd03419 GRX_GRXh_1_2_like Glut 96.1 0.015 3.2E-07 43.6 5.5 57 36-118 2-58 (82)
336 cd02972 DsbA_family DsbA famil 96.0 0.022 4.8E-07 43.5 6.3 83 36-121 1-91 (98)
337 cd03419 GRX_GRXh_1_2_like Glut 96.0 0.016 3.4E-07 43.4 5.2 63 201-298 2-64 (82)
338 KOG0911 Glutaredoxin-related p 95.9 0.0091 2E-07 53.2 3.9 70 196-300 16-85 (227)
339 PF04592 SelP_N: Selenoprotein 95.8 0.094 2E-06 47.2 10.0 116 176-302 9-127 (238)
340 COG0678 AHP1 Peroxiredoxin [Po 95.8 0.038 8.2E-07 46.1 6.8 117 172-301 4-145 (165)
341 KOG3425 Uncharacterized conser 95.8 0.019 4.1E-07 45.9 4.9 72 31-122 24-104 (128)
342 cd02976 NrdH NrdH-redoxin (Nrd 95.7 0.054 1.2E-06 39.1 6.9 55 201-290 2-56 (73)
343 TIGR03143 AhpF_homolog putativ 95.7 0.043 9.2E-07 57.1 8.6 70 193-296 362-431 (555)
344 cd02976 NrdH NrdH-redoxin (Nrd 95.6 0.058 1.3E-06 38.9 6.7 55 36-119 2-56 (73)
345 PF00462 Glutaredoxin: Glutare 95.6 0.074 1.6E-06 37.3 7.0 55 36-119 1-55 (60)
346 PRK11200 grxA glutaredoxin 1; 95.5 0.048 1E-06 41.4 6.2 39 36-78 3-41 (85)
347 KOG1672 ATP binding protein [P 95.5 0.055 1.2E-06 47.1 7.1 90 196-323 83-172 (211)
348 KOG3425 Uncharacterized conser 95.5 0.044 9.5E-07 43.9 6.0 71 197-293 25-104 (128)
349 PF05988 DUF899: Bacterial pro 95.3 0.086 1.9E-06 46.8 7.8 118 8-133 42-172 (211)
350 PF05176 ATP-synt_10: ATP10 pr 95.2 0.22 4.7E-06 46.1 10.7 133 176-329 100-250 (252)
351 KOG0913 Thiol-disulfide isomer 95.1 0.0064 1.4E-07 54.4 0.3 70 200-302 42-111 (248)
352 cd02066 GRX_family Glutaredoxi 95.1 0.16 3.5E-06 36.2 7.8 61 201-299 2-62 (72)
353 TIGR02183 GRXA Glutaredoxin, G 94.8 0.054 1.2E-06 41.3 4.7 24 201-224 2-25 (86)
354 TIGR02190 GlrX-dom Glutaredoxi 94.8 0.1 2.2E-06 39.0 6.2 61 199-298 8-68 (79)
355 KOG0911 Glutaredoxin-related p 94.8 0.02 4.2E-07 51.1 2.4 63 31-121 16-78 (227)
356 PF09695 YtfJ_HI0045: Bacteria 94.7 0.53 1.2E-05 39.9 10.7 119 189-329 29-158 (160)
357 PHA03050 glutaredoxin; Provisi 94.7 0.067 1.4E-06 42.8 5.1 61 36-119 15-75 (108)
358 PF13462 Thioredoxin_4: Thiore 94.6 0.11 2.4E-06 44.2 6.8 50 25-75 5-54 (162)
359 PRK10329 glutaredoxin-like pro 94.6 0.44 9.6E-06 35.8 9.2 54 201-290 3-56 (81)
360 TIGR02189 GlrX-like_plant Glut 94.6 0.13 2.7E-06 40.5 6.4 20 201-220 10-29 (99)
361 cd03023 DsbA_Com1_like DsbA fa 94.6 0.06 1.3E-06 45.2 4.9 39 31-73 4-42 (154)
362 cd02249 ZZ Zinc finger, ZZ typ 94.6 0.023 5E-07 37.8 1.8 33 360-392 1-34 (46)
363 PHA03050 glutaredoxin; Provisi 94.5 0.057 1.2E-06 43.2 4.3 21 201-221 15-35 (108)
364 COG4312 Uncharacterized protei 94.3 0.099 2.1E-06 46.4 5.6 93 177-282 52-153 (247)
365 TIGR02190 GlrX-dom Glutaredoxi 94.3 0.17 3.6E-06 37.8 6.2 56 34-119 8-63 (79)
366 cd03418 GRX_GRXb_1_3_like Glut 94.3 0.23 5E-06 36.3 7.0 60 201-298 2-62 (75)
367 TIGR02181 GRX_bact Glutaredoxi 94.1 0.17 3.6E-06 37.6 6.0 59 202-298 2-60 (79)
368 TIGR02189 GlrX-like_plant Glut 94.0 0.22 4.8E-06 39.0 6.7 57 36-118 10-66 (99)
369 cd03023 DsbA_Com1_like DsbA fa 94.0 0.1 2.2E-06 43.8 5.1 30 197-226 5-34 (154)
370 PF11009 DUF2847: Protein of u 93.9 0.39 8.5E-06 38.0 7.7 76 31-133 18-94 (105)
371 PF02114 Phosducin: Phosducin; 93.8 0.16 3.6E-06 47.3 6.6 68 32-132 146-213 (265)
372 cd03029 GRX_hybridPRX5 Glutare 93.8 0.27 5.8E-06 35.8 6.5 59 201-298 3-61 (72)
373 KOG0913 Thiol-disulfide isomer 93.8 0.0093 2E-07 53.4 -1.8 69 34-132 41-109 (248)
374 TIGR02183 GRXA Glutaredoxin, G 93.7 0.16 3.5E-06 38.6 5.2 37 36-76 2-38 (86)
375 PF04592 SelP_N: Selenoprotein 93.6 0.37 7.9E-06 43.5 8.0 114 10-132 8-125 (238)
376 PF13462 Thioredoxin_4: Thiore 93.6 0.26 5.7E-06 41.8 7.0 50 190-247 5-54 (162)
377 cd02066 GRX_family Glutaredoxi 93.2 0.25 5.4E-06 35.2 5.4 54 36-118 2-55 (72)
378 cd03027 GRX_DEP Glutaredoxin ( 93.2 0.46 1E-05 34.6 6.9 60 201-298 3-62 (73)
379 cd03029 GRX_hybridPRX5 Glutare 92.7 0.44 9.6E-06 34.6 6.1 53 36-118 3-55 (72)
380 TIGR02194 GlrX_NrdH Glutaredox 92.6 0.51 1.1E-05 34.4 6.3 53 202-290 2-54 (72)
381 KOG3414 Component of the U4/U6 92.5 0.77 1.7E-05 37.2 7.5 71 197-300 23-94 (142)
382 PF11009 DUF2847: Protein of u 92.3 0.72 1.6E-05 36.5 7.2 76 197-302 19-95 (105)
383 PRK15317 alkyl hydroperoxide r 92.3 0.29 6.2E-06 50.5 6.4 62 30-119 114-175 (517)
384 PRK10329 glutaredoxin-like pro 92.3 0.62 1.3E-05 35.0 6.5 34 36-78 3-36 (81)
385 TIGR02181 GRX_bact Glutaredoxi 92.2 0.27 5.8E-06 36.5 4.5 53 37-118 2-54 (79)
386 KOG2603 Oligosaccharyltransfer 92.1 2.1 4.5E-05 40.3 11.0 84 190-298 53-141 (331)
387 COG0678 AHP1 Peroxiredoxin [Po 92.0 0.58 1.3E-05 39.2 6.5 121 6-133 3-145 (165)
388 TIGR02194 GlrX_NrdH Glutaredox 91.9 0.63 1.4E-05 33.9 6.1 33 37-78 2-34 (72)
389 PF13911 AhpC-TSA_2: AhpC/TSA 91.9 0.69 1.5E-05 37.1 6.9 53 219-282 2-54 (115)
390 cd03418 GRX_GRXb_1_3_like Glut 91.8 0.47 1E-05 34.6 5.4 21 36-56 2-22 (75)
391 cd02335 ZZ_ADA2 Zinc finger, Z 91.8 0.12 2.5E-06 34.9 1.9 32 360-391 1-34 (49)
392 COG1331 Highly conserved prote 91.6 0.28 6.1E-06 50.9 5.2 79 196-300 42-124 (667)
393 TIGR00365 monothiol glutaredox 91.5 0.84 1.8E-05 35.6 6.8 63 198-298 12-78 (97)
394 cd03028 GRX_PICOT_like Glutare 91.4 0.88 1.9E-05 34.8 6.7 64 197-298 7-74 (90)
395 cd03027 GRX_DEP Glutaredoxin ( 91.4 0.58 1.3E-05 34.1 5.5 55 36-119 3-57 (73)
396 cd03028 GRX_PICOT_like Glutare 91.4 1.1 2.3E-05 34.4 7.1 62 30-121 5-70 (90)
397 KOG3507 DNA-directed RNA polym 91.2 0.087 1.9E-06 36.2 0.8 24 360-383 21-47 (62)
398 cd03019 DsbA_DsbA DsbA family, 91.2 0.3 6.5E-06 42.2 4.4 40 31-73 14-53 (178)
399 PF05768 DUF836: Glutaredoxin- 91.2 0.84 1.8E-05 34.2 6.2 56 201-292 2-57 (81)
400 PRK10638 glutaredoxin 3; Provi 91.2 1.1 2.3E-05 33.7 6.9 60 201-298 4-63 (83)
401 KOG3414 Component of the U4/U6 90.9 1.5 3.2E-05 35.6 7.5 65 31-122 22-86 (142)
402 PF00130 C1_1: Phorbol esters/ 90.5 0.21 4.7E-06 34.0 2.3 35 358-392 10-47 (53)
403 COG0695 GrxC Glutaredoxin and 90.5 1.4 3E-05 33.0 6.8 20 36-55 3-22 (80)
404 KOG0541 Alkyl hydroperoxide re 90.1 0.61 1.3E-05 39.3 4.9 72 4-77 7-89 (171)
405 TIGR03140 AhpF alkyl hydropero 90.0 0.68 1.5E-05 47.7 6.4 62 30-119 115-176 (515)
406 PF13778 DUF4174: Domain of un 89.9 3 6.6E-05 33.8 8.9 91 192-302 3-96 (118)
407 COG4312 Uncharacterized protei 89.4 0.98 2.1E-05 40.3 5.9 94 12-111 52-153 (247)
408 COG0695 GrxC Glutaredoxin and 89.3 1.9 4.2E-05 32.2 6.8 20 201-220 3-22 (80)
409 cd02983 P5_C P5 family, C-term 89.3 2.6 5.7E-05 34.8 8.2 51 214-296 41-93 (130)
410 PF02966 DIM1: Mitosis protein 88.9 5.6 0.00012 32.7 9.5 63 31-121 19-81 (133)
411 TIGR00365 monothiol glutaredox 88.9 1.1 2.5E-05 34.8 5.5 60 31-119 10-73 (97)
412 PF02966 DIM1: Mitosis protein 88.8 2.6 5.6E-05 34.6 7.5 58 197-288 20-77 (133)
413 cd00029 C1 Protein kinase C co 88.7 0.26 5.6E-06 33.0 1.5 35 358-392 10-47 (50)
414 KOG1752 Glutaredoxin and relat 88.6 2.5 5.4E-05 33.5 7.2 21 36-56 16-36 (104)
415 cd02343 ZZ_EF Zinc finger, ZZ 88.4 0.24 5.2E-06 33.1 1.1 30 361-390 2-32 (48)
416 PRK10824 glutaredoxin-4; Provi 88.3 0.85 1.8E-05 36.8 4.5 27 31-57 13-43 (115)
417 KOG1752 Glutaredoxin and relat 88.3 2.1 4.6E-05 33.8 6.6 15 201-215 16-30 (104)
418 cd02341 ZZ_ZZZ3 Zinc finger, Z 88.0 0.32 7E-06 32.6 1.6 32 360-391 1-36 (48)
419 PRK10638 glutaredoxin 3; Provi 87.7 1.4 3.1E-05 33.0 5.2 54 36-118 4-57 (83)
420 PF09695 YtfJ_HI0045: Bacteria 87.3 5.6 0.00012 33.9 8.8 119 8-133 3-141 (160)
421 PRK10954 periplasmic protein d 86.3 0.71 1.5E-05 41.4 3.3 50 21-73 24-78 (207)
422 smart00291 ZnF_ZZ Zinc-binding 86.1 0.54 1.2E-05 30.8 1.8 32 359-390 4-36 (44)
423 cd02342 ZZ_UBA_plant Zinc fing 85.3 0.56 1.2E-05 30.4 1.5 31 361-391 2-34 (43)
424 PRK10824 glutaredoxin-4; Provi 84.7 1.9 4.2E-05 34.8 4.8 24 198-221 15-42 (115)
425 KOG4498 Uncharacterized conser 84.6 1.9 4.2E-05 37.5 4.9 55 18-74 35-91 (197)
426 KOG0541 Alkyl hydroperoxide re 82.9 5.8 0.00012 33.6 6.9 101 189-301 34-151 (171)
427 cd02334 ZZ_dystrophin Zinc fin 82.7 0.85 1.8E-05 30.7 1.6 30 361-390 2-33 (49)
428 COG4545 Glutaredoxin-related p 82.6 5.4 0.00012 29.3 5.7 71 202-299 5-77 (85)
429 cd02337 ZZ_CBP Zinc finger, ZZ 82.4 0.87 1.9E-05 29.4 1.5 33 360-393 1-34 (41)
430 PF07449 HyaE: Hydrogenase-1 e 81.2 1.2 2.6E-05 35.4 2.3 26 274-300 72-97 (107)
431 PF01216 Calsequestrin: Calseq 80.9 24 0.00053 34.0 11.1 74 198-303 52-130 (383)
432 KOG2603 Oligosaccharyltransfer 80.8 10 0.00022 35.8 8.5 79 28-130 56-141 (331)
433 PRK12759 bifunctional gluaredo 79.7 3.9 8.5E-05 40.8 5.9 63 201-290 4-66 (410)
434 KOG1672 ATP binding protein [P 79.4 4.1 8.9E-05 35.8 5.1 70 31-132 83-152 (211)
435 COG1331 Highly conserved prote 79.4 5.7 0.00012 41.6 7.0 81 28-132 39-124 (667)
436 PRK10954 periplasmic protein d 78.5 1.9 4E-05 38.7 2.9 34 195-228 35-71 (207)
437 cd02338 ZZ_PCMF_like Zinc fing 78.5 1.4 3.1E-05 29.6 1.6 31 361-391 2-34 (49)
438 cd03073 PDI_b'_ERp72_ERp57 PDI 77.1 10 0.00022 30.3 6.6 51 212-295 33-88 (111)
439 cd02344 ZZ_HERC2 Zinc finger, 77.0 1.8 3.9E-05 28.6 1.8 30 361-390 2-33 (45)
440 smart00109 C1 Protein kinase C 77.0 0.9 2E-05 30.0 0.3 35 358-392 10-46 (49)
441 cd03072 PDI_b'_ERp44 PDIb' fam 75.4 21 0.00046 28.4 8.0 50 213-295 30-84 (111)
442 PRK12759 bifunctional gluaredo 74.3 6.8 0.00015 39.1 5.9 21 36-56 4-24 (410)
443 PF05176 ATP-synt_10: ATP10 pr 73.8 14 0.0003 34.3 7.4 116 11-132 100-232 (252)
444 PHA03075 glutaredoxin-like pro 73.2 4.2 9.1E-05 32.5 3.2 29 33-61 2-30 (123)
445 PLN03098 LPA1 LOW PSII ACCUMUL 73.1 60 0.0013 32.7 11.9 108 184-302 284-429 (453)
446 PF00569 ZZ: Zinc finger, ZZ t 72.0 1.2 2.7E-05 29.5 -0.0 32 359-390 4-37 (46)
447 PF13848 Thioredoxin_6: Thiore 72.0 18 0.0004 30.9 7.5 64 32-122 94-160 (184)
448 PF12760 Zn_Tnp_IS1595: Transp 69.9 4.1 8.8E-05 26.9 2.2 23 360-382 19-46 (46)
449 KOG3170 Conserved phosducin-li 68.4 15 0.00034 32.4 5.9 69 197-304 111-180 (240)
450 cd02978 KaiB_like KaiB-like fa 68.2 20 0.00044 26.2 5.6 63 199-293 2-64 (72)
451 PF05768 DUF836: Glutaredoxin- 68.0 4.4 9.5E-05 30.2 2.3 56 36-121 2-57 (81)
452 KOG2507 Ubiquitin regulatory p 67.7 45 0.00098 33.0 9.4 29 274-302 67-95 (506)
453 PHA03075 glutaredoxin-like pro 67.4 7.3 0.00016 31.2 3.4 30 198-227 2-31 (123)
454 cd02983 P5_C P5 family, C-term 66.3 23 0.00049 29.1 6.4 48 49-122 41-90 (130)
455 PF07449 HyaE: Hydrogenase-1 e 65.9 39 0.00085 26.8 7.3 29 100-132 69-97 (107)
456 PF10571 UPF0547: Uncharacteri 65.1 4.1 9E-05 23.4 1.2 23 361-383 2-24 (26)
457 PF13909 zf-H2C2_5: C2H2-type 64.4 3.7 8E-05 22.7 1.0 9 374-382 1-9 (24)
458 cd02345 ZZ_dah Zinc finger, ZZ 63.5 4.9 0.00011 27.0 1.6 30 361-390 2-33 (49)
459 cd03060 GST_N_Omega_like GST_N 63.4 38 0.00082 24.0 6.5 18 203-220 3-20 (71)
460 PRK11788 tetratricopeptide rep 63.2 12 0.00026 36.4 5.1 22 359-380 354-375 (389)
461 KOG4582 Uncharacterized conser 61.9 3.9 8.6E-05 38.5 1.2 32 360-391 153-186 (278)
462 PF06053 DUF929: Domain of unk 61.7 9.4 0.0002 35.2 3.6 32 31-62 57-88 (249)
463 PF03604 DNA_RNApol_7kD: DNA d 61.4 4 8.6E-05 24.8 0.8 24 360-383 1-27 (32)
464 COG1198 PriA Primosomal protei 61.3 16 0.00036 39.1 5.8 70 239-329 349-418 (730)
465 TIGR00595 priA primosomal prot 59.0 36 0.00079 35.0 7.7 47 239-294 129-175 (505)
466 PHA00626 hypothetical protein 58.9 8 0.00017 26.6 1.9 15 370-384 20-34 (59)
467 cd03060 GST_N_Omega_like GST_N 58.6 26 0.00056 24.9 4.9 31 38-75 3-33 (71)
468 PRK09301 circadian clock prote 58.4 36 0.00079 26.8 5.8 67 196-294 4-70 (103)
469 KOG4301 Beta-dystrobrevin [Cyt 57.4 4.9 0.00011 38.2 1.0 38 357-394 238-277 (434)
470 cd03073 PDI_b'_ERp72_ERp57 PDI 56.3 78 0.0017 25.1 7.7 48 48-122 34-86 (111)
471 COG1651 DsbG Protein-disulfide 55.7 36 0.00078 31.0 6.5 44 19-62 71-114 (244)
472 TIGR02654 circ_KaiB circadian 54.9 48 0.001 25.3 5.8 65 198-294 3-67 (87)
473 COG1651 DsbG Protein-disulfide 54.7 20 0.00043 32.7 4.6 44 183-227 71-114 (244)
474 COG2761 FrnE Predicted dithiol 54.7 35 0.00076 31.0 5.9 40 34-74 5-45 (225)
475 PF13743 Thioredoxin_5: Thiore 53.8 20 0.00043 31.2 4.2 27 203-229 2-28 (176)
476 cd02978 KaiB_like KaiB-like fa 53.8 26 0.00056 25.7 4.1 63 34-122 2-64 (72)
477 COG4545 Glutaredoxin-related p 53.1 59 0.0013 24.0 5.7 72 37-130 5-76 (85)
478 smart00659 RPOLCX RNA polymera 52.9 11 0.00023 24.8 1.8 24 360-383 3-29 (44)
479 COG0525 ValS Valyl-tRNA synthe 52.3 23 0.00051 38.5 5.1 19 283-301 286-304 (877)
480 KOG0696 Serine/threonine prote 52.2 4.4 9.5E-05 40.0 -0.2 31 359-389 56-89 (683)
481 cd02977 ArsC_family Arsenate R 52.0 39 0.00085 26.3 5.3 20 37-56 2-21 (105)
482 PF13778 DUF4174: Domain of un 51.7 91 0.002 25.1 7.5 89 27-132 3-94 (118)
483 PF00628 PHD: PHD-finger; Int 51.4 15 0.00033 24.4 2.4 32 362-393 2-34 (51)
484 PF09723 Zn-ribbon_8: Zinc rib 51.2 9 0.00019 24.7 1.2 14 370-383 2-15 (42)
485 PRK09301 circadian clock prote 51.1 28 0.00061 27.4 4.1 66 31-122 4-69 (103)
486 COG2331 Uncharacterized protei 50.7 7.2 0.00016 28.6 0.7 16 367-382 6-21 (82)
487 KOG2640 Thioredoxin [Function 50.2 6.3 0.00014 37.2 0.5 73 198-303 77-149 (319)
488 KOG3171 Conserved phosducin-li 49.5 28 0.00061 31.2 4.3 70 196-301 158-227 (273)
489 PF10058 DUF2296: Predicted in 48.8 16 0.00034 25.2 2.1 24 358-381 21-52 (54)
490 PF09673 TrbC_Ftype: Type-F co 48.2 79 0.0017 25.2 6.5 20 103-122 61-80 (113)
491 TIGR02654 circ_KaiB circadian 47.9 34 0.00073 26.1 4.0 64 33-122 3-66 (87)
492 TIGR00373 conserved hypothetic 47.7 6.2 0.00014 33.8 0.0 25 360-384 110-139 (158)
493 PRK10220 hypothetical protein; 47.5 14 0.0003 29.2 1.9 25 360-387 4-34 (111)
494 KOG4498 Uncharacterized conser 47.0 38 0.00082 29.7 4.7 56 182-247 35-92 (197)
495 cd03031 GRX_GRX_like Glutaredo 46.0 88 0.0019 26.4 6.7 13 208-220 15-27 (147)
496 PF06953 ArsD: Arsenical resis 45.9 1.1E+02 0.0025 24.9 7.1 63 215-302 25-87 (123)
497 COG2888 Predicted Zn-ribbon RN 45.6 9.1 0.0002 26.7 0.6 20 361-382 40-59 (61)
498 PF01323 DSBA: DSBA-like thior 44.0 48 0.0011 28.6 5.2 28 200-227 1-28 (193)
499 cd03035 ArsC_Yffb Arsenate Red 43.9 60 0.0013 25.5 5.2 20 37-56 2-21 (105)
500 PRK01655 spxA transcriptional 43.2 45 0.00097 27.4 4.5 21 36-56 2-22 (131)
No 1
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.92 E-value=1.9e-24 Score=180.79 Aligned_cols=130 Identities=51% Similarity=1.004 Sum_probs=118.9
Q ss_pred CcccCCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHH
Q 015833 179 GYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYF 258 (399)
Q Consensus 179 ~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 258 (399)
||..+.+|+ .+++++++||+|+|+||++||++|+.++|.|.++++++++. +.+++|++|++|.+.+++++++
T Consensus 1 ~~l~~~~G~-~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~-------~~~~~vv~is~d~~~~~~~~~~ 72 (131)
T cd03009 1 DFLLRNDGG-KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKES-------GKNFEIVFISWDRDEESFNDYF 72 (131)
T ss_pred CcccccCCC-CccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhc-------CCCEEEEEEECCCCHHHHHHHH
Confidence 345588999 99999999999999999999999999999999999999764 3479999999999999999999
Q ss_pred hcCCCcccccCC-chhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCC
Q 015833 259 GTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF 316 (399)
Q Consensus 259 ~~~~~~~~p~~~-d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~ 316 (399)
++++|..+|+.. +....+++.|++.++|+++|||++|+++.++++.++..+|..+|||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 73 SKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred HcCCeeEcccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 999998888765 5567899999999999999999999999999999999999999997
No 2
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.90 E-value=7.8e-24 Score=178.26 Aligned_cols=124 Identities=27% Similarity=0.537 Sum_probs=106.2
Q ss_pred eeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCC--Cccc
Q 015833 189 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP--WLAL 266 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~--~~~~ 266 (399)
.+++++++||+|+|+|||+||++|++++|.|.++|++++++. .-+...+++||+|+.|.+.+.+++|+++++ |+.+
T Consensus 17 ~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~--~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~ 94 (146)
T cd03008 17 REIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEF--YVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFL 94 (146)
T ss_pred cccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhc--ccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceee
Confidence 567889999999999999999999999999999999887530 000124699999999998888999999988 7777
Q ss_pred ccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCC
Q 015833 267 PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAY 314 (399)
Q Consensus 267 p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~ 314 (399)
|+..+....+++.|++.++|+++|||++|+|+.+++...+..+|..+|
T Consensus 95 p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 95 PFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred cccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 887766779999999999999999999999999999888877775553
No 3
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.90 E-value=1.9e-23 Score=174.76 Aligned_cols=129 Identities=50% Similarity=0.942 Sum_probs=119.3
Q ss_pred EecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCccccc
Q 015833 17 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY 96 (399)
Q Consensus 17 l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~ 96 (399)
|.|.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++.+.+++|++|++|.+.+.+.++.++++|..+++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~ 82 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPF 82 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEccc
Confidence 56899999999999999999999999999999999999999999987645699999999999999999999999988888
Q ss_pred CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccchhhhhhcCCCCCCC
Q 015833 97 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 148 (399)
Q Consensus 97 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~~~~p~ 148 (399)
.+.+....+.+.|++.++|+++||++ +|+++.+++.+++..++..+||+
T Consensus 83 ~~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 83 SDRERRSRLNRTFKIEGIPTLIILDA---DGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred CCHHHHHHHHHHcCCCCCCEEEEECC---CCCEEcccHHHHHhhcccccCCC
Confidence 66455578999999999999999999 99999999999999999999986
No 4
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.89 E-value=1.1e-22 Score=170.34 Aligned_cols=127 Identities=50% Similarity=0.946 Sum_probs=111.4
Q ss_pred ccCCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhc
Q 015833 181 LLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT 260 (399)
Q Consensus 181 ~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 260 (399)
.+|.+ + .+++++++||+++|+||++||++|+.++|.|+++++++++. ..+++|++|++|.+.+++++++++
T Consensus 3 ~~~~~-~-~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~-------~~~v~vi~Vs~d~~~~~~~~~~~~ 73 (132)
T cd02964 3 LLDGE-G-VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEE-------GKNFEIVFVSRDRSEESFNEYFSE 73 (132)
T ss_pred cccCC-c-cccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhc-------CCCeEEEEEecCCCHHHHHHHHhc
Confidence 34444 5 89999999999999999999999999999999999999753 247999999999998999999998
Q ss_pred C-CCcccccCC-chhHHHHHhCCCCccceEEEECCCCcEEecccchhhhh-hcccCCCC
Q 015833 261 M-PWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINL-YQENAYPF 316 (399)
Q Consensus 261 ~-~~~~~p~~~-d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~-~g~~~~p~ 316 (399)
+ +|..+++.. +....+++.|+|.++|+++|||++|+|+.+++...+.. +|..+||+
T Consensus 74 ~~~~~~~~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 74 MPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred CCCeEeeccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 8 688888755 34568889999999999999999999999999888866 89999886
No 5
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.89 E-value=8.7e-23 Score=171.91 Aligned_cols=119 Identities=30% Similarity=0.581 Sum_probs=105.9
Q ss_pred EEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcC-----CCcEEEEEEecCCChHHHHHhHhcCC--Cccccc
Q 015833 24 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN-----GSDFEVVFVSSDEDLNAFNNYRACMP--WLAVPY 96 (399)
Q Consensus 24 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-----~~~~~ii~Vs~D~~~~~~~~~~~~~~--~~~~~~ 96 (399)
.++|++++||+|+|+|||+|||+|+.++|.|.+++++++++ ++++++|+||.|.+.+.+.+|+++++ |+.+|+
T Consensus 17 ~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~ 96 (146)
T cd03008 17 REIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPF 96 (146)
T ss_pred cccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecc
Confidence 46788999999999999999999999999999999998753 24699999999999999999999887 878887
Q ss_pred CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccchhhhhhcCCCCC
Q 015833 97 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAF 146 (399)
Q Consensus 97 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~~~~ 146 (399)
.+. ....+.+.|++.++|+++|||+ +|+++..++.+.++++|..+|
T Consensus 97 ~~~-~~~~l~~~y~v~~iPt~vlId~---~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 97 EDE-FRRELEAQFSVEELPTVVVLKP---DGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred cch-HHHHHHHHcCCCCCCEEEEECC---CCcEEeeChHHHHHHHHHHHH
Confidence 553 3368999999999999999999 999999999999999887654
No 6
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.88 E-value=4.1e-22 Score=166.93 Aligned_cols=126 Identities=47% Similarity=0.863 Sum_probs=111.4
Q ss_pred cCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcC-CCcccccC
Q 015833 19 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM-PWLAVPYS 97 (399)
Q Consensus 19 d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~-~~~~~~~~ 97 (399)
|.+ +++++++++||+++|+||++||++|+.++|.|+++++++++.+.+++|++|++|.+.+++.++.+++ +|..+++.
T Consensus 5 ~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~ 83 (132)
T cd02964 5 DGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFE 83 (132)
T ss_pred cCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccC
Confidence 444 5899999999999999999999999999999999999998763459999999999999999999998 68888886
Q ss_pred ChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccchhhhhh-cCCCCCCC
Q 015833 98 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYK-YGIRAFPF 148 (399)
Q Consensus 98 d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~-~g~~~~p~ 148 (399)
+......+.+.|+|.++|+++||++ +|+++.+++.+.+.. ++..+|||
T Consensus 84 d~~~~~~~~~~~~v~~iPt~~lid~---~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 84 DEELRELLEKQFKVEGIPTLVVLKP---DGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cHHHHHHHHHHcCCCCCCEEEEECC---CCCEEchhHHHHHHhCcccccCCC
Confidence 6444578889999999999999999 999999999776555 89988886
No 7
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.84 E-value=1.3e-20 Score=160.60 Aligned_cols=119 Identities=29% Similarity=0.470 Sum_probs=106.7
Q ss_pred hhcCCCCccc-C--CCCCceeeccccCCcEEEEEEecC-CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 173 LTNHDRGYLL-G--HPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 173 ~g~~~p~f~l-~--~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
+|..+|+|.+ + .+|+ .+++++++||+++|+||++ |||+|..++|.+.+++++|+++ ++.+++|+.+
T Consensus 2 ~G~~~P~~~~~~~~~~g~-~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~---------~v~~v~v~~~ 71 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGK-PVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK---------GVDVVGVSSD 71 (146)
T ss_dssp TTSB--CCEEEEEETTSE-EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT---------TCEEEEEEES
T ss_pred CCCCCCCeEEEeecCCCC-EecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC---------ceEEEEeccc
Confidence 5889999998 5 9999 9999999999999999999 9999999999999999999876 8999999999
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCC---------ccceEEEECCCCcEEecccc
Q 015833 249 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~~ 303 (399)
.+.. ..+++++.+ +++|+..|.+..+.+.|++. ++|+++|||++|+|++++.+
T Consensus 72 ~~~~-~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 72 DDPP-VREFLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp SSHH-HHHHHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred CCHH-HHHHHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeC
Confidence 7766 888888755 78999999999999999998 99999999999999998543
No 8
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.83 E-value=1.7e-20 Score=156.24 Aligned_cols=129 Identities=44% Similarity=0.760 Sum_probs=118.0
Q ss_pred ccCCeEEecCCCCEEecc-ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhc-
Q 015833 11 LRRRMTSTKEIGEEVKVS-DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC- 88 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~-~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~- 88 (399)
......|.+.+|..+..+ .++||+|.++|.|.|||+|+.+.|.|.++|+++++++.+++||+||.|++.+++.+|+..
T Consensus 11 ~~~g~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~ 90 (157)
T KOG2501|consen 11 LLRGNRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH 90 (157)
T ss_pred HHcCCeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc
Confidence 344578889999888877 689999999999999999999999999999999999899999999999999999999996
Q ss_pred -CCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccchhhhhhcCC
Q 015833 89 -MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGI 143 (399)
Q Consensus 89 -~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~ 143 (399)
+.|+.+||.|... +++.+.|.|.++|+++++++ +|+++..++..++...|.
T Consensus 91 ~~~W~~iPf~d~~~-~~l~~ky~v~~iP~l~i~~~---dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 91 HGDWLAIPFGDDLI-QKLSEKYEVKGIPALVILKP---DGTVVTEDARLLVQLGGS 142 (157)
T ss_pred CCCeEEecCCCHHH-HHHHHhcccCcCceeEEecC---CCCEehHhhHHHHHhhcc
Confidence 5699999977654 99999999999999999999 999999999999888774
No 9
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.82 E-value=5.5e-20 Score=151.98 Aligned_cols=116 Identities=28% Similarity=0.548 Sum_probs=107.2
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecC-CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|.++|+|++ +.+|+ .+++++++||+++|.||++ ||++|...++.|++++++|+.+ ++.+++|+.| +
T Consensus 1 vG~~~P~f~l~~~~g~-~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~---------~~~vi~is~d-~ 69 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGK-TVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK---------GVQVIGISTD-D 69 (124)
T ss_dssp TTSBGGCEEEETTTSE-EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT---------TEEEEEEESS-S
T ss_pred CcCCCCCcEeECCCCC-EEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccc---------eEEeeecccc-c
Confidence 5889999999 99999 9999999999999999999 9999999999999999999866 8999999997 5
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEec
Q 015833 251 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~ 300 (399)
.++.+++.+..+ +.+|+..|....+++.|++. .+|+++|||++|+|+++
T Consensus 70 ~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 70 PEEIKQFLEEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHHHHHHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred ccchhhhhhhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 567888888776 88999999999999999998 99999999999999874
No 10
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.82 E-value=1.4e-19 Score=160.46 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=99.6
Q ss_pred HhhhcCCCCccc-CCCC--Cceeecccc-CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 171 NLLTNHDRGYLL-GHPP--DEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~~g--~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
...|.++|+|++ +.+| + .++++++ +||+++|+||++||++|+.++|.|.++++ + +++|++|+
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~-~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~---------~~~vi~v~ 104 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQ-FYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q---------GIRVVGMN 104 (185)
T ss_pred hhcCCCCCCcCCccCCCCCc-cccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c---------CCEEEEEE
Confidence 356889999999 7774 6 6776665 79999999999999999999999987743 3 68999999
Q ss_pred cCCCHHHHHHHHhcCCCcccc-cCCchhHHHHHhCCCCccceEEEECCCCcEEecccc
Q 015833 247 TDRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~~~~~~p-~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
.|.+.++.++++++++ +.+| +..|....+.+.|++.++|++|+||++|+|+++..+
T Consensus 105 ~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G 161 (185)
T PRK15412 105 YKDDRQKAISWLKELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAG 161 (185)
T ss_pred CCCCHHHHHHHHHHcC-CCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEec
Confidence 9888888999998876 4566 356777889999999999999999999999988654
No 11
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.82 E-value=3.1e-19 Score=156.26 Aligned_cols=148 Identities=12% Similarity=0.165 Sum_probs=121.3
Q ss_pred hcCCCCccc-CCCCCceeecccc-CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--
Q 015833 174 TNHDRGYLL-GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 249 (399)
Q Consensus 174 g~~~p~f~l-~~~g~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-- 249 (399)
|..+|+|.+ +.+|+ .++++++ +|+++||+||++||+.|..+++.|.+++++|+++ ++++++|++|.
T Consensus 1 g~~~p~f~l~~~~g~-~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~---------~v~~v~is~d~~~ 70 (171)
T cd02969 1 GSPAPDFSLPDTDGK-TYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK---------GVAVVAINSNDIE 70 (171)
T ss_pred CCcCCCccccCCCCC-EEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC---------CeEEEEEecCccc
Confidence 467899999 99999 9999998 8899999999999999999999999999999865 79999999985
Q ss_pred -----CHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHH
Q 015833 250 -----DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFL 324 (399)
Q Consensus 250 -----~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 324 (399)
+.+++++++++++ +.+|+..|....+++.|++..+|+++|||++|+|++...... ..+. ........++
T Consensus 71 ~~~~d~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~--~~~~---~~~~~~~~~~ 144 (171)
T cd02969 71 AYPEDSPENMKAKAKEHG-YPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDD--SRPG---NDPPVTGRDL 144 (171)
T ss_pred cccccCHHHHHHHHHHCC-CCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccC--Cccc---ccccccHHHH
Confidence 5788999999877 568999998999999999999999999999999998753221 1110 0123345677
Q ss_pred HHHHHHHhccCCC
Q 015833 325 EKQMEEEAKNLPR 337 (399)
Q Consensus 325 ~~~~~~~~~~~~~ 337 (399)
..+|+.++.+.+.
T Consensus 145 ~~~i~~~l~~~~~ 157 (171)
T cd02969 145 RAALDALLAGKPV 157 (171)
T ss_pred HHHHHHHHcCCCC
Confidence 7777777665544
No 12
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.81 E-value=1.7e-19 Score=142.10 Aligned_cols=93 Identities=45% Similarity=0.924 Sum_probs=84.4
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC--CCcccccCCchhH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM--PWLALPFGDPTIK 274 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~--~~~~~p~~~d~~~ 274 (399)
||+++|+||++||++|+.++|.|.++++++++. .++++|+|++|.+.++++++++++ +|..+++..+...
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~--------~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKK--------DDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNS 72 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--------CCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHH
Confidence 799999999999999999999999999999821 379999999999999999999988 8999999999899
Q ss_pred HHHHhCCCCccceEEEECCCCcE
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i 297 (399)
.+.+.|++.++|+++|+|++|+|
T Consensus 73 ~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 73 ELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHTT-TSSSEEEEEETTSBE
T ss_pred HHHHHCCCCcCCEEEEECCCCCC
Confidence 99999999999999999999986
No 13
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.81 E-value=1.8e-19 Score=146.77 Aligned_cols=110 Identities=22% Similarity=0.376 Sum_probs=96.2
Q ss_pred CCccc-CCCCCceeeccccC-CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 015833 178 RGYLL-GHPPDEKVPVSSLV-GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 255 (399)
Q Consensus 178 p~f~l-~~~g~~~~~l~~~~-gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 255 (399)
|+|.+ +.+|+ .+++++++ ||+++|+||++||++|+.++|.++++++++.+ ++.++.|+ |.+.++++
T Consensus 1 p~f~l~~~~G~-~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~----------~~~vi~v~-~~~~~~~~ 68 (114)
T cd02967 1 PTFDLTTIDGA-PVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD----------WLDVVLAS-DGEKAEHQ 68 (114)
T ss_pred CCceeecCCCC-EEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC----------CcEEEEEe-CCCHHHHH
Confidence 68899 99999 99999997 99999999999999999999999999888743 47888776 66788899
Q ss_pred HHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 256 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 256 ~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++++++...+|+..+ ..+.+.|++.++|++++||++|++++++
T Consensus 69 ~~~~~~~~~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 69 RFLKKHGLEAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HHHHHhCCCCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 9999888656777653 5688999999999999999999999874
No 14
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.81 E-value=1.9e-19 Score=150.02 Aligned_cols=121 Identities=47% Similarity=0.881 Sum_probs=111.6
Q ss_pred CCCCCceeecc-ccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhc-
Q 015833 183 GHPPDEKVPVS-SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT- 260 (399)
Q Consensus 183 ~~~g~~~~~l~-~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~- 260 (399)
..+|. .+..+ .++||+|+++|.|.||++|+.+.|.|.++|+++++. ...++||+||.|++.+++..|+..
T Consensus 19 ~~~~~-~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~-------~~~fEVvfVS~D~~~~~~~~y~~~~ 90 (157)
T KOG2501|consen 19 KQDGT-EVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDN-------AAPFEVVFVSSDRDEESLDEYMLEH 90 (157)
T ss_pred ccCCc-cchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhc-------CCceEEEEEecCCCHHHHHHHHHhc
Confidence 67777 66666 689999999999999999999999999999999876 557999999999999999999985
Q ss_pred -CCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcc
Q 015833 261 -MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQE 311 (399)
Q Consensus 261 -~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~ 311 (399)
+.|+.+|+..+..+++.+.|+|.++|++++++++|+++..+|+.++...|.
T Consensus 91 ~~~W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 91 HGDWLAIPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred CCCeEEecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 679999999999999999999999999999999999999999999988874
No 15
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.81 E-value=3.2e-19 Score=156.33 Aligned_cols=120 Identities=25% Similarity=0.477 Sum_probs=110.4
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
..|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+...+.|.++++++.+. ++++++|++|.+
T Consensus 36 ~~g~~~p~~~~~~~~g~-~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~---------~~~vi~i~~d~~ 105 (173)
T PRK03147 36 QVGKEAPNFVLTDLEGK-KIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK---------GVEIIAVNVDET 105 (173)
T ss_pred CCCCCCCCcEeecCCCC-EEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC---------CeEEEEEEcCCC
Confidence 36788999999 99999 99999999999999999999999999999999999999865 799999999999
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
.+++++++++++ +.+|+..|....+.+.|++.++|+++++|++|+++....
T Consensus 106 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~ 156 (173)
T PRK03147 106 ELAVKNFVNRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVIT 156 (173)
T ss_pred HHHHHHHHHHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEe
Confidence 899999998877 678888888899999999999999999999999997643
No 16
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.81 E-value=1.8e-19 Score=163.65 Aligned_cols=122 Identities=14% Similarity=0.184 Sum_probs=99.1
Q ss_pred HhhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-
Q 015833 171 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 248 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d- 248 (399)
...|..+|+|++ +.+|+ .+++++++||+|||+||++||++|..++|.|++++++|+++ +++||+|++|
T Consensus 73 ~~~g~~aPdF~l~d~~G~-~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~---------Gv~VIgV~~d~ 142 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGK-DVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ---------GFEILAFPCNQ 142 (236)
T ss_pred hhcCCCCCceEEECCCCC-EEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC---------CcEEEEEeccc
Confidence 356888999999 99999 99999999999999999999999999999999999999866 8999999975
Q ss_pred ------CCHHHHHHHHh-cCCCcccccCC--chhH-HHHHhC-------C------CCccceEEEECCCCcEEecccc
Q 015833 249 ------RDQTSFESYFG-TMPWLALPFGD--PTIK-ELTKYF-------D------VQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 249 ------~~~~~~~~~~~-~~~~~~~p~~~--d~~~-~~~~~~-------~------v~~~P~~~lid~~G~i~~~~~~ 303 (399)
.+.++.++++. +++ +.||+.. |.+. .++..| + +...|++||||++|+|+.+..+
T Consensus 143 ~~~~e~~s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G 219 (236)
T PLN02399 143 FGGQEPGSNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPP 219 (236)
T ss_pred ccccCCCCHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECC
Confidence 34567888874 444 7788864 3222 232222 2 3567999999999999998654
No 17
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.80 E-value=2.4e-19 Score=149.09 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=99.3
Q ss_pred CCCCccc-CCCC--CceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHH
Q 015833 176 HDRGYLL-GHPP--DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 252 (399)
Q Consensus 176 ~~p~f~l-~~~g--~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~ 252 (399)
.+|+|++ +.+| . .+++++++||+++|+||++||++|+.++|.|+++.+++ +++|++|+.+.+.+
T Consensus 2 ~~p~f~~~~~~g~~~-~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~------------~~~vv~v~~~~~~~ 68 (127)
T cd03010 2 PAPAFSLPALPGPDK-TLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG------------RVPIYGINYKDNPE 68 (127)
T ss_pred CCCCcccccccCCCc-cccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc------------CcEEEEEECCCCHH
Confidence 5799999 8888 7 89999999999999999999999999999999886553 48899999988889
Q ss_pred HHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccc
Q 015833 253 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 253 ~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
++++++++......++..|....+++.|++.++|+++++|++|+++.+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G 119 (127)
T cd03010 69 NALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVG 119 (127)
T ss_pred HHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEec
Confidence 999999887643234556778899999999999999999999999988543
No 18
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.80 E-value=5.1e-19 Score=144.07 Aligned_cols=112 Identities=19% Similarity=0.285 Sum_probs=95.2
Q ss_pred CCeEEecCCCCEEeccccC-CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCC
Q 015833 13 RRMTSTKEIGEEVKVSDLE-GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPW 91 (399)
Q Consensus 13 p~f~l~d~~G~~v~l~~~~-gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~ 91 (399)
|+|.+++.+|+.+++++++ ||+++|+||++||++|+.++|.++++++++++ ++.++.|+ |.+.+...++.+++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~-~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLAS-DGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEe-CCCHHHHHHHHHHhCC
Confidence 7999999999999999997 99999999999999999999999999888754 27788775 6778889999998875
Q ss_pred cccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccc
Q 015833 92 LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 92 ~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~ 134 (399)
..+|... ...+.+.|++..+|++++||+ +|++++++.
T Consensus 77 ~~~p~~~---~~~~~~~~~~~~~P~~~vid~---~G~v~~~~~ 113 (114)
T cd02967 77 EAFPYVL---SAELGMAYQVSKLPYAVLLDE---AGVIAAKGL 113 (114)
T ss_pred CCCcEEe---cHHHHhhcCCCCcCeEEEECC---CCeEEeccc
Confidence 4344321 156889999999999999999 999998753
No 19
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.80 E-value=3.1e-19 Score=159.56 Aligned_cols=121 Identities=18% Similarity=0.213 Sum_probs=97.8
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC--
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-- 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-- 248 (399)
..+..+|+|++ +.+|+ .+++++++||+|||+|||+||++|..++|.|++++++|+++ +++||+|++|
T Consensus 14 ~~~~~~pdf~l~d~~G~-~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~---------g~~vvgv~~~~~ 83 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGT-TVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL---------GLEILAFPTSQF 83 (199)
T ss_pred hcCCCCCceEEECCCCC-EEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC---------ceEEEEecchhc
Confidence 35678999999 99999 99999999999999999999999999999999999999866 8999999974
Q ss_pred -----CCHHHHHHHHhcCCCcccccCCc------hhHH--------HHHhCCCCc----c---ceEEEECCCCcEEeccc
Q 015833 249 -----RDQTSFESYFGTMPWLALPFGDP------TIKE--------LTKYFDVQG----I---PCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 249 -----~~~~~~~~~~~~~~~~~~p~~~d------~~~~--------~~~~~~v~~----~---P~~~lid~~G~i~~~~~ 302 (399)
.+.+++++++++.+ ++||+..| .... +...|++.+ + |++||||++|+|+.+.+
T Consensus 84 ~~~e~d~~e~~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 84 LNQEFPNTKDIRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS 162 (199)
T ss_pred cCCCCCCHHHHHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence 35678999998776 67887543 1111 223344422 2 37999999999998865
Q ss_pred c
Q 015833 303 R 303 (399)
Q Consensus 303 ~ 303 (399)
+
T Consensus 163 g 163 (199)
T PTZ00056 163 P 163 (199)
T ss_pred C
Confidence 4
No 20
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.80 E-value=6.3e-19 Score=154.61 Aligned_cols=119 Identities=22% Similarity=0.289 Sum_probs=100.7
Q ss_pred hhcCCCCccc-CCCC----CceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 173 LTNHDRGYLL-GHPP----DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g----~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
+|..+|+|.+ +.+| + .+++++++||+++|+|| ++||++|..+++.|++++++|.+. ++.|++||
T Consensus 1 vG~~aP~f~~~~~~g~~~~~-~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~---------~v~vv~Is 70 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFK-EISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL---------NAEVLGVS 70 (173)
T ss_pred CCCcCCCCEeecccCCCCce-EEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEe
Confidence 4788999999 7766 7 89999999999999999 799999999999999999999866 89999999
Q ss_pred cCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEeccc
Q 015833 247 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 302 (399)
+|.. +..+++.+.. .-++||+..|....+++.|++. .+|++||||++|+|++.+.
T Consensus 71 ~d~~-~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~ 137 (173)
T cd03015 71 TDSH-FSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITV 137 (173)
T ss_pred cCCH-HHHHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEe
Confidence 9853 3333343321 2367899999999999999986 6889999999999998853
No 21
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.80 E-value=2.1e-19 Score=149.30 Aligned_cols=106 Identities=25% Similarity=0.318 Sum_probs=96.2
Q ss_pred CCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-----CCHHHHHHHHhc
Q 015833 186 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-----RDQTSFESYFGT 260 (399)
Q Consensus 186 g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-----~~~~~~~~~~~~ 260 (399)
|+ .+++++++||+++|+||++||++|..++|.|++++++|+++ ++.+++|+.+ .+.+++++++++
T Consensus 13 ~~-~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~---------~~~vi~i~~~~~~~~~~~~~~~~~~~~ 82 (126)
T cd03012 13 DK-PLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD---------GLVVIGVHSPEFAFERDLANVKSAVLR 82 (126)
T ss_pred CC-ccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC---------CeEEEEeccCccccccCHHHHHHHHHH
Confidence 46 89999999999999999999999999999999999999865 7999999863 467888999988
Q ss_pred CCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 261 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 261 ~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
++ +.+|+..|....+.+.|++.++|+++|||++|+++++..
T Consensus 83 ~~-~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 83 YG-ITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred cC-CCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEe
Confidence 87 689999999999999999999999999999999998854
No 22
>PLN02412 probable glutathione peroxidase
Probab=99.80 E-value=2.7e-19 Score=155.84 Aligned_cols=118 Identities=15% Similarity=0.225 Sum_probs=95.9
Q ss_pred cCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC----
Q 015833 175 NHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---- 249 (399)
Q Consensus 175 ~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---- 249 (399)
..+|+|++ +.+|+ .+++++++||++||+||++||++|..++|.|++++++|+++ ++.|++|++|.
T Consensus 7 ~~~pdf~l~d~~G~-~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~---------g~~vvgv~~~~~~~~ 76 (167)
T PLN02412 7 KSIYDFTVKDIGGN-DVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ---------GFEILAFPCNQFLGQ 76 (167)
T ss_pred CCCCceEEECCCCC-EEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC---------CcEEEEecccccccC
Confidence 56899999 99999 99999999999999999999999999999999999999976 89999999862
Q ss_pred ---CHHHHHHHH-hcCCCcccccCCc--hh-HHHHHhCC-------------CCccceEEEECCCCcEEecccc
Q 015833 250 ---DQTSFESYF-GTMPWLALPFGDP--TI-KELTKYFD-------------VQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 250 ---~~~~~~~~~-~~~~~~~~p~~~d--~~-~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~~ 303 (399)
+.++..+++ ++++ ++||+..+ .+ ...+..|+ +.+.|++||||++|+++.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g 149 (167)
T PLN02412 77 EPGSNEEIQQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAP 149 (167)
T ss_pred CCCCHHHHHHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECC
Confidence 445665654 5544 78888653 22 23333332 6678999999999999998654
No 23
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.80 E-value=3.7e-19 Score=177.87 Aligned_cols=119 Identities=17% Similarity=0.271 Sum_probs=105.2
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC---
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--- 248 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d--- 248 (399)
.+..+|+|++ +.+|+ .+.++ +||+|||+|||+||++|+.++|.|++++++++.. +++||+|+++
T Consensus 34 ~~~~lP~f~l~D~dG~-~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~---------~v~VI~Vs~~~~~ 101 (521)
T PRK14018 34 VPHTLSTLKTADNRPA-SVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS---------SANLITVASPGFL 101 (521)
T ss_pred ccCCCCCeEeecCCCc-eeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC---------CeEEEEEeccccc
Confidence 4567899999 99999 88887 8999999999999999999999999999998744 7899999873
Q ss_pred --CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccc
Q 015833 249 --RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 249 --~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
.+.++++++++.+++.++|+..|....+++.|+|.++|+++|||++|+++.+..+
T Consensus 102 ~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G 158 (521)
T PRK14018 102 HEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKG 158 (521)
T ss_pred ccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeC
Confidence 3456788888888877889999999999999999999999999999999988543
No 24
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.79 E-value=4.2e-19 Score=151.24 Aligned_cols=120 Identities=25% Similarity=0.368 Sum_probs=100.6
Q ss_pred ccccccCCeEEec--CCCCEEeccccCCCEEEEEEecC-CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 7 YVQQLRRRMTSTK--EIGEEVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 7 ~~~~~~p~f~l~d--~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
++|+.+|+|++++ .+|+++++++++||+++|+||++ |||+|+.++|.|.++++.+++.+ +.+++|+.+.+.. ..
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~-~~ 77 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPP-VR 77 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHH-HH
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHH-HH
Confidence 3688999999966 99999999999999999999999 99999999999999999999886 9999999988877 78
Q ss_pred HhHhcCCCcccccCChHHHHHHHhhcCCC---------CcCeEEEEcCCCCCCCeeeccc
Q 015833 84 NYRACMPWLAVPYSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 84 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v~---------~~P~~~lid~~~~~G~i~~~~~ 134 (399)
++.++.+....-..|. ...+.+.|++. ++|++++||+ +|+|++...
T Consensus 78 ~~~~~~~~~~~~~~D~--~~~~~~~~~~~~~~~~~~~~~~P~~~lId~---~G~V~~~~~ 132 (146)
T PF08534_consen 78 EFLKKYGINFPVLSDP--DGALAKALGVTIMEDPGNGFGIPTTFLIDK---DGKVVYRHV 132 (146)
T ss_dssp HHHHHTTTTSEEEEET--TSHHHHHTTCEEECCTTTTSSSSEEEEEET---TSBEEEEEE
T ss_pred HHHHhhCCCceEEech--HHHHHHHhCCccccccccCCeecEEEEEEC---CCEEEEEEe
Confidence 8888754221112232 37899999988 9999999999 999997753
No 25
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.79 E-value=8.2e-19 Score=152.81 Aligned_cols=117 Identities=13% Similarity=0.124 Sum_probs=103.1
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCC-ChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|..+|+|++ +.+|+ .+++++++||+++|+||++| |++|..++|.|+++++++. +++|++||.| +
T Consensus 20 ~G~~~P~f~l~~~~g~-~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-----------~~~vv~vs~D-~ 86 (167)
T PRK00522 20 VGDKAPDFTLVANDLS-DVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-----------NTVVLCISAD-L 86 (167)
T ss_pred CCCCCCCeEEEcCCCc-EEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-----------CcEEEEEeCC-C
Confidence 6889999999 99999 99999999999999999999 9999999999999988873 5899999998 4
Q ss_pred HHHHHHHHhcCCCcccccCCc-hhHHHHHhCCCCccc---------eEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIP---------CLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d-~~~~~~~~~~v~~~P---------~~~lid~~G~i~~~~~ 302 (399)
....+++.++.+...+++..| ....+++.||+...| +++|||++|+|++.+.
T Consensus 87 ~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 87 PFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred HHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 466788888877444788888 566999999998877 9999999999998864
No 26
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.79 E-value=1.1e-18 Score=153.89 Aligned_cols=159 Identities=14% Similarity=0.218 Sum_probs=118.8
Q ss_pred hhhcCCCCccc----CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 172 LLTNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 172 ~~g~~~p~f~l----~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
.+|..+|+|+. +.+.. .+++++++||+++|+|| +.||+.|..+++.|.+++++|.+. +++|++||
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~-~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~---------g~~vigIS 72 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFI-EVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL---------GVDVYSVS 72 (187)
T ss_pred ccCCcCCCcEEEEEeCCcce-EEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC---------CCEEEEEe
Confidence 47899999987 23444 67888999999999999 999999999999999999999876 89999999
Q ss_pred cCCCHHHHHHHHhc---CCCcccccCCchhHHHHHhCCC----Ccc--ceEEEECCCCcEEecccchhhhhhcccCCCCC
Q 015833 247 TDRDQTSFESYFGT---MPWLALPFGDPTIKELTKYFDV----QGI--PCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 317 (399)
Q Consensus 247 ~d~~~~~~~~~~~~---~~~~~~p~~~d~~~~~~~~~~v----~~~--P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~ 317 (399)
+|. ....+++.+. ...+.||+..|.+..+++.||+ .++ |++||||++|+|++...... ..|
T Consensus 73 ~D~-~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~--~~~------- 142 (187)
T PRK10382 73 TDT-HFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAE--GIG------- 142 (187)
T ss_pred CCC-HHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCC--CCC-------
Confidence 984 4455555543 2347899999999999999998 356 99999999999998864332 111
Q ss_pred hHHHHHHHHHHHHHhccCCCcccccccccceeeeecCCCCC
Q 015833 318 EAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGG 358 (399)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (399)
+..+++.+.++.+ .....|....+|..|..|..
T Consensus 143 -~~~~eil~~l~al-------q~~~~~~g~~~p~~w~~~~~ 175 (187)
T PRK10382 143 -RDASDLLRKIKAA-------QYVASHPGEVCPAKWKEGEA 175 (187)
T ss_pred -CCHHHHHHHHHhh-------hhHhhcCCeEeCCCCCcCCc
Confidence 2345554444321 11223335678888876654
No 27
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.78 E-value=3.5e-19 Score=152.83 Aligned_cols=115 Identities=15% Similarity=0.215 Sum_probs=95.6
Q ss_pred CCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC------
Q 015833 177 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR------ 249 (399)
Q Consensus 177 ~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~------ 249 (399)
.|+|++ +.+|+ .+++++++||+|+|+|||+||+ |..++|.|++++++|+++ ++.|++|++|.
T Consensus 2 ~~~f~l~d~~G~-~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~---------~~~vv~v~~~~~~~~~~ 70 (152)
T cd00340 2 IYDFSVKDIDGE-PVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR---------GLVVLGFPCNQFGGQEP 70 (152)
T ss_pred cceeEEECCCCC-EEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC---------CEEEEEeccCccccCCC
Confidence 588999 99999 9999999999999999999999 999999999999999765 79999999752
Q ss_pred -CHHHHHHHHhc-CCCcccccCCch--hHH-HHHhCC--CCccc-----------eEEEECCCCcEEecccc
Q 015833 250 -DQTSFESYFGT-MPWLALPFGDPT--IKE-LTKYFD--VQGIP-----------CLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 250 -~~~~~~~~~~~-~~~~~~p~~~d~--~~~-~~~~~~--v~~~P-----------~~~lid~~G~i~~~~~~ 303 (399)
+.++.++++++ .+ ++||+..|. ... ..+.|+ +.++| ++||||++|+++.+..+
T Consensus 71 ~~~~~~~~f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G 141 (152)
T cd00340 71 GSNEEIKEFCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAP 141 (152)
T ss_pred CCHHHHHHHHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECC
Confidence 35778999986 55 688887652 222 455555 46666 79999999999998654
No 28
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.78 E-value=9.8e-19 Score=148.45 Aligned_cols=117 Identities=13% Similarity=0.120 Sum_probs=103.2
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCC-ChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|..+|+|++ +.+|+ .+++++++||+++|+||++| |++|+.++|.|.+++++++ ++.|++|++|.
T Consensus 2 ~G~~aP~f~l~~~~g~-~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-----------~~~vi~Is~d~- 68 (143)
T cd03014 2 VGDKAPDFTLVTSDLS-EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-----------NTVVLTISADL- 68 (143)
T ss_pred CCCCCCCcEEECCCCc-EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-----------CCEEEEEECCC-
Confidence 5788999999 99999 99999999999999999998 6999999999999998873 58999999985
Q ss_pred HHHHHHHHhcCCCcccccCCchh-HHHHHhCCCCc------cceEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPFGDPTI-KELTKYFDVQG------IPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~~-~~~~~~~~v~~------~P~~~lid~~G~i~~~~~ 302 (399)
.+..+++.++++...+|+..|.. ..+++.||+.. .|++||||++|+|+....
T Consensus 69 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 69 PFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVEL 127 (143)
T ss_pred HHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEE
Confidence 56678888877766788888875 89999999863 799999999999998864
No 29
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.78 E-value=1.4e-18 Score=149.38 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=105.6
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecC-CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|..+|+|++ +.+|+ .+++++++||++||+||++ ||+.|..+++.|.+++++++++ ++++|+|+.| +
T Consensus 6 ~g~~~p~f~l~~~~G~-~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~---------~v~vi~Is~d-~ 74 (154)
T PRK09437 6 AGDIAPKFSLPDQDGE-QVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA---------GVVVLGISTD-K 74 (154)
T ss_pred CCCcCCCcEeeCCCCC-EEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCC-C
Confidence 5888999999 99999 9999999999999999986 7889999999999999999866 7999999998 5
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhCCCCcc------------ceEEEECCCCcEEeccc
Q 015833 251 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGI------------PCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~------------P~~~lid~~G~i~~~~~ 302 (399)
.+++++++++++ +++|+..|....+++.||+... |+++|||++|+|+....
T Consensus 75 ~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 75 PEKLSRFAEKEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD 137 (154)
T ss_pred HHHHHHHHHHhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc
Confidence 688889998876 6888888888999999998654 67899999999998853
No 30
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.78 E-value=3.6e-18 Score=151.76 Aligned_cols=130 Identities=22% Similarity=0.259 Sum_probs=103.7
Q ss_pred hhhcCCCCccc-CCCCCceeecc--ccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVS--SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~--~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.+|..+|+|++ +.+|+ .++++ +++||+++|+||++||++|+.++|.+.++++++ ++.+++|+.|
T Consensus 47 ~vG~~aP~f~l~d~~G~-~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~------------~~~vv~Is~~ 113 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGE-PVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE------------ETDVVMISDG 113 (189)
T ss_pred CCCCcCCCcEecCCCCC-EEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc------------CCcEEEEeCC
Confidence 47889999999 99999 99994 579999999999999999999999999887543 4678999855
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHH
Q 015833 249 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQM 328 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~ 328 (399)
+.++.++++++++ +.++... ...++.+.|++..+|++++||++|+++++... .+.+.++++.+++
T Consensus 114 -~~~~~~~~~~~~~-~~~~~~~-~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~~------------~~~~~le~ll~~l 178 (189)
T TIGR02661 114 -TPAEHRRFLKDHE-LGGERYV-VSAEIGMAFQVGKIPYGVLLDQDGKIRAKGLT------------NTREHLESLLEAD 178 (189)
T ss_pred -CHHHHHHHHHhcC-CCcceee-chhHHHHhccCCccceEEEECCCCeEEEccCC------------CCHHHHHHHHHHH
Confidence 6778889998876 3333222 35789999999999999999999999987321 2455666666555
Q ss_pred H
Q 015833 329 E 329 (399)
Q Consensus 329 ~ 329 (399)
+
T Consensus 179 ~ 179 (189)
T TIGR02661 179 R 179 (189)
T ss_pred H
Confidence 3
No 31
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.78 E-value=1.6e-18 Score=153.80 Aligned_cols=160 Identities=19% Similarity=0.240 Sum_probs=117.3
Q ss_pred hhhcCCCCccc-C-CCCCc-eeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 172 LLTNHDRGYLL-G-HPPDE-KVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 172 ~~g~~~p~f~l-~-~~g~~-~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
.+|..+|+|++ + .+|+. .+++++++||+++|+|| ++||++|..+++.|.+++++|.+. +++|++||+
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~---------gv~vi~VS~ 73 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL---------GVEVYSVST 73 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc---------CCcEEEEeC
Confidence 57899999999 6 46641 47788999999999999 999999999999999999999866 899999999
Q ss_pred CCCHHHHHHHHh---cCCCcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEecccchhhhhhcccCCCCCh
Q 015833 248 DRDQTSFESYFG---TMPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE 318 (399)
Q Consensus 248 d~~~~~~~~~~~---~~~~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~ 318 (399)
|.. ...+++.+ ....+.||+..|.+..+++.||+. ..|++||||++|+|+....... + ..
T Consensus 74 D~~-~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~---------~-~~ 142 (187)
T TIGR03137 74 DTH-FVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDN---------G-IG 142 (187)
T ss_pred CCH-HHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCC---------C-CC
Confidence 953 33333333 223467889999999999999986 4699999999999998753211 1 11
Q ss_pred HHHHHHHHHHHHHhccCCCcccccccccceeeeecCCCCC
Q 015833 319 AKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGG 358 (399)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (399)
+..+++.+.|+.+ .....+....+|..|..|..
T Consensus 143 ~~~~~ll~~l~~~-------~~~~~~~~~~~~~~~~~~~~ 175 (187)
T TIGR03137 143 RDASELLRKIKAA-------QYVAAHPGEVCPAKWKEGAE 175 (187)
T ss_pred CCHHHHHHHHHHh-------hhHHhcCCeeeCCCCCcCCc
Confidence 2456666655431 11122224567777766654
No 32
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.77 E-value=2.4e-18 Score=150.90 Aligned_cols=119 Identities=17% Similarity=0.236 Sum_probs=98.8
Q ss_pred HhhhcCCCCccc-CCCCC-ceeecccc-CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 171 NLLTNHDRGYLL-GHPPD-EKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~~g~-~~~~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
..+|.++|+|++ +.+|+ ..++++++ +||+++|+||++||++|+.++|.++++++ + ++++++|+.
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~---------~~~vi~V~~ 100 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----D---------GLPIVGVDY 100 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----c---------CCEEEEEEC
Confidence 357899999999 88876 14554565 68999999999999999999999887653 2 589999999
Q ss_pred CCCHHHHHHHHhcCCCcccc-cCCchhHHHHHhCCCCccceEEEECCCCcEEecccc
Q 015833 248 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 248 d~~~~~~~~~~~~~~~~~~p-~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
+.+.++.++++++++ +.+| +..|....+.+.|++.++|++++||++|+++++..+
T Consensus 101 ~~~~~~~~~~~~~~~-~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G 156 (173)
T TIGR00385 101 KDQSQNALKFLKELG-NPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAG 156 (173)
T ss_pred CCChHHHHHHHHHcC-CCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEec
Confidence 877778888888876 4565 456778899999999999999999999999988544
No 33
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.77 E-value=1.3e-18 Score=143.61 Aligned_cols=116 Identities=25% Similarity=0.455 Sum_probs=99.6
Q ss_pred cccccCCeEEecCCCCEEeccccCCCEEEEEEecC-CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhH
Q 015833 8 VQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR 86 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~ 86 (399)
+|..+|+|++++.+|+.++|++++||+++|.||++ ||++|+..++.|+++++++++.+ +.+++|+.|.. ++.+++.
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~-~~~~~~~ 77 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDP-EEIKQFL 77 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSH-HHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeecccccc-cchhhhh
Confidence 58899999999999999999999999999999999 99999999999999999999876 99999999655 4677777
Q ss_pred hcCCCcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeee
Q 015833 87 ACMPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 87 ~~~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~ 131 (399)
+..++....+.|.. ..+.+.|++. .+|+.+|||+ +|+|++
T Consensus 78 ~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~~~p~~~lid~---~g~I~~ 123 (124)
T PF00578_consen 78 EEYGLPFPVLSDPD--GELAKAFGIEDEKDTLALPAVFLIDP---DGKIRY 123 (124)
T ss_dssp HHHTCSSEEEEETT--SHHHHHTTCEETTTSEESEEEEEEET---TSBEEE
T ss_pred hhhccccccccCcc--hHHHHHcCCccccCCceEeEEEEECC---CCEEEe
Confidence 75543222222432 7899999998 9999999999 999986
No 34
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.77 E-value=4e-18 Score=134.16 Aligned_cols=93 Identities=39% Similarity=0.755 Sum_probs=82.4
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcC--CCcccccCChHHHHHHHhhc
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM--PWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~--~~~~~~~~d~~~~~~l~~~~ 109 (399)
||+++|+||++||++|+.++|.|.++++++++ +.++++|+|+.|++.+.++++.++. +|..+++.+.. ...+.+.|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 78 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDN-NSELLKKY 78 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHH-HHHHHHHT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcch-HHHHHHHC
Confidence 79999999999999999999999999999995 4469999999999999999999988 79999985544 58999999
Q ss_pred CCCCcCeEEEEcCCCCCCCe
Q 015833 110 DIEGIPCLVVLQPYDDKDDA 129 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i 129 (399)
+|.++|+++|+|+ +|+|
T Consensus 79 ~i~~iP~~~lld~---~G~I 95 (95)
T PF13905_consen 79 GINGIPTLVLLDP---DGKI 95 (95)
T ss_dssp T-TSSSEEEEEET---TSBE
T ss_pred CCCcCCEEEEECC---CCCC
Confidence 9999999999999 9976
No 35
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.77 E-value=3.4e-18 Score=146.06 Aligned_cols=119 Identities=19% Similarity=0.229 Sum_probs=104.6
Q ss_pred hhcCCCCccc-CCCCCceeeccccCC-cEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVG-KTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~g-k~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
+|..+|+|.+ +.+|+ .+++++++| |+++|.|| ++||+.|...+|.|++++++++++ ++.+++|+.|
T Consensus 3 ~G~~~p~~~l~~~~g~-~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~v~vi~vs~d- 71 (149)
T cd03018 3 VGDKAPDFELPDQNGQ-EVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA---------GAEVLGISVD- 71 (149)
T ss_pred CCCcCCCcEecCCCCC-EEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC---------CCEEEEecCC-
Confidence 5788999999 99999 999999999 99999888 899999999999999999999865 7999999998
Q ss_pred CHHHHHHHHhcCCCcccccCCchh--HHHHHhCCCCc----c--ceEEEECCCCcEEecccc
Q 015833 250 DQTSFESYFGTMPWLALPFGDPTI--KELTKYFDVQG----I--PCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~~p~~~d~~--~~~~~~~~v~~----~--P~~~lid~~G~i~~~~~~ 303 (399)
+.+..+++.++++ +.+|+..|.. ..+++.|++.. + |+++|||++|++++++.+
T Consensus 72 ~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~ 132 (149)
T cd03018 72 SPFSLRAWAEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVS 132 (149)
T ss_pred CHHHHHHHHHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEec
Confidence 4567888888876 6889988876 89999999873 3 389999999999988543
No 36
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.77 E-value=3.1e-18 Score=144.67 Aligned_cols=116 Identities=26% Similarity=0.332 Sum_probs=105.0
Q ss_pred CCCCccc-CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHH
Q 015833 176 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 253 (399)
Q Consensus 176 ~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~ 253 (399)
.+|+|.+ +.+|+ .+++++++||+++|+|| +.||+.|..+++.|.++++++.++ +++|++|++| +.++
T Consensus 2 ~~p~f~l~~~~g~-~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~---------~~~vv~is~d-~~~~ 70 (140)
T cd03017 2 KAPDFTLPDQDGE-TVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL---------GAVVIGVSPD-SVES 70 (140)
T ss_pred CCCCccccCCCCC-EEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCC-CHHH
Confidence 5799999 99999 99999999999999999 579999999999999999999865 7999999998 5678
Q ss_pred HHHHHhcCCCcccccCCchhHHHHHhCCCCcc---------ceEEEECCCCcEEecccc
Q 015833 254 FESYFGTMPWLALPFGDPTIKELTKYFDVQGI---------PCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 254 ~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~---------P~~~lid~~G~i~~~~~~ 303 (399)
++++.++++ +.+|+..|.+..+++.||+... |+++|||++|+|+....+
T Consensus 71 ~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g 128 (140)
T cd03017 71 HAKFAEKYG-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRK 128 (140)
T ss_pred HHHHHHHhC-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEec
Confidence 889998877 6789999988999999999988 999999999999988543
No 37
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5.7e-18 Score=142.64 Aligned_cols=118 Identities=19% Similarity=0.259 Sum_probs=107.8
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEec-CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
.+|.++|||++ +.+|+ .++|++++||+|+|+||. .++|.|..++-.++..+.+|.+. +.+|++||.|
T Consensus 5 ~~G~~aPdF~Lp~~~g~-~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~---------~a~V~GIS~D- 73 (157)
T COG1225 5 KVGDKAPDFELPDQDGE-TVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL---------GAVVLGISPD- 73 (157)
T ss_pred CCCCcCCCeEeecCCCC-EEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC---------CCEEEEEeCC-
Confidence 36899999999 99999 999999999999999995 59999999999999999999876 8999999999
Q ss_pred CHHHHHHHHhcCCCcccccCCchhHHHHHhCCCC------------ccceEEEECCCCcEEecc
Q 015833 250 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~ 301 (399)
+....++|.++++ ++||+++|.+.++++.||+- ..+++||||++|+|+...
T Consensus 74 s~~~~~~F~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 74 SPKSHKKFAEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CHHHHHHHHHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 6678888988888 78999999999999999983 457899999999999875
No 38
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.76 E-value=1.9e-18 Score=143.69 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=96.6
Q ss_pred ccCCeEEecCCC--CEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhc
Q 015833 11 LRRRMTSTKEIG--EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 88 (399)
Q Consensus 11 ~~p~f~l~d~~G--~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~ 88 (399)
.+|+|++++.+| +.+++++++||+++|+||++||++|+.++|.|+++.+.+ ++++++|+.+.+.+.++++.++
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~~~~~~~~~~~~~ 76 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECCCCHHHHHHHHHh
Confidence 589999999999 889999999999999999999999999999999987764 2999999999899999999987
Q ss_pred CCCccccc-CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 89 MPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 89 ~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
.+....+. .|. ...+++.|++.++|+++++|+ +|+++...
T Consensus 77 ~~~~~~~~~~D~--~~~~~~~~~v~~~P~~~~ld~---~G~v~~~~ 117 (127)
T cd03010 77 HGNPYAAVGFDP--DGRVGIDLGVYGVPETFLIDG---DGIIRYKH 117 (127)
T ss_pred cCCCCceEEECC--cchHHHhcCCCCCCeEEEECC---CceEEEEE
Confidence 66422211 133 378999999999999999999 99988663
No 39
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.76 E-value=3.6e-18 Score=150.99 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=94.2
Q ss_pred hcCCCCccc-CCCCCceeeccccCCcEE-EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--
Q 015833 174 TNHDRGYLL-GHPPDEKVPVSSLVGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 249 (399)
Q Consensus 174 g~~~p~f~l-~~~g~~~~~l~~~~gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-- 249 (399)
+...|+|++ +.+|+ .+++++++||+| ++.|||+||++|+.++|.|++++++|+++ ++.|++|++|.
T Consensus 17 ~~~~p~f~l~d~~G~-~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~---------gv~vv~vs~~~~~ 86 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQ-LVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ---------GLEILAFPCNQFM 86 (183)
T ss_pred CCcccceEeEcCCCC-EEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC---------CcEEEEEeccccc
Confidence 456899999 99999 999999999964 56679999999999999999999999876 89999999752
Q ss_pred -----CHHHHHHHHh-cCCCcccccCCc--hh----HHHH------------HhCCCCccce---EEEECCCCcEEeccc
Q 015833 250 -----DQTSFESYFG-TMPWLALPFGDP--TI----KELT------------KYFDVQGIPC---LVIIGPEGKTVTKQG 302 (399)
Q Consensus 250 -----~~~~~~~~~~-~~~~~~~p~~~d--~~----~~~~------------~~~~v~~~P~---~~lid~~G~i~~~~~ 302 (399)
+.+++++++. +++ ++||+..| .+ ..+. ..+++.++|+ +||||++|+|+.+..
T Consensus 87 ~~~~~~~~~~~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~ 165 (183)
T PTZ00256 87 EQEPWDEPEIKEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS 165 (183)
T ss_pred ccCCCCHHHHHHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence 3467888876 444 67888754 22 1222 1246789995 699999999999864
Q ss_pred c
Q 015833 303 R 303 (399)
Q Consensus 303 ~ 303 (399)
+
T Consensus 166 g 166 (183)
T PTZ00256 166 P 166 (183)
T ss_pred C
Confidence 3
No 40
>PTZ00102 disulphide isomerase; Provisional
Probab=99.76 E-value=2.9e-17 Score=166.76 Aligned_cols=72 Identities=21% Similarity=0.348 Sum_probs=58.5
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.|+.|+|+|||+||++|+.+.|.++++++.+++. ..+.++.|+++.+ ..
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~--------~~v~~~~id~~~~-----------------------~~ 422 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN--------DSIIVAKMNGTAN-----------------------ET 422 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC--------CcEEEEEEECCCC-----------------------cc
Confidence 4789999999999999999999999999888643 2466666665543 45
Q ss_pred HHHhCCCCccceEEEECCCCcEE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
.++.|+++++||++++++++++.
T Consensus 423 ~~~~~~v~~~Pt~~~~~~~~~~~ 445 (477)
T PTZ00102 423 PLEEFSWSAFPTILFVKAGERTP 445 (477)
T ss_pred chhcCCCcccCeEEEEECCCcce
Confidence 67889999999999998777653
No 41
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.75 E-value=2.8e-18 Score=147.26 Aligned_cols=117 Identities=13% Similarity=0.144 Sum_probs=89.9
Q ss_pred cCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChHHHHH
Q 015833 12 RRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLNAFNN 84 (399)
Q Consensus 12 ~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~-------~~~~~~~ 84 (399)
+|+|+++|.+|++++|++++||+|+|+|||+||+ |+.++|.|+++++++++.| +++++|+.|. +.+.+.+
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccCccccCCCCCHHHHHH
Confidence 6999999999999999999999999999999999 9999999999999998776 9999999753 3567888
Q ss_pred hHhc-CCCcccccCChHHHH-HHHhhcC--CCCcC-----------eEEEEcCCCCCCCeeeccc
Q 015833 85 YRAC-MPWLAVPYSDLETKK-ALNRKFD--IEGIP-----------CLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 85 ~~~~-~~~~~~~~~d~~~~~-~l~~~~~--v~~~P-----------~~~lid~~~~~G~i~~~~~ 134 (399)
++++ .+..+..+.|.+... ...+.|+ +..+| +.+|||+ +|+++....
T Consensus 79 f~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~---~G~i~~~~~ 140 (152)
T cd00340 79 FCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDR---DGEVVKRFA 140 (152)
T ss_pred HHHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECC---CCcEEEEEC
Confidence 8875 553222222211111 1233344 34455 8999999 999997643
No 42
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.75 E-value=5.6e-17 Score=147.18 Aligned_cols=177 Identities=15% Similarity=0.147 Sum_probs=109.3
Q ss_pred cCCCEEEEEEec---CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 30 LEGKVTALYFSA---NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 30 ~~gk~vlv~F~a---~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
+++...++.|++ +||++|+.+.|.+.++++.+. + +.+..+++|.+ ...+++
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~--~~i~~v~vd~~----------------------~~~~l~ 70 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--K--LKLEIYDFDTP----------------------EDKEEA 70 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--C--ceEEEEecCCc----------------------ccHHHH
Confidence 454455566777 999999999999999999873 2 55555555422 128899
Q ss_pred hhcCCCCcCeEEEEcCCCCCCCeee-ccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCCcccCCC
Q 015833 107 RKFDIEGIPCLVVLQPYDDKDDATL-HDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHP 185 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~~~~~G~i~~-~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~~ 185 (399)
++|+|.++||+++++ +|+.+. +. .| .+...+....+...... .+ +.-.++..
T Consensus 71 ~~~~V~~~Pt~~~f~----~g~~~~~~~-------~G---~~~~~~l~~~i~~~~~~----------~~---~~~~L~~~ 123 (215)
T TIGR02187 71 EKYGVERVPTTIILE----EGKDGGIRY-------TG---IPAGYEFAALIEDIVRV----------SQ---GEPGLSEK 123 (215)
T ss_pred HHcCCCccCEEEEEe----CCeeeEEEE-------ee---cCCHHHHHHHHHHHHHh----------cC---CCCCCCHH
Confidence 999999999999998 565542 21 01 11111111111111000 00 00011111
Q ss_pred CCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcc
Q 015833 186 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA 265 (399)
Q Consensus 186 g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~ 265 (399)
. .-.+..+.+.++++.||++||++|+...+.++++..+. +++.+..|..|..
T Consensus 124 ~--~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-----------~~i~~~~vD~~~~--------------- 175 (215)
T TIGR02187 124 T--VELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-----------DKILGEMIEANEN--------------- 175 (215)
T ss_pred H--HHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-----------CceEEEEEeCCCC---------------
Confidence 0 01122334455677799999999999888777766553 2456666665544
Q ss_pred cccCCchhHHHHHhCCCCccceEEEECCCCc
Q 015833 266 LPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 296 (399)
Q Consensus 266 ~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~ 296 (399)
.++++.|+|.++||+++. .+|+
T Consensus 176 --------~~~~~~~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 176 --------PDLAEKYGVMSVPKIVIN-KGVE 197 (215)
T ss_pred --------HHHHHHhCCccCCEEEEe-cCCE
Confidence 778999999999999887 5675
No 43
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.75 E-value=6.6e-18 Score=151.49 Aligned_cols=119 Identities=18% Similarity=0.159 Sum_probs=99.1
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEE-EEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGL-YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 250 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll-~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 250 (399)
+|..+|+|++ +..| .+++++++||+++| +||++||++|..+++.|.+++++|+++ +++|++||+|..
T Consensus 4 vG~~aP~F~~~~~~g--~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~---------~~~vi~vS~D~~ 72 (202)
T PRK13190 4 LGQKAPDFTVNTTKG--PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL---------GVELVGLSVDSI 72 (202)
T ss_pred CCCCCCCcEEecCCC--cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEeCCCH
Confidence 6889999999 6555 68999999997766 688999999999999999999999876 899999999954
Q ss_pred H--HHHHH-HHhcCC-CcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEeccc
Q 015833 251 Q--TSFES-YFGTMP-WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 251 ~--~~~~~-~~~~~~-~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 302 (399)
. .+|.+ +.++.+ .+.||+..|.+..+++.||+. .+|++||||++|+|+....
T Consensus 73 ~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~ 134 (202)
T PRK13190 73 YSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIY 134 (202)
T ss_pred HHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEE
Confidence 2 23433 333444 368999999999999999984 5899999999999997753
No 44
>PRK15000 peroxidase; Provisional
Probab=99.75 E-value=1.2e-17 Score=149.40 Aligned_cols=159 Identities=15% Similarity=0.212 Sum_probs=116.2
Q ss_pred hhhcCCCCccc-CC--CCCce---eecccc-CCcEEEEEEecC-CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEE
Q 015833 172 LLTNHDRGYLL-GH--PPDEK---VPVSSL-VGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 243 (399)
Q Consensus 172 ~~g~~~p~f~l-~~--~g~~~---~~l~~~-~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv 243 (399)
++|..+|+|++ +. +|+ . ++++++ +||+++|+||+. ||+.|..+++.|.+++++|+++ +++|+
T Consensus 3 ~vg~~aPdF~~~~~~~~g~-~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~---------g~~vi 72 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGE-IVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR---------GVEVV 72 (200)
T ss_pred cCCCcCCCCEeecccCCCc-eeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEE
Confidence 47899999999 54 344 4 345554 799999999985 9999999999999999999876 89999
Q ss_pred EEecCCCH--HHHHHH-HhcCC--CcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEecccchhhhhhccc
Q 015833 244 FVSTDRDQ--TSFESY-FGTMP--WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQEN 312 (399)
Q Consensus 244 ~is~d~~~--~~~~~~-~~~~~--~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~ 312 (399)
+||+|... ..|.+. .+..+ -+.||+..|.+..+++.||+. ++|++||||++|+|+....+++ ..|
T Consensus 73 gvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~--~~g-- 148 (200)
T PRK15000 73 GVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDL--PLG-- 148 (200)
T ss_pred EEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCC--CCC--
Confidence 99999532 344442 23333 268999999999999999997 7999999999999998754433 111
Q ss_pred CCCCChHHHHHHHHHHHHHhccCCCcccccccccceeeeecCCCCC
Q 015833 313 AYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGG 358 (399)
Q Consensus 313 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (399)
+.++++.+.++.+ .....| ...+|+.|..|..
T Consensus 149 ------r~~~eilr~l~al-------~~~~~~-~~~~p~~w~~g~~ 180 (200)
T PRK15000 149 ------RNIDEMLRMVDAL-------QFHEEH-GDVCPAQWEKGKE 180 (200)
T ss_pred ------CCHHHHHHHHHHh-------hhHHhc-CCCcCCCCCCCCc
Confidence 2345555544421 112222 4678888877655
No 45
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.75 E-value=2.7e-17 Score=146.98 Aligned_cols=122 Identities=10% Similarity=0.020 Sum_probs=93.5
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CCh
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDL 79 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-------~~~ 79 (399)
..+..+|+|+++|.+|+.+++++++||+|+|+|||+||++|+.++|.|+++++++++.| ++|++|+.| .+.
T Consensus 14 ~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred hcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhccCCCCCCH
Confidence 34678999999999999999999999999999999999999999999999999999877 999999974 356
Q ss_pred HHHHHhHhcCCCcccccCCh--H--HH--------HHHHhhcCCC-------CcCeEEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYRACMPWLAVPYSDL--E--TK--------KALNRKFDIE-------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~d~--~--~~--------~~l~~~~~v~-------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+.++.++.+..+..+.+. + .. ..+...|++. ..|+.+|||+ +|+++.+.
T Consensus 92 e~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~---~G~iv~~~ 161 (199)
T PTZ00056 92 KDIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNK---SGNVVAYF 161 (199)
T ss_pred HHHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECC---CCcEEEEe
Confidence 78888888765322111110 0 00 1122334332 2347999999 99999664
No 46
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.74 E-value=1.2e-17 Score=151.84 Aligned_cols=121 Identities=13% Similarity=0.121 Sum_probs=93.5
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CCh
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDL 79 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-------~~~ 79 (399)
.++..+|+|+++|.+|+.+++++++||+++|+||++||++|..++|.|+++++++++.| ++|++|+.| .+.
T Consensus 74 ~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~s~ 151 (236)
T PLN02399 74 ATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSN 151 (236)
T ss_pred hcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCCCH
Confidence 46789999999999999999999999999999999999999999999999999999877 999999975 345
Q ss_pred HHHHHhH-hcCCCcccccC--ChHHHHHHHhh-------cC------CCCcCeEEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYR-ACMPWLAVPYS--DLETKKALNRK-------FD------IEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~--d~~~~~~l~~~-------~~------v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
++..+++ ++++.....+. |... ...... ++ +.+.|+.+|||+ +|+++...
T Consensus 152 ~ei~~f~~~~~g~~fPvl~~~D~~G-~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk---~GkVv~~~ 217 (236)
T PLN02399 152 PEIKQFACTRFKAEFPIFDKVDVNG-PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDK---NGKVVERY 217 (236)
T ss_pred HHHHHHHHHhcCCCCccccccCCCc-chhhHHHHHHHHhcCCccCCccccCceEEEECC---CCcEEEEE
Confidence 6777876 44442111121 2111 122222 22 456899999999 99999764
No 47
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.74 E-value=2.2e-17 Score=144.62 Aligned_cols=120 Identities=18% Similarity=0.293 Sum_probs=104.7
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHh
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY 85 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~ 85 (399)
...|..+|+|++.+.+|+.+++++++||+++|+||++||++|+.+.+.|.++++++++.+ +.+++|+.|.+.+.+.++
T Consensus 35 ~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~~~~~~~ 112 (173)
T PRK03147 35 VQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKNF 112 (173)
T ss_pred cCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999998765 999999999999999999
Q ss_pred HhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 86 RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 86 ~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.++++.....+.|. ..++.+.|++.++|+++++++ +|+++..
T Consensus 113 ~~~~~~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~---~g~i~~~ 154 (173)
T PRK03147 113 VNRYGLTFPVAIDK--GRQVIDAYGVGPLPTTFLIDK---DGKVVKV 154 (173)
T ss_pred HHHhCCCceEEECC--cchHHHHcCCCCcCeEEEECC---CCcEEEE
Confidence 99776422111132 378899999999999999999 9999855
No 48
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.74 E-value=1.2e-17 Score=143.54 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=92.2
Q ss_pred CCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-------C
Q 015833 178 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-------R 249 (399)
Q Consensus 178 p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-------~ 249 (399)
-+|++ +.+|+ .+++++++||++||+||++||++|..++|.|.+++++|+++ ++.|++|+++ .
T Consensus 3 ~~f~l~~~~G~-~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~---------~~~v~~i~~~~~~~~~~d 72 (153)
T TIGR02540 3 YSFEVKDARGR-TVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPS---------HFNVLAFPCNQFGESEPD 72 (153)
T ss_pred ccceeECCCCC-EecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC---------CeEEEEEeccccccCCCC
Confidence 47888 99999 99999999999999999999999999999999999999876 8999999952 3
Q ss_pred CHHHHHHHHhc-CCCcccccCCc-----hhHHHHHhCC---CCccce----EEEECCCCcEEecccc
Q 015833 250 DQTSFESYFGT-MPWLALPFGDP-----TIKELTKYFD---VQGIPC----LVIIGPEGKTVTKQGR 303 (399)
Q Consensus 250 ~~~~~~~~~~~-~~~~~~p~~~d-----~~~~~~~~~~---v~~~P~----~~lid~~G~i~~~~~~ 303 (399)
+.+..++++++ ++ +.||+..| ........|. ..++|+ +||||++|+++.+..+
T Consensus 73 ~~~~~~~f~~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g 138 (153)
T TIGR02540 73 SSKEIESFARRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRP 138 (153)
T ss_pred CHHHHHHHHHHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECC
Confidence 46778888875 45 67888654 1112222232 236898 9999999999988644
No 49
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.74 E-value=1.8e-17 Score=152.53 Aligned_cols=161 Identities=13% Similarity=0.107 Sum_probs=118.0
Q ss_pred hhhcCCCCccc-C-CCCCc-eeecccc-CCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 172 LLTNHDRGYLL-G-HPPDE-KVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 172 ~~g~~~p~f~l-~-~~g~~-~~~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
++|..+|+|++ + .+|+. .++++++ +||+++|+|| +.||++|..+++.|.+++++|+++ +++|++||
T Consensus 69 ~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~---------gv~VigIS 139 (261)
T PTZ00137 69 LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER---------GVKVLGVS 139 (261)
T ss_pred cCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEE
Confidence 68999999998 5 34431 6899998 8888888888 899999999999999999999876 89999999
Q ss_pred cCCC--HHHHHHH-HhcC--CCcccccCCchhHHHHHhCCCC-----ccceEEEECCCCcEEecccchhhhhhcccCCCC
Q 015833 247 TDRD--QTSFESY-FGTM--PWLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF 316 (399)
Q Consensus 247 ~d~~--~~~~~~~-~~~~--~~~~~p~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~ 316 (399)
+|.. ..+|.+. .++. ..+.||+..|.+..+++.||+. ..|++||||++|+|++....++ ..
T Consensus 140 ~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~--~~------- 210 (261)
T PTZ00137 140 VDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDL--GL------- 210 (261)
T ss_pred CCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCC--CC-------
Confidence 9962 2344432 2222 3478999999999999999985 5899999999999998864332 11
Q ss_pred ChHHHHHHHHHHHHHhccCCCcccccccccceeeeecCCCCCC
Q 015833 317 TEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGP 359 (399)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (399)
.+.++++...|+.+ ..... .+..+|+.|-.|..+
T Consensus 211 -gr~v~eiLr~l~al-------q~~~~-~g~~cPanW~~g~~~ 244 (261)
T PTZ00137 211 -GRSVDETLRLFDAV-------QFAEK-TGNVCPVNWKQGDQA 244 (261)
T ss_pred -CCCHHHHHHHHHHh-------chhhh-cCCCcCCCCCcCCce
Confidence 12345555554421 01111 256788888776553
No 50
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.73 E-value=2e-17 Score=133.66 Aligned_cols=112 Identities=29% Similarity=0.512 Sum_probs=101.8
Q ss_pred Cccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC-HHHHHH
Q 015833 179 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD-QTSFES 256 (399)
Q Consensus 179 ~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~-~~~~~~ 256 (399)
+|.+ +.+|+ .+++++++||+++|+||++||++|+..++.+.++.+++.+. ++.+++|++|.+ .+.+++
T Consensus 1 ~~~~~~~~g~-~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~~~v~~d~~~~~~~~~ 70 (116)
T cd02966 1 DFSLPDLDGK-PVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD---------GVEVVGVNVDDDDPAAVKA 70 (116)
T ss_pred CccccCCCCC-EeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC---------CeEEEEEECCCCCHHHHHH
Confidence 4667 88999 99999999999999999999999999999999999998643 799999999986 899999
Q ss_pred HHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 257 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 257 ~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.++ ..+++..|....+.+.|++.++|+++|+|++|+++.+.
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 71 FLKKYG-ITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARH 114 (116)
T ss_pred HHHHcC-CCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEEe
Confidence 999888 78888888888999999999999999999999998763
No 51
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.73 E-value=2.2e-17 Score=146.66 Aligned_cols=115 Identities=17% Similarity=0.208 Sum_probs=96.2
Q ss_pred cccccccCCeEEecCCCCEEecc--ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVS--DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~--~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
..+|..+|+|+++|.+|+.++++ .++||+++|+||++|||+|+.++|.+++++++. + +.+++|+. .+.++..
T Consensus 46 ~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~--~~vv~Is~-~~~~~~~ 119 (189)
T TIGR02661 46 PDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---E--TDVVMISD-GTPAEHR 119 (189)
T ss_pred CCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---C--CcEEEEeC-CCHHHHH
Confidence 46788999999999999999995 579999999999999999999999999987653 2 66788884 4677888
Q ss_pred HhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 84 NYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 84 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
++.++++....++. . ..++.+.|++..+|+.+++|+ +|++++.
T Consensus 120 ~~~~~~~~~~~~~~-~--~~~i~~~y~v~~~P~~~lID~---~G~I~~~ 162 (189)
T TIGR02661 120 RFLKDHELGGERYV-V--SAEIGMAFQVGKIPYGVLLDQ---DGKIRAK 162 (189)
T ss_pred HHHHhcCCCcceee-c--hhHHHHhccCCccceEEEECC---CCeEEEc
Confidence 99998775333332 1 278889999999999999999 9999865
No 52
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.73 E-value=8.4e-18 Score=148.97 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=95.3
Q ss_pred ccccccCCeEEecCCC--CEEecccc-CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 7 YVQQLRRRMTSTKEIG--EEVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G--~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
.+|..+|+|+++|.+| +.++++++ +||+++|+||++||++|+.++|.|.++++ .+ ++|++|+.|.+.+...
T Consensus 40 ~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~--~~vi~v~~~~~~~~~~ 113 (185)
T PRK15412 40 LIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKAI 113 (185)
T ss_pred hcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cC--CEEEEEECCCCHHHHH
Confidence 4577899999999984 77777776 79999999999999999999999988754 33 8999999988888888
Q ss_pred HhHhcCCCcccc-cCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccc
Q 015833 84 NYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 84 ~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~ 134 (399)
++.++++....+ ..|.. ..+.+.|++.++|++++||+ +|++++...
T Consensus 114 ~~~~~~~~~~~~~~~D~~--~~~~~~~gv~~~P~t~vid~---~G~i~~~~~ 160 (185)
T PRK15412 114 SWLKELGNPYALSLFDGD--GMLGLDLGVYGAPETFLIDG---NGIIRYRHA 160 (185)
T ss_pred HHHHHcCCCCceEEEcCC--ccHHHhcCCCcCCeEEEECC---CceEEEEEe
Confidence 898876632211 22432 67888999999999999999 999987643
No 53
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=9.1e-17 Score=158.37 Aligned_cols=244 Identities=19% Similarity=0.275 Sum_probs=150.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|.||++||++|..+.|.+.++...+++. +.+..| |+..+..+++.|+
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~---~~~~~v------------------------d~~~~~~~~~~y~ 98 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK---VKIGAV------------------------DCDEHKDLCEKYG 98 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc---eEEEEe------------------------CchhhHHHHHhcC
Confidence 5679999999999999999999999999998763 666666 5555699999999
Q ss_pred CCCcCeEEEEcCCCCCCCeeeccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCC--cccC-CCCC
Q 015833 111 IEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRG--YLLG-HPPD 187 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~--f~l~-~~g~ 187 (399)
|.++|++.++.+ ...++.... +...+.+..... ..+...+....+. +.++ .+-.
T Consensus 99 i~gfPtl~~f~~---~~~~~~~~~------------~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~l~~~~~~ 155 (383)
T KOG0191|consen 99 IQGFPTLKVFRP---GKKPIDYSG------------PRNAESLAEFLI--------KELEPSVKKLVEGEVFELTKDNFD 155 (383)
T ss_pred CccCcEEEEEcC---CCceeeccC------------cccHHHHHHHHH--------HhhccccccccCCceEEccccchh
Confidence 999999999997 423332211 111111111111 0011111111111 1111 1111
Q ss_pred ceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccc
Q 015833 188 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALP 267 (399)
Q Consensus 188 ~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p 267 (399)
.+ -......+++.||+|||++|+.++|.+.++...+... ..+.+..+..+ .
T Consensus 156 -~~--~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~--------~~v~~~~~d~~--~---------------- 206 (383)
T KOG0191|consen 156 -ET--VKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSK--------ENVELGKIDAT--V---------------- 206 (383)
T ss_pred -hh--hhccCcceEEEEeccccHHhhhcChHHHHHHHHhccC--------cceEEEeeccc--h----------------
Confidence 00 0012356899999999999999999999999988642 36777777665 2
Q ss_pred cCCchhHHHHHhCCCCccceEEEECCCCc-EEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhcc--CCCccccccc
Q 015833 268 FGDPTIKELTKYFDVQGIPCLVIIGPEGK-TVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN--LPRSEFHIGH 344 (399)
Q Consensus 268 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~-i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~ 344 (399)
...++..++|.++|+++++-++.. +.... ..+..+.+..-+.+.... .+........
T Consensus 207 -----~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~---------------~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~ 266 (383)
T KOG0191|consen 207 -----HKSLASRLEVRGYPTLKLFPPGEEDIYYYS---------------GLRDSDSIVSFVEKKERRNIPEPELKEIED 266 (383)
T ss_pred -----HHHHhhhhcccCCceEEEecCCCccccccc---------------ccccHHHHHHHHHhhcCCCCCCcccccccC
Confidence 378899999999999999955555 23322 233345555555554433 1111111111
Q ss_pred c-----ccee----------eeecCCCCCCeecCCCCCCCCcee
Q 015833 345 R-----HELN----------LVSEGTGGGPFICCDCDEQGSGWA 373 (399)
Q Consensus 345 ~-----~~~~----------~~~~~~~~~~~~c~~C~~~~~~w~ 373 (399)
+ +-+. ...+.....++||.+|....+.|.
T Consensus 267 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (383)
T KOG0191|consen 267 KDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGHCGGFAPVYE 310 (383)
T ss_pred ccccccchhhhhhhhhhhHHhhhhHhhhhcchhhcccccchhHH
Confidence 1 1111 011455666899999998887764
No 54
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.73 E-value=3.7e-17 Score=146.53 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=117.3
Q ss_pred hhhcCCCCccc-----CCCCCceeeccccCCcEEEEEEec-CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 015833 172 LLTNHDRGYLL-----GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 245 (399)
Q Consensus 172 ~~g~~~p~f~l-----~~~g~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~i 245 (399)
.+|..+|+|++ +.+|+ ++++++++||+++|+||+ .||++|..+++.|.+++++|+++ +++|++|
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~-~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~---------g~~vv~I 76 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFK-KISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL---------NCEVLAC 76 (199)
T ss_pred ccCCcCCCCEeeccccCCCCc-EEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc---------CCEEEEE
Confidence 47899999995 35667 899999999999999995 68999999999999999999876 8999999
Q ss_pred ecCCCHHH--HHHHHhc---CCCcccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEecccchhhhhhcccCC
Q 015833 246 STDRDQTS--FESYFGT---MPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAY 314 (399)
Q Consensus 246 s~d~~~~~--~~~~~~~---~~~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~ 314 (399)
|+|..... |...... .+-++||+..|.+.++++.||+. .+|+.||||++|+|+......+
T Consensus 77 S~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~--------- 147 (199)
T PTZ00253 77 SMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDM--------- 147 (199)
T ss_pred eCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCC---------
Confidence 99965332 2111111 22378999999999999999985 4799999999999998743322
Q ss_pred CCChHHHHHHHHHHHHHhccCCCcccccccccceeeeecCCCCCC
Q 015833 315 PFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGP 359 (399)
Q Consensus 315 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (399)
+ ..+.++++.+.|+.+-... .....|++.|..|..+
T Consensus 148 ~-~~r~~~e~l~~l~a~~~~~--------~~~~~cp~~w~~g~~~ 183 (199)
T PTZ00253 148 P-VGRNVEEVLRLLEAFQFVE--------KHGEVCPANWKKGDPT 183 (199)
T ss_pred C-CCCCHHHHHHHHHhhhhHH--------hcCCEeCCCCCcCCcc
Confidence 1 2234455555554321100 1246788888766553
No 55
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.73 E-value=2.2e-17 Score=149.01 Aligned_cols=120 Identities=12% Similarity=0.114 Sum_probs=103.8
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEE-EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
.+|..+|+|++ +.+|+ ...+++++||++ |+.||+.|||+|..+++.|.+++++|+++ +++|++||+|.
T Consensus 3 ~~Gd~aPdF~l~t~~G~-~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~---------gv~vigIS~D~ 72 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGV-KRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL---------NTELIGLSVDQ 72 (215)
T ss_pred CCCCCCCCCEeECCCCc-EecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEeCCC
Confidence 57999999999 88998 888899999975 67888999999999999999999999876 89999999996
Q ss_pred C--HHHHHHHHhcC--CCcccccCCchhHHHHHhCCCC-------ccceEEEECCCCcEEecc
Q 015833 250 D--QTSFESYFGTM--PWLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 250 ~--~~~~~~~~~~~--~~~~~p~~~d~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~ 301 (399)
. ..+|.++++++ .-+.||+..|.+..+++.||+. ..|++||||++|+|+...
T Consensus 73 ~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~ 135 (215)
T PRK13599 73 VFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIM 135 (215)
T ss_pred HHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEE
Confidence 3 44577777643 2378999999999999999983 689999999999999874
No 56
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.73 E-value=2.5e-17 Score=164.72 Aligned_cols=118 Identities=16% Similarity=0.241 Sum_probs=99.6
Q ss_pred cccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-----CChHHH
Q 015833 8 VQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----EDLNAF 82 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-----~~~~~~ 82 (399)
.+..+|+|++.|.+|+.++++ +||+|||+|||+||++|+.++|.|++++++++..+ ++||.|+.+ .+.+.+
T Consensus 34 ~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~~ 109 (521)
T PRK14018 34 VPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGDF 109 (521)
T ss_pred ccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHHH
Confidence 345799999999999999998 99999999999999999999999999999997655 999999863 345677
Q ss_pred HHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 83 NNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 83 ~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
.++++.+++..+|+ +.+....+.+.|+|.++|+++||++ +|+++...
T Consensus 110 ~~~~~~~~y~~~pV-~~D~~~~lak~fgV~giPTt~IIDk---dGkIV~~~ 156 (521)
T PRK14018 110 QKWYAGLDYPKLPV-LTDNGGTLAQSLNISVYPSWAIIGK---DGDVQRIV 156 (521)
T ss_pred HHHHHhCCCcccce-eccccHHHHHHcCCCCcCeEEEEcC---CCeEEEEE
Confidence 78887777654444 3333488999999999999999999 99998663
No 57
>PLN02412 probable glutathione peroxidase
Probab=99.72 E-value=1.4e-17 Score=144.92 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=90.2
Q ss_pred ccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChHH
Q 015833 9 QQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLNA 81 (399)
Q Consensus 9 ~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~-------~~~~ 81 (399)
.+.+|+|+++|.+|+.++|++++||+++|+||++||++|+.++|.|+++++++++.| ++|++|+.|. +.+.
T Consensus 6 ~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~~~~~~~~ 83 (167)
T PLN02412 6 PKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQEPGSNEE 83 (167)
T ss_pred CCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccCCCCCHHH
Confidence 467999999999999999999999999999999999999999999999999999887 9999999852 3345
Q ss_pred HHHh-HhcCCCcccccCC--hHHHHHHHhhc-------------CCCCcCeEEEEcCCCCCCCeeecc
Q 015833 82 FNNY-RACMPWLAVPYSD--LETKKALNRKF-------------DIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 82 ~~~~-~~~~~~~~~~~~d--~~~~~~l~~~~-------------~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
..++ .++++..+..+.+ ... ......| ++.+.|+.+|||+ +|+++...
T Consensus 84 ~~~~~~~~~~~~fpvl~~~d~~g-~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~---~G~vv~~~ 147 (167)
T PLN02412 84 IQQTVCTRFKAEFPIFDKVDVNG-KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSK---EGKVVQRY 147 (167)
T ss_pred HHHHHHHccCCCCceEeEEeeCC-CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECC---CCcEEEEE
Confidence 4444 4554421111111 110 1122222 2677899999999 99999774
No 58
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.72 E-value=4.3e-17 Score=142.71 Aligned_cols=119 Identities=13% Similarity=0.203 Sum_probs=102.4
Q ss_pred ccccCCeEEecCCCCEEecccc-CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChH
Q 015833 9 QQLRRRMTSTKEIGEEVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLN 80 (399)
Q Consensus 9 ~~~~p~f~l~d~~G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~-------~~~ 80 (399)
|..+|+|++.+.+|+.++++++ +||++||+||++|||.|..+++.|+++++++++.+ +.+++|++|. +.+
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~~~~~~~d~~~ 78 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSNDIEAYPEDSPE 78 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCccccccccCHH
Confidence 4679999999999999999998 99999999999999999999999999999998765 9999999975 578
Q ss_pred HHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeeccc
Q 015833 81 AFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 81 ~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~~ 134 (399)
.++++.+++++...-+.|.. ..+.+.|++..+|+++|||+ +|++++...
T Consensus 79 ~~~~~~~~~~~~~~~l~D~~--~~~~~~~~v~~~P~~~lid~---~G~v~~~~~ 127 (171)
T cd02969 79 NMKAKAKEHGYPFPYLLDET--QEVAKAYGAACTPDFFLFDP---DGKLVYRGR 127 (171)
T ss_pred HHHHHHHHCCCCceEEECCc--hHHHHHcCCCcCCcEEEECC---CCeEEEeec
Confidence 88998887664322222433 68899999999999999999 999987643
No 59
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.72 E-value=3e-17 Score=136.27 Aligned_cols=105 Identities=20% Similarity=0.219 Sum_probs=89.5
Q ss_pred CCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-----CChHHHHHhHhcCCCccccc
Q 015833 22 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----EDLNAFNNYRACMPWLAVPY 96 (399)
Q Consensus 22 G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-----~~~~~~~~~~~~~~~~~~~~ 96 (399)
|+++++++++||+++|+||++||++|+.++|.|+++++++++.+ +++++|+.+ .+.+.++++++++++....+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 57899999999999999999999999999999999999999765 999999863 56788888888877533223
Q ss_pred CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 97 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 97 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
.|. ...+.+.|++.++|++++||+ +|+++...
T Consensus 91 ~D~--~~~~~~~~~v~~~P~~~vid~---~G~v~~~~ 122 (126)
T cd03012 91 NDN--DYATWRAYGNQYWPALYLIDP---TGNVRHVH 122 (126)
T ss_pred ECC--chHHHHHhCCCcCCeEEEECC---CCcEEEEE
Confidence 343 378899999999999999999 99998764
No 60
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.72 E-value=5.2e-17 Score=137.06 Aligned_cols=116 Identities=22% Similarity=0.250 Sum_probs=103.7
Q ss_pred CCCccc-CCCCCceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHH
Q 015833 177 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 254 (399)
Q Consensus 177 ~p~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~ 254 (399)
+|+|++ +.+|+ .+++++++||+++|+|| +.||+.|...++.|.+++++++.. ++.+++|+.| +.+..
T Consensus 2 ~p~f~l~~~~g~-~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~~~~i~is~d-~~~~~ 70 (140)
T cd02971 2 APDFTLPATDGG-EVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG---------GAEVLGVSVD-SPFSH 70 (140)
T ss_pred CCCceeccCCCc-EEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEeCC-CHHHH
Confidence 689999 99999 99999999999999999 689999999999999999999654 7999999998 56778
Q ss_pred HHHHhcCCCcccccCCchhHHHHHhCCCCccc---------eEEEECCCCcEEecccc
Q 015833 255 ESYFGTMPWLALPFGDPTIKELTKYFDVQGIP---------CLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 255 ~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P---------~~~lid~~G~i~~~~~~ 303 (399)
+++.++++-..+++..|....+++.||+...| +++|||++|+|++++.+
T Consensus 71 ~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~ 128 (140)
T cd02971 71 KAWAEKEGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVE 128 (140)
T ss_pred HHHHhcccCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEec
Confidence 88888884478899999888999999988665 89999999999998644
No 61
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.71 E-value=6.7e-17 Score=145.20 Aligned_cols=119 Identities=13% Similarity=0.166 Sum_probs=95.9
Q ss_pred hhcCCCCccc-CCCCCceeeccccCC-cEE-EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVG-KTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~g-k~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
+|..+|+|++ +.+| .+++++++| |++ |++||++|||.|..+++.|.+++++|+++ +++|++||+|.
T Consensus 1 vG~~aP~F~~~~~~g--~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~---------gv~vigvS~D~ 69 (203)
T cd03016 1 LGDTAPNFEADTTHG--PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKR---------NVKLIGLSVDS 69 (203)
T ss_pred CcCCCCCeEEecCCC--cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc---------CCEEEEEECCC
Confidence 4788999999 7665 589999998 655 55788999999999999999999999876 89999999995
Q ss_pred C--HHHHHHHHhcC--CCcccccCCchhHHHHHhCCCC----c----cceEEEECCCCcEEeccc
Q 015833 250 D--QTSFESYFGTM--PWLALPFGDPTIKELTKYFDVQ----G----IPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 250 ~--~~~~~~~~~~~--~~~~~p~~~d~~~~~~~~~~v~----~----~P~~~lid~~G~i~~~~~ 302 (399)
. ..+|.+.++.. .-+.||+..|.+..+++.||+. + .|++||||++|+|+....
T Consensus 70 ~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~ 134 (203)
T cd03016 70 VESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILY 134 (203)
T ss_pred HHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEe
Confidence 3 22333333221 2478999999999999999985 2 457999999999998753
No 62
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.71 E-value=5.6e-17 Score=139.46 Aligned_cols=122 Identities=17% Similarity=0.250 Sum_probs=100.5
Q ss_pred cccccccccCCeEEecCCCCEEeccccCCCEEEEEEecC-CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 015833 4 SQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82 (399)
Q Consensus 4 ~~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~ 82 (399)
.....|..+|+|+++|.+|+.+++++++||+++|+||++ ||+.|+.+++.|+++++++++.+ +++|+|+.|. .+++
T Consensus 2 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d~-~~~~ 78 (154)
T PRK09437 2 NPLKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTDK-PEKL 78 (154)
T ss_pred CcCCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHH
Confidence 455679999999999999999999999999999999976 68899999999999999999876 9999999984 5788
Q ss_pred HHhHhcCCCcccccCChHHHHHHHhhcCCCCc------------CeEEEEcCCCCCCCeeecc
Q 015833 83 NNYRACMPWLAVPYSDLETKKALNRKFDIEGI------------PCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 83 ~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~------------P~~~lid~~~~~G~i~~~~ 133 (399)
.++.++++....-+.|. ...+.+.|++... |+.+|||+ +|+|+...
T Consensus 79 ~~~~~~~~~~~~~l~D~--~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~---~G~i~~~~ 136 (154)
T PRK09437 79 SRFAEKELLNFTLLSDE--DHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDA---DGKIEHVF 136 (154)
T ss_pred HHHHHHhCCCCeEEECC--CchHHHHhCCCcccccccccccCcceEEEEECC---CCEEEEEE
Confidence 88888765321112233 2678899998653 67899999 99998663
No 63
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.71 E-value=1.8e-17 Score=145.39 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=94.5
Q ss_pred ccccccCCeEEecCCCC--EEecccc-CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 7 YVQQLRRRMTSTKEIGE--EVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~--~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
.+|..+|+|+++|.+|+ +++++++ +||+++|+||++||++|+.++|.++++++ .+ +++++|+.+...++..
T Consensus 35 ~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~--~~vi~V~~~~~~~~~~ 108 (173)
T TIGR00385 35 LIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DG--LPIVGVDYKDQSQNAL 108 (173)
T ss_pred hcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cC--CEEEEEECCCChHHHH
Confidence 56788999999999997 4555675 79999999999999999999999988764 23 8999999988778788
Q ss_pred HhHhcCCCccccc-CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 84 NYRACMPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
++.+++++.+.++ .|. ...+.+.|++.++|++++||+ +|++++..
T Consensus 109 ~~~~~~~~~f~~v~~D~--~~~~~~~~~v~~~P~~~~id~---~G~i~~~~ 154 (173)
T TIGR00385 109 KFLKELGNPYQAILIDP--NGKLGLDLGVYGAPETFLVDG---NGVILYRH 154 (173)
T ss_pred HHHHHcCCCCceEEECC--CCchHHhcCCeeCCeEEEEcC---CceEEEEE
Confidence 8888776432211 133 378899999999999999999 99998663
No 64
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.71 E-value=6.2e-17 Score=146.20 Aligned_cols=123 Identities=11% Similarity=0.112 Sum_probs=100.5
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEE-EEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGL-YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll-~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
.+|..+|+|++ +.+|+ ....++++||+++| +||++||+.|..+++.|.+++++|+++ +++|++||+|.
T Consensus 8 ~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~---------g~~VigvS~Ds 77 (215)
T PRK13191 8 LIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL---------NTELIGLSVDS 77 (215)
T ss_pred cCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEECCC
Confidence 47999999999 77886 44335589997665 778999999999999999999999876 89999999996
Q ss_pred CHH--HHHHHHhcC-C-CcccccCCchhHHHHHhCCCC-------ccceEEEECCCCcEEecccch
Q 015833 250 DQT--SFESYFGTM-P-WLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQGRN 304 (399)
Q Consensus 250 ~~~--~~~~~~~~~-~-~~~~p~~~d~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~~~ 304 (399)
... +|.+++++. + -+.||+..|.+..+++.||+. ..|++||||++|+|+....++
T Consensus 78 ~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~ 143 (215)
T PRK13191 78 NISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYP 143 (215)
T ss_pred HHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecC
Confidence 433 566666531 1 378999999999999999973 479999999999999875443
No 65
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.71 E-value=7.8e-17 Score=140.36 Aligned_cols=120 Identities=15% Similarity=0.150 Sum_probs=100.5
Q ss_pred cccccccCCeEEecCCCCEEeccccCCCEEEEEEecCC-CcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 015833 6 WYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 84 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~ 84 (399)
..+|..+|+|+++|.+|+.+++++++||+++|+||++| |++|+.++|.|+++++++. + ++|++||.|.. .+.++
T Consensus 18 ~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~--~~vv~vs~D~~-~~~~~ 92 (167)
T PRK00522 18 PQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--N--TVVLCISADLP-FAQKR 92 (167)
T ss_pred CCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--C--cEEEEEeCCCH-HHHHH
Confidence 35688999999999999999999999999999999999 9999999999999999982 3 99999999854 56688
Q ss_pred hHhcCCCcc-cccCChHHHHHHHhhcCCCCcC---------eEEEEcCCCCCCCeeeccc
Q 015833 85 YRACMPWLA-VPYSDLETKKALNRKFDIEGIP---------CLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 85 ~~~~~~~~~-~~~~d~~~~~~l~~~~~v~~~P---------~~~lid~~~~~G~i~~~~~ 134 (399)
+.++.+... ..++|.. ...+++.|++...| ++++||+ +|+|++...
T Consensus 93 f~~~~~~~~~~~lsD~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~---~G~I~~~~~ 148 (167)
T PRK00522 93 FCGAEGLENVITLSDFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDE---NNKVVYSEL 148 (167)
T ss_pred HHHhCCCCCceEeecCC-ccHHHHHhCCeecccccCCceeeEEEEECC---CCeEEEEEE
Confidence 888776432 2333422 25899999998777 9999999 999997754
No 66
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.70 E-value=8.3e-17 Score=136.57 Aligned_cols=118 Identities=17% Similarity=0.161 Sum_probs=96.9
Q ss_pred cccccCCeEEecCCCCEEeccccCCCEEEEEEecCC-CcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhH
Q 015833 8 VQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR 86 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~ 86 (399)
+|..+|+|++++.+|++++|++++||+++|+||++| |++|+.++|.|++++++++ + +.+++|+.|. .+..+++.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~--~~vi~Is~d~-~~~~~~~~ 76 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--N--TVVLTISADL-PFAQKRWC 76 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--C--CEEEEEECCC-HHHHHHHH
Confidence 588999999999999999999999999999999998 6999999999999999973 3 8999999986 45667777
Q ss_pred hcCCCcccc-cCChHHHHHHHhhcCCCC------cCeEEEEcCCCCCCCeeeccc
Q 015833 87 ACMPWLAVP-YSDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 87 ~~~~~~~~~-~~d~~~~~~l~~~~~v~~------~P~~~lid~~~~~G~i~~~~~ 134 (399)
++++...++ ++|.. ...+.+.|++.. .|+.+|||+ +|+|+....
T Consensus 77 ~~~~~~~~~~l~D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~---~G~I~~~~~ 127 (143)
T cd03014 77 GAEGVDNVTTLSDFR-DHSFGKAYGVLIKDLGLLARAVFVIDE---NGKVIYVEL 127 (143)
T ss_pred HhcCCCCceEeecCc-ccHHHHHhCCeeccCCccceEEEEEcC---CCeEEEEEE
Confidence 766642232 22321 268888999863 799999999 999987653
No 67
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.70 E-value=1.4e-16 Score=135.79 Aligned_cols=113 Identities=18% Similarity=0.352 Sum_probs=96.1
Q ss_pred CCCccc-CCCCCceeeccccC-CcEE-EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHH
Q 015833 177 DRGYLL-GHPPDEKVPVSSLV-GKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 253 (399)
Q Consensus 177 ~p~f~l-~~~g~~~~~l~~~~-gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~ 253 (399)
+|+|++ +.+|+ .++++++. ++++ |++||++||++|+.++|.|.++++++.+. ++.+|+|+.|.. +.
T Consensus 2 ~p~f~l~~~~g~-~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~---------~v~vv~V~~~~~-~~ 70 (149)
T cd02970 2 APDFELPDAGGE-TVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL---------GVELVAVGPESP-EK 70 (149)
T ss_pred CCCccccCCCCC-EEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc---------CeEEEEEeCCCH-HH
Confidence 689999 99999 99999875 4555 55556999999999999999999999865 899999999854 44
Q ss_pred HHHHHhcCCCcccccCCchhHHHHHhCCCC-----------------------------ccceEEEECCCCcEEecc
Q 015833 254 FESYFGTMPWLALPFGDPTIKELTKYFDVQ-----------------------------GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 254 ~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~-----------------------------~~P~~~lid~~G~i~~~~ 301 (399)
..++.+..+ +++|+..|.+..+.+.||+. .+|++||||++|+|++.+
T Consensus 71 ~~~~~~~~~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 71 LEAFDKGKF-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH 146 (149)
T ss_pred HHHHHHhcC-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence 556666655 78999999999999999984 799999999999999875
No 68
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.69 E-value=1.1e-16 Score=132.16 Aligned_cols=107 Identities=22% Similarity=0.377 Sum_probs=95.2
Q ss_pred CCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-CHHHHH
Q 015833 178 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-DQTSFE 255 (399)
Q Consensus 178 p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-~~~~~~ 255 (399)
|+|.+ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++ +.+++|++|. +.++++
T Consensus 1 p~f~l~~~~g~-~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~--------------~~~i~i~~~~~~~~~~~ 65 (123)
T cd03011 1 PLFTATTLDGE-QFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD--------------YPVVSVALRSGDDGAVA 65 (123)
T ss_pred CCceeecCCCC-EeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh--------------CCEEEEEccCCCHHHHH
Confidence 78889 89999 9999999999999999999999999999999988765 3478888875 478899
Q ss_pred HHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 256 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 256 ~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.++++ +.+|+..|.+..+++.|++.++|+++|+|++| ++.+.
T Consensus 66 ~~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~ 109 (123)
T cd03011 66 RFMQKKG-YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFVT 109 (123)
T ss_pred HHHHHcC-CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEEE
Confidence 9999887 68888888888999999999999999999999 77663
No 69
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.69 E-value=1.2e-16 Score=135.19 Aligned_cols=116 Identities=25% Similarity=0.374 Sum_probs=98.1
Q ss_pred CCCccc-CCCCCceeeccccCCcEEEEEEecCCChh-hhhhHHHHHHHHHHHHhhhhhcCCCC-CCEEEEEEecCC---C
Q 015833 177 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDAL-EDFEVVFVSTDR---D 250 (399)
Q Consensus 177 ~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~vv~is~d~---~ 250 (399)
+|+|++ +.+|+ .+++++++||+++|+||++||++ |..+++.|.++++++++. + .++++++|+.|. +
T Consensus 2 ~p~f~l~~~~g~-~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~-------~~~~v~~v~vs~d~~~d~ 73 (142)
T cd02968 2 GPDFTLTDQDGR-PVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGAD-------GGDDVQVVFISVDPERDT 73 (142)
T ss_pred CCceEEEcCCCC-EEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHh-------hcCceEEEEEEECCCCCC
Confidence 689999 99999 99999999999999999999997 999999999999999865 1 259999999974 4
Q ss_pred HHHHHHHHhcCCCcccccCCch---hHHHHHhCCCCcc--------------ceEEEECCCCcEEecc
Q 015833 251 QTSFESYFGTMPWLALPFGDPT---IKELTKYFDVQGI--------------PCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~p~~~d~---~~~~~~~~~v~~~--------------P~~~lid~~G~i~~~~ 301 (399)
.+.+++++++++ ..+++..+. ...+++.||+... |+++|||++|+|+.+.
T Consensus 74 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 74 PEVLKAYAKAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred HHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 577888988876 456666553 4789999997544 4699999999999763
No 70
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.69 E-value=2.4e-16 Score=133.38 Aligned_cols=118 Identities=25% Similarity=0.435 Sum_probs=98.3
Q ss_pred ccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcc-cHhhHHHHHHHHHHHhcCC-CcEEEEEEecCC---ChHHHHHh
Q 015833 11 LRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNNG-SDFEVVFVSSDE---DLNAFNNY 85 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~~~ii~Vs~D~---~~~~~~~~ 85 (399)
.+|+|+++|.+|+++++++++||+++|.||++||++ |.++++.|+++++++++.+ .++++++|+.|. +.+.++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~ 80 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHH
Confidence 379999999999999999999999999999999997 9999999999999998753 469999999985 35778888
Q ss_pred HhcC--CCcccccCChHHHHHHHhhcCCCC--------------cCeEEEEcCCCCCCCeeec
Q 015833 86 RACM--PWLAVPYSDLETKKALNRKFDIEG--------------IPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 86 ~~~~--~~~~~~~~d~~~~~~l~~~~~v~~--------------~P~~~lid~~~~~G~i~~~ 132 (399)
.+++ +|..+.. .......+.+.|++.. .|..+|||+ +|+|+..
T Consensus 81 ~~~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~---~G~i~~~ 139 (142)
T cd02968 81 AKAFGPGWIGLTG-TPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDP---DGKLVRY 139 (142)
T ss_pred HHHhCCCcEEEEC-CHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECC---CCCEEEe
Confidence 8876 4665554 2333478899998643 467999999 9999864
No 71
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.69 E-value=2e-16 Score=135.01 Aligned_cols=122 Identities=18% Similarity=0.175 Sum_probs=99.6
Q ss_pred ccccccCCeEEecCCCCEEeccccCC-CEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEG-KVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN 84 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~g-k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~ 84 (399)
.+|..+|+|++.+.+|+.+++++++| |+++|.|| ++||+.|+..+|.|+++++++++.+ +++++|+.|. .+..++
T Consensus 2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d~-~~~~~~ 78 (149)
T cd03018 2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVDS-PFSLRA 78 (149)
T ss_pred CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCCC-HHHHHH
Confidence 46889999999999999999999999 99888888 9999999999999999999998765 9999999875 456788
Q ss_pred hHhcCCCcccccCChHHHHHHHhhcCCCC------cCeEEEEcCCCCCCCeeeccc
Q 015833 85 YRACMPWLAVPYSDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 85 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~~------~P~~~lid~~~~~G~i~~~~~ 134 (399)
+.++++....-++|......+.+.|++.. .|++++||+ +|++++...
T Consensus 79 ~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~---~G~v~~~~~ 131 (149)
T cd03018 79 WAEENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDR---DGIIRYAWV 131 (149)
T ss_pred HHHhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECC---CCEEEEEEe
Confidence 88876532222334322267888999873 348999999 999987743
No 72
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.69 E-value=1.4e-16 Score=134.56 Aligned_cols=115 Identities=24% Similarity=0.309 Sum_probs=98.1
Q ss_pred ccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcC
Q 015833 11 LRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM 89 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~ 89 (399)
.+|+|+++|.+|+.+++++++||+++|+|| ++||+.|+.+++.|+++++++.+.+ +++++|+.|. .+.+.++.+.+
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~-~~~~~~~~~~~ 78 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDS-VESHAKFAEKY 78 (140)
T ss_pred CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHHHHh
Confidence 589999999999999999999999999999 5899999999999999999998765 9999999985 47788888876
Q ss_pred CCcccccCChHHHHHHHhhcCCCCc---------CeEEEEcCCCCCCCeeecc
Q 015833 90 PWLAVPYSDLETKKALNRKFDIEGI---------PCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 90 ~~~~~~~~d~~~~~~l~~~~~v~~~---------P~~~lid~~~~~G~i~~~~ 133 (399)
+.....+.|.+ ..+.+.|++... |+.++||+ +|++++..
T Consensus 79 ~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~---~G~v~~~~ 126 (140)
T cd03017 79 GLPFPLLSDPD--GKLAKAYGVWGEKKKKYMGIERSTFLIDP---DGKIVKVW 126 (140)
T ss_pred CCCceEEECCc--cHHHHHhCCccccccccCCcceeEEEECC---CCEEEEEE
Confidence 54222233443 688999999988 99999999 99998764
No 73
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.69 E-value=1.7e-16 Score=138.39 Aligned_cols=135 Identities=8% Similarity=0.012 Sum_probs=101.5
Q ss_pred hhhcCCCCccc-CC-----C-----CCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCE
Q 015833 172 LLTNHDRGYLL-GH-----P-----PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDF 240 (399)
Q Consensus 172 ~~g~~~p~f~l-~~-----~-----g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 240 (399)
.+|.+.|...+ +. + .+ .++.++++||+++|+|||+||++|+.+.|.+.++.+ + ++
T Consensus 24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~-~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~----~---------~~ 89 (184)
T TIGR01626 24 QVEQSVPSVGVSEYGEIVLSGKDTVYQ-PWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA----A---------KF 89 (184)
T ss_pred hcCCcCCceEecCCceEEEcCCcccce-eccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH----c---------CC
Confidence 35777777765 22 2 23 567788999999999999999999999999999832 2 57
Q ss_pred EE------EEEecCCCHHHHHHH----HhcCCCcccc---cCCchhHHHHHhCCCCccceE-EEECCCCcEEecccchhh
Q 015833 241 EV------VFVSTDRDQTSFESY----FGTMPWLALP---FGDPTIKELTKYFDVQGIPCL-VIIGPEGKTVTKQGRNLI 306 (399)
Q Consensus 241 ~v------v~is~d~~~~~~~~~----~~~~~~~~~p---~~~d~~~~~~~~~~v~~~P~~-~lid~~G~i~~~~~~~~~ 306 (399)
.+ ++|+.|........| +++.. ..+| +..|....+...|++.++|++ ||||++|+|+.+..|
T Consensus 90 ~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~-~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G--- 165 (184)
T TIGR01626 90 PPVKYQTTTIINADDAIVGTGMFVKSSAKKGK-KENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEG--- 165 (184)
T ss_pred CcccccceEEEECccchhhHHHHHHHHHHHhc-ccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeC---
Confidence 77 999999765444444 44333 3444 777778889999999999988 899999999998654
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHHh
Q 015833 307 NLYQENAYPFTEAKLEFLEKQMEEEA 332 (399)
Q Consensus 307 ~~~g~~~~p~~~~~~~~l~~~~~~~~ 332 (399)
+.+++.++.+...+++++
T Consensus 166 --------~l~~ee~e~~~~li~~ll 183 (184)
T TIGR01626 166 --------ALSDSDIQTVISLVNGLL 183 (184)
T ss_pred --------CCCHHHHHHHHHHHHHHh
Confidence 346666666766666654
No 74
>PRK13189 peroxiredoxin; Provisional
Probab=99.68 E-value=2.1e-16 Score=143.51 Aligned_cols=120 Identities=13% Similarity=0.185 Sum_probs=97.0
Q ss_pred hhhcCCCCccc-CCCCCceeeccc-cCCcEEE-EEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSS-LVGKTVG-LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~-~~gk~vl-l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
.+|..+|+|++ +.+|. +++++ ++||+++ ++||++||+.|..+++.|.+++++|+++ +++|++||+|
T Consensus 10 ~vG~~aPdF~~~~~~g~--~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~---------~v~VigvS~D 78 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP--IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL---------NTELIGLSID 78 (222)
T ss_pred cCCCcCCCcEeEcCCCC--EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc---------CCEEEEEECC
Confidence 47999999999 77775 67766 5999655 5677999999999999999999999876 8999999999
Q ss_pred CCH--HHHHHHHhc-CC-CcccccCCchhHHHHHhCCCC-------ccceEEEECCCCcEEeccc
Q 015833 249 RDQ--TSFESYFGT-MP-WLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 249 ~~~--~~~~~~~~~-~~-~~~~p~~~d~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~ 302 (399)
... .+|.+.+.+ .+ -+.||+..|.+..+++.||+. ..|++||||++|+|+....
T Consensus 79 ~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~ 143 (222)
T PRK13189 79 QVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILY 143 (222)
T ss_pred CHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEe
Confidence 643 234443332 22 368999999999999999975 5799999999999987753
No 75
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.4e-16 Score=131.95 Aligned_cols=120 Identities=21% Similarity=0.258 Sum_probs=105.7
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
.+.+|..||+|+|++.+|++++|++++||+|+|+|| ..++|.|..++-.+++.+.+|.+.| .+|++||.|.. .+.+
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~Ds~-~~~~ 79 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPDSP-KSHK 79 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCCCH-HHHH
Confidence 456899999999999999999999999999999999 8999999999999999999999886 99999999854 7788
Q ss_pred HhHhcCCCcccccCChHHHHHHHhhcCCC------------CcCeEEEEcCCCCCCCeeec
Q 015833 84 NYRACMPWLAVPYSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 84 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v~------------~~P~~~lid~~~~~G~i~~~ 132 (399)
+|.++++..+...+|.+ .++++.||+- ..++++|||+ +|+|.+.
T Consensus 80 ~F~~k~~L~f~LLSD~~--~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~---dG~I~~~ 135 (157)
T COG1225 80 KFAEKHGLTFPLLSDED--GEVAEAYGVWGEKKMYGKEYMGIERSTFVIDP---DGKIRYV 135 (157)
T ss_pred HHHHHhCCCceeeECCc--HHHHHHhCcccccccCccccccccceEEEECC---CCeEEEE
Confidence 99998886555555665 7899999983 4689999999 9999865
No 76
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.67 E-value=2.9e-16 Score=171.51 Aligned_cols=119 Identities=22% Similarity=0.298 Sum_probs=104.6
Q ss_pred hhcCCCCccc-C--CCCCceeec-cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec-
Q 015833 173 LTNHDRGYLL-G--HPPDEKVPV-SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST- 247 (399)
Q Consensus 173 ~g~~~p~f~l-~--~~g~~~~~l-~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~- 247 (399)
.|..+|+|.. + .+|+ .+++ ++++||+|||+|||+||++|+.++|.|++++++|+++ ++.|++|+.
T Consensus 393 ~g~~~p~f~~~~~~~~g~-~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~---------~~~vvgV~~~ 462 (1057)
T PLN02919 393 TATKVPEFPPKLDWLNTA-PLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ---------PFTVVGVHSA 462 (1057)
T ss_pred cCCcCCCCcccccccCCc-cccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC---------CeEEEEEecc
Confidence 4788999987 3 6888 8988 6899999999999999999999999999999999865 799999974
Q ss_pred --C--CCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 248 --D--RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 248 --d--~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
| .+.+++++++.+.+ +.+|+..|....+.+.|+|.++|+++|||++|+++.+..
T Consensus 463 ~~D~~~~~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~ 520 (1057)
T PLN02919 463 KFDNEKDLEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLS 520 (1057)
T ss_pred cccccccHHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEe
Confidence 3 25678888988777 678888888889999999999999999999999998843
No 77
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.67 E-value=4.9e-16 Score=125.41 Aligned_cols=112 Identities=24% Similarity=0.377 Sum_probs=97.5
Q ss_pred CeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC-hHHHHHhHhcCCCc
Q 015833 14 RMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED-LNAFNNYRACMPWL 92 (399)
Q Consensus 14 ~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~-~~~~~~~~~~~~~~ 92 (399)
+|.+.+.+|+++++++++||+++|+||++||++|+..++.|.++.+++++. ++.++.|+.|.. .+.++++.+++++.
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~~~~~~~ 78 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD--GVEVVGVNVDDDDPAAVKAFLKKYGIT 78 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC--CeEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 578899999999999999999999999999999999999999999999744 499999999987 89999999987743
Q ss_pred ccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 93 AVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 93 ~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
...+.+. ...+.+.|++.++|+++++|+ +|+++..
T Consensus 79 ~~~~~~~--~~~~~~~~~~~~~P~~~l~d~---~g~v~~~ 113 (116)
T cd02966 79 FPVLLDP--DGELAKAYGVRGLPTTFLIDR---DGRIRAR 113 (116)
T ss_pred cceEEcC--cchHHHhcCcCccceEEEECC---CCcEEEE
Confidence 3333233 378999999999999999999 9988864
No 78
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.67 E-value=2.6e-16 Score=139.16 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=89.6
Q ss_pred ccccCCeEEecCCCCEEeccccCCCEE-EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChH
Q 015833 9 QQLRRRMTSTKEIGEEVKVSDLEGKVT-ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLN 80 (399)
Q Consensus 9 ~~~~p~f~l~d~~G~~v~l~~~~gk~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~-------~~~ 80 (399)
+..+|+|+++|.+|++++|++++||++ ++.|||+|||+|+.++|.|+++++++++.| ++|++|+.|. +.+
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEecccccccCCCCHH
Confidence 457899999999999999999999965 566799999999999999999999998876 9999999752 346
Q ss_pred HHHHhHh-cCCCcccccCC--hH--HHHHHH------------hhcCCCCcCe---EEEEcCCCCCCCeeecc
Q 015833 81 AFNNYRA-CMPWLAVPYSD--LE--TKKALN------------RKFDIEGIPC---LVVLQPYDDKDDATLHD 133 (399)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~d--~~--~~~~l~------------~~~~v~~~P~---~~lid~~~~~G~i~~~~ 133 (399)
...++.. ++++.+..+.| .. ....+. ..+++.++|+ .+|||+ +|+|+...
T Consensus 95 ~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~---~G~Iv~~~ 164 (183)
T PTZ00256 95 EIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDG---QGKVVKYF 164 (183)
T ss_pred HHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECC---CCCEEEEE
Confidence 6777764 44432221212 11 101121 1246778995 699999 99999764
No 79
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.67 E-value=4.4e-16 Score=136.57 Aligned_cols=117 Identities=21% Similarity=0.331 Sum_probs=94.6
Q ss_pred cccccCCeEEecCCC----CEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 015833 8 VQQLRRRMTSTKEIG----EEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G----~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~ 82 (399)
+|..+|+|++++.+| +.++|++++||+++|+|| ++||++|..+++.|+++++++.+.+ +.+++||.|... ..
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~-~~ 77 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHF-SH 77 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHH-HH
Confidence 478899999999887 789999999999999999 8999999999999999999998876 999999998643 22
Q ss_pred HHhHhc---------CCCcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeeccc
Q 015833 83 NNYRAC---------MPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 83 ~~~~~~---------~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~~ 134 (399)
.++.+. .+|..+ .|. ...+.+.|++. .+|+.+|||+ +|+|++...
T Consensus 78 ~~~~~~~~~~~~~~~~~f~~l--~D~--~~~~~~~~gv~~~~~~~~~p~~~lID~---~G~I~~~~~ 137 (173)
T cd03015 78 LAWRNTPRKEGGLGKINFPLL--ADP--KKKISRDYGVLDEEEGVALRGTFIIDP---EGIIRHITV 137 (173)
T ss_pred HHHHHhhhhhCCccCcceeEE--ECC--chhHHHHhCCccccCCceeeEEEEECC---CCeEEEEEe
Confidence 233322 233222 233 37888999986 5789999999 999997753
No 80
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.66 E-value=3.3e-16 Score=134.52 Aligned_cols=116 Identities=13% Similarity=0.124 Sum_probs=87.6
Q ss_pred CCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChHHHHHh
Q 015833 13 RRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNAFNNY 85 (399)
Q Consensus 13 p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-------~~~~~~~~~ 85 (399)
-+|+++|.+|+++++++++||+++|+|||+|||+|+.++|.|+++++++++.| +++++|+.+ .+.+...++
T Consensus 3 ~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~~~~~~~~~d~~~~~~~f 80 (153)
T TIGR02540 3 YSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPCNQFGESEPDSSKEIESF 80 (153)
T ss_pred ccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEeccccccCCCCCHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999876 999999852 345778888
Q ss_pred Hhc-CCCcccccCCh---HHHHHHHhhcC---CCCcCe----EEEEcCCCCCCCeeecc
Q 015833 86 RAC-MPWLAVPYSDL---ETKKALNRKFD---IEGIPC----LVVLQPYDDKDDATLHD 133 (399)
Q Consensus 86 ~~~-~~~~~~~~~d~---~~~~~l~~~~~---v~~~P~----~~lid~~~~~G~i~~~~ 133 (399)
+++ ++..+..+.+. .........|. ...+|+ .+|||+ +|+++...
T Consensus 81 ~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~---~G~v~~~~ 136 (153)
T TIGR02540 81 ARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNP---EGQVVKFW 136 (153)
T ss_pred HHHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcC---CCcEEEEE
Confidence 864 55322222221 00011111222 235787 999999 99999764
No 81
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.65 E-value=6.6e-16 Score=137.01 Aligned_cols=117 Identities=24% Similarity=0.352 Sum_probs=93.8
Q ss_pred ccccccCCeEEec-CCCC--EEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 015833 7 YVQQLRRRMTSTK-EIGE--EVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82 (399)
Q Consensus 7 ~~~~~~p~f~l~d-~~G~--~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~ 82 (399)
.+|..+|+|++++ .+|+ .+++++++||+++|+|| ++||++|+.+++.|+++++++++.| ++|++||.|... ..
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~-~~ 79 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHF-VH 79 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHH-HH
Confidence 4688999999998 5776 68888999999999999 9999999999999999999998776 999999998642 23
Q ss_pred HHhHh------cCCCcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 83 NNYRA------CMPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 83 ~~~~~------~~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+++.+ ++++. .++|. ...+++.|++. ..|++++||+ +|+|+...
T Consensus 80 ~~~~~~~~~~~~l~fp--llsD~--~~~~a~~~gv~~~~~g~~~p~tfiID~---~G~I~~~~ 135 (187)
T TIGR03137 80 KAWHDTSEAIGKITYP--MLGDP--TGVLTRNFGVLIEEAGLADRGTFVIDP---EGVIQAVE 135 (187)
T ss_pred HHHHhhhhhccCccee--EEECC--ccHHHHHhCCcccCCCceeeEEEEECC---CCEEEEEE
Confidence 33322 22221 12344 37899999986 4699999999 99998764
No 82
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.65 E-value=1.4e-15 Score=128.27 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=96.8
Q ss_pred ccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcC
Q 015833 11 LRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM 89 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~ 89 (399)
.+|+|++.|.+|+++++++++||+++|+|| ++||++|..++|.|+++++++++.+ +.+++|+.|. .+..+++.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d~-~~~~~~~~~~~ 77 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVDS-PFSHKAWAEKE 77 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HHHHHHHHhcc
Confidence 379999999999999999999999999999 7899999999999999999997665 9999999874 46677888866
Q ss_pred -CCcccccCChHHHHHHHhhcCCCCcC---------eEEEEcCCCCCCCeeeccch
Q 015833 90 -PWLAVPYSDLETKKALNRKFDIEGIP---------CLVVLQPYDDKDDATLHDGV 135 (399)
Q Consensus 90 -~~~~~~~~d~~~~~~l~~~~~v~~~P---------~~~lid~~~~~G~i~~~~~~ 135 (399)
+.....+.|.. ..+.+.|++...| +.++||+ +|++++....
T Consensus 78 ~~~~~~~l~D~~--~~~~~~~g~~~~~~~~~~~~~p~~~lid~---~g~i~~~~~~ 128 (140)
T cd02971 78 GGLNFPLLSDPD--GEFAKAYGVLIEKSAGGGLAARATFIIDP---DGKIRYVEVE 128 (140)
T ss_pred cCCCceEEECCC--hHHHHHcCCccccccccCceeEEEEEECC---CCcEEEEEec
Confidence 43222223443 6888999988665 8999999 9999977543
No 83
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.65 E-value=1.2e-15 Score=132.38 Aligned_cols=96 Identities=19% Similarity=0.274 Sum_probs=80.7
Q ss_pred cCCCCcccCCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHH
Q 015833 175 NHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 254 (399)
Q Consensus 175 ~~~p~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~ 254 (399)
.+.++|.+ .+|+ .+++++++ +|+||++||++|++++|.|++++++| +++|++|++|...+
T Consensus 53 ~~~~~f~l-~dG~-~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~------------g~~Vi~Vs~D~~~~-- 112 (181)
T PRK13728 53 PAPRWFRL-SNGR-QVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY------------GFSVFPYTLDGQGD-- 112 (181)
T ss_pred CCCCccCC-CCCC-EeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc------------CCEEEEEEeCCCCC--
Confidence 35677886 4888 99999988 77899999999999999999999886 47899999985532
Q ss_pred HHHHhcCCCcccccCCc-hhHHHHHhCCC--CccceEEEECCCCcEEe
Q 015833 255 ESYFGTMPWLALPFGDP-TIKELTKYFDV--QGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 255 ~~~~~~~~~~~~p~~~d-~~~~~~~~~~v--~~~P~~~lid~~G~i~~ 299 (399)
..||+..| ....+.+.|++ .++|++||||++|+++.
T Consensus 113 ---------~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 ---------TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred ---------CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 57888774 56678889995 69999999999999864
No 84
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.65 E-value=7.4e-16 Score=127.12 Aligned_cols=106 Identities=22% Similarity=0.405 Sum_probs=88.5
Q ss_pred CCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-ChHHHHHhHhcCCC
Q 015833 13 RRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-DLNAFNNYRACMPW 91 (399)
Q Consensus 13 p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~-~~~~~~~~~~~~~~ 91 (399)
|+|++++.+|+.+++++++||+++|+||++||++|+.++|.|++++++ +.+++|+.|. +.+.+.++.++++.
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~~ 73 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKGY 73 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcCC
Confidence 899999999999999999999999999999999999999999999876 4577888775 47888888887663
Q ss_pred ccccc-CChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 92 LAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 92 ~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.+++ .|. ..++.+.|++.++|+++++++ +| ++..
T Consensus 74 -~~~~~~d~--~~~~~~~~~i~~~P~~~vid~---~g-i~~~ 108 (123)
T cd03011 74 -GFPVINDP--DGVISARWGVSVTPAIVIVDP---GG-IVFV 108 (123)
T ss_pred -CccEEECC--CcHHHHhCCCCcccEEEEEcC---CC-eEEE
Confidence 2221 132 268999999999999999998 88 6643
No 85
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-15 Score=131.41 Aligned_cols=161 Identities=17% Similarity=0.268 Sum_probs=124.2
Q ss_pred HhhhcCCCCccc-CC-CC---CceeeccccCCcEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 015833 171 NLLTNHDRGYLL-GH-PP---DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 244 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~-~g---~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~ 244 (399)
.++|.++|+|+. .. .| . +++++++.||+++|+|| +...+.|..++..+.+.|++|+++ |++|++
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~-~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~---------g~eVig 72 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFE-EITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR---------GVEVIG 72 (194)
T ss_pred cccCCcCCCcEEEEEecCceee-EEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc---------CCEEEE
Confidence 468999999999 44 45 3 79999999999999999 668999999999999999999987 899999
Q ss_pred EecCC--CHHHHHHHHhcCCC---cccccCCchhHHHHHhCCCC------ccceEEEECCCCcEEecccchhhhhhcccC
Q 015833 245 VSTDR--DQTSFESYFGTMPW---LALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENA 313 (399)
Q Consensus 245 is~d~--~~~~~~~~~~~~~~---~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~ 313 (399)
||+|+ +..+|++...+.+. +.||+..|.+.++++.||+- ....+||||++|+|+.....++ ..|.
T Consensus 73 vS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~--~iGR-- 148 (194)
T COG0450 73 VSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPL--TIGR-- 148 (194)
T ss_pred EecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecC--CCCc--
Confidence 99996 45677777665554 78999999999999999984 4568999999999987754433 2332
Q ss_pred CCCChHHHHHHHHHHHHHhccCCCcccccccccceeeeecCCCCCC
Q 015833 314 YPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGP 359 (399)
Q Consensus 314 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (399)
.++++...++.+ .....| ...||..|-.|...
T Consensus 149 ------n~dEilR~idAl-------q~~~~h-g~vcPanW~~G~~~ 180 (194)
T COG0450 149 ------NVDEILRVIDAL-------QFVAKH-GEVCPANWKPGDKT 180 (194)
T ss_pred ------CHHHHHHHHHHH-------HHHHHh-CCCccCCCCCCCcc
Confidence 224444444321 133344 66788888776654
No 86
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.1e-15 Score=144.99 Aligned_cols=71 Identities=21% Similarity=0.422 Sum_probs=63.4
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
....++|.||||||+||++++|.+++++..++..+.++.+..| |++....++.+|+
T Consensus 41 ~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakV------------------------Dat~~~~~~~~y~ 96 (493)
T KOG0190|consen 41 GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKV------------------------DATEESDLASKYE 96 (493)
T ss_pred cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEe------------------------ecchhhhhHhhhc
Confidence 4568999999999999999999999999999998777888888 5555599999999
Q ss_pred CCCcCeEEEEcCCCCCCCe
Q 015833 111 IEGIPCLVVLQPYDDKDDA 129 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i 129 (399)
|+++||+.++. +|+.
T Consensus 97 v~gyPTlkiFr----nG~~ 111 (493)
T KOG0190|consen 97 VRGYPTLKIFR----NGRS 111 (493)
T ss_pred CCCCCeEEEEe----cCCc
Confidence 99999999998 6774
No 87
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.62 E-value=2.5e-15 Score=128.01 Aligned_cols=115 Identities=19% Similarity=0.291 Sum_probs=91.0
Q ss_pred ccCCeEEecCCCCEEeccccC-CC-EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhc
Q 015833 11 LRRRMTSTKEIGEEVKVSDLE-GK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 88 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~~~~-gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~ 88 (399)
.+|+|+++|.+|+.++++++. +| .++++||++||++|+.++|.|+++++++++.+ +.+++|+.|... ....+.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~~-~~~~~~~~ 77 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESPE-KLEAFDKG 77 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCHH-HHHHHHHh
Confidence 379999999999999999874 45 55555569999999999999999999998776 999999998654 34466666
Q ss_pred CCCcccccCChHHHHHHHhhcCCC-----------------------------CcCeEEEEcCCCCCCCeeecc
Q 015833 89 MPWLAVPYSDLETKKALNRKFDIE-----------------------------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 89 ~~~~~~~~~d~~~~~~l~~~~~v~-----------------------------~~P~~~lid~~~~~G~i~~~~ 133 (399)
.++....+.|.+ ..+.+.|++. .+|..+|||+ +|+|+...
T Consensus 78 ~~~~~p~~~D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~---~g~i~~~~ 146 (149)
T cd02970 78 KFLPFPVYADPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGP---DGTILFAH 146 (149)
T ss_pred cCCCCeEEECCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECC---CCeEEEEe
Confidence 554322233443 7888999984 7999999999 99988653
No 88
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.60 E-value=3.8e-15 Score=133.63 Aligned_cols=119 Identities=20% Similarity=0.335 Sum_probs=93.8
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEEEE-EEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH--HH-
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTAL-YFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN--AF- 82 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~--~~- 82 (399)
.+|..+|+|++.+..| .+++++++||+++| +||++||++|+.+++.|++++++|++.| +++++||+|.... ++
T Consensus 3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~~~~~w~ 79 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIYSHIAWL 79 (202)
T ss_pred CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence 4689999999999888 69999999997766 6889999999999999999999999876 9999999986532 33
Q ss_pred HHhHhcCCC-cccc-cCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 83 NNYRACMPW-LAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 83 ~~~~~~~~~-~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+++.++.+. ..+| +.|.+ ..+++.|++. .+|.++|||+ +|+|+...
T Consensus 80 ~~~~~~~g~~~~fPll~D~~--~~ia~~ygv~~~~~g~~~p~~fiId~---~G~I~~~~ 133 (202)
T PRK13190 80 RDIEERFGIKIPFPVIADID--KELAREYNLIDENSGATVRGVFIIDP---NQIVRWMI 133 (202)
T ss_pred HhHHHhcCCCceEEEEECCC--hHHHHHcCCccccCCcEEeEEEEECC---CCEEEEEE
Confidence 233333331 1222 23443 8899999984 5899999999 99998653
No 89
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.59 E-value=7.3e-15 Score=131.68 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=98.3
Q ss_pred CCccccccccccCCeEEec----CCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 015833 1 MSLSQWYVQQLRRRMTSTK----EIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 75 (399)
Q Consensus 1 ~~~~~~~~~~~~p~f~l~d----~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~ 75 (399)
||+....+|..+|+|++.+ .+|++++|++++||+++|+|| +.||++|..+++.|+++++++++.| ++|++||.
T Consensus 1 ~~~~~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~ 78 (199)
T PTZ00253 1 MSCGDAKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSM 78 (199)
T ss_pred CCccccccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeC
Confidence 7888888999999999654 567899999999999999999 5889999999999999999999876 99999999
Q ss_pred CCChHHHHHhHh---c--CCCcccc-cCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 76 DEDLNAFNNYRA---C--MPWLAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 76 D~~~~~~~~~~~---~--~~~~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
|........... . .+-+.+| +.|. ..++++.|++. .+|..+|||+ +|+++...
T Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~fpll~D~--~~~ia~~ygv~~~~~g~~~r~~fiID~---~G~i~~~~ 143 (199)
T PTZ00253 79 DSEYAHLQWTLQERKKGGLGTMAIPMLADK--TKSIARSYGVLEEEQGVAYRGLFIIDP---KGMLRQIT 143 (199)
T ss_pred CCHHHHHHHHhChHhhCCccccccceEECc--HhHHHHHcCCcccCCCceEEEEEEECC---CCEEEEEE
Confidence 865432211111 1 1111222 2243 48999999985 4799999999 99998753
No 90
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.59 E-value=1.5e-14 Score=122.33 Aligned_cols=98 Identities=21% Similarity=0.403 Sum_probs=76.4
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
..||+++|+||++||++|+.+.|.|.++++++.+ .+.++.|++|.+. ..
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~----------~~~~v~v~vd~~~---------------------~~ 66 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD----------QVNFVMLNVDNPK---------------------WL 66 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc----------CeeEEEEEcCCcc---------------------cH
Confidence 4589999999999999999999999999998864 3789999888542 14
Q ss_pred HHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhccCCC
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPR 337 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~ 337 (399)
.+++.|+|.++|++++||++|+++.+.. |.. .. ++|.+.+++++.+.+.
T Consensus 67 ~~~~~~~V~~iPt~v~~~~~G~~v~~~~-------G~~----~~---~~l~~~l~~l~~~~~~ 115 (142)
T cd02950 67 PEIDRYRVDGIPHFVFLDREGNEEGQSI-------GLQ----PK---QVLAQNLDALVAGEPL 115 (142)
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEEEEe-------CCC----CH---HHHHHHHHHHHcCCCC
Confidence 6788999999999999999999998743 311 22 4556666666554433
No 91
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.59 E-value=8e-15 Score=128.65 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=71.4
Q ss_pred CCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC------
Q 015833 176 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD------ 248 (399)
Q Consensus 176 ~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d------ 248 (399)
..++|++ +.+|+ .+++++++||+|||.|||+||+.|. .++.|++++++|+++ +++|++|+++
T Consensus 4 ~~~~f~~~~~~G~-~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~---------gl~Vlg~p~nqf~~qe 72 (183)
T PRK10606 4 SILTTVVTTIDGE-VTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ---------GFVVLGFPCNQFLGQE 72 (183)
T ss_pred CccCcEeECCCCC-EEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC---------CeEEEEeeccccccCC
Confidence 4688999 99999 9999999999999999999999996 699999999999876 8999999985
Q ss_pred -CCHHHHHHHHh-cCCCcccccC
Q 015833 249 -RDQTSFESYFG-TMPWLALPFG 269 (399)
Q Consensus 249 -~~~~~~~~~~~-~~~~~~~p~~ 269 (399)
.+.++++++++ +.+ ++||+.
T Consensus 73 ~~~~~ei~~f~~~~~g-~~Fpv~ 94 (183)
T PRK10606 73 PGSDEEIKTYCRTTWG-VTFPMF 94 (183)
T ss_pred CCCHHHHHHHHHHccC-CCceeE
Confidence 35678888887 454 677776
No 92
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.58 E-value=7.4e-15 Score=132.59 Aligned_cols=120 Identities=12% Similarity=0.078 Sum_probs=96.8
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEE-EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC--hHHHH
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVT-ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--LNAFN 83 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~--~~~~~ 83 (399)
.+|..+|+|++.+.+|+.+.+++++||++ |++||++|||+|.++++.|++++++|++.| ++|++||+|.. ...|.
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~ 80 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWV 80 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence 57899999999999999888899999975 678889999999999999999999999887 99999999974 34555
Q ss_pred HhHhcC---CCcccccCChHHHHHHHhhcCCC-------CcCeEEEEcCCCCCCCeeecc
Q 015833 84 NYRACM---PWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~~---~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+++++. +..+..++|. ..++++.||+. ..|++++||+ +|+|+...
T Consensus 81 ~~i~~~~~~~i~fPil~D~--~~~va~~yg~~~~~~~~~~~R~tfIID~---dG~Ir~~~ 135 (215)
T PRK13599 81 EWIKDNTNIAIPFPVIADD--LGKVSNQLGMIHPGKGTNTVRAVFIVDD---KGTIRLIM 135 (215)
T ss_pred HhHHHhcCCCCceeEEECC--CchHHHHcCCCccCCCCceeeEEEEECC---CCEEEEEE
Confidence 655532 2222223343 37889999983 5899999999 99998763
No 93
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.58 E-value=5.2e-15 Score=161.74 Aligned_cols=121 Identities=21% Similarity=0.164 Sum_probs=99.5
Q ss_pred cccccccCCeEEec--CCCCEEec-cccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec---C--C
Q 015833 6 WYVQQLRRRMTSTK--EIGEEVKV-SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS---D--E 77 (399)
Q Consensus 6 ~~~~~~~p~f~l~d--~~G~~v~l-~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~---D--~ 77 (399)
...|+.+|+|..++ .+|+++++ ++++||+|+|+|||+||++|+.++|.|+++++++++.+ ++|++|+. | +
T Consensus 391 ~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~~~~~D~~~ 468 (1057)
T PLN02919 391 KKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVHSAKFDNEK 468 (1057)
T ss_pred cccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEecccccccc
Confidence 45688999999876 68999998 68999999999999999999999999999999998765 99999974 3 3
Q ss_pred ChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 78 DLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+.++++.++.++......|. ...+.+.|+|.++|+++|||+ +|+++.+.
T Consensus 469 ~~~~~~~~~~~~~i~~pvv~D~--~~~~~~~~~V~~iPt~ilid~---~G~iv~~~ 519 (1057)
T PLN02919 469 DLEAIRNAVLRYNISHPVVNDG--DMYLWRELGVSSWPTFAVVSP---NGKLIAQL 519 (1057)
T ss_pred cHHHHHHHHHHhCCCccEEECC--chHHHHhcCCCccceEEEECC---CCeEEEEE
Confidence 4577888888766322112233 267889999999999999999 99998763
No 94
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.56 E-value=2.6e-14 Score=114.25 Aligned_cols=75 Identities=19% Similarity=0.388 Sum_probs=63.7
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
.+|++|+|+|||+||++|+.+.|.|.++++++ . ++.++.|++|.+.+ ..
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~----------~v~~~~vd~d~~~~--------------------~~ 61 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N----------DVVFLLVNGDENDS--------------------TM 61 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C----------CCEEEEEECCCChH--------------------HH
Confidence 35899999999999999999999999999888 2 47788888875521 25
Q ss_pred HHHHhCCCCccceEEEECCCCcEEecc
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
.+++.|+|.++||++++ ++|+++.+.
T Consensus 62 ~l~~~~~V~~~Pt~~~~-~~G~~v~~~ 87 (103)
T cd02985 62 ELCRREKIIEVPHFLFY-KDGEKIHEE 87 (103)
T ss_pred HHHHHcCCCcCCEEEEE-eCCeEEEEE
Confidence 78999999999998888 899998774
No 95
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.56 E-value=2.3e-14 Score=129.48 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=92.9
Q ss_pred ccccccCCeEEecCCCCEEeccccCCCEEEE-EEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH--HHH
Q 015833 7 YVQQLRRRMTSTKEIGEEVKVSDLEGKVTAL-YFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN--AFN 83 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~--~~~ 83 (399)
.+|..+|+|++.+.+|+...+++++||+++| +||++||++|.++++.|++++++|++.| ++|++||+|.... +|.
T Consensus 8 ~iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw~ 85 (215)
T PRK13191 8 LIGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEWV 85 (215)
T ss_pred cCCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHH
Confidence 5699999999999999744335589997766 7789999999999999999999999876 9999999987643 454
Q ss_pred HhHhc---CCCcccccCChHHHHHHHhhcCCC-------CcCeEEEEcCCCCCCCeeecc
Q 015833 84 NYRAC---MPWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~---~~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lid~~~~~G~i~~~~ 133 (399)
++.++ .+..+..++|.. ..+++.||+. ..|..+|||+ +|+|....
T Consensus 86 ~~~~~~~~~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~---~G~Ir~~~ 140 (215)
T PRK13191 86 MWIEKNLKVEVPFPIIADPM--GNVAKRLGMIHAESSTATVRAVFIVDD---KGTVRLIL 140 (215)
T ss_pred hhHHHhcCCCCceEEEECCc--hHHHHHcCCcccccCCceeEEEEEECC---CCEEEEEE
Confidence 44442 222222233433 8999999973 3799999999 99998764
No 96
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.55 E-value=3.6e-14 Score=130.74 Aligned_cols=123 Identities=16% Similarity=0.155 Sum_probs=94.5
Q ss_pred ccccccccCCeEEec-CCC--CEEecccc-CCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC-
Q 015833 5 QWYVQQLRRRMTSTK-EIG--EEVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED- 78 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d-~~G--~~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~- 78 (399)
...+|..+|+|++++ .+| ++++|+++ +||+++|+|| ++||++|.++++.|++++++|++.| ++|++||.|..
T Consensus 67 ~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~ 144 (261)
T PTZ00137 67 SSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPF 144 (261)
T ss_pred cccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHH
Confidence 446899999999987 455 46899998 8988888888 9999999999999999999999887 99999999873
Q ss_pred -hHHHHHh-Hhc---CCCcccccCChHHHHHHHhhcCCC-----CcCeEEEEcCCCCCCCeeeccc
Q 015833 79 -LNAFNNY-RAC---MPWLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 79 -~~~~~~~-~~~---~~~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lid~~~~~G~i~~~~~ 134 (399)
..+|.+. .++ .+..+..++|. ..++++.||+. ..|+.+|||+ +|+|++...
T Consensus 145 ~h~aw~~~~~~~~g~~~l~fPlLsD~--~~~iakayGv~~~~g~a~R~tFIID~---dG~I~~~~~ 205 (261)
T PTZ00137 145 SHKAWKELDVRQGGVSPLKFPLFSDI--SREVSKSFGLLRDEGFSHRASVLVDK---AGVVKHVAV 205 (261)
T ss_pred HHHHHHhhhhhhccccCcceEEEEcC--ChHHHHHcCCCCcCCceecEEEEECC---CCEEEEEEE
Confidence 2233332 222 12111122343 38899999985 5899999999 999987643
No 97
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.54 E-value=4e-14 Score=124.97 Aligned_cols=120 Identities=25% Similarity=0.337 Sum_probs=93.6
Q ss_pred ccccccCCeEEecC-CC--CEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 015833 7 YVQQLRRRMTSTKE-IG--EEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82 (399)
Q Consensus 7 ~~~~~~p~f~l~d~-~G--~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~ 82 (399)
.+|..+|+|+++-. +| .+++|++++||+++|+|| ++||++|..+++.|+++++++.+.| +++++||.|.. ...
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~-~~~ 79 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTH-FTH 79 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCH-HHH
Confidence 47889999998863 34 467888999999999999 9999999999999999999998876 99999999865 334
Q ss_pred HHhHhcC----CCcccccCChHHHHHHHhhcCC----CCc--CeEEEEcCCCCCCCeeeccc
Q 015833 83 NNYRACM----PWLAVPYSDLETKKALNRKFDI----EGI--PCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 83 ~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v----~~~--P~~~lid~~~~~G~i~~~~~ 134 (399)
+++.+.. +..+...+|. ...+++.|++ .+. |++++||+ +|+|++...
T Consensus 80 ~a~~~~~~~~~~l~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfIID~---~G~I~~~~~ 136 (187)
T PRK10382 80 KAWHSSSETIAKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDP---QGIIQAIEV 136 (187)
T ss_pred HHHHHhhccccCCceeEEEcC--chHHHHHcCCCcccCCceeeEEEEECC---CCEEEEEEE
Confidence 4444321 2111122343 4899999998 355 99999999 999987743
No 98
>PRK15000 peroxidase; Provisional
Probab=99.53 E-value=3.7e-14 Score=126.82 Aligned_cols=119 Identities=23% Similarity=0.312 Sum_probs=91.0
Q ss_pred cccccCCeEEecCC--CCE---Eecccc-CCCEEEEEEec-CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh-
Q 015833 8 VQQLRRRMTSTKEI--GEE---VKVSDL-EGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL- 79 (399)
Q Consensus 8 ~~~~~p~f~l~d~~--G~~---v~l~~~-~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~- 79 (399)
+|..+|+|++.+.. |+. ++++++ +||+++|+||+ .||++|+++++.|++++++|++.| ++|++||.|...
T Consensus 4 vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~~~ 81 (200)
T PRK15000 4 VTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSEFV 81 (200)
T ss_pred CCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHH
Confidence 78999999999864 453 455555 89999999998 599999999999999999999876 999999998543
Q ss_pred -HHHHH-hHhcCCC--cccc-cCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeecc
Q 015833 80 -NAFNN-YRACMPW--LAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 -~~~~~-~~~~~~~--~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~~ 133 (399)
..|.+ +.++.+. +.+| ++|. ...+++.|++. ..|..++||+ +|+|++..
T Consensus 82 ~~~w~~~~~~~~g~~~i~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfiID~---~G~I~~~~ 141 (200)
T PRK15000 82 HNAWRNTPVDKGGIGPVKYAMVADV--KREIQKAYGIEHPDEGVALRGSFLIDA---NGIVRHQV 141 (200)
T ss_pred HHHHHhhHHHhCCccccCceEEECC--CcHHHHHcCCccCCCCcEEeEEEEECC---CCEEEEEE
Confidence 23333 2222221 1222 2344 37899999997 6999999999 99998763
No 99
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.53 E-value=6.9e-14 Score=125.67 Aligned_cols=118 Identities=13% Similarity=0.199 Sum_probs=89.0
Q ss_pred cccccCCeEEecCCCCEEeccccCC-CEE-EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh--HHHH
Q 015833 8 VQQLRRRMTSTKEIGEEVKVSDLEG-KVT-ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL--NAFN 83 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G~~v~l~~~~g-k~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~--~~~~ 83 (399)
+|..+|+|++.+.+|. +++++++| |++ |++||++|||.|..+++.|++++++|++.| ++|++||+|... .++.
T Consensus 1 vG~~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~~~~~~~ 77 (203)
T cd03016 1 LGDTAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVESHIKWI 77 (203)
T ss_pred CcCCCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHH
Confidence 4788999999999985 89999988 655 557889999999999999999999999876 999999998642 1222
Q ss_pred HhHhc---CCCcccccCChHHHHHHHhhcCCC----C----cCeEEEEcCCCCCCCeeecc
Q 015833 84 NYRAC---MPWLAVPYSDLETKKALNRKFDIE----G----IPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 84 ~~~~~---~~~~~~~~~d~~~~~~l~~~~~v~----~----~P~~~lid~~~~~G~i~~~~ 133 (399)
+..+. ....+..++|. ...+++.|++. + .|..+|||+ +|+|+...
T Consensus 78 ~~i~~~~~~~~~fpil~D~--~~~ia~~yg~~~~~~~~~~~~r~~fiID~---~G~I~~~~ 133 (203)
T cd03016 78 EDIEEYTGVEIPFPIIADP--DREVAKLLGMIDPDAGSTLTVRAVFIIDP---DKKIRLIL 133 (203)
T ss_pred hhHHHhcCCCCceeEEECc--hHHHHHHcCCccccCCCCceeeEEEEECC---CCeEEEEE
Confidence 22221 22211122343 38899999985 2 357999999 99998664
No 100
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.51 E-value=9.7e-14 Score=111.49 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=63.9
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++|+|+|||+||++|+.+.|.|.++.+++.+. +.++-|++|.. .+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~----------v~f~kVDvD~~-----------------------~~ 59 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF----------AVIYLVDIDEV-----------------------PD 59 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc----------eEEEEEECCCC-----------------------HH
Confidence 3578999999999999999999999999998643 67788887755 78
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++||++++ ++|+.+.+.
T Consensus 60 la~~~~V~~iPTf~~f-k~G~~v~~~ 84 (114)
T cd02954 60 FNKMYELYDPPTVMFF-FRNKHMKID 84 (114)
T ss_pred HHHHcCCCCCCEEEEE-ECCEEEEEE
Confidence 9999999999999999 899999875
No 101
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.51 E-value=8e-14 Score=119.78 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=99.6
Q ss_pred hhcCCCCccc-CCC---CCceeeccc-cCCcEEEEEEe-cCCChhhhhh-HHHHHHHHHHHHhhhhhcCCCCCCE-EEEE
Q 015833 173 LTNHDRGYLL-GHP---PDEKVPVSS-LVGKTVGLYFS-ARWCIPCEKF-MPKLLSIYQKIKQNLVEKGDALEDF-EVVF 244 (399)
Q Consensus 173 ~g~~~p~f~l-~~~---g~~~~~l~~-~~gk~vll~F~-a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~~~~~~~-~vv~ 244 (399)
+|..+|+|++ +.+ |+ .+++++ ++||+++|+|| +.|||.|..+ ++.|.+.+++|.+. +. .|++
T Consensus 1 vG~~aPdF~l~~~~~~~g~-~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~---------g~~~V~~ 70 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPN-PVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK---------GVDEVIC 70 (155)
T ss_pred CCCcCCCeEeeeeccCCCc-eeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC---------CCCEEEE
Confidence 4788999999 664 88 999999 58988777777 6799999999 99999999999876 78 6999
Q ss_pred EecCCCHHHHHHHHhcCCC-cccccCCchhHHHHHhCCCC-----------ccceEEEECCCCcEEeccc
Q 015833 245 VSTDRDQTSFESYFGTMPW-LALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 245 is~d~~~~~~~~~~~~~~~-~~~p~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~ 302 (399)
||.| +....+++.++++. ..+|++.|.+.++++.||+. ..+.+|||| +|+|++...
T Consensus 71 iS~D-~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~ 138 (155)
T cd03013 71 VSVN-DPFVMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFV 138 (155)
T ss_pred EECC-CHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEE
Confidence 9999 55667778887775 48999999999999999982 146789999 699997753
No 102
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.50 E-value=6.4e-14 Score=122.29 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=88.2
Q ss_pred cccccccCCeEEecC-----CC-----CEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEE-----
Q 015833 6 WYVQQLRRRMTSTKE-----IG-----EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEV----- 70 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~-----~G-----~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~i----- 70 (399)
+.+|+..|..++.|. +| +.+++++++||+++|+|||+||++|+.++|.|.++ ++.+ +.+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~--~~~~~y~~ 96 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAK--FPPVKYQT 96 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcC--CCcccccc
Confidence 456788888877664 33 46677889999999999999999999999999988 3333 777
Q ss_pred -EEEecCCChHHHHHhHh----c----CCCcccccCChHHHHHHHhhcCCCCcCeE-EEEcCCCCCCCeeeccc
Q 015833 71 -VFVSSDEDLNAFNNYRA----C----MPWLAVPYSDLETKKALNRKFDIEGIPCL-VVLQPYDDKDDATLHDG 134 (399)
Q Consensus 71 -i~Vs~D~~~~~~~~~~~----~----~~~~~~~~~d~~~~~~l~~~~~v~~~P~~-~lid~~~~~G~i~~~~~ 134 (399)
+.||.|++......|.+ + .+|..+.. |. ...+...|++.++|+. ++||+ +|+++....
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll-D~--~g~v~~~~gv~~~P~T~fVIDk---~GkVv~~~~ 164 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL-DD--KGAVKNAWQLNSEDSAIIVLDK---TGKVKFVKE 164 (184)
T ss_pred eEEEECccchhhHHHHHHHHHHHhcccCCcceEEE-CC--cchHHHhcCCCCCCceEEEECC---CCcEEEEEe
Confidence 89999876555444433 2 33433333 43 3678889999999988 89999 999997643
No 103
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=8.7e-14 Score=115.15 Aligned_cols=72 Identities=25% Similarity=0.532 Sum_probs=65.2
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+.+|+|+|||+||+||+.+.|.|+++..+|.++ +++.-|++|.. .++
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~----------~k~~kvdtD~~-----------------------~el 107 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK----------FKLYKVDTDEH-----------------------PEL 107 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe----------EEEEEEccccc-----------------------cch
Confidence 478999999999999999999999999999765 88888888865 789
Q ss_pred HHhCCCCccceEEEECCCCcEEeccc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
+..|+|.++||+++| ++|+.+.+..
T Consensus 108 a~~Y~I~avPtvlvf-knGe~~d~~v 132 (150)
T KOG0910|consen 108 AEDYEISAVPTVLVF-KNGEKVDRFV 132 (150)
T ss_pred HhhcceeeeeEEEEE-ECCEEeeeec
Confidence 999999999999999 8999997743
No 104
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.50 E-value=1.2e-13 Score=110.24 Aligned_cols=72 Identities=14% Similarity=0.262 Sum_probs=61.4
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+|||+||++|+.+.|.+.++++++++. .+.++.|++| + .+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~---------~~~~~~vd~d-~-----------------------~~ 62 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD---------LLHFATAEAD-T-----------------------ID 62 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC---------cEEEEEEeCC-C-----------------------HH
Confidence 3789999999999999999999999999988643 4677777777 4 45
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|+++||++++ ++|+.+.+.
T Consensus 63 ~~~~~~v~~~Pt~~~~-~~g~~~~~~ 87 (102)
T cd02948 63 TLKRYRGKCEPTFLFY-KNGELVAVI 87 (102)
T ss_pred HHHHcCCCcCcEEEEE-ECCEEEEEE
Confidence 7899999999999999 799988774
No 105
>PRK13189 peroxiredoxin; Provisional
Probab=99.50 E-value=1.6e-13 Score=124.74 Aligned_cols=121 Identities=15% Similarity=0.197 Sum_probs=91.7
Q ss_pred ccccccccCCeEEecCCCCEEeccc-cCCCEEE-EEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH--
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSD-LEGKVTA-LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN-- 80 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~-~~gk~vl-v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~-- 80 (399)
...+|..+|+|++++..|+ +++++ ++||+++ ++||++||++|.++++.|++++++|++.+ ++|++||+|....
T Consensus 8 ~~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~ 84 (222)
T PRK13189 8 MPLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHI 84 (222)
T ss_pred cccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHH
Confidence 3457999999999999996 67776 5999655 57789999999999999999999999876 9999999996542
Q ss_pred HHHHhH-hcC--CCcccccCChHHHHHHHhhcCCC-------CcCeEEEEcCCCCCCCeeecc
Q 015833 81 AFNNYR-ACM--PWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 81 ~~~~~~-~~~--~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lid~~~~~G~i~~~~ 133 (399)
+|.+.. +.. +..+..++|. ...+++.||+. ..|.++|||+ +|+|.+..
T Consensus 85 aw~~~~~~~~g~~i~fPllsD~--~~~ia~~ygv~~~~~~~~~~r~tfIID~---~G~Ir~~~ 142 (222)
T PRK13189 85 KWVEWIKEKLGVEIEFPIIADD--RGEIAKKLGMISPGKGTNTVRAVFIIDP---KGIIRAIL 142 (222)
T ss_pred HHHHhHHHhcCcCcceeEEEcC--ccHHHHHhCCCccccCCCceeEEEEECC---CCeEEEEE
Confidence 233322 211 2111122343 37899999985 4699999999 99998664
No 106
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.50 E-value=5.9e-14 Score=121.79 Aligned_cols=97 Identities=19% Similarity=0.283 Sum_probs=75.8
Q ss_pred cccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcC
Q 015833 10 QLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM 89 (399)
Q Consensus 10 ~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~ 89 (399)
...|+|++. +|+.+++++++ +|+||++|||+|+.++|.|+++++++ + ++|++|++|...+ .
T Consensus 53 ~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g--~~Vi~Vs~D~~~~--------~ 113 (181)
T PRK13728 53 PAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---G--FSVFPYTLDGQGD--------T 113 (181)
T ss_pred CCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---C--CEEEEEEeCCCCC--------C
Confidence 356788884 99999999998 77799999999999999999999997 3 8999999986632 1
Q ss_pred CCcccccCChHHHHHHHhhcCC--CCcCeEEEEcCCCCCCCeee
Q 015833 90 PWLAVPYSDLETKKALNRKFDI--EGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 90 ~~~~~~~~d~~~~~~l~~~~~v--~~~P~~~lid~~~~~G~i~~ 131 (399)
. +|..-.+....+.+.|++ .++|+++|||+ +|+++.
T Consensus 114 ~---fPv~~dd~~~~~~~~~g~~~~~iPttfLId~---~G~i~~ 151 (181)
T PRK13728 114 A---FPEALPAPPDVMQTFFPNIPVATPTTFLVNV---NTLEAL 151 (181)
T ss_pred C---CceEecCchhHHHHHhCCCCCCCCeEEEEeC---CCcEEE
Confidence 1 221110112567788995 69999999999 999864
No 107
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.49 E-value=1.2e-13 Score=117.69 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=59.7
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++.+|+|||+||++|++++|.|+++++++ ++.|++|++|.... ..+|...+.....
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~------------~~~Vi~Vs~d~~~~-----------~~fp~~~~~~~~~ 106 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF------------GLPVYAFSLDGQGL-----------TGFPDPLPATPEV 106 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc------------CCcEEEEEeCCCcc-----------cccccccCCchHH
Confidence 345699999999999999999999999876 36799999985431 1234333322333
Q ss_pred -HHhC---CCCccceEEEECCCCcEEe
Q 015833 277 -TKYF---DVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 277 -~~~~---~v~~~P~~~lid~~G~i~~ 299 (399)
...| ++.++|+++|||++|+++.
T Consensus 107 ~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 107 MQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred HHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 3455 8899999999999988643
No 108
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.47 E-value=2.5e-13 Score=109.07 Aligned_cols=72 Identities=24% Similarity=0.450 Sum_probs=63.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+|||+||++|+.+.|.|.++++++.+. +.++.|++|+. .+++++|+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~------------------------~~la~~~~ 65 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEV------------------------PDFNKMYE 65 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCC------------------------HHHHHHcC
Confidence 4789999999999999999999999999998654 67888877644 78999999
Q ss_pred CCCcCeEEEEcCCCCCCCeeecc
Q 015833 111 IEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
|.++||++++. +|+.+...
T Consensus 66 V~~iPTf~~fk----~G~~v~~~ 84 (114)
T cd02954 66 LYDPPTVMFFF----RNKHMKID 84 (114)
T ss_pred CCCCCEEEEEE----CCEEEEEE
Confidence 99999999998 88888664
No 109
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.47 E-value=8.9e-14 Score=117.65 Aligned_cols=89 Identities=16% Similarity=0.294 Sum_probs=72.6
Q ss_pred EEecCCCCEEecccc--CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcc
Q 015833 16 TSTKEIGEEVKVSDL--EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLA 93 (399)
Q Consensus 16 ~l~d~~G~~v~l~~~--~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~ 93 (399)
+|++++++..++++. +||+++|+|||+||++|+.++|.|.++++.+++. +.++.|++|.+.
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~-------------- 64 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPK-------------- 64 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCcc--------------
Confidence 455666666666653 7899999999999999999999999999998653 778888776431
Q ss_pred cccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 94 VPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 94 ~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
...+.++|+|.++|+++++++ +|+++..
T Consensus 65 --------~~~~~~~~~V~~iPt~v~~~~---~G~~v~~ 92 (142)
T cd02950 65 --------WLPEIDRYRVDGIPHFVFLDR---EGNEEGQ 92 (142)
T ss_pred --------cHHHHHHcCCCCCCEEEEECC---CCCEEEE
Confidence 146778999999999999998 9998865
No 110
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.47 E-value=3.6e-13 Score=109.15 Aligned_cols=73 Identities=16% Similarity=0.402 Sum_probs=63.4
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.|++++|+||++||++|+.+.|.+.++.+++++. ++.++.|++|.+ ..
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~---------~v~~~~vd~d~~-----------------------~~ 70 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL---------GVGIATVNAGHE-----------------------RR 70 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc---------CceEEEEecccc-----------------------HH
Confidence 5789999999999999999999999999999753 577787777744 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++||++++ ++|+++.+.
T Consensus 71 l~~~~~V~~~Pt~~i~-~~g~~~~~~ 95 (111)
T cd02963 71 LARKLGAHSVPAIVGI-INGQVTFYH 95 (111)
T ss_pred HHHHcCCccCCEEEEE-ECCEEEEEe
Confidence 8999999999999999 699888773
No 111
>PHA02278 thioredoxin-like protein
Probab=99.46 E-value=2.6e-13 Score=108.00 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=63.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|+|||+||++|+.+.|.+.++.+++.. ...++.|++|.+.. | ...
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~----------~~~~~~vdvd~~~~------------------d-~~~ 63 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI----------KKPILTLNLDAEDV------------------D-REK 63 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC----------CceEEEEECCcccc------------------c-cHH
Confidence 468999999999999999999999999877532 35688888885420 0 257
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++||++++ ++|+.+.+.
T Consensus 64 l~~~~~I~~iPT~i~f-k~G~~v~~~ 88 (103)
T PHA02278 64 AVKLFDIMSTPVLIGY-KDGQLVKKY 88 (103)
T ss_pred HHHHCCCccccEEEEE-ECCEEEEEE
Confidence 8999999999999999 899999874
No 112
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.46 E-value=2.5e-13 Score=108.49 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=62.0
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
+.+||+|+|+|||+||++|+.++|.|+++++++ . ++.++.|+.|.+.+ ...++++
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~--~v~~~~vd~d~~~~---------------------~~~l~~~ 66 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--N--DVVFLLVNGDENDS---------------------TMELCRR 66 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--C--CCEEEEEECCCChH---------------------HHHHHHH
Confidence 346899999999999999999999999999998 2 37888888765411 1678899
Q ss_pred cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 109 FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 109 ~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+|.++|+++++ + +|+++..
T Consensus 67 ~~V~~~Pt~~~~-~---~G~~v~~ 86 (103)
T cd02985 67 EKIIEVPHFLFY-K---DGEKIHE 86 (103)
T ss_pred cCCCcCCEEEEE-e---CCeEEEE
Confidence 999999998888 5 8887754
No 113
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.45 E-value=2.5e-12 Score=129.88 Aligned_cols=68 Identities=22% Similarity=0.473 Sum_probs=58.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+|||+||++|+.+.|.+.++++.+.+.+.++.++.|+.+.. .+++++|+
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~ 72 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE------------------------KDLAQKYG 72 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc------------------------HHHHHhCC
Confidence 578999999999999999999999999999987655678887755432 78899999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|+++++..
T Consensus 73 i~~~Pt~~~~~~ 84 (462)
T TIGR01130 73 VSGYPTLKIFRN 84 (462)
T ss_pred CccccEEEEEeC
Confidence 999999999973
No 114
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.45 E-value=3.2e-13 Score=107.25 Aligned_cols=71 Identities=14% Similarity=0.287 Sum_probs=57.9
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
++++||+|+|.|||+||++|+.+.|.|++++++++ ++.++.|..+..
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-----------~~~~~~vd~~~~---------------------- 60 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-----------QIRHLAIEESSI---------------------- 60 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-----------cCceEEEECCCC----------------------
Confidence 34679999999999999999999999999999885 355666654411
Q ss_pred hHHHHHhCCCCccceEEEECCCCcE
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i 297 (399)
...+++.|+|.++||+++++ +|.+
T Consensus 61 ~~~l~~~~~V~~~PT~~lf~-~g~~ 84 (100)
T cd02999 61 KPSLLSRYGVVGFPTILLFN-STPR 84 (100)
T ss_pred CHHHHHhcCCeecCEEEEEc-CCce
Confidence 26889999999999999995 5543
No 115
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.45 E-value=1e-12 Score=115.12 Aligned_cols=120 Identities=20% Similarity=0.386 Sum_probs=95.8
Q ss_pred ccccCCeEEecCCCCEEeccccCCCEEEEEEecCCCc-ccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC---ChHHHHH
Q 015833 9 QQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---DLNAFNN 84 (399)
Q Consensus 9 ~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~---~~~~~~~ 84 (399)
....|+|+|.|.+|+++++++++||+++|+|..+.|| .|...+..|+++.+++.+.+.++++++||+|. +.+.+++
T Consensus 29 ~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~ 108 (174)
T PF02630_consen 29 PRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKK 108 (174)
T ss_dssp SCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHH
T ss_pred CccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHH
Confidence 3467899999999999999999999999999999999 99999999999999999877789999999985 3567788
Q ss_pred hHhcCC--CcccccCChHHHHHHHhhcCC----------------CCcCeEEEEcCCCCCCCeeec
Q 015833 85 YRACMP--WLAVPYSDLETKKALNRKFDI----------------EGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 85 ~~~~~~--~~~~~~~d~~~~~~l~~~~~v----------------~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.+.++ |..+.+ +.....++.+.|++ .+...++|||+ +|+++..
T Consensus 109 Y~~~~~~~~~~ltg-~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp---~G~i~~~ 170 (174)
T PF02630_consen 109 YAKKFGPDFIGLTG-SREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDP---DGRIRAI 170 (174)
T ss_dssp HHHCHTTTCEEEEE-EHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-T---TSEEEEE
T ss_pred HHHhcCCCcceeEe-CHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcC---CCcEEEE
Confidence 888543 555544 33334677777765 25678999999 9998754
No 116
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.45 E-value=1.1e-12 Score=115.21 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=69.0
Q ss_pred cccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChHHH
Q 015833 10 QLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNAF 82 (399)
Q Consensus 10 ~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-------~~~~~~ 82 (399)
...++|+++|.+|+.++|++++||++||.|||+||++|. +++.|++++++|++.| ++|++|+.+ .+.++.
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG--FVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC--eEEEEeeccccccCCCCCHHHH
Confidence 357899999999999999999999999999999999996 6999999999999877 999999985 356778
Q ss_pred HHhHh-cCC
Q 015833 83 NNYRA-CMP 90 (399)
Q Consensus 83 ~~~~~-~~~ 90 (399)
.++.+ +++
T Consensus 80 ~~f~~~~~g 88 (183)
T PRK10606 80 KTYCRTTWG 88 (183)
T ss_pred HHHHHHccC
Confidence 88886 454
No 117
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.43 E-value=9.1e-13 Score=103.68 Aligned_cols=72 Identities=21% Similarity=0.355 Sum_probs=61.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+|++++|+||++||++|+.+.|.+.++++.+.+ .+.++.|++|.. ..
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~ 57 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG----------QFVLAKVNCDAQ-----------------------PQ 57 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC----------cEEEEEEeccCC-----------------------HH
Confidence 478999999999999999999999999998864 366777776644 68
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|++++++ +|+++.+.
T Consensus 58 l~~~~~i~~~Pt~~~~~-~g~~~~~~ 82 (96)
T cd02956 58 IAQQFGVQALPTVYLFA-AGQPVDGF 82 (96)
T ss_pred HHHHcCCCCCCEEEEEe-CCEEeeee
Confidence 99999999999999995 89887653
No 118
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.39 E-value=2.7e-12 Score=106.23 Aligned_cols=87 Identities=28% Similarity=0.468 Sum_probs=65.8
Q ss_pred CC-cEEEEEEecCCChhhhhhHHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 015833 196 VG-KTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 271 (399)
Q Consensus 196 ~g-k~vll~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 271 (399)
.| |+++|+||++||++|+.+.+.+. .+.+.+.+ ++.++.|++|.+.... . ++-...
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~d~~~~~~-~---------~~~~~~ 71 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA----------HFVVVYINIDGDKEVT-D---------FDGEAL 71 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh----------heEEEEEEccCCceee-c---------cCCCCc
Confidence 47 89999999999999999999875 45555543 4788888887553211 1 111122
Q ss_pred hhHHHHHhCCCCccceEEEECCC-CcEEeccc
Q 015833 272 TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQG 302 (399)
Q Consensus 272 ~~~~~~~~~~v~~~P~~~lid~~-G~i~~~~~ 302 (399)
....+++.|+|.++|+++++|++ |+++.+..
T Consensus 72 ~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~ 103 (125)
T cd02951 72 SEKELARKYRVRFTPTVIFLDPEGGKEIARLP 103 (125)
T ss_pred cHHHHHHHcCCccccEEEEEcCCCCceeEEec
Confidence 45789999999999999999999 89988743
No 119
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.2e-12 Score=104.37 Aligned_cols=69 Identities=32% Similarity=0.576 Sum_probs=61.3
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+|.++|+|+|+||++|+.+.|.+.++..+|. ++.++.|++|.. .++
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~-----------~v~Flkvdvde~-----------------------~~~ 66 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYP-----------DVVFLKVDVDEL-----------------------EEV 66 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCC-----------CCEEEEEecccC-----------------------HhH
Confidence 5899999999999999999999999999986 356777777752 789
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.|+|+++||++++ ++|+.+.+
T Consensus 67 ~~~~~V~~~PTf~f~-k~g~~~~~ 89 (106)
T KOG0907|consen 67 AKEFNVKAMPTFVFY-KGGEEVDE 89 (106)
T ss_pred HHhcCceEeeEEEEE-ECCEEEEE
Confidence 999999999999999 89988877
No 120
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.39 E-value=1.1e-12 Score=104.07 Aligned_cols=68 Identities=16% Similarity=0.342 Sum_probs=56.7
Q ss_pred cccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 28 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
++++||+++|+|||+||++|+.++|.|.++++.+++ +.++.|+.+. ....+++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~-----------------------~~~~l~~ 66 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESS-----------------------IKPSLLS 66 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCC-----------------------CCHHHHH
Confidence 457899999999999999999999999999999852 5666664431 1167889
Q ss_pred hcCCCCcCeEEEEcC
Q 015833 108 KFDIEGIPCLVVLQP 122 (399)
Q Consensus 108 ~~~v~~~P~~~lid~ 122 (399)
+|+|.++||++++++
T Consensus 67 ~~~V~~~PT~~lf~~ 81 (100)
T cd02999 67 RYGVVGFPTILLFNS 81 (100)
T ss_pred hcCCeecCEEEEEcC
Confidence 999999999999984
No 121
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.3e-12 Score=119.66 Aligned_cols=72 Identities=28% Similarity=0.495 Sum_probs=65.5
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+.++|||+||+|||++|++++|.|+++..+|+++ +.++.|++|.+ ..
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~----------f~LakvN~D~~-----------------------p~ 88 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK----------FKLAKVNCDAE-----------------------PM 88 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc----------eEEEEecCCcc-----------------------hh
Confidence 3469999999999999999999999999999875 88888888866 78
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++..|||+++|++|+| ++|+.|.-.
T Consensus 89 vAaqfgiqsIPtV~af-~dGqpVdgF 113 (304)
T COG3118 89 VAAQFGVQSIPTVYAF-KDGQPVDGF 113 (304)
T ss_pred HHHHhCcCcCCeEEEe-eCCcCcccc
Confidence 9999999999999999 999999764
No 122
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.38 E-value=1.3e-12 Score=103.91 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=61.8
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
..+++++|+||++||++|+.+.|.+.++++++++ .+.++.|++|.. .
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~----------~~~~~~vd~~~~-----------------------~ 62 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG----------VIRIGAVNCGDD-----------------------R 62 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC----------ceEEEEEeCCcc-----------------------H
Confidence 3468999999999999999999999999999864 377888887754 6
Q ss_pred HHHHhCCCCccceEEEECCCCcEEec
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
.+++.|+|+++||++++ ++|+.+.+
T Consensus 63 ~~~~~~~v~~~Pt~~~~-~~g~~~~~ 87 (101)
T cd03003 63 MLCRSQGVNSYPSLYVF-PSGMNPEK 87 (101)
T ss_pred HHHHHcCCCccCEEEEE-cCCCCccc
Confidence 78999999999999999 78886655
No 123
>PHA02278 thioredoxin-like protein
Probab=99.36 E-value=2e-12 Score=102.91 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=60.9
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+|||+||++|+.+.|.+.++++++... ..++.|++|.+.. | ..+++++|+
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~-----------------d---~~~l~~~~~ 69 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDV-----------------D---REKAVKLFD 69 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCcccc-----------------c---cHHHHHHCC
Confidence 6889999999999999999999999998875332 5678888774411 1 167899999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++||++++. +|+.+.+
T Consensus 70 I~~iPT~i~fk----~G~~v~~ 87 (103)
T PHA02278 70 IMSTPVLIGYK----DGQLVKK 87 (103)
T ss_pred CccccEEEEEE----CCEEEEE
Confidence 99999999998 7877755
No 124
>PRK09381 trxA thioredoxin; Provisional
Probab=99.36 E-value=5.9e-12 Score=101.53 Aligned_cols=71 Identities=23% Similarity=0.514 Sum_probs=62.1
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.|+++++++.+ ++.++.|++|.. ..+
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~----------~~~~~~vd~~~~-----------------------~~~ 67 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG----------KLTVAKLNIDQN-----------------------PGT 67 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC----------CcEEEEEECCCC-----------------------hhH
Confidence 67899999999999999999999999998864 478888888755 567
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|++.++|+++++ ++|+++.+.
T Consensus 68 ~~~~~v~~~Pt~~~~-~~G~~~~~~ 91 (109)
T PRK09381 68 APKYGIRGIPTLLLF-KNGEVAATK 91 (109)
T ss_pred HHhCCCCcCCEEEEE-eCCeEEEEe
Confidence 889999999999999 799988764
No 125
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.35 E-value=3.6e-12 Score=119.14 Aligned_cols=86 Identities=17% Similarity=0.289 Sum_probs=69.5
Q ss_pred eeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 015833 189 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 268 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 268 (399)
...++++.|+++||+||++||++|+.++|.|+++++++ +++|++|++|.... ..+|.
T Consensus 158 ~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y------------g~~Vi~VsvD~~~~-----------~~fp~ 214 (271)
T TIGR02740 158 DRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY------------GIEVLPVSVDGGPL-----------PGFPN 214 (271)
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc------------CcEEEEEeCCCCcc-----------ccCCc
Confidence 35677889999999999999999999999999998886 37899999996532 12444
Q ss_pred CCchhHHHHHhCCCCccceEEEECCCCcEE
Q 015833 269 GDPTIKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 269 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
.. .+..+++.|||.++|+++|+|++|+.+
T Consensus 215 ~~-~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 215 AR-PDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred cc-CCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 42 345688999999999999999865444
No 126
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.9e-12 Score=107.31 Aligned_cols=71 Identities=21% Similarity=0.478 Sum_probs=62.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.++||+|+|||+||+||+.+.|.|+++..++.+. +.+..|++|+. .+++.+|+
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~------------------------~ela~~Y~ 112 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEH------------------------PELAEDYE 112 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccc------------------------cchHhhcc
Confidence 4689999999999999999999999999999765 89998877644 78899999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|+++++. +|..+.+
T Consensus 113 I~avPtvlvfk----nGe~~d~ 130 (150)
T KOG0910|consen 113 ISAVPTVLVFK----NGEKVDR 130 (150)
T ss_pred eeeeeEEEEEE----CCEEeee
Confidence 99999999998 7776633
No 127
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.35 E-value=3.7e-12 Score=103.08 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=59.2
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++++|.|||+||++|+.+.|.++++++++++. +.++.|++|.+ ..
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~----------v~~~~Vd~d~~-----------------------~~ 74 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ----------VLFVAINCWWP-----------------------QG 74 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC----------eEEEEEECCCC-----------------------hH
Confidence 4589999999999999999999999999998643 67777877755 56
Q ss_pred HH-HhCCCCccceEEEECCCCcEEec
Q 015833 276 LT-KYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 276 ~~-~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++ +.|+|+++||++++ ++|+...+
T Consensus 75 l~~~~~~I~~~PTl~lf-~~g~~~~~ 99 (113)
T cd03006 75 KCRKQKHFFYFPVIHLY-YRSRGPIE 99 (113)
T ss_pred HHHHhcCCcccCEEEEE-ECCccceE
Confidence 77 68999999999999 78875433
No 128
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.34 E-value=5.5e-12 Score=108.35 Aligned_cols=117 Identities=15% Similarity=0.248 Sum_probs=91.7
Q ss_pred cccccCCeEEecCC---CCEEeccc-cCCCEEEEEEe-cCCCcccHhh-HHHHHHHHHHHhcCCCcE-EEEEEecCCChH
Q 015833 8 VQQLRRRMTSTKEI---GEEVKVSD-LEGKVTALYFS-ANWYPPCGNF-TGVLVDVYEELRNNGSDF-EVVFVSSDEDLN 80 (399)
Q Consensus 8 ~~~~~p~f~l~d~~---G~~v~l~~-~~gk~vlv~F~-a~wC~~C~~~-~p~l~~l~~~~~~~~~~~-~ii~Vs~D~~~~ 80 (399)
+|..+|+|+|++.+ |+.++|++ ++||+++|+|| +.|||.|..+ ++.|++.+++|.+.| . +|++||.|...
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~- 77 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPF- 77 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHH-
Confidence 47889999999986 99999999 58887766666 9999999999 999999999999876 7 59999998654
Q ss_pred HHHHhHhcCCC--cccccCChHHHHHHHhhcCCC------C-----cCeEEEEcCCCCCCCeeecc
Q 015833 81 AFNNYRACMPW--LAVPYSDLETKKALNRKFDIE------G-----IPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 81 ~~~~~~~~~~~--~~~~~~d~~~~~~l~~~~~v~------~-----~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+++.++... .....+|. ..++++.||+. + ...+++|| +|+|++..
T Consensus 78 ~~~~~~~~~~~~~~f~lLsD~--~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId----~g~I~~~~ 137 (155)
T cd03013 78 VMKAWGKALGAKDKIRFLADG--NGEFTKALGLTLDLSAAGGGIRSKRYALIVD----DGKVKYLF 137 (155)
T ss_pred HHHHHHHhhCCCCcEEEEECC--CHHHHHHcCCCccccccCCcceeeeEEEEEC----CCEEEEEE
Confidence 56777776654 12233454 38999999983 1 35678887 78887654
No 129
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.34 E-value=4.3e-12 Score=102.78 Aligned_cols=74 Identities=20% Similarity=0.356 Sum_probs=62.3
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
..+|++++|+|||+||++|+.+.|.+.++++++++.+ +.++.|+.|.. ..++++
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d~~------------------------~~l~~~ 74 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAGHE------------------------RRLARK 74 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEecccc------------------------HHHHHH
Confidence 3478999999999999999999999999999997643 77888866533 678899
Q ss_pred cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 109 FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 109 ~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+|.++|+++++. +|+.+..
T Consensus 75 ~~V~~~Pt~~i~~----~g~~~~~ 94 (111)
T cd02963 75 LGAHSVPAIVGII----NGQVTFY 94 (111)
T ss_pred cCCccCCEEEEEE----CCEEEEE
Confidence 9999999999996 7776644
No 130
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.34 E-value=4.5e-12 Score=101.05 Aligned_cols=71 Identities=11% Similarity=0.267 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+|||+||++|+.++|.|.++++.+++. .+.++.|+.| . .+++++|+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~--~~~~~~vd~d-~------------------------~~~~~~~~ 68 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD--LLHFATAEAD-T------------------------IDTLKRYR 68 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC--cEEEEEEeCC-C------------------------HHHHHHcC
Confidence 5889999999999999999999999999998754 3677777554 2 56789999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+++|+++++. +|+.+.+
T Consensus 69 v~~~Pt~~~~~----~g~~~~~ 86 (102)
T cd02948 69 GKCEPTFLFYK----NGELVAV 86 (102)
T ss_pred CCcCcEEEEEE----CCEEEEE
Confidence 99999988886 7877644
No 131
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.33 E-value=3.4e-12 Score=101.47 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=59.6
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
.++++++|+||++||++|+.+.|.+.++++++++. +.+..|+.|.. ..++++|
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~------------------------~~~~~~~ 68 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDD------------------------RMLCRSQ 68 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCcc------------------------HHHHHHc
Confidence 45789999999999999999999999999998643 88888877533 6788999
Q ss_pred CCCCcCeEEEEcCCCCCCCee
Q 015833 110 DIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i~ 130 (399)
+|.++|+++++. +|+.+
T Consensus 69 ~v~~~Pt~~~~~----~g~~~ 85 (101)
T cd03003 69 GVNSYPSLYVFP----SGMNP 85 (101)
T ss_pred CCCccCEEEEEc----CCCCc
Confidence 999999999995 66543
No 132
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.32 E-value=7.7e-12 Score=98.37 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=60.0
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.+.|.+.++++.+.+. +.++.|+.|.. ..++++|+
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~------------------------~~l~~~~~ 63 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQ------------------------PQIAQQFG 63 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCC------------------------HHHHHHcC
Confidence 5789999999999999999999999999998643 77787866533 78899999
Q ss_pred CCCcCeEEEEcCCCCCCCeee
Q 015833 111 IEGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~ 131 (399)
|.++|++++++ +|+.+.
T Consensus 64 i~~~Pt~~~~~----~g~~~~ 80 (96)
T cd02956 64 VQALPTVYLFA----AGQPVD 80 (96)
T ss_pred CCCCCEEEEEe----CCEEee
Confidence 99999999997 776653
No 133
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.32 E-value=9.8e-12 Score=105.78 Aligned_cols=75 Identities=20% Similarity=0.370 Sum_probs=64.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++++|+||++||++|+.+.|.++++.+++.+. ++.++.|++|.. .+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~---------~v~f~~VDvd~~-----------------------~~ 93 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN---------NLKFGKIDIGRF-----------------------PN 93 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC---------CeEEEEEECCCC-----------------------HH
Confidence 3578999999999999999999999999988643 588999988866 56
Q ss_pred HHHhCCCCc------cceEEEECCCCcEEecccc
Q 015833 276 LTKYFDVQG------IPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 276 ~~~~~~v~~------~P~~~lid~~G~i~~~~~~ 303 (399)
+++.|+|.+ +||++++ ++|+.+.+..+
T Consensus 94 la~~~~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 94 VAEKFRVSTSPLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred HHHHcCceecCCcCCCCEEEEE-ECCEEEEEEec
Confidence 788888877 9999999 79999987655
No 134
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.32 E-value=2.2e-11 Score=97.32 Aligned_cols=71 Identities=18% Similarity=0.300 Sum_probs=56.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++++|.||++||++|+.+.|.|+++++++++. +.++.+..++++.. ..
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~-------~~~~~~~~vd~~~~-----------------------~~ 63 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSS-------GSPVRVGKLDATAY-----------------------SS 63 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhc-------CCcEEEEEEECccC-----------------------Hh
Confidence 3578999999999999999999999999998754 22456666655533 57
Q ss_pred HHHhCCCCccceEEEECCCCcE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i 297 (399)
+++.|+|.++|+++++ ++|.+
T Consensus 64 ~~~~~~I~~~Pt~~l~-~~~~~ 84 (104)
T cd03000 64 IASEFGVRGYPTIKLL-KGDLA 84 (104)
T ss_pred HHhhcCCccccEEEEE-cCCCc
Confidence 8899999999999999 45543
No 135
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.32 E-value=9.1e-12 Score=99.57 Aligned_cols=77 Identities=25% Similarity=0.443 Sum_probs=61.5
Q ss_pred CCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
.||+++|+||++||++|+.+.+.+ .++.+.+.+ ++.++.|+++.+.. .
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~----------~~~~~~vd~~~~~~-------------------~ 60 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK----------DVVLLRADWTKNDP-------------------E 60 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC----------CeEEEEEecCCCCH-------------------H
Confidence 478999999999999999999887 567766653 47788887764321 1
Q ss_pred hHHHHHhCCCCccceEEEECC-CCcEEecc
Q 015833 273 IKELTKYFDVQGIPCLVIIGP-EGKTVTKQ 301 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~~ 301 (399)
...+++.|++.++|+++++++ +|+++.+.
T Consensus 61 ~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~ 90 (104)
T cd02953 61 ITALLKRFGVFGPPTYLFYGPGGEPEPLRL 90 (104)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCCCCccc
Confidence 367899999999999999988 89887664
No 136
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.31 E-value=3.8e-12 Score=108.57 Aligned_cols=88 Identities=18% Similarity=0.287 Sum_probs=62.1
Q ss_pred CCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChH
Q 015833 21 IGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE 100 (399)
Q Consensus 21 ~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~ 100 (399)
.|+++++++ +.+|+|||+||++|++++|.|+++++++ + +.|++|+.|.... ..++ ..+.. .
T Consensus 43 ~G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~---~--~~Vi~Vs~d~~~~------~~fp---~~~~~-~ 103 (153)
T TIGR02738 43 QGRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQF---G--LPVYAFSLDGQGL------TGFP---DPLPA-T 103 (153)
T ss_pred cchhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHc---C--CcEEEEEeCCCcc------cccc---cccCC-c
Confidence 355566554 4599999999999999999999999887 2 7789999886531 1122 11211 1
Q ss_pred HHHHHHhhc---CCCCcCeEEEEcCCCCCCCeee
Q 015833 101 TKKALNRKF---DIEGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 101 ~~~~l~~~~---~v~~~P~~~lid~~~~~G~i~~ 131 (399)
. ..+.+.| ++.++|+++|||+ +|.++.
T Consensus 104 ~-~~~~~~~~~~~v~~iPTt~LID~---~G~~i~ 133 (153)
T TIGR02738 104 P-EVMQTFFPNPRPVVTPATFLVNV---NTRKAY 133 (153)
T ss_pred h-HHHHHHhccCCCCCCCeEEEEeC---CCCEEE
Confidence 1 2233455 8899999999999 987643
No 137
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.31 E-value=1.6e-11 Score=97.51 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=57.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+|+ ++|+|||+||++|+.+.|.+.++++.++.. ++.+..|+++.+ ..
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~---------~v~~~~vd~~~~-----------------------~~ 62 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL---------GINVAKVDVTQE-----------------------PG 62 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC---------CeEEEEEEccCC-----------------------Hh
Confidence 455 689999999999999999999999876532 577777776644 56
Q ss_pred HHHhCCCCccceEEEECCCCcEE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
+++.|+|.++||++++ ++|++.
T Consensus 63 ~~~~~~i~~~Pt~~~~-~~g~~~ 84 (101)
T cd02994 63 LSGRFFVTALPTIYHA-KDGVFR 84 (101)
T ss_pred HHHHcCCcccCEEEEe-CCCCEE
Confidence 8899999999999998 889863
No 138
>PRK10996 thioredoxin 2; Provisional
Probab=99.31 E-value=1.8e-11 Score=103.22 Aligned_cols=72 Identities=28% Similarity=0.535 Sum_probs=61.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++|+|+||++||++|+.+.|.|.++++++.+ ++.++.|++|.. ..
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~----------~v~~~~vd~~~~-----------------------~~ 97 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG----------KVRFVKVNTEAE-----------------------RE 97 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC----------CeEEEEEeCCCC-----------------------HH
Confidence 368999999999999999999999999988753 466777766544 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|.++|+++++ ++|+++.+.
T Consensus 98 l~~~~~V~~~Ptlii~-~~G~~v~~~ 122 (139)
T PRK10996 98 LSARFRIRSIPTIMIF-KNGQVVDML 122 (139)
T ss_pred HHHhcCCCccCEEEEE-ECCEEEEEE
Confidence 8999999999999999 689998773
No 139
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.30 E-value=1e-11 Score=99.16 Aligned_cols=71 Identities=18% Similarity=0.369 Sum_probs=59.6
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|.||++||++|+.+.|.+.++.+++.+ .+.++.|++|.. ..+
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~ 65 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKG----------KVKVGSVDCQKY-----------------------ESL 65 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CcEEEEEECCch-----------------------HHH
Confidence 56999999999999999999999999998853 367777776643 678
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.|+|+++||++++.++|+.+.+
T Consensus 66 ~~~~~i~~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 66 CQQANIRAYPTIRLYPGNASKYHS 89 (104)
T ss_pred HHHcCCCcccEEEEEcCCCCCceE
Confidence 999999999999999665466655
No 140
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.30 E-value=1.1e-11 Score=100.24 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=55.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH-hhc
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN-RKF 109 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~-~~~ 109 (399)
++++++|+|||+||++|+.++|.+.++++++++. +.++.|+.|.. ..++ ++|
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~------------------------~~l~~~~~ 80 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWP------------------------QGKCRKQK 80 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC------------------------hHHHHHhc
Confidence 5789999999999999999999999999999653 78888876543 5667 589
Q ss_pred CCCCcCeEEEEc
Q 015833 110 DIEGIPCLVVLQ 121 (399)
Q Consensus 110 ~v~~~P~~~lid 121 (399)
+|.++||++++.
T Consensus 81 ~I~~~PTl~lf~ 92 (113)
T cd03006 81 HFFYFPVIHLYY 92 (113)
T ss_pred CCcccCEEEEEE
Confidence 999999999995
No 141
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.29 E-value=8.1e-12 Score=101.13 Aligned_cols=96 Identities=26% Similarity=0.442 Sum_probs=65.2
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+||+++++||++||++|+.+.+.+.+..+-.... ..++.++.++++.............+. +.......+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 73 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYL-------KDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKE 73 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEE-------HCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHh-------hcCeEEEEEecCCcccccccccccccc---hhhhHHHHH
Confidence 4799999999999999999988888654421111 125788888888665544444442221 222224578
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+|+++||++++|++|+++.+.
T Consensus 74 l~~~~~v~gtPt~~~~d~~G~~v~~~ 99 (112)
T PF13098_consen 74 LAQRYGVNGTPTIVFLDKDGKIVYRI 99 (112)
T ss_dssp HHHHTT--SSSEEEECTTTSCEEEEE
T ss_pred HHHHcCCCccCEEEEEcCCCCEEEEe
Confidence 99999999999999999999988763
No 142
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.29 E-value=2.2e-11 Score=106.71 Aligned_cols=121 Identities=21% Similarity=0.361 Sum_probs=95.1
Q ss_pred hhcCCCCccc-CCCCCceeeccccCCcEEEEEEecCCCh-hhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-
Q 015833 173 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 249 (399)
Q Consensus 173 ~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~- 249 (399)
.....++|++ +.+|+ .+++++++||+++|+|..+.|| .|...+..|.++.+++.+. +.++++++||+|.
T Consensus 28 ~~~~~~~f~L~d~~G~-~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~-------~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGK-TVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE-------GKDVQFVFISVDPE 99 (174)
T ss_dssp TSCSSST-EEEETTSS-EEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT-------TTTEEEEEEESSTT
T ss_pred CCccCCCcEEEcCCCC-EecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc-------cCceEEEEEEeCCC
Confidence 4456789999 99999 9999999999999999999997 7999999999999998865 4589999999995
Q ss_pred --CHHHHHHHHhcCC--CcccccCCchhHHHHHhCCCC----------------ccceEEEECCCCcEEecc
Q 015833 250 --DQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQ----------------GIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 250 --~~~~~~~~~~~~~--~~~~p~~~d~~~~~~~~~~v~----------------~~P~~~lid~~G~i~~~~ 301 (399)
+++..++|.+..+ |..+....+...++++.|++. ....++|||++|+++...
T Consensus 100 ~DTp~~L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y 171 (174)
T PF02630_consen 100 RDTPEVLKKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIY 171 (174)
T ss_dssp TC-HHHHHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEE
T ss_pred CCCHHHHHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEE
Confidence 4667888888543 555544445667888888863 223689999999998763
No 143
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.28 E-value=4.1e-11 Score=100.06 Aligned_cols=72 Identities=13% Similarity=0.213 Sum_probs=60.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++|+|.|||+||++|+.+.|.|.++++++++. +.|+-|++|.. ++
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~----------~~~~kVDVDe~-----------------------~d 68 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF----------AVIYLVDITEV-----------------------PD 68 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc----------eEEEEEECCCC-----------------------HH
Confidence 3579999999999999999999999999998753 67788888855 78
Q ss_pred HHHhCCCCccceEE-EECCCCc-EEecc
Q 015833 276 LTKYFDVQGIPCLV-IIGPEGK-TVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~-lid~~G~-i~~~~ 301 (399)
+++.|+|++.|+++ ++ ++|+ .+.+.
T Consensus 69 la~~y~I~~~~t~~~ff-k~g~~~vd~~ 95 (142)
T PLN00410 69 FNTMYELYDPCTVMFFF-RNKHIMIDLG 95 (142)
T ss_pred HHHHcCccCCCcEEEEE-ECCeEEEEEe
Confidence 99999999777666 77 8888 66664
No 144
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.28 E-value=3e-11 Score=98.07 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=61.0
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++|+|+||++||++|+.+.|.|.++.+++. ++.++-|++|.. ..+
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-----------~i~f~~Vd~~~~-----------------------~~l 67 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHL-----------ETKFIKVNAEKA-----------------------PFL 67 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcC-----------CCEEEEEEcccC-----------------------HHH
Confidence 5789999999999999999999999998874 467777777654 679
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|.++||++++ ++|+.+.+.
T Consensus 68 ~~~~~v~~vPt~l~f-k~G~~v~~~ 91 (113)
T cd02989 68 VEKLNIKVLPTVILF-KNGKTVDRI 91 (113)
T ss_pred HHHCCCccCCEEEEE-ECCEEEEEE
Confidence 999999999999999 899988774
No 145
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.28 E-value=3.5e-11 Score=96.86 Aligned_cols=74 Identities=19% Similarity=0.336 Sum_probs=58.6
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+|||+||++|+.+.|.+.++++++++... ....+.++.|++|.+ ..+
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~----~~~~~~~~~vd~d~~-----------------------~~l 70 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFP----DAGKVVWGKVDCDKE-----------------------SDI 70 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccC----CCCcEEEEEEECCCC-----------------------HHH
Confidence 57899999999999999999999999998864300 001356666666644 679
Q ss_pred HHhCCCCccceEEEECCCCcEE
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~ 298 (399)
++.|+|+++|+++++ ++|++.
T Consensus 71 ~~~~~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 71 ADRYRINKYPTLKLF-RNGMMM 91 (108)
T ss_pred HHhCCCCcCCEEEEE-eCCcCc
Confidence 999999999999999 788843
No 146
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.27 E-value=2.1e-11 Score=98.41 Aligned_cols=72 Identities=15% Similarity=0.379 Sum_probs=59.7
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+|++++|.||++||++|+.+.|.+.++++++++. ++.++.|.+|.+. ..
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~---------~~~~~~vd~d~~~----------------------~~ 68 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS---------NVKVAKFNADGEQ----------------------RE 68 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC---------CeEEEEEECCccc----------------------hh
Confidence 4689999999999999999999999999998753 6888888887531 44
Q ss_pred HHH-hCCCCccceEEEECCCCcEE
Q 015833 276 LTK-YFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 276 ~~~-~~~v~~~P~~~lid~~G~i~ 298 (399)
+++ .|+++++||+++++++++..
T Consensus 69 ~~~~~~~v~~~Pti~~f~~~~~~~ 92 (109)
T cd02993 69 FAKEELQLKSFPTILFFPKNSRQP 92 (109)
T ss_pred hHHhhcCCCcCCEEEEEcCCCCCc
Confidence 565 59999999999998776543
No 147
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.27 E-value=1.6e-11 Score=97.99 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=60.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+|+|+|.|+|+||++|+.+.|.|.+++++|++. +.++.|++|.. ++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~----------~~f~kVDVDev-----------------------~d 59 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM----------ASIYLVDVDKV-----------------------PV 59 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc----------eEEEEEecccc-----------------------HH
Confidence 4789999999999999999999999999998642 56777777744 78
Q ss_pred HHHhCCCCccceEEEECCCCcEEec
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
+++.|+|.++||++++ ++|+-+..
T Consensus 60 va~~y~I~amPtfvff-kngkh~~~ 83 (114)
T cd02986 60 YTQYFDISYIPSTIFF-FNGQHMKV 83 (114)
T ss_pred HHHhcCceeCcEEEEE-ECCcEEEE
Confidence 9999999999999999 77765544
No 148
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.27 E-value=8.1e-12 Score=102.01 Aligned_cols=76 Identities=22% Similarity=0.479 Sum_probs=57.7
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
+..++|+|+|+|||+||++|+.+.|.+.+..+.... +..++.|.+|.+.
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~----------~~~fv~v~vd~~~--------------------- 63 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL----------SHNFVMVNLEDDE--------------------- 63 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh----------cCcEEEEEecCCC---------------------
Confidence 344579999999999999999999999887665432 2346667776542
Q ss_pred hHHHHHhCCCCc--cceEEEECCCCcEEec
Q 015833 273 IKELTKYFDVQG--IPCLVIIGPEGKTVTK 300 (399)
Q Consensus 273 ~~~~~~~~~v~~--~P~~~lid~~G~i~~~ 300 (399)
....+.|++.+ +|+++++|++|+++.+
T Consensus 64 -~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 64 -EPKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred -CchhhhcccCCCccceEEEECCCCCCchh
Confidence 22345677765 9999999999999875
No 149
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=7.5e-12 Score=123.48 Aligned_cols=133 Identities=24% Similarity=0.378 Sum_probs=90.7
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|.||++||++|..+.|.+.++.+.+++. +....+|++. +..+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~------------~~~~~vd~~~---------------------~~~~ 93 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK------------VKIGAVDCDE---------------------HKDL 93 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCc------------eEEEEeCchh---------------------hHHH
Confidence 468999999999999999999999999888743 4445556554 3899
Q ss_pred HHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhccCCCc-ccccccccc-----eee
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRS-EFHIGHRHE-----LNL 350 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~-----~~~ 350 (399)
++.|+|+++||+.++.++.+++...+. ...+...+.+.+.++......... +.......- ...
T Consensus 94 ~~~y~i~gfPtl~~f~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 162 (383)
T KOG0191|consen 94 CEKYGIQGFPTLKVFRPGKKPIDYSGP-----------RNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSD 162 (383)
T ss_pred HHhcCCccCcEEEEEcCCCceeeccCc-----------ccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccC
Confidence 999999999999999666455555432 123334444555554444433333 222222111 122
Q ss_pred eecCCCCCCeecCCCCCCCCcee
Q 015833 351 VSEGTGGGPFICCDCDEQGSGWA 373 (399)
Q Consensus 351 ~~~~~~~~~~~c~~C~~~~~~w~ 373 (399)
..|+..+.+|||+||+++.|.|.
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~ 185 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWE 185 (383)
T ss_pred cceEEEEeccccHHhhhcChHHH
Confidence 33667778999999999999984
No 150
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.25 E-value=3.5e-11 Score=96.88 Aligned_cols=68 Identities=28% Similarity=0.478 Sum_probs=58.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.+.++++++.+ .+.++.|++|.+. ...+
T Consensus 18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~----------~~~~~~v~~~~~~---------------------~~~~ 66 (109)
T cd03002 18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG----------LVQVAAVDCDEDK---------------------NKPL 66 (109)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHhcC----------CceEEEEecCccc---------------------cHHH
Confidence 67899999999999999999999999988864 3788888887532 2678
Q ss_pred HHhCCCCccceEEEECCCC
Q 015833 277 TKYFDVQGIPCLVIIGPEG 295 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G 295 (399)
++.|+|.++|+++++++++
T Consensus 67 ~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 67 CGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred HHHcCCCcCCEEEEEeCCC
Confidence 9999999999999997766
No 151
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.25 E-value=3.7e-11 Score=94.58 Aligned_cols=71 Identities=18% Similarity=0.402 Sum_probs=58.6
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.|.++.+++.. ++.++.|..+.. .++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~----------~i~~~~vd~~~~-----------------------~~~ 60 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP----------SVLFLSIEAEEL-----------------------PEI 60 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC----------ceEEEEEccccC-----------------------HHH
Confidence 68999999999999999999999999988632 455655544422 678
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|++.++|+++++ ++|+++.+.
T Consensus 61 ~~~~~i~~~Pt~~~~-~~g~~~~~~ 84 (97)
T cd02984 61 SEKFEITAVPTFVFF-RNGTIVDRV 84 (97)
T ss_pred HHhcCCccccEEEEE-ECCEEEEEE
Confidence 999999999999999 689988774
No 152
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.25 E-value=4.3e-11 Score=101.85 Aligned_cols=75 Identities=17% Similarity=0.348 Sum_probs=62.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.+.|.++++++++.+. ++.++.|++|+. .+++++|+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~--~v~f~~VDvd~~------------------------~~la~~~~ 99 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN--NLKFGKIDIGRF------------------------PNVAEKFR 99 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC--CeEEEEEECCCC------------------------HHHHHHcC
Confidence 4679999999999999999999999999998654 389999987655 56777778
Q ss_pred CCC------cCeEEEEcCCCCCCCeeeccch
Q 015833 111 IEG------IPCLVVLQPYDDKDDATLHDGV 135 (399)
Q Consensus 111 v~~------~P~~~lid~~~~~G~i~~~~~~ 135 (399)
|.+ +||++++. +|+.+.+...
T Consensus 100 V~~~~~v~~~PT~ilf~----~Gk~v~r~~G 126 (152)
T cd02962 100 VSTSPLSKQLPTIILFQ----GGKEVARRPY 126 (152)
T ss_pred ceecCCcCCCCEEEEEE----CCEEEEEEec
Confidence 776 99999997 7887766443
No 153
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.25 E-value=3.3e-11 Score=95.70 Aligned_cols=71 Identities=25% Similarity=0.523 Sum_probs=58.6
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 015833 199 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 278 (399)
Q Consensus 199 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~ 278 (399)
+++|+||++||++|+.+.|.+.++++++++. ..++.++.|+++.. ..+++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~~~~~~vd~~~~-----------------------~~~~~ 67 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNE-------NPSVKIAKVDCTQH-----------------------RELCS 67 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhcc-------CCcEEEEEEECCCC-----------------------hhhHh
Confidence 4999999999999999999999999998752 12467777766543 57889
Q ss_pred hCCCCccceEEEECCCCcEEec
Q 015833 279 YFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 279 ~~~v~~~P~~~lid~~G~i~~~ 300 (399)
.|+|.++|+++++ ++|+.+.+
T Consensus 68 ~~~v~~~Pt~~~~-~~g~~~~~ 88 (102)
T cd03005 68 EFQVRGYPTLLLF-KDGEKVDK 88 (102)
T ss_pred hcCCCcCCEEEEE-eCCCeeeE
Confidence 9999999999999 78876654
No 154
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.24 E-value=3.6e-11 Score=96.01 Aligned_cols=65 Identities=18% Similarity=0.293 Sum_probs=56.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.+.++++++++. +.++.|+.|.. ..++++|+
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~ 70 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKY------------------------ESLCQQAN 70 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCch------------------------HHHHHHcC
Confidence 4679999999999999999999999999998543 77887866422 77899999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|+++++..
T Consensus 71 i~~~Pt~~~~~~ 82 (104)
T cd03004 71 IRAYPTIRLYPG 82 (104)
T ss_pred CCcccEEEEEcC
Confidence 999999999985
No 155
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.23 E-value=3.5e-11 Score=95.99 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=59.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+|+|.|+|+||++|+.+.|.|.++++++++. +.++.|++|+. .++++.|+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev------------------------~dva~~y~ 65 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKV------------------------PVYTQYFD 65 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEecccc------------------------HHHHHhcC
Confidence 6899999999999999999999999999999542 67777766633 88999999
Q ss_pred CCCcCeEEEEcCCCCCCCee
Q 015833 111 IEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~ 130 (399)
|...|+++++. +|+-.
T Consensus 66 I~amPtfvffk----ngkh~ 81 (114)
T cd02986 66 ISYIPSTIFFF----NGQHM 81 (114)
T ss_pred ceeCcEEEEEE----CCcEE
Confidence 99999999887 55544
No 156
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.23 E-value=9.1e-11 Score=93.06 Aligned_cols=70 Identities=34% Similarity=0.710 Sum_probs=60.2
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.|.++.+++.+ ++.++.|+++.. ..+
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~----------~v~~~~vd~~~~-----------------------~~l 63 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD----------NVKFAKVDCDEN-----------------------KEL 63 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT----------TSEEEEEETTTS-----------------------HHH
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc----------ccccchhhhhcc-----------------------chh
Confidence 68999999999999999999999999998864 366777766644 789
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.|+|.++|+++++ ++|+.+.+
T Consensus 64 ~~~~~v~~~Pt~~~~-~~g~~~~~ 86 (103)
T PF00085_consen 64 CKKYGVKSVPTIIFF-KNGKEVKR 86 (103)
T ss_dssp HHHTTCSSSSEEEEE-ETTEEEEE
T ss_pred hhccCCCCCCEEEEE-ECCcEEEE
Confidence 999999999999999 77877765
No 157
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.23 E-value=5.2e-11 Score=97.12 Aligned_cols=71 Identities=8% Similarity=0.157 Sum_probs=59.3
Q ss_pred cEEEEEEecCCChh--hh--hhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 198 KTVGLYFSARWCIP--CE--KFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 198 k~vll~F~a~wC~~--C~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
.++|++||++||++ |+ ...|.+.+++.++-.. .++.++.|++|.+
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~--------~~v~~~kVD~d~~----------------------- 76 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED--------KGIGFGLVDSKKD----------------------- 76 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc--------CCCEEEEEeCCCC-----------------------
Confidence 58999999999987 99 7888889988887322 2578888888855
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEec
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
.++++.|+|+++||++|+ ++|+++..
T Consensus 77 ~~La~~~~I~~iPTl~lf-k~G~~v~~ 102 (120)
T cd03065 77 AKVAKKLGLDEEDSIYVF-KDDEVIEY 102 (120)
T ss_pred HHHHHHcCCccccEEEEE-ECCEEEEe
Confidence 789999999999999999 89998764
No 158
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.23 E-value=7.3e-11 Score=93.09 Aligned_cols=72 Identities=17% Similarity=0.382 Sum_probs=61.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+++|+++||++||+.|+.+.|.+.++.+++.+ ++.++.|+.|.+ .+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~----------~v~~~~id~d~~-----------------------~~ 58 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG----------AVHFVEIDIDED-----------------------QE 58 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC----------ceEEEEEECCCC-----------------------HH
Confidence 368999999999999999999999999888753 467777777644 67
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.+++.++|+++++ ++|+++.+.
T Consensus 59 l~~~~~v~~vPt~~i~-~~g~~v~~~ 83 (97)
T cd02949 59 IAEAAGIMGTPTVQFF-KDKELVKEI 83 (97)
T ss_pred HHHHCCCeeccEEEEE-ECCeEEEEE
Confidence 8899999999999999 589988663
No 159
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.23 E-value=3.4e-11 Score=97.81 Aligned_cols=71 Identities=18% Similarity=0.309 Sum_probs=58.2
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++|+|+||++||++|+.+.|.|+++++++. ++.++.|+++ . . .+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-----------~v~f~~vd~~--~---------------------~-~l 68 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP-----------ETKFVKINAE--K---------------------A-FL 68 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-----------CcEEEEEEch--h---------------------h-HH
Confidence 4789999999999999999999999998874 3455555443 2 2 68
Q ss_pred HHhCCCCccceEEEECCCCcEEecccc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
++.|+|.++||++++ ++|+.+.+..+
T Consensus 69 ~~~~~i~~~Pt~~~f-~~G~~v~~~~G 94 (113)
T cd02957 69 VNYLDIKVLPTLLVY-KNGELIDNIVG 94 (113)
T ss_pred HHhcCCCcCCEEEEE-ECCEEEEEEec
Confidence 899999999999999 89999877533
No 160
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.7e-11 Score=96.60 Aligned_cols=70 Identities=19% Similarity=0.415 Sum_probs=59.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+|+++|+|+|+||+||+.+.|.+.+++.+|.+ +.++.|++|+ ...+++.++
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde------------------------~~~~~~~~~ 71 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE------------------------LEEVAKEFN 71 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc------------------------CHhHHHhcC
Confidence 469999999999999999999999999999854 6777787763 288999999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|..+||++++. +|+.+..
T Consensus 72 V~~~PTf~f~k----~g~~~~~ 89 (106)
T KOG0907|consen 72 VKAMPTFVFYK----GGEEVDE 89 (106)
T ss_pred ceEeeEEEEEE----CCEEEEE
Confidence 99999999997 6655543
No 161
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.21 E-value=6.4e-11 Score=94.66 Aligned_cols=67 Identities=22% Similarity=0.423 Sum_probs=56.0
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.++|.|.++++.+++.+.++.+..++.+.. ..++++|+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~------------------------~~~~~~~~ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY------------------------SSIASEFG 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC------------------------HhHHhhcC
Confidence 467999999999999999999999999999976543466666655322 57788999
Q ss_pred CCCcCeEEEEc
Q 015833 111 IEGIPCLVVLQ 121 (399)
Q Consensus 111 v~~~P~~~lid 121 (399)
|.++|++++++
T Consensus 70 I~~~Pt~~l~~ 80 (104)
T cd03000 70 VRGYPTIKLLK 80 (104)
T ss_pred CccccEEEEEc
Confidence 99999999996
No 162
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.21 E-value=4.2e-11 Score=95.61 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=63.6
Q ss_pred CCcEEEEEEecCC--ChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 196 VGKTVGLYFSARW--CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 196 ~gk~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
.|.+++|.||++| ||+|..+.|.|.++.++|.+. +.++-|++|.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~----------v~f~kVdid~~----------------------- 72 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR----------FRAAVVGRADE----------------------- 72 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc----------EEEEEEECCCC-----------------------
Confidence 3567999999997 999999999999999998754 67777777755
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
.+++..|+|+++||++++ ++|+++.+..
T Consensus 73 ~~la~~f~V~sIPTli~f-kdGk~v~~~~ 100 (111)
T cd02965 73 QALAARFGVLRTPALLFF-RDGRYVGVLA 100 (111)
T ss_pred HHHHHHcCCCcCCEEEEE-ECCEEEEEEe
Confidence 689999999999999999 8999998743
No 163
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.21 E-value=1.4e-10 Score=94.31 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=58.6
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.+.++++++++. ...+.+..|+++.+. ...+
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~-------~~~v~~~~vd~~~~~---------------------~~~~ 70 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW-------RPVVRVAAVDCADEE---------------------NVAL 70 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc-------CCceEEEEEeccchh---------------------hHHH
Confidence 379999999999999999999999999998753 123666666654332 3678
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.|+++++|+++++ ++|.....
T Consensus 71 ~~~~~i~~~Pt~~lf-~~~~~~~~ 93 (114)
T cd02992 71 CRDFGVTGYPTLRYF-PPFSKEAT 93 (114)
T ss_pred HHhCCCCCCCEEEEE-CCCCccCC
Confidence 999999999999999 55554444
No 164
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.20 E-value=8.1e-11 Score=94.73 Aligned_cols=71 Identities=11% Similarity=0.249 Sum_probs=58.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCC---CcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNG---SDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~---~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
.+++++|+|||+||++|+.+.|.+.++++.+++.. .++.++.|+.|.. ..+++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~------------------------~~l~~ 72 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE------------------------SDIAD 72 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC------------------------HHHHH
Confidence 46899999999999999999999999999986431 1367777766533 77899
Q ss_pred hcCCCCcCeEEEEcCCCCCCCe
Q 015833 108 KFDIEGIPCLVVLQPYDDKDDA 129 (399)
Q Consensus 108 ~~~v~~~P~~~lid~~~~~G~i 129 (399)
+|+|+++|+++++. +|++
T Consensus 73 ~~~v~~~Ptl~~~~----~g~~ 90 (108)
T cd02996 73 RYRINKYPTLKLFR----NGMM 90 (108)
T ss_pred hCCCCcCCEEEEEe----CCcC
Confidence 99999999999996 6763
No 165
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.20 E-value=8.4e-11 Score=93.15 Aligned_cols=72 Identities=26% Similarity=0.497 Sum_probs=58.6
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++++|.||++||++|+.+.+.+.++.+.++.. .++.++.+.+|.. ..
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~~-----------------------~~ 60 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD--------PDIVLAKVDATAE-----------------------KD 60 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC--------CceEEEEEEccch-----------------------HH
Confidence 5789999999999999999999999999888643 1355655555433 78
Q ss_pred HHHhCCCCccceEEEECCCCcEE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
+++.|++.++|+++++++++.+.
T Consensus 61 ~~~~~~i~~~P~~~~~~~~~~~~ 83 (102)
T TIGR01126 61 LASRFGVSGFPTIKFFPKGKKPV 83 (102)
T ss_pred HHHhCCCCcCCEEEEecCCCcce
Confidence 89999999999999998777643
No 166
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.19 E-value=1.4e-10 Score=105.04 Aligned_cols=71 Identities=25% Similarity=0.476 Sum_probs=58.7
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.++++++++++. +.+..|+++.. ..+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~----------v~~~~VD~~~~-----------------------~~l 98 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ----------VNVADLDATRA-----------------------LNL 98 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC----------eEEEEecCccc-----------------------HHH
Confidence 478999999999999999999999999988643 55655554433 678
Q ss_pred HHhCCCCccceEEEECCCCcEEecc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
++.|+|.++||+++++ +|+++.+.
T Consensus 99 ~~~~~I~~~PTl~~f~-~G~~v~~~ 122 (224)
T PTZ00443 99 AKRFAIKGYPTLLLFD-KGKMYQYE 122 (224)
T ss_pred HHHcCCCcCCEEEEEE-CCEEEEee
Confidence 9999999999999995 78887654
No 167
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.19 E-value=6.8e-11 Score=93.88 Aligned_cols=69 Identities=19% Similarity=0.338 Sum_probs=56.4
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
++|+ ++|+|||+||++|+.+.|.+.++++.++.. ++.+..|+.|.. ..++++|
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~~~~------------------------~~~~~~~ 67 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL--GINVAKVDVTQE------------------------PGLSGRF 67 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC--CeEEEEEEccCC------------------------HhHHHHc
Confidence 4666 679999999999999999999999987543 377787765433 5688999
Q ss_pred CCCCcCeEEEEcCCCCCCCe
Q 015833 110 DIEGIPCLVVLQPYDDKDDA 129 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i 129 (399)
+|.++|+++++. +|++
T Consensus 68 ~i~~~Pt~~~~~----~g~~ 83 (101)
T cd02994 68 FVTALPTIYHAK----DGVF 83 (101)
T ss_pred CCcccCEEEEeC----CCCE
Confidence 999999999984 7764
No 168
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.19 E-value=5.2e-11 Score=94.54 Aligned_cols=69 Identities=16% Similarity=0.405 Sum_probs=57.2
Q ss_pred EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCC
Q 015833 34 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 113 (399)
Q Consensus 34 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 113 (399)
.++|+||++||++|+.++|.++++++++++..+++.++.|+.+.. ..++++|+|.+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~------------------------~~~~~~~~v~~ 73 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH------------------------RELCSEFQVRG 73 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC------------------------hhhHhhcCCCc
Confidence 599999999999999999999999999986333588887765432 57788999999
Q ss_pred cCeEEEEcCCCCCCCee
Q 015833 114 IPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 114 ~P~~~lid~~~~~G~i~ 130 (399)
+|+++++. +|+.+
T Consensus 74 ~Pt~~~~~----~g~~~ 86 (102)
T cd03005 74 YPTLLLFK----DGEKV 86 (102)
T ss_pred CCEEEEEe----CCCee
Confidence 99999995 66544
No 169
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.19 E-value=8.2e-11 Score=97.31 Aligned_cols=85 Identities=25% Similarity=0.432 Sum_probs=64.0
Q ss_pred CC-CEEEEEEecCCCcccHhhHHHHH---HHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 31 EG-KVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 31 ~g-k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
+| |+++|+||++||++|+.+.|.+. .+.+.+++ ++.++.|++|.+.... .+ .. .......++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~-~~---------~~-~~~~~~~l~ 77 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVT-DF---------DG-EALSEKELA 77 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceee-cc---------CC-CCccHHHHH
Confidence 67 99999999999999999999885 56666653 3888999887653211 11 10 011237899
Q ss_pred hhcCCCCcCeEEEEcCCCCC-CCeeec
Q 015833 107 RKFDIEGIPCLVVLQPYDDK-DDATLH 132 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~~~~~-G~i~~~ 132 (399)
++|+|.++|+++++++ + |+++.+
T Consensus 78 ~~~~v~~~Pt~~~~~~---~gg~~~~~ 101 (125)
T cd02951 78 RKYRVRFTPTVIFLDP---EGGKEIAR 101 (125)
T ss_pred HHcCCccccEEEEEcC---CCCceeEE
Confidence 9999999999999998 8 787755
No 170
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.18 E-value=3.5e-10 Score=101.56 Aligned_cols=115 Identities=17% Similarity=0.363 Sum_probs=93.0
Q ss_pred CeEEecCCCCEEeccccCCCEEEEEEecCCCc-ccHhhHHHHHHHHHHHh-cCCCcEEEEEEecCCC---hHHHHHhHh-
Q 015833 14 RMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELR-NNGSDFEVVFVSSDED---LNAFNNYRA- 87 (399)
Q Consensus 14 ~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~-~~~~~~~ii~Vs~D~~---~~~~~~~~~- 87 (399)
+|+|.|.+|+.+++.+++||+++|+|..++|| .|...+..|.++.+++. ..+.++++++|++|.. .+.+++|..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 79999999999999999999999999999999 99999999999999998 6667899999999843 456667766
Q ss_pred cC--CCcccccCChHHHHHHHhhcCCC---------------CcCeEEEEcCCCCCCCeeec
Q 015833 88 CM--PWLAVPYSDLETKKALNRKFDIE---------------GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 88 ~~--~~~~~~~~d~~~~~~l~~~~~v~---------------~~P~~~lid~~~~~G~i~~~ 132 (399)
.. .|..+.. +.+...++++.|+|. +...++++++ +|++...
T Consensus 129 ~~~~~~~~ltg-~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~---~G~~~~~ 186 (207)
T COG1999 129 NFDPRWIGLTG-TPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDA---DGRFLGT 186 (207)
T ss_pred cCCCCeeeeeC-CHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECC---CCeEEEE
Confidence 22 2555554 244457777777664 4557788888 8888755
No 171
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.18 E-value=2.8e-11 Score=113.20 Aligned_cols=87 Identities=18% Similarity=0.284 Sum_probs=69.4
Q ss_pred CEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHH
Q 015833 23 EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 102 (399)
Q Consensus 23 ~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 102 (399)
+...+++++|+++||+||++||++|+.++|.|++++++++ +.|++|++|..... . +|..+. .
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~~------~-----fp~~~~--d 218 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPLP------G-----FPNARP--D 218 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCccc------c-----CCcccC--C
Confidence 3467888999999999999999999999999999999972 88999999876421 1 221122 2
Q ss_pred HHHHhhcCCCCcCeEEEEcCCCCCCCee
Q 015833 103 KALNRKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 103 ~~l~~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
..+.++|+|.++|+++|+++ +|..+
T Consensus 219 ~~la~~~gV~~vPtl~Lv~~---~~~~v 243 (271)
T TIGR02740 219 AGQAQQLKIRTVPAVFLADP---DPNQF 243 (271)
T ss_pred HHHHHHcCCCcCCeEEEEEC---CCCEE
Confidence 56789999999999999997 66544
No 172
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.18 E-value=1e-09 Score=110.87 Aligned_cols=179 Identities=16% Similarity=0.224 Sum_probs=107.9
Q ss_pred CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCC--CcCeEEEE
Q 015833 43 WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE--GIPCLVVL 120 (399)
Q Consensus 43 wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~--~~P~~~li 120 (399)
....|......+.++++++++. .+.+..+ |......+++.+++. .+|.++++
T Consensus 246 ~~~~~~~~~~~~~~~a~~~~~~--~i~f~~~------------------------d~~~~~~~~~~~~~~~~~~P~~vi~ 299 (462)
T TIGR01130 246 SLDPFEELRNRFLEAAKKFRGK--FVNFAVA------------------------DEEDFGRELEYFGLKAEKFPAVAIQ 299 (462)
T ss_pred CchHHHHHHHHHHHHHHHCCCC--eEEEEEe------------------------cHHHhHHHHHHcCCCccCCceEEEE
Confidence 4455788888899998888641 2555544 333336788889987 69999999
Q ss_pred cCCCCCCCeeeccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCCc---cc-CCCCCceeeccc-c
Q 015833 121 QPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGY---LL-GHPPDEKVPVSS-L 195 (399)
Q Consensus 121 d~~~~~G~i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f---~l-~~~g~~~~~l~~-~ 195 (399)
+. ++..... .. ....+.+.+.++............. ...+.|.- .+ ...|. .+.-.- -
T Consensus 300 ~~---~~~~~y~-----~~-----~~~~~~~~i~~fi~~~~~g~~~~~~---~se~~p~~~~~~v~~l~~~-~f~~~v~~ 362 (462)
T TIGR01130 300 DL---EGNKKYP-----MD-----QEEFSSENLEAFVKDFLDGKLKPYL---KSEPIPEDDEGPVKVLVGK-NFDEIVLD 362 (462)
T ss_pred eC---CcccccC-----CC-----cCCCCHHHHHHHHHHHhcCCCCeee---ccCCCCccCCCccEEeeCc-CHHHHhcc
Confidence 97 6521111 00 0124455555544333221111111 11122221 11 22333 222111 1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.++.++|+||++||++|+.+.|.+.++++.+++. ..++.++.|+++.+ .
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~i~~~~id~~~n------------------------~ 411 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDA-------ESDVVIAKMDATAN------------------------D 411 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcC-------CCcEEEEEEECCCC------------------------c
Confidence 3789999999999999999999999999998752 12467777766533 1
Q ss_pred HHHhCCCCccceEEEECCCCc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGK 296 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~ 296 (399)
+.. +++.++|+++++.++++
T Consensus 412 ~~~-~~i~~~Pt~~~~~~~~~ 431 (462)
T TIGR01130 412 VPP-FEVEGFPTIKFVPAGKK 431 (462)
T ss_pred cCC-CCccccCEEEEEeCCCC
Confidence 223 89999999999955544
No 173
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.18 E-value=2.3e-10 Score=90.28 Aligned_cols=70 Identities=26% Similarity=0.566 Sum_probs=59.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.+.+.++.+++.+ ++.++.|.++.+ ..+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~ 60 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG----------KVKFVKLNVDEN-----------------------PDI 60 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC----------CeEEEEEECCCC-----------------------HHH
Confidence 46899999999999999999999999888753 377888877654 578
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.|++.++|+++++ ++|+++.+
T Consensus 61 ~~~~~v~~~P~~~~~-~~g~~~~~ 83 (101)
T TIGR01068 61 AAKYGIRSIPTLLLF-KNGKEVDR 83 (101)
T ss_pred HHHcCCCcCCEEEEE-eCCcEeee
Confidence 899999999999999 78887765
No 174
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.18 E-value=1e-10 Score=94.40 Aligned_cols=67 Identities=15% Similarity=0.425 Sum_probs=56.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh-hc
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR-KF 109 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~ 109 (399)
.||+++|.||++||++|+.+.|.+.++++.+++.+ +.++.|+.|.+ ...+++ .|
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~--~~~~~vd~d~~-----------------------~~~~~~~~~ 74 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVAKFNADGE-----------------------QREFAKEEL 74 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECCcc-----------------------chhhHHhhc
Confidence 57999999999999999999999999999998543 88888877642 034554 59
Q ss_pred CCCCcCeEEEEcC
Q 015833 110 DIEGIPCLVVLQP 122 (399)
Q Consensus 110 ~v~~~P~~~lid~ 122 (399)
++.++|+++++++
T Consensus 75 ~v~~~Pti~~f~~ 87 (109)
T cd02993 75 QLKSFPTILFFPK 87 (109)
T ss_pred CCCcCCEEEEEcC
Confidence 9999999999986
No 175
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.18 E-value=1e-10 Score=97.75 Aligned_cols=68 Identities=18% Similarity=0.335 Sum_probs=58.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++|+|+|||+||+||+.+.|.|.++++++++. +.++.|++|+. ++++..|+
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~------------------------~dla~~y~ 74 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEV------------------------PDFNTMYE 74 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCC------------------------HHHHHHcC
Confidence 5789999999999999999999999999998654 77788877754 88999999
Q ss_pred CCCcCeEEEEcCCCCCCC
Q 015833 111 IEGIPCLVVLQPYDDKDD 128 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~ 128 (399)
|.+.|+++++-+ +|.
T Consensus 75 I~~~~t~~~ffk---~g~ 89 (142)
T PLN00410 75 LYDPCTVMFFFR---NKH 89 (142)
T ss_pred ccCCCcEEEEEE---CCe
Confidence 998887775555 776
No 176
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.5e-10 Score=95.06 Aligned_cols=122 Identities=18% Similarity=0.228 Sum_probs=97.5
Q ss_pred hcCCCCccc----CCCCCceeeccccCCcEEEEEEec-CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 174 TNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 174 g~~~p~f~l----~~~g~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
..++|+|.- +..-+ .++|++++||+|++.||. .+...|..++-.+...+.+|++. +-+|+++|+|
T Consensus 7 ~~p~p~fk~~aVVdG~f~-e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~---------n~eVig~S~D 76 (196)
T KOG0852|consen 7 FKPAPDFKGTAVVDGEFK-EIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL---------NTEVLGISTD 76 (196)
T ss_pred CCCCCCcceeEEEcCcce-EEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc---------CCeEEEEecc
Confidence 345577753 55556 899999999999999994 58889999999999999999976 8999999999
Q ss_pred C--CHHHHHHHHhcCCC---cccccCCchhHHHHHhCCC----C--ccceEEEECCCCcEEecccchh
Q 015833 249 R--DQTSFESYFGTMPW---LALPFGDPTIKELTKYFDV----Q--GIPCLVIIGPEGKTVTKQGRNL 305 (399)
Q Consensus 249 ~--~~~~~~~~~~~~~~---~~~p~~~d~~~~~~~~~~v----~--~~P~~~lid~~G~i~~~~~~~~ 305 (399)
+ +.-+|.+.-++.+. +++|+..|.+.++++.||| . .+..++|||++|.++.....++
T Consensus 77 S~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDl 144 (196)
T KOG0852|consen 77 SVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDL 144 (196)
T ss_pred chhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeeccc
Confidence 6 34456655555444 5599999999999999998 3 4557999999999887544433
No 177
>PTZ00051 thioredoxin; Provisional
Probab=99.17 E-value=1.1e-10 Score=91.98 Aligned_cols=71 Identities=21% Similarity=0.388 Sum_probs=58.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.|.++++++. ++.++.|+.+.. ..+
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-----------~~~~~~vd~~~~-----------------------~~~ 63 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYT-----------KMVFVKVDVDEL-----------------------SEV 63 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-----------CcEEEEEECcch-----------------------HHH
Confidence 5789999999999999999999999888653 456666665532 678
Q ss_pred HHhCCCCccceEEEECCCCcEEeccc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
++.|++.++|+++++ ++|+++.+..
T Consensus 64 ~~~~~v~~~Pt~~~~-~~g~~~~~~~ 88 (98)
T PTZ00051 64 AEKENITSMPTFKVF-KNGSVVDTLL 88 (98)
T ss_pred HHHCCCceeeEEEEE-eCCeEEEEEe
Confidence 999999999999888 8999987743
No 178
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.17 E-value=8.8e-11 Score=94.49 Aligned_cols=67 Identities=31% Similarity=0.506 Sum_probs=57.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.|++++|+||++||++|+.+.|.+.++++.+.+. +.++.|+.|.+. ...++++|+
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~----------------------~~~~~~~~~ 71 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDK----------------------NKPLCGKYG 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCccc----------------------cHHHHHHcC
Confidence 4789999999999999999999999999998643 788888776421 267889999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|+++++++
T Consensus 72 i~~~Pt~~~~~~ 83 (109)
T cd03002 72 VQGFPTLKVFRP 83 (109)
T ss_pred CCcCCEEEEEeC
Confidence 999999999996
No 179
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.17 E-value=1.7e-10 Score=91.89 Aligned_cols=76 Identities=25% Similarity=0.448 Sum_probs=60.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++++|+||++||++|+.+.|.+.++.+.+.+. ..+.++.|.++.+. ...
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~~~---------------------~~~ 66 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED--------GKGVLAAVDCTKPE---------------------HDA 66 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC--------CceEEEEEECCCCc---------------------cHH
Confidence 3568999999999999999999999999988743 24556666655421 267
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+++.|+++++|+++++ ++|+++.+.
T Consensus 67 ~~~~~~i~~~Pt~~~~-~~g~~~~~~ 91 (104)
T cd02997 67 LKEEYNVKGFPTFKYF-ENGKFVEKY 91 (104)
T ss_pred HHHhCCCccccEEEEE-eCCCeeEEe
Confidence 8999999999999888 688876553
No 180
>PRK09381 trxA thioredoxin; Provisional
Probab=99.17 E-value=1.3e-10 Score=93.73 Aligned_cols=71 Identities=21% Similarity=0.477 Sum_probs=60.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.|+++++++.+. +.++.|+.|.. ..++++|+
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~ 72 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN------------------------PGTAPKYG 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCC------------------------hhHHHhCC
Confidence 3789999999999999999999999999998653 78888877643 56678899
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+..+|+++++. +|+++..
T Consensus 73 v~~~Pt~~~~~----~G~~~~~ 90 (109)
T PRK09381 73 IRGIPTLLLFK----NGEVAAT 90 (109)
T ss_pred CCcCCEEEEEe----CCeEEEE
Confidence 99999999995 7887654
No 181
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.16 E-value=1.9e-10 Score=91.82 Aligned_cols=75 Identities=23% Similarity=0.405 Sum_probs=59.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
+||+++|+||++||++|+.+.+.+ .++++.+++ ++.++.|+.+.+ +. ....+++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~-------------------~~-~~~~~~~ 66 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKN-------------------DP-EITALLK 66 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCC-------------------CH-HHHHHHH
Confidence 589999999999999999999887 577777765 388888877543 11 1278899
Q ss_pred hcCCCCcCeEEEEcCCCCCCCee
Q 015833 108 KFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 108 ~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
+|++.++|+++++++ .+|+.+
T Consensus 67 ~~~i~~~Pti~~~~~--~~g~~~ 87 (104)
T cd02953 67 RFGVFGPPTYLFYGP--GGEPEP 87 (104)
T ss_pred HcCCCCCCEEEEECC--CCCCCC
Confidence 999999999999984 245554
No 182
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=6.9e-11 Score=108.32 Aligned_cols=71 Identities=20% Similarity=0.406 Sum_probs=63.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.-+||+|+||+|||++|+.++|.|.++..+++.. |.+..|++|.. ..++.+||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~------------------------p~vAaqfg 94 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAE------------------------PMVAAQFG 94 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcc------------------------hhHHHHhC
Confidence 4579999999999999999999999999999876 99999988755 88999999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+++|++|++- +|+.+..
T Consensus 95 iqsIPtV~af~----dGqpVdg 112 (304)
T COG3118 95 VQSIPTVYAFK----DGQPVDG 112 (304)
T ss_pred cCcCCeEEEee----CCcCccc
Confidence 99999999997 8887743
No 183
>PRK10996 thioredoxin 2; Provisional
Probab=99.15 E-value=1.8e-10 Score=97.08 Aligned_cols=71 Identities=24% Similarity=0.505 Sum_probs=60.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++|+++|+||++||++|+.+.|.|.++++++.+. +.++.|+.|.. ..++++|+
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~ 103 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAE------------------------RELSARFR 103 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCC------------------------HHHHHhcC
Confidence 5899999999999999999999999999987643 77777765432 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|++++++ +|+++..
T Consensus 104 V~~~Ptlii~~----~G~~v~~ 121 (139)
T PRK10996 104 IRSIPTIMIFK----NGQVVDM 121 (139)
T ss_pred CCccCEEEEEE----CCEEEEE
Confidence 99999999885 7887654
No 184
>PTZ00062 glutaredoxin; Provisional
Probab=99.12 E-value=5.6e-10 Score=99.40 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=50.0
Q ss_pred CEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCC
Q 015833 33 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 112 (399)
Q Consensus 33 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 112 (399)
..++++|||+||++|+.+.|.|.++++++. ++.++.|+. + |+|.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~----~~~F~~V~~------------------------d--------~~V~ 61 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP----SLEFYVVNL------------------------A--------DANN 61 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC----CcEEEEEcc------------------------c--------cCcc
Confidence 467899999999999999999999999984 366666622 1 9999
Q ss_pred CcCeEEEEcCCCCCCCeeec
Q 015833 113 GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 113 ~~P~~~lid~~~~~G~i~~~ 132 (399)
++|+++++. +|+.+.+
T Consensus 62 ~vPtfv~~~----~g~~i~r 77 (204)
T PTZ00062 62 EYGVFEFYQ----NSQLINS 77 (204)
T ss_pred cceEEEEEE----CCEEEee
Confidence 999999997 7877765
No 185
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.11 E-value=1.1e-10 Score=105.85 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=55.7
Q ss_pred CCcEEEEEEec---CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 196 VGKTVGLYFSA---RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 196 ~gk~vll~F~a---~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
++...++.|++ +||++|+.+.|.++++.+++. ++++..+++|.+.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-----------~~~i~~v~vd~~~--------------------- 65 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-----------KLKLEIYDFDTPE--------------------- 65 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-----------CceEEEEecCCcc---------------------
Confidence 34445666777 999999999999999988874 3567777777543
Q ss_pred hHHHHHhCCCCccceEEEECCCCcEE
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
..++++.|+|.++||++++ ++|+.+
T Consensus 66 ~~~l~~~~~V~~~Pt~~~f-~~g~~~ 90 (215)
T TIGR02187 66 DKEEAEKYGVERVPTTIIL-EEGKDG 90 (215)
T ss_pred cHHHHHHcCCCccCEEEEE-eCCeee
Confidence 3889999999999999999 567765
No 186
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.10 E-value=4.5e-10 Score=91.32 Aligned_cols=69 Identities=25% Similarity=0.411 Sum_probs=56.0
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++++|+||++||++|+.+.|.+.++++.+++....+.+..|+.+.+ ....++++|++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~----------------------~~~~~~~~~~i 76 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE----------------------ENVALCRDFGV 76 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch----------------------hhHHHHHhCCC
Confidence 47999999999999999999999999999976432466666644321 12678899999
Q ss_pred CCcCeEEEEcC
Q 015833 112 EGIPCLVVLQP 122 (399)
Q Consensus 112 ~~~P~~~lid~ 122 (399)
.++|+++++.+
T Consensus 77 ~~~Pt~~lf~~ 87 (114)
T cd02992 77 TGYPTLRYFPP 87 (114)
T ss_pred CCCCEEEEECC
Confidence 99999999985
No 187
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.10 E-value=7.4e-10 Score=87.99 Aligned_cols=65 Identities=23% Similarity=0.455 Sum_probs=55.1
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.+.++++++.+ .+.++.+.+|.. ..+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~----------~~~~~~id~~~~-----------------------~~~ 64 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG----------IVKVGAVDADVH-----------------------QSL 64 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC----------CceEEEEECcch-----------------------HHH
Confidence 46799999999999999999999999988864 367777776643 678
Q ss_pred HHhCCCCccceEEEECCC
Q 015833 277 TKYFDVQGIPCLVIIGPE 294 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~ 294 (399)
++.|+|+++|++++++++
T Consensus 65 ~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 65 AQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred HHHCCCCccCEEEEECCC
Confidence 999999999999999544
No 188
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.10 E-value=4.7e-10 Score=88.47 Aligned_cols=71 Identities=17% Similarity=0.367 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||+.|+.+.|.+.++++++.+. +.++.|+.|.. .++.++++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~------------------------~~l~~~~~ 64 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDED------------------------QEIAEAAG 64 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCC------------------------HHHHHHCC
Confidence 5789999999999999999999999999998643 77787766533 67889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|.++|++++++ +|+++..
T Consensus 65 v~~vPt~~i~~----~g~~v~~ 82 (97)
T cd02949 65 IMGTPTVQFFK----DKELVKE 82 (97)
T ss_pred CeeccEEEEEE----CCeEEEE
Confidence 99999999996 7777644
No 189
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.10 E-value=3.6e-10 Score=90.28 Aligned_cols=71 Identities=17% Similarity=0.320 Sum_probs=61.6
Q ss_pred CCCEEEEEEecCC--CcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhh
Q 015833 31 EGKVTALYFSANW--YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 108 (399)
Q Consensus 31 ~gk~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 108 (399)
.|..++|+||++| ||+|+.+.|.|.++++++.+. +.++.|+.|.. .+++.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~------------------------~~la~~ 78 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADE------------------------QALAAR 78 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCC------------------------HHHHHH
Confidence 5678899999997 999999999999999998754 77778876644 789999
Q ss_pred cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 109 FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 109 ~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+|.++||++++. +|+++..
T Consensus 79 f~V~sIPTli~fk----dGk~v~~ 98 (111)
T cd02965 79 FGVLRTPALLFFR----DGRYVGV 98 (111)
T ss_pred cCCCcCCEEEEEE----CCEEEEE
Confidence 9999999999998 7888765
No 190
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.3e-10 Score=101.52 Aligned_cols=92 Identities=22% Similarity=0.395 Sum_probs=71.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
-+|.|+|+|+|+||+||+...|.+..+.++|++ ..++-|.+| + -+.
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-----------aVFlkVdVd--~---------------------c~~ 65 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-----------AVFLKVDVD--E---------------------CRG 65 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhCcc-----------cEEEEEeHH--H---------------------hhc
Confidence 368999999999999999999999999999963 345555554 2 267
Q ss_pred HHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhccCCC
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPR 337 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~ 337 (399)
.+..+||+++||++++ .+|+-+.+ ..|+++ ..|+.++.+.+.....
T Consensus 66 taa~~gV~amPTFiff-~ng~kid~-------~qGAd~--------~gLe~kv~~~~stsaa 111 (288)
T KOG0908|consen 66 TAATNGVNAMPTFIFF-RNGVKIDQ-------IQGADA--------SGLEEKVAKYASTSAA 111 (288)
T ss_pred hhhhcCcccCceEEEE-ecCeEeee-------ecCCCH--------HHHHHHHHHHhccCcc
Confidence 7888999999999999 88877766 445444 6677777776654443
No 191
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.09 E-value=5.2e-10 Score=90.78 Aligned_cols=70 Identities=11% Similarity=0.173 Sum_probs=59.7
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.+.|.|.++++++. ++.++.|+.|+. ..++++|+
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~----~i~f~~Vd~~~~------------------------~~l~~~~~ 72 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL----ETKFIKVNAEKA------------------------PFLVEKLN 72 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC----CCEEEEEEcccC------------------------HHHHHHCC
Confidence 46899999999999999999999999998874 267777766533 77899999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|..+|+++++. +|+.+.+
T Consensus 73 v~~vPt~l~fk----~G~~v~~ 90 (113)
T cd02989 73 IKVLPTVILFK----NGKTVDR 90 (113)
T ss_pred CccCCEEEEEE----CCEEEEE
Confidence 99999999998 7877754
No 192
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.09 E-value=2.6e-10 Score=92.77 Aligned_cols=79 Identities=16% Similarity=0.330 Sum_probs=62.3
Q ss_pred CCcEEEEEEec-------CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 015833 196 VGKTVGLYFSA-------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 268 (399)
Q Consensus 196 ~gk~vll~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 268 (399)
+|++|+|+||| +||++|+.+.|.+.++.+++++ ++.++.|.+|... .
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~----------~v~fv~Vdvd~~~----------------~ 73 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE----------DCVFIYCDVGDRP----------------Y 73 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC----------CCEEEEEEcCCcc----------------c
Confidence 47899999999 9999999999999999988863 3678888887542 1
Q ss_pred CCchhHHHHHhCCCC-ccceEEEECCCCcEEec
Q 015833 269 GDPTIKELTKYFDVQ-GIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 269 ~~d~~~~~~~~~~v~-~~P~~~lid~~G~i~~~ 300 (399)
..+....+...|+|. ++||+++++..++++..
T Consensus 74 w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 74 WRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred ccCcchhhHhccCcccCCCEEEEEcCCceecch
Confidence 112247888999998 99999999655555543
No 193
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.09 E-value=1.9e-09 Score=96.76 Aligned_cols=115 Identities=20% Similarity=0.381 Sum_probs=93.7
Q ss_pred Cccc-CCCCCceeeccccCCcEEEEEEecCCCh-hhhhhHHHHHHHHHHHH-hhhhhcCCCCCCEEEEEEecCC---CHH
Q 015833 179 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIK-QNLVEKGDALEDFEVVFVSTDR---DQT 252 (399)
Q Consensus 179 ~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~vv~is~d~---~~~ 252 (399)
+|++ +.+|+ .+++.+++||+++|+|..+.|| .|...+..|.++.++.. .. ..++++++|++|. +++
T Consensus 49 ~f~l~d~~G~-~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~-------~~~v~vv~itvDPerDtp~ 120 (207)
T COG1999 49 DFELTDQDGK-PFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGE-------GDDVQVVFITVDPERDTPE 120 (207)
T ss_pred ceeeecCCCC-EeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhcccc-------CCCEEEEEEEECCCCCCHH
Confidence 7999 99999 9999999999999999999998 79999999999999887 33 5689999999985 456
Q ss_pred HHHHHHh-c--CCCcccccCCchhHHHHHhCCCCc---------------cceEEEECCCCcEEecc
Q 015833 253 SFESYFG-T--MPWLALPFGDPTIKELTKYFDVQG---------------IPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 253 ~~~~~~~-~--~~~~~~p~~~d~~~~~~~~~~v~~---------------~P~~~lid~~G~i~~~~ 301 (399)
..++|.. . -.|..+.-..+...++++.|+|.. ...++++|++|+++...
T Consensus 121 ~lk~Y~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~ 187 (207)
T COG1999 121 VLKKYAELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTY 187 (207)
T ss_pred HHHHHhcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEe
Confidence 6777777 2 125555555667788899888753 22579999999998774
No 194
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.08 E-value=5.3e-10 Score=87.91 Aligned_cols=70 Identities=21% Similarity=0.436 Sum_probs=58.0
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++++|+||++||++|+.+.|.|.++++++. .++.++.|+.+. ..+++++|++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~---~~i~~~~vd~~~------------------------~~~~~~~~~i 66 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF---PSVLFLSIEAEE------------------------LPEISEKFEI 66 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC---CceEEEEEcccc------------------------CHHHHHhcCC
Confidence 6999999999999999999999999999972 247777774432 2678899999
Q ss_pred CCcCeEEEEcCCCCCCCeeec
Q 015833 112 EGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~~ 132 (399)
.++|+++++. +|+++..
T Consensus 67 ~~~Pt~~~~~----~g~~~~~ 83 (97)
T cd02984 67 TAVPTFVFFR----NGTIVDR 83 (97)
T ss_pred ccccEEEEEE----CCEEEEE
Confidence 9999999996 7877654
No 195
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.08 E-value=3.9e-10 Score=91.21 Aligned_cols=96 Identities=21% Similarity=0.346 Sum_probs=65.0
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
-+||+++|.||.+|||+|+.+.+.+....+....-..++.++.++++...+.........+. .. -.....++.+.|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~l~~~~ 78 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KN-VRLSNKELAQRY 78 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SS-CHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hh-hhHHHHHHHHHc
Confidence 36899999999999999999999888654432221124888999887766544444443221 11 122347899999
Q ss_pred CCCCcCeEEEEcCCCCCCCeeec
Q 015833 110 DIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+|.++|+++++|+ +|+++..
T Consensus 79 ~v~gtPt~~~~d~---~G~~v~~ 98 (112)
T PF13098_consen 79 GVNGTPTIVFLDK---DGKIVYR 98 (112)
T ss_dssp T--SSSEEEECTT---TSCEEEE
T ss_pred CCCccCEEEEEcC---CCCEEEE
Confidence 9999999999998 9997754
No 196
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.08 E-value=5.7e-10 Score=88.75 Aligned_cols=73 Identities=18% Similarity=0.389 Sum_probs=58.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|.||++||++|+.+.|.++++++.+++.+ .+.++.|+.+.+ ....++++|+
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~----------------------~~~~~~~~~~ 72 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKP----------------------EHDALKEEYN 72 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCC----------------------ccHHHHHhCC
Confidence 57799999999999999999999999999997532 366666655431 1267889999
Q ss_pred CCCcCeEEEEcCCCCCCCee
Q 015833 111 IEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~ 130 (399)
|.++|+++++. +|+++
T Consensus 73 i~~~Pt~~~~~----~g~~~ 88 (104)
T cd02997 73 VKGFPTFKYFE----NGKFV 88 (104)
T ss_pred CccccEEEEEe----CCCee
Confidence 99999988886 67654
No 197
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=6.3e-10 Score=96.14 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=96.5
Q ss_pred cccccccCCeEEecC-CCC---EEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC--
Q 015833 6 WYVQQLRRRMTSTKE-IGE---EVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED-- 78 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~-~G~---~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~-- 78 (399)
..+|+.+|+|++... .|. +++++++.||+++++|| +..-+.|.++...+++.+++|++.| ++|++||+|..
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~fs 80 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSVFS 80 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcHHH
Confidence 457999999999977 774 89999998899999999 8889999999999999999999987 99999999953
Q ss_pred hHHHHHhHhcCC-C--cccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeec
Q 015833 79 LNAFNNYRACMP-W--LAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 79 ~~~~~~~~~~~~-~--~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~ 132 (399)
..+|.+...+.. . ..+|. -.+...++++.||+. ..-.+++||+ +|.+.+.
T Consensus 81 H~aW~~~~~~~~gi~~i~~Pm-iaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp---~g~ir~~ 139 (194)
T COG0450 81 HKAWKATIREAGGIGKIKFPM-IADPKGEIARAYGVLHPEEGLALRGTFIIDP---DGVIRHI 139 (194)
T ss_pred HHHHHhcHHhcCCccceecce-EEcCchhHHHHcCCcccCCCcceeEEEEECC---CCeEEEE
Confidence 445555544333 2 22332 223348999999985 3568899999 9988755
No 198
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.07 E-value=6.5e-10 Score=97.24 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=64.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++|+|+||++||++|+.+.|.|.+++++|. .+.++-|.+| . ..+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-----------~vkF~kVd~d--~----------------------~~l 127 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-----------AVKFCKIRAS--A----------------------TGA 127 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC-----------CeEEEEEecc--c----------------------hhh
Confidence 3599999999999999999999999998874 3555555544 2 257
Q ss_pred HHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHH
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFL 324 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 324 (399)
+..|+|.++||++++ ++|+++.+..+.. ..|.. .|+...++.+
T Consensus 128 ~~~f~v~~vPTllly-k~G~~v~~~vG~~--~~~g~--~f~~~~le~~ 170 (175)
T cd02987 128 SDEFDTDALPALLVY-KGGELIGNFVRVT--EDLGE--DFDAEDLESF 170 (175)
T ss_pred HHhCCCCCCCEEEEE-ECCEEEEEEechH--HhcCC--CCCHHHHHHH
Confidence 888999999999999 8999997754432 22222 3555555443
No 199
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.07 E-value=6.2e-10 Score=88.22 Aligned_cols=70 Identities=26% Similarity=0.632 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.|.++++.+.+ ++.++.|+.+.. ..++++|+
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~------------------------~~l~~~~~ 68 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDEN------------------------KELCKKYG 68 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTS------------------------HHHHHHTT
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhcc------------------------chhhhccC
Confidence 379999999999999999999999999999876 388887765433 78999999
Q ss_pred CCCcCeEEEEcCCCCCCCeee
Q 015833 111 IEGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~ 131 (399)
|.++|+++++. +|+...
T Consensus 69 v~~~Pt~~~~~----~g~~~~ 85 (103)
T PF00085_consen 69 VKSVPTIIFFK----NGKEVK 85 (103)
T ss_dssp CSSSSEEEEEE----TTEEEE
T ss_pred CCCCCEEEEEE----CCcEEE
Confidence 99999999998 666554
No 200
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.07 E-value=6e-10 Score=88.67 Aligned_cols=74 Identities=26% Similarity=0.447 Sum_probs=59.0
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|.||++||++|+.+.|.+.+++++++.. .++.++.|+++.. ...+
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~~----------------------~~~~ 67 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE--------DDVVIAKVDADEA----------------------NKDL 67 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC--------CCEEEEEEECCCc----------------------chhh
Confidence 568999999999999999999999999988632 2466666666541 1678
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.|+|.++|++++++++|+....
T Consensus 68 ~~~~~i~~~P~~~~~~~~~~~~~~ 91 (105)
T cd02998 68 AKKYGVSGFPTLKFFPKGSTEPVK 91 (105)
T ss_pred HHhCCCCCcCEEEEEeCCCCCccc
Confidence 999999999999999777654433
No 201
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.06 E-value=3.2e-10 Score=92.55 Aligned_cols=76 Identities=21% Similarity=0.400 Sum_probs=55.4
Q ss_pred cccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 28 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
+..++|+|+|+|||+||++|+.+.|.+.+..+..... ..++.|++|.+. ..+.+
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~-----------------------~~~~~ 68 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDE-----------------------EPKDE 68 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCC-----------------------Cchhh
Confidence 4457899999999999999999999999977765432 234445554331 11224
Q ss_pred hcCCCC--cCeEEEEcCCCCCCCeeec
Q 015833 108 KFDIEG--IPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 108 ~~~v~~--~P~~~lid~~~~~G~i~~~ 132 (399)
.|++.+ +|+++++++ +|+++.+
T Consensus 69 ~~~~~g~~vPt~~f~~~---~Gk~~~~ 92 (117)
T cd02959 69 EFSPDGGYIPRILFLDP---SGDVHPE 92 (117)
T ss_pred hcccCCCccceEEEECC---CCCCchh
Confidence 677765 999999999 9988754
No 202
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.06 E-value=2.8e-09 Score=87.58 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=56.7
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 271 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 271 (399)
-.+|+|+|+|+++||++|+.+.+.. .++.+.+.+ ++.+|.|..+...+..+.+
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~----------~fv~VkvD~~~~~~~~~~~-------------- 68 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE----------NFVPIKVDREERPDVDKIY-------------- 68 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC----------CEEEEEEeCCcCcHHHHHH--------------
Confidence 3579999999999999999887632 234444432 4666666655432211111
Q ss_pred hhHHHHHhCCCCccceEEEECCCCcEEecccc
Q 015833 272 TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 272 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
.......|++.++|+++++|++|++++..++
T Consensus 69 -~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~~~ 99 (124)
T cd02955 69 -MNAAQAMTGQGGWPLNVFLTPDLKPFFGGTY 99 (124)
T ss_pred -HHHHHHhcCCCCCCEEEEECCCCCEEeeeee
Confidence 1223336799999999999999999987643
No 203
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.06 E-value=2.9e-10 Score=92.48 Aligned_cols=81 Identities=16% Similarity=0.391 Sum_probs=63.3
Q ss_pred cCCCEEEEEEec-------CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHH
Q 015833 30 LEGKVTALYFSA-------NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 102 (399)
Q Consensus 30 ~~gk~vlv~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 102 (399)
.+|++++|+||| +||++|+.+.|.+.+++++++++ +.++.|++|+... | .+. .
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~~----------w-----~d~--~ 78 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRPY----------W-----RDP--N 78 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCccc----------c-----cCc--c
Confidence 358999999999 99999999999999999998633 7788888875421 0 011 2
Q ss_pred HHHHhhcCCC-CcCeEEEEcCCCCCCCeeecc
Q 015833 103 KALNRKFDIE-GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 103 ~~l~~~~~v~-~~P~~~lid~~~~~G~i~~~~ 133 (399)
..+...|+|. ++||+++++. .++++..+
T Consensus 79 ~~~~~~~~I~~~iPT~~~~~~---~~~l~~~~ 107 (119)
T cd02952 79 NPFRTDPKLTTGVPTLLRWKT---PQRLVEDE 107 (119)
T ss_pred hhhHhccCcccCCCEEEEEcC---Cceecchh
Confidence 6788899998 9999999986 55655443
No 204
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.06 E-value=4.5e-10 Score=88.93 Aligned_cols=70 Identities=21% Similarity=0.408 Sum_probs=58.9
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|.||++||++|+.+.+.|+++++.++..+ ++.++.++.|. ...++++|+
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~------------------------~~~~~~~~~ 66 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATA------------------------EKDLASRFG 66 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccc------------------------hHHHHHhCC
Confidence 78999999999999999999999999999987643 47777665432 278889999
Q ss_pred CCCcCeEEEEcCCCCCCC
Q 015833 111 IEGIPCLVVLQPYDDKDD 128 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~ 128 (399)
|.++|++++++. ++.
T Consensus 67 i~~~P~~~~~~~---~~~ 81 (102)
T TIGR01126 67 VSGFPTIKFFPK---GKK 81 (102)
T ss_pred CCcCCEEEEecC---CCc
Confidence 999999999997 554
No 205
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.8e-09 Score=105.40 Aligned_cols=90 Identities=27% Similarity=0.458 Sum_probs=63.7
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
.+|-|||.||||||+||+++.|.+++|+++|++. -.||...+|.+.. +
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~----------~~vviAKmDaTaN----------------------d 430 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD----------ENVVIAKMDATAN----------------------D 430 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCC----------CCcEEEEeccccc----------------------c
Confidence 3688999999999999999999999999999864 2466677776532 1
Q ss_pred HHHhCCCCccceEEEECCCC--cEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhc
Q 015833 276 LTKYFDVQGIPCLVIIGPEG--KTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK 333 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G--~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~ 333 (399)
+ ....+.++||++++-.++ +++..+| .+.++.|.+.+.+...
T Consensus 431 ~-~~~~~~~fPTI~~~pag~k~~pv~y~g---------------~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 431 V-PSLKVDGFPTILFFPAGHKSNPVIYNG---------------DRTLEDLKKFIKKSAT 474 (493)
T ss_pred C-ccccccccceEEEecCCCCCCCcccCC---------------CcchHHHHhhhccCCC
Confidence 1 123567799999994333 2444433 3336777777765443
No 206
>PTZ00051 thioredoxin; Provisional
Probab=99.05 E-value=7.2e-10 Score=87.36 Aligned_cols=70 Identities=20% Similarity=0.368 Sum_probs=57.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.|.++++.+. ++.++.|+.+. ...++++|+
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~------------------------~~~~~~~~~ 68 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDE------------------------LSEVAEKEN 68 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcc------------------------hHHHHHHCC
Confidence 47899999999999999999999999998753 26666665432 167889999
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++. +|+++..
T Consensus 69 v~~~Pt~~~~~----~g~~~~~ 86 (98)
T PTZ00051 69 ITSMPTFKVFK----NGSVVDT 86 (98)
T ss_pred CceeeEEEEEe----CCeEEEE
Confidence 99999988885 8888755
No 207
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.05 E-value=6.8e-10 Score=90.57 Aligned_cols=71 Identities=11% Similarity=0.212 Sum_probs=58.4
Q ss_pred CCEEEEEEecCCCcc--cH--hhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 32 GKVTALYFSANWYPP--CG--NFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 32 gk~vlv~F~a~wC~~--C~--~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
..+++++||++||++ |+ .+.|.+.+++.++-..+ ++.++.|++|.. ..+++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~------------------------~~La~ 81 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKD------------------------AKVAK 81 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCC------------------------HHHHH
Confidence 459999999999987 99 77888999888873221 388888877644 88999
Q ss_pred hcCCCCcCeEEEEcCCCCCCCeee
Q 015833 108 KFDIEGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 108 ~~~v~~~P~~~lid~~~~~G~i~~ 131 (399)
+|+|+++||++++. +|+++.
T Consensus 82 ~~~I~~iPTl~lfk----~G~~v~ 101 (120)
T cd03065 82 KLGLDEEDSIYVFK----DDEVIE 101 (120)
T ss_pred HcCCccccEEEEEE----CCEEEE
Confidence 99999999999997 787664
No 208
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.04 E-value=6.4e-10 Score=90.32 Aligned_cols=68 Identities=19% Similarity=0.313 Sum_probs=56.6
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++++|+||++||++|+.+.|.|+++++++.+ +.++.|+. +.. .++++|+|
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~------------------------~~~-~l~~~~~i 74 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINA------------------------EKA-FLVNYLDI 74 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEc------------------------hhh-HHHHhcCC
Confidence 48999999999999999999999999999742 56666633 222 78899999
Q ss_pred CCcCeEEEEcCCCCCCCeeec
Q 015833 112 EGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~~ 132 (399)
.++|+++++. +|+.+.+
T Consensus 75 ~~~Pt~~~f~----~G~~v~~ 91 (113)
T cd02957 75 KVLPTLLVYK----NGELIDN 91 (113)
T ss_pred CcCCEEEEEE----CCEEEEE
Confidence 9999999998 7887755
No 209
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.04 E-value=1.5e-09 Score=89.18 Aligned_cols=79 Identities=18% Similarity=0.442 Sum_probs=57.6
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC-chhHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD-PTIKE 275 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~-d~~~~ 275 (399)
|+.++|+|+++|||+|+.+.|.|.++.++. +..+..|++|.+.. ..... +.-.+
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~------------~~~~y~vdvd~~~~-------------~~~~~~~~~~~ 77 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQT------------KAPIYYIDSENNGS-------------FEMSSLNDLTA 77 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHhc------------CCcEEEEECCCccC-------------cCcccHHHHHH
Confidence 567999999999999999999999998872 35699999985420 00000 01134
Q ss_pred HHHhC----CCCccceEEEECCCCcEEecc
Q 015833 276 LTKYF----DVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~----~v~~~P~~~lid~~G~i~~~~ 301 (399)
+.+.| ++.++||++++ ++|+.+.+.
T Consensus 78 ~~~~~~i~~~i~~~PT~v~~-k~Gk~v~~~ 106 (122)
T TIGR01295 78 FRSRFGIPTSFMGTPTFVHI-TDGKQVSVR 106 (122)
T ss_pred HHHHcCCcccCCCCCEEEEE-eCCeEEEEE
Confidence 44554 46679999999 999999874
No 210
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.04 E-value=4.3e-09 Score=94.08 Aligned_cols=126 Identities=22% Similarity=0.326 Sum_probs=98.3
Q ss_pred HhhhcCC--CCccc-CCCCCceeeccccCCcEEEEEEecCCCh-hhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 171 NLLTNHD--RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 171 ~~~g~~~--p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
..+|.++ -+|+| +.+|+ .++-.++.||++|+||..+.|| .|..++..|.++.+++.++. +....-|+|+
T Consensus 111 ~~~gk~~iGGpF~L~d~~Gk-~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~------~~~~~PlFIs 183 (280)
T KOG2792|consen 111 RTAGKPAIGGPFSLVDHDGK-RVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKP------GLPPVPLFIS 183 (280)
T ss_pred hhcCCCccCCceEEEecCCC-eecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccC------CCCccceEEE
Confidence 3345444 46999 99999 9999999999999999999999 79999999999999887651 2223368999
Q ss_pred cCC---CHHHHHHHHhcCC--CcccccCCchhHHHHHhCCCCcc--c-------------eEEEECCCCcEEecccc
Q 015833 247 TDR---DQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQGI--P-------------CLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 247 ~d~---~~~~~~~~~~~~~--~~~~p~~~d~~~~~~~~~~v~~~--P-------------~~~lid~~G~i~~~~~~ 303 (399)
+|. +.+.+++|+++.. .+.+.-..+....+++.|.|--- | .++||||+|+.+...|.
T Consensus 184 vDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~Gr 260 (280)
T KOG2792|consen 184 VDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGR 260 (280)
T ss_pred eCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcc
Confidence 996 6778899998755 34455555567788999987211 2 47999999999988765
No 211
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.04 E-value=6.4e-10 Score=100.64 Aligned_cols=69 Identities=19% Similarity=0.348 Sum_probs=57.5
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++++|+|||+||++|+.+.|.++++++++++. +.+..|+.+ ....++++|+|
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~------------------------~~~~l~~~~~I 104 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDAT------------------------RALNLAKRFAI 104 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCc------------------------ccHHHHHHcCC
Confidence 579999999999999999999999999998743 666666443 22678999999
Q ss_pred CCcCeEEEEcCCCCCCCeee
Q 015833 112 EGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~ 131 (399)
.++|++++++ +|+.+.
T Consensus 105 ~~~PTl~~f~----~G~~v~ 120 (224)
T PTZ00443 105 KGYPTLLLFD----KGKMYQ 120 (224)
T ss_pred CcCCEEEEEE----CCEEEE
Confidence 9999999998 676654
No 212
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=8.5e-10 Score=91.82 Aligned_cols=115 Identities=21% Similarity=0.222 Sum_probs=94.1
Q ss_pred HHhhhcCCCCccc-CCCCCceeeccccCC-cEEEEEEe-cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 170 INLLTNHDRGYLL-GHPPDEKVPVSSLVG-KTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 170 ~~~~g~~~p~f~l-~~~g~~~~~l~~~~g-k~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
.-.+|+.+|||+| +.||+ .++|..+.| ++|+++|| +...|-|.++.-.+..-|++++.. +.+|+++|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~-sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka---------~aeV~GlS 131 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGK-SISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA---------GAEVIGLS 131 (211)
T ss_pred eeecCCcCCCcccccCCCC-eeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc---------CceEEeec
Confidence 3347999999999 99999 999999998 48888888 457889999999999999999865 78999999
Q ss_pred cCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccc-------eEEEECCCCc
Q 015833 247 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIP-------CLVIIGPEGK 296 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P-------~~~lid~~G~ 296 (399)
.| +....++|..+.+ +.+.++.|...++.+.+|+...| ..+|++++|.
T Consensus 132 ~D-~s~sqKaF~sKqn-lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~ 186 (211)
T KOG0855|consen 132 GD-DSASQKAFASKQN-LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV 186 (211)
T ss_pred cC-chHHHHHhhhhcc-CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCe
Confidence 99 4455666665544 66677899999999999997655 5678877753
No 213
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=6.7e-09 Score=85.94 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=90.9
Q ss_pred CCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-----
Q 015833 176 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR----- 249 (399)
Q Consensus 176 ~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~----- 249 (399)
...+|++ +.+|+ .+++++++||++||.-.|+.|+.-. ....|+.||++|+++ |++|+++.++.
T Consensus 4 ~~yd~~~~~~~G~-~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~---------Gf~VLgFPcNQF~~QE 72 (162)
T COG0386 4 SIYDFSVKDIDGE-PVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDK---------GFEVLGFPCNQFGGQE 72 (162)
T ss_pred ccccceeeccCCC-CccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhC---------CcEEEeccccccccCC
Confidence 3467888 99999 9999999999999999999999877 455799999999987 99999999852
Q ss_pred --CHHHHHHHHhcCCCcccccCCc----------hhHHHHHhCC-------CCccceEEEECCCCcEEecccc
Q 015833 250 --DQTSFESYFGTMPWLALPFGDP----------TIKELTKYFD-------VQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 250 --~~~~~~~~~~~~~~~~~p~~~d----------~~~~~~~~~~-------v~~~P~~~lid~~G~i~~~~~~ 303 (399)
+.++++++....-..+||+... .-+.|..... |..==+-||||++|+||.|.+.
T Consensus 73 Pg~~eEI~~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p 145 (162)
T COG0386 73 PGSDEEIAKFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSP 145 (162)
T ss_pred CCCHHHHHHHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCC
Confidence 6688999999777788888432 1122333221 1112267999999999999753
No 214
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.02 E-value=2.6e-09 Score=86.71 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=53.3
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
++.++|+||++||++|+.+.|.|+++.+.+ + .+++..|++|.. .++
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~----------~i~~~~vd~d~~-----------------------~~l 67 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D----------KLKLEIYDFDED-----------------------KEK 67 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C----------ceEEEEEeCCcC-----------------------HHH
Confidence 345889999999999999999999998775 2 477888887754 678
Q ss_pred HHhCCCCccceEEEECC
Q 015833 277 TKYFDVQGIPCLVIIGP 293 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~ 293 (399)
++.|+|.++|++++++.
T Consensus 68 ~~~~~v~~vPt~~i~~~ 84 (113)
T cd02975 68 AEKYGVERVPTTIFLQD 84 (113)
T ss_pred HHHcCCCcCCEEEEEeC
Confidence 99999999999999954
No 215
>PTZ00062 glutaredoxin; Provisional
Probab=99.02 E-value=8.4e-10 Score=98.26 Aligned_cols=80 Identities=11% Similarity=0.038 Sum_probs=60.7
Q ss_pred cEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 015833 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 277 (399)
Q Consensus 198 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 277 (399)
..++++|||+||++|+.+.|.|.++.++|. + +.++.+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-----------~--~~F~~V~~d--------------------------- 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP-----------S--LEFYVVNLA--------------------------- 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC-----------C--cEEEEEccc---------------------------
Confidence 458999999999999999999999999875 3 444444422
Q ss_pred HhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHhccC
Q 015833 278 KYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL 335 (399)
Q Consensus 278 ~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~ 335 (399)
|+|.++|+++++ ++|+++.+ ..|.++ .+|...+.......
T Consensus 58 --~~V~~vPtfv~~-~~g~~i~r-------~~G~~~--------~~~~~~~~~~~~~~ 97 (204)
T PTZ00062 58 --DANNEYGVFEFY-QNSQLINS-------LEGCNT--------STLVSFIRGWAQKG 97 (204)
T ss_pred --cCcccceEEEEE-ECCEEEee-------eeCCCH--------HHHHHHHHHHcCCC
Confidence 789999999999 89999988 334333 56666666655543
No 216
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.02 E-value=3.8e-09 Score=94.43 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=92.7
Q ss_pred ccCCeEEecCCCCEEeccccCCCEEEEEEecCCCc-ccHhhHHHHHHHHHHHhcC-CCcEEEEEEecCC---ChHHHHHh
Q 015833 11 LRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNN-GSDFEVVFVSSDE---DLNAFNNY 85 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~-~~~~~ii~Vs~D~---~~~~~~~~ 85 (399)
...+|+|.|.+|+.++-.++.||+++++|..++|| .|..++..|.++.+++.++ |...+-++|++|. +.+.+.+|
T Consensus 118 iGGpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY 197 (280)
T KOG2792|consen 118 IGGPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEY 197 (280)
T ss_pred cCCceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHH
Confidence 45799999999999999999999999999999999 9999999999999998754 3344578999997 66788888
Q ss_pred HhcCC--CcccccCChHHHHHHHhhcCCC---------------CcCeEEEEcCCCCCCCeeecc
Q 015833 86 RACMP--WLAVPYSDLETKKALNRKFDIE---------------GIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 86 ~~~~~--~~~~~~~d~~~~~~l~~~~~v~---------------~~P~~~lid~~~~~G~i~~~~ 133 (399)
.++.+ .+.+.- ..+.-..+++.|.|- +.=.+||+|| +|+.+...
T Consensus 198 ~~eF~pkllGLTG-T~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidP---eg~Fvd~~ 258 (280)
T KOG2792|consen 198 VSEFHPKLLGLTG-TTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDP---EGEFVDYY 258 (280)
T ss_pred HHhcChhhhcccC-CHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECC---Ccceehhh
Confidence 88764 223332 222336778888773 3335788888 88887543
No 217
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.02 E-value=1.3e-09 Score=85.51 Aligned_cols=73 Identities=23% Similarity=0.438 Sum_probs=59.1
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|.||++||++|+.+.+.+.++.+.++.. .++.++.|+++.+ ..+
T Consensus 15 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~-----------------------~~~ 63 (101)
T cd02961 15 SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD--------GKVVVAKVDCTAN-----------------------NDL 63 (101)
T ss_pred CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC--------CceEEEEeeccch-----------------------HHH
Confidence 458999999999999999999999999888511 2567777766643 788
Q ss_pred HHhCCCCccceEEEECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.|+|.++|++++++++|+.+.+
T Consensus 64 ~~~~~i~~~Pt~~~~~~~~~~~~~ 87 (101)
T cd02961 64 CSEYGVRGYPTIKLFPNGSKEPVK 87 (101)
T ss_pred HHhCCCCCCCEEEEEcCCCccccc
Confidence 999999999999999877654444
No 218
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.3e-09 Score=90.81 Aligned_cols=113 Identities=18% Similarity=0.247 Sum_probs=88.8
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCC-EEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGK-VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 82 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~ 82 (399)
...+|..+|||+|+|.+|+.++|.++.|+ +|+++|| +..-|-|.++.-.+.+.|++++..+ .+|+++|.|.. .+-
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~s-~sq 138 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDDS-ASQ 138 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCch-HHH
Confidence 45678999999999999999999999765 8888888 6778899999999999999999887 99999999866 455
Q ss_pred HHhHhcCCCcccccCChHHHHHHHhhcCCCCcC-------eEEEEcC
Q 015833 83 NNYRACMPWLAVPYSDLETKKALNRKFDIEGIP-------CLVVLQP 122 (399)
Q Consensus 83 ~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P-------~~~lid~ 122 (399)
+.|..+.+...-..+|.. .++.+.+|+...| +.++++.
T Consensus 139 KaF~sKqnlPYhLLSDpk--~e~ik~lGa~k~p~gg~~~Rsh~if~k 183 (211)
T KOG0855|consen 139 KAFASKQNLPYHLLSDPK--NEVIKDLGAPKDPFGGLPGRSHYIFDK 183 (211)
T ss_pred HHhhhhccCCeeeecCcc--hhHHHHhCCCCCCCCCcccceEEEEec
Confidence 666665553222234543 7888888886544 5666664
No 219
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.00 E-value=1.5e-09 Score=86.35 Aligned_cols=68 Identities=25% Similarity=0.440 Sum_probs=56.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.+.++++.++.. .++.++.|+.+.. ...++++|+
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~-----------------------~~~~~~~~~ 72 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEA-----------------------NKDLAKKYG 72 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCc-----------------------chhhHHhCC
Confidence 3679999999999999999999999999998733 2477777755431 167889999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|+++++++
T Consensus 73 i~~~P~~~~~~~ 84 (105)
T cd02998 73 VSGFPTLKFFPK 84 (105)
T ss_pred CCCcCEEEEEeC
Confidence 999999999986
No 220
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.00 E-value=1.6e-09 Score=86.10 Aligned_cols=64 Identities=22% Similarity=0.401 Sum_probs=54.7
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++++|+||++||++|+.+.|.+.++++++.+. +.++.++.|. ...++++|+|
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~------------------------~~~~~~~~~i 70 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADV------------------------HQSLAQQYGV 70 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcc------------------------hHHHHHHCCC
Confidence 567999999999999999999999999998643 7777775542 2678899999
Q ss_pred CCcCeEEEEcC
Q 015833 112 EGIPCLVVLQP 122 (399)
Q Consensus 112 ~~~P~~~lid~ 122 (399)
.++|++++++.
T Consensus 71 ~~~P~~~~~~~ 81 (103)
T cd03001 71 RGFPTIKVFGA 81 (103)
T ss_pred CccCEEEEECC
Confidence 99999999985
No 221
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.97 E-value=4.7e-09 Score=79.73 Aligned_cols=62 Identities=15% Similarity=0.312 Sum_probs=50.8
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh
Q 015833 200 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 279 (399)
Q Consensus 200 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~ 279 (399)
.+..||++||++|+...|.|+++.+++.. .+.++.|+.+.+ .++++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~----------~~~~~~vd~~~~-----------------------~~~~~~ 48 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD----------AVEVEYINVMEN-----------------------PQKAME 48 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC----------ceEEEEEeCccC-----------------------HHHHHH
Confidence 46789999999999999999999988853 377788877654 567788
Q ss_pred CCCCccceEEEECCCCcE
Q 015833 280 FDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 280 ~~v~~~P~~~lid~~G~i 297 (399)
|++.++|++++ +|+.
T Consensus 49 ~~v~~vPt~~~---~g~~ 63 (82)
T TIGR00411 49 YGIMAVPAIVI---NGDV 63 (82)
T ss_pred cCCccCCEEEE---CCEE
Confidence 99999999876 5654
No 222
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.97 E-value=2.9e-09 Score=83.97 Aligned_cols=69 Identities=23% Similarity=0.453 Sum_probs=58.0
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++++|+||++||++|+.+.+.|+++++.+.+ ++.++.|+.|.. ..++++|++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~v 66 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNVDEN------------------------PDIAAKYGI 66 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEECCCC------------------------HHHHHHcCC
Confidence 57999999999999999999999999988854 388888866533 677889999
Q ss_pred CCcCeEEEEcCCCCCCCeee
Q 015833 112 EGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~ 131 (399)
..+|+++++. +|++..
T Consensus 67 ~~~P~~~~~~----~g~~~~ 82 (101)
T TIGR01068 67 RSIPTLLLFK----NGKEVD 82 (101)
T ss_pred CcCCEEEEEe----CCcEee
Confidence 9999999995 676653
No 223
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.97 E-value=2.5e-09 Score=106.30 Aligned_cols=69 Identities=17% Similarity=0.341 Sum_probs=57.7
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++|+|+|||+||++|+.+.|.|+++++++++. ++.++.|++|.+. ...
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~---------~v~~~kVdvD~~~---------------------~~~ 419 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS---------GVKVAKFRADGDQ---------------------KEF 419 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC---------CcEEEEEECCCCc---------------------cHH
Confidence 5789999999999999999999999999998754 5788888888652 123
Q ss_pred HHHhCCCCccceEEEECCCC
Q 015833 276 LTKYFDVQGIPCLVIIGPEG 295 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G 295 (399)
.++.|+|.++||+++| ++|
T Consensus 420 ~~~~~~I~~~PTii~F-k~g 438 (463)
T TIGR00424 420 AKQELQLGSFPTILFF-PKH 438 (463)
T ss_pred HHHHcCCCccceEEEE-ECC
Confidence 4578999999999999 444
No 224
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.95 E-value=2.2e-09 Score=95.21 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=56.6
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++|+|.||++||++|+.+.|.|.+++++|. .+.++-|.++ . .
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-----------~vkFvkI~ad--~------------------------~ 144 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP-----------DTKFVKIIST--Q------------------------C 144 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC-----------CCEEEEEEhH--H------------------------h
Confidence 4689999999999999999999999999875 3456555544 1 1
Q ss_pred HHhCCCCccceEEEECCCCcEEecccc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
...|++.++||++++ ++|+++.+..+
T Consensus 145 ~~~~~i~~lPTlliy-k~G~~v~~ivG 170 (192)
T cd02988 145 IPNYPDKNLPTILVY-RNGDIVKQFIG 170 (192)
T ss_pred HhhCCCCCCCEEEEE-ECCEEEEEEeC
Confidence 467899999999999 99999988544
No 225
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.93 E-value=5.2e-09 Score=86.04 Aligned_cols=80 Identities=18% Similarity=0.381 Sum_probs=58.0
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.|+.++|+|+++|||+|+.+.|.|.++.++. +..+..|++|.+.. ....+...-.++.+.|+
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGS-------------FEMSSLNDLTAFRSRFG 83 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccC-------------cCcccHHHHHHHHHHcC
Confidence 4788999999999999999999999998872 26688888875421 00111112245666655
Q ss_pred ----CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 ----IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 ----v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+.++|+++++. +|+.+.+
T Consensus 84 i~~~i~~~PT~v~~k----~Gk~v~~ 105 (122)
T TIGR01295 84 IPTSFMGTPTFVHIT----DGKQVSV 105 (122)
T ss_pred CcccCCCCCEEEEEe----CCeEEEE
Confidence 55699999998 8887765
No 226
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.93 E-value=4.3e-09 Score=85.42 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=53.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+++.++|+||++||++|+.+.|.|.++++.+ + .+.+..|+.|.. .+++++|+
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~~------------------------~~l~~~~~ 72 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDED------------------------KEKAEKYG 72 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCcC------------------------HHHHHHcC
Confidence 3567899999999999999999999998875 2 277777766533 67889999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|++++++.
T Consensus 73 v~~vPt~~i~~~ 84 (113)
T cd02975 73 VERVPTTIFLQD 84 (113)
T ss_pred CCcCCEEEEEeC
Confidence 999999999974
No 227
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.93 E-value=3.1e-09 Score=84.42 Aligned_cols=67 Identities=21% Similarity=0.463 Sum_probs=52.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+++++|+||++||++|+.+.|.+.++.+.+++. ..+.+..|+++. .++
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~------------------------~~~ 65 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD--------DNVVIAKMDATA------------------------NDV 65 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC--------CCEEEEEEeCcc------------------------hhh
Confidence 578999999999999999999999999988752 245666555542 245
Q ss_pred HHhCCCCccceEEEECCCC
Q 015833 277 TKYFDVQGIPCLVIIGPEG 295 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G 295 (399)
+..+++.++|+++++.+++
T Consensus 66 ~~~~~~~~~Pt~~~~~~~~ 84 (104)
T cd02995 66 PSEFVVDGFPTILFFPAGD 84 (104)
T ss_pred hhhccCCCCCEEEEEcCCC
Confidence 6778899999999995444
No 228
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.91 E-value=9.3e-09 Score=84.51 Aligned_cols=83 Identities=18% Similarity=0.083 Sum_probs=57.8
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
.-++|+|+|+|+++||++|+.+.+.. .++.+.+.+ ++.+|.|+.++..+.... .....
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~~~~~~~----------------~~~~~ 72 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREERPDVDKI----------------YMNAA 72 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcCcHHHHH----------------HHHHH
Confidence 34789999999999999999997632 245555543 388887777654221100 01222
Q ss_pred HhhcCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 106 NRKFDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 106 ~~~~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
...|++.++|+++++++ +|+++...
T Consensus 73 ~~~~~~~G~Pt~vfl~~---~G~~~~~~ 97 (124)
T cd02955 73 QAMTGQGGWPLNVFLTP---DLKPFFGG 97 (124)
T ss_pred HHhcCCCCCCEEEEECC---CCCEEeee
Confidence 33679999999999999 99998765
No 229
>PLN02309 5'-adenylylsulfate reductase
Probab=98.91 E-value=6.7e-09 Score=103.20 Aligned_cols=68 Identities=19% Similarity=0.360 Sum_probs=56.8
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++++++|+||++||++|+.+.|.+.+++++|... ++.++.|++|.+. ..
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~---------~V~f~kVD~d~~~----------------------~~ 412 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS---------GVKVAKFRADGDQ----------------------KE 412 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC---------CeEEEEEECCCcc----------------------hH
Confidence 5789999999999999999999999999998744 6888888877331 55
Q ss_pred HHH-hCCCCccceEEEECCC
Q 015833 276 LTK-YFDVQGIPCLVIIGPE 294 (399)
Q Consensus 276 ~~~-~~~v~~~P~~~lid~~ 294 (399)
++. .|+|.++||++++.++
T Consensus 413 la~~~~~I~~~PTil~f~~g 432 (457)
T PLN02309 413 FAKQELQLGSFPTILLFPKN 432 (457)
T ss_pred HHHhhCCCceeeEEEEEeCC
Confidence 665 6999999999999443
No 230
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.90 E-value=6.8e-09 Score=81.40 Aligned_cols=67 Identities=18% Similarity=0.368 Sum_probs=56.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++++++|+||++||++|+.+.|.+.++++.++.. .++.++.|+.+. ...++++|+
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~------------------------~~~~~~~~~ 68 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD-GKVVVAKVDCTA------------------------NNDLCSEYG 68 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC-CceEEEEeeccc------------------------hHHHHHhCC
Confidence 4569999999999999999999999999998521 247777775542 278899999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|+++++++
T Consensus 69 i~~~Pt~~~~~~ 80 (101)
T cd02961 69 VRGYPTIKLFPN 80 (101)
T ss_pred CCCCCEEEEEcC
Confidence 999999999997
No 231
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.86 E-value=1.6e-08 Score=77.69 Aligned_cols=68 Identities=31% Similarity=0.589 Sum_probs=57.2
Q ss_pred cEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 015833 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 277 (399)
Q Consensus 198 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 277 (399)
++++|+||++||++|..+.+.+.++.++ .. ++.++.|+++.+ ..++
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~---------~~~~~~i~~~~~-----------------------~~~~ 56 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YP---------KVKFVKVDVDEN-----------------------PELA 56 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CC---------CceEEEEECCCC-----------------------hhHH
Confidence 7899999999999999999999998877 22 578888887754 6788
Q ss_pred HhCCCCccceEEEECCCCcEEec
Q 015833 278 KYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 278 ~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
+.|++.++|+++++ ++|+++..
T Consensus 57 ~~~~v~~~P~~~~~-~~g~~~~~ 78 (93)
T cd02947 57 EEYGVRSIPTFLFF-KNGKEVDR 78 (93)
T ss_pred HhcCcccccEEEEE-ECCEEEEE
Confidence 99999999999999 56776655
No 232
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.84 E-value=1.2e-08 Score=80.97 Aligned_cols=66 Identities=15% Similarity=0.418 Sum_probs=53.9
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
.+++++|+||++||++|+.+.|.+.++++.+++. .++.+..|+.+. .+++..++
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~-------------------------~~~~~~~~ 70 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATA-------------------------NDVPSEFV 70 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcc-------------------------hhhhhhcc
Confidence 3689999999999999999999999999998763 247777775531 24566788
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
+.++|+++++..
T Consensus 71 ~~~~Pt~~~~~~ 82 (104)
T cd02995 71 VDGFPTILFFPA 82 (104)
T ss_pred CCCCCEEEEEcC
Confidence 899999999985
No 233
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.84 E-value=1.6e-08 Score=83.13 Aligned_cols=101 Identities=16% Similarity=0.238 Sum_probs=66.1
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHH--HHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLS--IYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~--l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
-++|+|+|+|++.||++|+.+....-+ -..++-++ ++.+|-+..|... . +
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---------~Fv~V~l~~d~td--------~----~------- 72 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---------DFIMLNLVHETTD--------K----N------- 72 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---------CeEEEEEEeccCC--------C----C-------
Confidence 358999999999999999998775431 22222222 3544444444221 0 0
Q ss_pred hHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHh
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA 332 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~ 332 (399)
.. ..+ .++|+++++|++|+++.+.-+ .++...|-..+.+++.|.+.+++.+
T Consensus 73 ---~~-~~g-~~vPtivFld~~g~vi~~i~G----y~~~~~~~y~~~~~~~~~~~m~~a~ 123 (130)
T cd02960 73 ---LS-PDG-QYVPRIMFVDPSLTVRADITG----RYSNRLYTYEPADIPLLIENMKKAL 123 (130)
T ss_pred ---cC-ccC-cccCeEEEECCCCCCcccccc----cccCccceeCcCcHHHHHHHHHHHH
Confidence 00 022 579999999999999877543 5666677777888888888776643
No 234
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.83 E-value=9.2e-09 Score=89.99 Aligned_cols=67 Identities=13% Similarity=0.273 Sum_probs=56.2
Q ss_pred CEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCC
Q 015833 33 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 112 (399)
Q Consensus 33 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 112 (399)
++|+|+||++||++|+.+.|.|.++++++. .+.++.|++| . ..++..|+|.
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d------------------------~-~~l~~~f~v~ 134 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRAS------------------------A-TGASDEFDTD 134 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEecc------------------------c-hhhHHhCCCC
Confidence 599999999999999999999999999873 2777777553 1 1677889999
Q ss_pred CcCeEEEEcCCCCCCCeeec
Q 015833 113 GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 113 ~~P~~~lid~~~~~G~i~~~ 132 (399)
.+|+++++. +|+.+..
T Consensus 135 ~vPTlllyk----~G~~v~~ 150 (175)
T cd02987 135 ALPALLVYK----GGELIGN 150 (175)
T ss_pred CCCEEEEEE----CCEEEEE
Confidence 999999998 7888764
No 235
>PTZ00102 disulphide isomerase; Provisional
Probab=98.83 E-value=2.5e-08 Score=101.37 Aligned_cols=72 Identities=21% Similarity=0.430 Sum_probs=57.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+++.++|.|||+||++|+++.|.+.++++.++.. ..++.++.|.++.+ ..
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~-------~~~i~~~~vd~~~~-----------------------~~ 97 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEK-------KSEIVLASVDATEE-----------------------ME 97 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhc-------CCcEEEEEEECCCC-----------------------HH
Confidence 4689999999999999999999999999888754 23455555544433 78
Q ss_pred HHHhCCCCccceEEEECCCCcE
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKT 297 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i 297 (399)
+++.|+|.++||+++++.++.+
T Consensus 98 l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 98 LAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred HHHhcCCCcccEEEEEECCceE
Confidence 9999999999999999544443
No 236
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.82 E-value=1.7e-08 Score=104.19 Aligned_cols=74 Identities=23% Similarity=0.467 Sum_probs=57.9
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 271 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 271 (399)
.+||+|+|+|||+||++|+.+.+.. .++.++++ ++.++.|+++.+. +
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-----------~~~~v~vDvt~~~-------------------~ 521 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-----------DTVLLQADVTANN-------------------A 521 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-----------CCEEEEEECCCCC-------------------h
Confidence 4589999999999999999987764 44555553 4667777776432 1
Q ss_pred hhHHHHHhCCCCccceEEEECCCCcEE
Q 015833 272 TIKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 272 ~~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
.+.+++++|++.++|+++++|++|+++
T Consensus 522 ~~~~l~~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 522 EDVALLKHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred hhHHHHHHcCCCCCCEEEEECCCCCCc
Confidence 247889999999999999999999985
No 237
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.82 E-value=1.1e-08 Score=101.61 Aligned_cols=68 Identities=16% Similarity=0.383 Sum_probs=56.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+++++||+|||+||++|+.+.|.|.++++++++.+ +.++.|++|.+.. ......|+
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~----------------------~~~~~~~~ 425 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQK----------------------EFAKQELQ 425 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCcc----------------------HHHHHHcC
Confidence 68899999999999999999999999999997654 7888887764300 23346899
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|+++++..
T Consensus 426 I~~~PTii~Fk~ 437 (463)
T TIGR00424 426 LGSFPTILFFPK 437 (463)
T ss_pred CCccceEEEEEC
Confidence 999999999985
No 238
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8.8e-09 Score=91.65 Aligned_cols=68 Identities=18% Similarity=0.422 Sum_probs=57.6
Q ss_pred eccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 26 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 26 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
+|+.-.+|.|+|+|+|.||+||++.+|.++.++.+|.. ..++.|++| ..+..
T Consensus 15 ~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd------------------------~c~~t 66 (288)
T KOG0908|consen 15 ELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVD------------------------ECRGT 66 (288)
T ss_pred hhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHH------------------------Hhhch
Confidence 35555689999999999999999999999999999943 667777554 23778
Q ss_pred HhhcCCCCcCeEEEEc
Q 015833 106 NRKFDIEGIPCLVVLQ 121 (399)
Q Consensus 106 ~~~~~v~~~P~~~lid 121 (399)
+..+||.++||++++.
T Consensus 67 aa~~gV~amPTFiff~ 82 (288)
T KOG0908|consen 67 AATNGVNAMPTFIFFR 82 (288)
T ss_pred hhhcCcccCceEEEEe
Confidence 8899999999999998
No 239
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.76 E-value=3.4e-08 Score=90.27 Aligned_cols=94 Identities=21% Similarity=0.378 Sum_probs=77.0
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
...|+|.|||.||+.++.+.|.+.+.++.++++ .++-++|+-++|++.+ ..+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e-------~P~~kvvwg~VDcd~e---------------------~~i 64 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE-------FPEGKVVWGKVDCDKE---------------------DDI 64 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHh-------CCCcceEEEEcccchh---------------------hHH
Confidence 467999999999999999999999999999987 5667899999998864 789
Q ss_pred HHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHHHHh
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA 332 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~ 332 (399)
+.+|.|+.+||+-|+ .+|.+..+..+ ..+.+++|...|++.+
T Consensus 65 a~ky~I~KyPTlKvf-rnG~~~~rEYR-------------g~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 65 ADKYHINKYPTLKVF-RNGEMMKREYR-------------GQRSVEALIEFIEKQL 106 (375)
T ss_pred hhhhccccCceeeee-eccchhhhhhc-------------cchhHHHHHHHHHHHh
Confidence 999999999999999 89988776422 3344566666665543
No 240
>PLN02309 5'-adenylylsulfate reductase
Probab=98.73 E-value=3.4e-08 Score=98.23 Aligned_cols=67 Identities=18% Similarity=0.419 Sum_probs=56.5
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh-hc
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR-KF 109 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~ 109 (399)
++|++||+|||+||++|+.+.|.|.+++++++..+ +.++.|+.|.. ...++. .|
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~--V~f~kVD~d~~-----------------------~~~la~~~~ 418 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG--VKVAKFRADGD-----------------------QKEFAKQEL 418 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--eEEEEEECCCc-----------------------chHHHHhhC
Confidence 58899999999999999999999999999997654 88888876522 145564 69
Q ss_pred CCCCcCeEEEEcC
Q 015833 110 DIEGIPCLVVLQP 122 (399)
Q Consensus 110 ~v~~~P~~~lid~ 122 (399)
+|.++||++++.+
T Consensus 419 ~I~~~PTil~f~~ 431 (457)
T PLN02309 419 QLGSFPTILLFPK 431 (457)
T ss_pred CCceeeEEEEEeC
Confidence 9999999999975
No 241
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.73 E-value=6.2e-08 Score=74.39 Aligned_cols=67 Identities=25% Similarity=0.487 Sum_probs=55.7
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++++|+||++||++|+.+.+.++++++. .. ++.++.|+.+.. ..+.+.|++
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~--~~~~~~i~~~~~------------------------~~~~~~~~v 61 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--YP--KVKFVKVDVDEN------------------------PELAEEYGV 61 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH--CC--CceEEEEECCCC------------------------hhHHHhcCc
Confidence 38999999999999999999999999887 22 488888876542 678889999
Q ss_pred CCcCeEEEEcCCCCCCCee
Q 015833 112 EGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~ 130 (399)
.++|++++++ +|+++
T Consensus 62 ~~~P~~~~~~----~g~~~ 76 (93)
T cd02947 62 RSIPTFLFFK----NGKEV 76 (93)
T ss_pred ccccEEEEEE----CCEEE
Confidence 9999999997 56544
No 242
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.3e-07 Score=78.04 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=99.8
Q ss_pred hhhcCCCCccc-CCCCCceeeccccCCcEEEEEEecC-CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 172 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 172 ~~g~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
.+|..+|+|++ +.+.+ .++++++.||..+|..+.+ ..|.|......+++...++. +..|+.||+|
T Consensus 19 ~vGd~ap~ftl~~~dL~-~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~-----------~~~Vl~IS~D- 85 (158)
T COG2077 19 QVGDKAPDFTLVGKDLN-DVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG-----------NTVVLCISMD- 85 (158)
T ss_pred ccCCcCCceEEEcCccc-ceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC-----------CcEEEEEeCC-
Confidence 47899999999 99999 9999999998877776654 89999999999988877764 5789999999
Q ss_pred CHHHHHHHHhcCCCcccccCCc-hhHHHHHhCCC--Cccc-------eEEEECCCCcEEecccc
Q 015833 250 DQTSFESYFGTMPWLALPFGDP-TIKELTKYFDV--QGIP-------CLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~~p~~~d-~~~~~~~~~~v--~~~P-------~~~lid~~G~i~~~~~~ 303 (399)
-+-+.++|+...+.-+....+| .+..+.+.||+ ...| +.|++|.+|+|++.+..
T Consensus 86 LPFAq~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv 149 (158)
T COG2077 86 LPFAQKRFCGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELV 149 (158)
T ss_pred ChhHHhhhhhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEcc
Confidence 6778899999988777777777 67789999996 3444 78999999999998644
No 243
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.71 E-value=7.6e-08 Score=76.39 Aligned_cols=64 Identities=22% Similarity=0.341 Sum_probs=55.2
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
|+++++.|+++||++|..+.|.+.+++++|+++ +.++.|++|.. ..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~----------v~f~~vd~~~~-----------------------~~~ 58 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK----------LLFVVVDADDF-----------------------GRH 58 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe----------EEEEEEchHhh-----------------------HHH
Confidence 789999999999999999999999999999754 66666665533 678
Q ss_pred HHhCCCC--ccceEEEECC
Q 015833 277 TKYFDVQ--GIPCLVIIGP 293 (399)
Q Consensus 277 ~~~~~v~--~~P~~~lid~ 293 (399)
++.||+. ++|++++++.
T Consensus 59 ~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 59 LEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred HHHcCCChhhCCEEEEEec
Confidence 9999999 9999999966
No 244
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.68 E-value=7.9e-08 Score=72.88 Aligned_cols=58 Identities=21% Similarity=0.394 Sum_probs=47.9
Q ss_pred EEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCc
Q 015833 35 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI 114 (399)
Q Consensus 35 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~ 114 (399)
.+..||++||++|+...|.|+++++.++.. +.++.|+.+++ .++.++|++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~v~~v 54 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMEN------------------------PQKAMEYGIMAV 54 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccC------------------------HHHHHHcCCccC
Confidence 467899999999999999999999988533 77888866533 566788999999
Q ss_pred CeEEE
Q 015833 115 PCLVV 119 (399)
Q Consensus 115 P~~~l 119 (399)
|++++
T Consensus 55 Pt~~~ 59 (82)
T TIGR00411 55 PAIVI 59 (82)
T ss_pred CEEEE
Confidence 99885
No 245
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.67 E-value=6.6e-08 Score=85.77 Aligned_cols=67 Identities=12% Similarity=0.181 Sum_probs=55.2
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+++|+|+||++||++|+.+.|.|.+++.++.. +.++.|+++ .....|++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~ad---------------------------~~~~~~~i 150 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIIST---------------------------QCIPNYPD 150 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEhH---------------------------HhHhhCCC
Confidence 46999999999999999999999999999842 667766442 12467999
Q ss_pred CCcCeEEEEcCCCCCCCeeecc
Q 015833 112 EGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~~~ 133 (399)
..+|+++++. +|+++..-
T Consensus 151 ~~lPTlliyk----~G~~v~~i 168 (192)
T cd02988 151 KNLPTILVYR----NGDIVKQF 168 (192)
T ss_pred CCCCEEEEEE----CCEEEEEE
Confidence 9999999998 88888654
No 246
>PHA02125 thioredoxin-like protein
Probab=98.67 E-value=1.2e-07 Score=70.87 Aligned_cols=57 Identities=32% Similarity=0.607 Sum_probs=42.3
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
+++||++||++|+...|.|.++ . +.++-|+.|.. .++++.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~----~------------~~~~~vd~~~~-----------------------~~l~~~~ 42 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV----E------------YTYVDVDTDEG-----------------------VELTAKH 42 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH----h------------heEEeeeCCCC-----------------------HHHHHHc
Confidence 6899999999999999987543 1 23444444433 6889999
Q ss_pred CCCccceEEEECCCCcEEec
Q 015833 281 DVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~~~ 300 (399)
+|.++||++ +|+.+.+
T Consensus 43 ~v~~~PT~~----~g~~~~~ 58 (75)
T PHA02125 43 HIRSLPTLV----NTSTLDR 58 (75)
T ss_pred CCceeCeEE----CCEEEEE
Confidence 999999986 4666554
No 247
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.66 E-value=2.4e-08 Score=90.93 Aligned_cols=75 Identities=19% Similarity=0.388 Sum_probs=59.5
Q ss_pred cEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 015833 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 277 (399)
Q Consensus 198 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 277 (399)
..++|.||||||.+|+++.|.+.++.-++++. +..|-.-.+|++. -..++
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdi---------g~PikVGKlDaT~---------------------f~aiA 93 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDI---------GLPIKVGKLDATR---------------------FPAIA 93 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhc---------CCceeeccccccc---------------------chhhH
Confidence 58999999999999999999999988877765 4444444556553 27889
Q ss_pred HhCCCCccceEEEECCCCcEEecccc
Q 015833 278 KYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 278 ~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
..|||+++||+.++ ++|..+.+.|+
T Consensus 94 nefgiqGYPTIk~~-kgd~a~dYRG~ 118 (468)
T KOG4277|consen 94 NEFGIQGYPTIKFF-KGDHAIDYRGG 118 (468)
T ss_pred hhhccCCCceEEEe-cCCeeeecCCC
Confidence 99999999999999 77766655443
No 248
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.65 E-value=1.2e-07 Score=69.15 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=49.3
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh
Q 015833 200 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 279 (399)
Q Consensus 200 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~ 279 (399)
-+..|+++||++|+...+.|+++.+.+ +++++..|++|.+ .++++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-----------~~i~~~~id~~~~-----------------------~~l~~~ 47 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-----------PNISAEMIDAAEF-----------------------PDLADE 47 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-----------CceEEEEEEcccC-----------------------HhHHHH
Confidence 367899999999999999988886543 2577877777654 568889
Q ss_pred CCCCccceEEEECCCCcEEec
Q 015833 280 FDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 280 ~~v~~~P~~~lid~~G~i~~~ 300 (399)
|++.++|++++ +|+++..
T Consensus 48 ~~i~~vPti~i---~~~~~~~ 65 (67)
T cd02973 48 YGVMSVPAIVI---NGKVEFV 65 (67)
T ss_pred cCCcccCEEEE---CCEEEEe
Confidence 99999999865 4566543
No 249
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.65 E-value=7.3e-08 Score=99.58 Aligned_cols=74 Identities=19% Similarity=0.391 Sum_probs=58.5
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
.+||+|+|+|||+||++|+.+.+.. .++.++++ ++.++.|+++++ +. ...++.
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~-------------------~~-~~~~l~ 527 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTAN-------------------NA-EDVALL 527 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCC-------------------Ch-hhHHHH
Confidence 3589999999999999999998764 55666663 277777777643 11 127889
Q ss_pred hhcCCCCcCeEEEEcCCCCCCCee
Q 015833 107 RKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
++|++.++|+++++++ +|+++
T Consensus 528 ~~~~v~g~Pt~~~~~~---~G~~i 548 (571)
T PRK00293 528 KHYNVLGLPTILFFDA---QGQEI 548 (571)
T ss_pred HHcCCCCCCEEEEECC---CCCCc
Confidence 9999999999999998 88874
No 250
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.3e-07 Score=77.90 Aligned_cols=119 Identities=15% Similarity=0.189 Sum_probs=89.0
Q ss_pred cCCCCccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC----
Q 015833 175 NHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---- 249 (399)
Q Consensus 175 ~~~p~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---- 249 (399)
...-+|+. +.+|+ .++++.++||++|+.--|+.|+.-......|..|+++|++. +++|++..++.
T Consensus 12 ~siydf~~~d~~G~-~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~---------Gl~ILaFPCNQFg~Q 81 (171)
T KOG1651|consen 12 GSIYDFSAKDLDGE-YVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ---------GLEILAFPCNQFGNQ 81 (171)
T ss_pred cceeeeEEecCCCC-CccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC---------CeEEEEeccccccCc
Confidence 34578888 99999 99999999999999999999999887788999999999977 89999999852
Q ss_pred ---CHHHHHHHHhcCCCcccccCCc------hhHHHHHhCC----------CCccceEEEECCCCcEEecccc
Q 015833 250 ---DQTSFESYFGTMPWLALPFGDP------TIKELTKYFD----------VQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 250 ---~~~~~~~~~~~~~~~~~p~~~d------~~~~~~~~~~----------v~~~P~~~lid~~G~i~~~~~~ 303 (399)
+.+++..++.......+|+... ...-+.+.+. |..==+-||+|++|+++.|.+.
T Consensus 82 Ep~~n~Ei~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~p 154 (171)
T KOG1651|consen 82 EPGSNEEILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSP 154 (171)
T ss_pred CCCCcHHHHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCC
Confidence 4467777777555555565321 1122222111 1111256999999999998654
No 251
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.62 E-value=4.4e-07 Score=73.67 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=56.2
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 269 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 269 (399)
+.-++|+++|+|+++||++|+.+.... .++.+.+.+ ++.++.++++...
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~----------~~v~~~~d~~~~e------------------ 64 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE----------NFIFWQCDIDSSE------------------ 64 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh----------CEEEEEecCCCcc------------------
Confidence 334589999999999999999976542 233444432 3444444443221
Q ss_pred CchhHHHHHhCCCCccceEEEECC-CCcEEecc
Q 015833 270 DPTIKELTKYFDVQGIPCLVIIGP-EGKTVTKQ 301 (399)
Q Consensus 270 ~d~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~ 301 (399)
...+++.|++.++|+++++|+ +|+++.+.
T Consensus 65 ---~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 65 ---GQRFLQSYKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred ---HHHHHHHhCccCCCeEEEEeCccCcEeEEE
Confidence 367899999999999999999 89999874
No 252
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.62 E-value=3.2e-07 Score=74.05 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=45.6
Q ss_pred CCcEEEEEEec--CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 196 VGKTVGLYFSA--RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 196 ~gk~vll~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
+.+.+||.|+| |||+ + .|.+.+|+.++... ...+.|.-|.+|...+ ..+
T Consensus 17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~a-------a~~v~lakVd~~d~~~------------------~~~ 67 (116)
T cd03007 17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASA-------TDDLLVAEVGIKDYGE------------------KLN 67 (116)
T ss_pred cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhh-------cCceEEEEEecccccc------------------hhh
Confidence 34789999999 6665 3 35556666665432 1234455555542100 014
Q ss_pred HHHHHhCCCC--ccceEEEECCCCc
Q 015833 274 KELTKYFDVQ--GIPCLVIIGPEGK 296 (399)
Q Consensus 274 ~~~~~~~~v~--~~P~~~lid~~G~ 296 (399)
.+|+++|+|+ ++||++|| ++|.
T Consensus 68 ~~L~~~y~I~~~gyPTl~lF-~~g~ 91 (116)
T cd03007 68 MELGERYKLDKESYPVIYLF-HGGD 91 (116)
T ss_pred HHHHHHhCCCcCCCCEEEEE-eCCC
Confidence 7899999999 99999999 5563
No 253
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=5.3e-07 Score=76.02 Aligned_cols=119 Identities=13% Similarity=0.264 Sum_probs=93.6
Q ss_pred hhcCCCCcccCCCCCceeeccccCCcEEEEEEec--CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-
Q 015833 173 LTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSA--RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 249 (399)
Q Consensus 173 ~g~~~p~f~l~~~g~~~~~l~~~~gk~vll~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~- 249 (399)
+|+.+|+|..+..-. .+.+.++.|.-+.|.|.- ...|.|..++..+.++.-+|..+ ++++++.|+|.
T Consensus 8 lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR---------nvKlialS~d~v 77 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR---------NVKLIALSVDDV 77 (224)
T ss_pred ccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc---------CceEEEeehhhH
Confidence 789999999944444 699999999877777884 48999999999999999999876 89999999995
Q ss_pred -CHHHHHHHH----hc-CCCcccccCCchhHHHHHhCCC--------Cc----cceEEEECCCCcEEecc
Q 015833 250 -DQTSFESYF----GT-MPWLALPFGDPTIKELTKYFDV--------QG----IPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 250 -~~~~~~~~~----~~-~~~~~~p~~~d~~~~~~~~~~v--------~~----~P~~~lid~~G~i~~~~ 301 (399)
+...|.+-+ +. .+-+.+|+..|..++++-.|+. .+ ...+++||++.++.-..
T Consensus 78 esH~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~ 147 (224)
T KOG0854|consen 78 ESHKDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSF 147 (224)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEE
Confidence 344554444 32 2237889999999999988875 12 44789999999987553
No 254
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.61 E-value=1.3e-07 Score=70.89 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=45.8
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCC
Q 015833 202 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 281 (399)
Q Consensus 202 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~ 281 (399)
|.||++||++|+...|.++++.+++.. .+++ +.+| +. ..+..|+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~----------~~~~--~~v~-~~-----------------------~~a~~~~ 46 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGI----------DAEF--EKVT-DM-----------------------NEILEAG 46 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCC----------CeEE--EEeC-CH-----------------------HHHHHcC
Confidence 789999999999999999999988753 2444 5555 32 2256689
Q ss_pred CCccceEEEECCCCcEEe
Q 015833 282 VQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 282 v~~~P~~~lid~~G~i~~ 299 (399)
+.++|++++ +|+++.
T Consensus 47 v~~vPti~i---~G~~~~ 61 (76)
T TIGR00412 47 VTATPGVAV---DGELVI 61 (76)
T ss_pred CCcCCEEEE---CCEEEE
Confidence 999999988 888773
No 255
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.56 E-value=2.4e-07 Score=71.65 Aligned_cols=71 Identities=11% Similarity=0.128 Sum_probs=57.5
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
.++++.+.+..|+++||++|....+.+.++.+++. ++++..+.+|..
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-----------~i~~~~vd~~~~---------------------- 54 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP-----------NIEHEMIDGALF---------------------- 54 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-----------CceEEEEEhHhC----------------------
Confidence 45677788999999999999999888888876543 467777777644
Q ss_pred hHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
.++++.|+|.++|++++ +|+++..
T Consensus 55 -~e~a~~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 55 -QDEVEERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred -HHHHHHcCCccCCEEEE---CCEEEEe
Confidence 67899999999999975 6888775
No 256
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.56 E-value=5.9e-08 Score=88.48 Aligned_cols=76 Identities=21% Similarity=0.378 Sum_probs=61.0
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
....+|+||||||+||+++.|.+.++--++++.|.++.|-.+ |++.-..++..|+|
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKl------------------------DaT~f~aiAnefgi 98 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKL------------------------DATRFPAIANEFGI 98 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeeccc------------------------ccccchhhHhhhcc
Confidence 358899999999999999999999999999988866666544 44444889999999
Q ss_pred CCcCeEEEEcCCCCCCCeeeccc
Q 015833 112 EGIPCLVVLQPYDDKDDATLHDG 134 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~~~~ 134 (399)
+++|++.++.. +-.+-++.+
T Consensus 99 qGYPTIk~~kg---d~a~dYRG~ 118 (468)
T KOG4277|consen 99 QGYPTIKFFKG---DHAIDYRGG 118 (468)
T ss_pred CCCceEEEecC---CeeeecCCC
Confidence 99999999985 444444443
No 257
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.54 E-value=1.8e-08 Score=60.98 Aligned_cols=29 Identities=38% Similarity=1.165 Sum_probs=14.3
Q ss_pred eecCCCCCCCCc-eeEEcCCCCCCCcCccc
Q 015833 360 FICCDCDEQGSG-WAYQCLECGYEVHPKCV 388 (399)
Q Consensus 360 ~~c~~C~~~~~~-w~~~c~~c~~~~~~~~~ 388 (399)
+.|+-|++.+.+ |.|+|.+|+|.||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 369999999998 99999999999999997
No 258
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.53 E-value=4.2e-07 Score=82.12 Aligned_cols=84 Identities=25% Similarity=0.323 Sum_probs=65.9
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
..+.+++-|++|+.+.|++|..+.|.|..+.++| |+.|+.||+|.... ..||-...
T Consensus 116 ~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y------------g~~v~~vs~DG~~~-----------~~fp~~~~- 171 (215)
T PF13728_consen 116 KQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY------------GFSVIPVSLDGRPI-----------PSFPNPRP- 171 (215)
T ss_pred HHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh------------CCEEEEEecCCCCC-----------cCCCCCCC-
Confidence 3445677899999999999999999999999887 58999999995421 12333222
Q ss_pred hHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
+..+++.+||..+|++||+++++.....
T Consensus 172 ~~g~~~~l~v~~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 172 DPGQAKRLGVKVTPALFLVNPNTKKWYP 199 (215)
T ss_pred CHHHHHHcCCCcCCEEEEEECCCCeEEE
Confidence 5778999999999999999998844433
No 259
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.52 E-value=3.8e-07 Score=72.33 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=55.9
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
|+++++.|+++||++|..+.|.+.++++++++. +.++.|+.| ....+++.|++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~------------------------~~~~~~~~~~i 64 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDAD------------------------DFGRHLEYFGL 64 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchH------------------------hhHHHHHHcCC
Confidence 789999999999999999999999999999854 888877443 23678999999
Q ss_pred C--CcCeEEEEcC
Q 015833 112 E--GIPCLVVLQP 122 (399)
Q Consensus 112 ~--~~P~~~lid~ 122 (399)
. ++|++++++.
T Consensus 65 ~~~~~P~~~~~~~ 77 (103)
T cd02982 65 KEEDLPVIAIINL 77 (103)
T ss_pred ChhhCCEEEEEec
Confidence 9 9999999985
No 260
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.6e-06 Score=71.93 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=85.5
Q ss_pred cCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChHHHHH
Q 015833 12 RRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNAFNN 84 (399)
Q Consensus 12 ~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D-------~~~~~~~~ 84 (399)
.-+|++++.+|++++|++++||++||--.|+-|+.-.. ...|+.+|++|++.| ++|++...+ .+.++..+
T Consensus 5 ~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 5 IYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred cccceeeccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHH
Confidence 45899999999999999999999999999999998885 556999999999998 999999875 35566667
Q ss_pred hHh-cCCCcccccC-------ChH-HHHHHHhhc-------CCCCcCeEEEEcCCCCCCCeeecc
Q 015833 85 YRA-CMPWLAVPYS-------DLE-TKKALNRKF-------DIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 85 ~~~-~~~~~~~~~~-------d~~-~~~~l~~~~-------~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+ +++..+..|+ +.. .-+-|..+. .|++--+-+|||+ +|+++.+.
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr---~G~VV~Rf 143 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDR---DGNVVKRF 143 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcC---CCcEEEee
Confidence 666 3332211111 100 112333222 4566678899999 99999774
No 261
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.47 E-value=5.3e-07 Score=74.21 Aligned_cols=94 Identities=11% Similarity=0.161 Sum_probs=56.9
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHH---HHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
-++|+|+|+|++.||++|+.+...+- ++.+.+.+ ++.+|.+..|.+... . .
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~td~~-----------------~---~--- 74 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETTDKN-----------------L---S--- 74 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccCCCC-----------------c---C---
Confidence 47999999999999999999986543 23333322 376666655533100 0 0
Q ss_pred hhcCCCCcCeEEEEcCCCCCCCeeeccchhhhhhcCCCCCCCChHHHHHHHH
Q 015833 107 RKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQK 158 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~~~~~G~i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~ 158 (399)
..+ .++|+++++|+ +|+++.+-. ..++-..|.+.+..+..+.+
T Consensus 75 -~~g-~~vPtivFld~---~g~vi~~i~----Gy~~~~~~~y~~~~~~~~~~ 117 (130)
T cd02960 75 -PDG-QYVPRIMFVDP---SLTVRADIT----GRYSNRLYTYEPADIPLLIE 117 (130)
T ss_pred -ccC-cccCeEEEECC---CCCCccccc----ccccCccceeCcCcHHHHHH
Confidence 022 47999999999 998886532 22233334444444444433
No 262
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.47 E-value=1e-06 Score=81.16 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=66.8
Q ss_pred ccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 015833 192 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 271 (399)
Q Consensus 192 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 271 (399)
+..+.+++-|++||.+.|++|.++.|.|+.+.++| |++|+.||+|.... ..||...
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y------------gi~v~~VS~DG~~~-----------p~fp~~~- 200 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY------------GISVIPISVDGTLI-----------PGLPNSR- 200 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh------------CCeEEEEecCCCCC-----------CCCCCcc-
Confidence 34455678899999999999999999999999887 58999999996521 2233332
Q ss_pred hhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 272 TIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 272 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
.+...++.+||..+|+++|++++++....
T Consensus 201 ~d~gqa~~l~v~~~Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 201 SDSGQAQHLGVKYFPALYLVNPKSQKMSP 229 (256)
T ss_pred CChHHHHhcCCccCceEEEEECCCCcEEE
Confidence 25778899999999999999999654444
No 263
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.44 E-value=7.5e-07 Score=64.83 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=43.9
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|+++||++|+...+.|+++.+.. . ++.+..+++|.. .+++++|++.++|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~--~--~i~~~~id~~~~------------------------~~l~~~~~i~~vP 54 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN--P--NISAEMIDAAEF------------------------PDLADEYGVMSVP 54 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC--C--ceEEEEEEcccC------------------------HhHHHHcCCcccC
Confidence 67899999999999999999886642 2 377777755432 5678899999999
Q ss_pred eEEE
Q 015833 116 CLVV 119 (399)
Q Consensus 116 ~~~l 119 (399)
++++
T Consensus 55 ti~i 58 (67)
T cd02973 55 AIVI 58 (67)
T ss_pred EEEE
Confidence 9865
No 264
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.43 E-value=1e-05 Score=83.86 Aligned_cols=178 Identities=12% Similarity=0.133 Sum_probs=105.8
Q ss_pred cccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 28 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
.++++.+.++.|+.+.|..|......|+++++. .+. +.+... |.....++++
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~~---i~~~~~------------------------~~~~~~~~~~ 413 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFASL-SEK---LNSEAV------------------------NRGEEPESET 413 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHHhc-CCc---EEEEEe------------------------ccccchhhHh
Confidence 456778888899888898998887777766633 332 544433 2222377888
Q ss_pred hcCCCCcCeEEEEcCCCCCCC---eeeccchhhhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHHHhhhcCCCCcccCC
Q 015833 108 KFDIEGIPCLVVLQPYDDKDD---ATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGH 184 (399)
Q Consensus 108 ~~~v~~~P~~~lid~~~~~G~---i~~~~~~~~i~~~g~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~ 184 (399)
.|++...|++.+++. +|+ +.... .|.-.+....+...... +...+..
T Consensus 414 ~~~v~~~P~~~i~~~---~~~~~~i~f~g------------~P~G~Ef~s~i~~i~~~-----------~~~~~~l---- 463 (555)
T TIGR03143 414 LPKITKLPTVALLDD---DGNYTGLKFHG------------VPSGHELNSFILALYNA-----------AGPGQPL---- 463 (555)
T ss_pred hcCCCcCCEEEEEeC---CCcccceEEEe------------cCccHhHHHHHHHHHHh-----------cCCCCCC----
Confidence 999999999999975 442 33321 23333322222222111 1111111
Q ss_pred CCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCc
Q 015833 185 PPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWL 264 (399)
Q Consensus 185 ~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~ 264 (399)
+.+..=.+..+.+...+-.|.+++|++|......++++..+. +++..-.|.....
T Consensus 464 ~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-----------~~i~~~~i~~~~~-------------- 518 (555)
T TIGR03143 464 GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-----------PNVEAEMIDVSHF-------------- 518 (555)
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-----------CCceEEEEECccc--------------
Confidence 000001123344555677778999999998776666665543 2455555544422
Q ss_pred ccccCCchhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 265 ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 265 ~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
+++++.|+|.++|++++ ||+++..
T Consensus 519 ---------~~~~~~~~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 519 ---------PDLKDEYGIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred ---------HHHHHhCCceecCEEEE---CCEEEEe
Confidence 78899999999999976 4666554
No 265
>PHA02125 thioredoxin-like protein
Probab=98.42 E-value=6.4e-07 Score=66.93 Aligned_cols=50 Identities=32% Similarity=0.545 Sum_probs=38.6
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.||++||++|+...|.|.++. +.++.|+.|. ..+++++|+|.++|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~------------------------~~~l~~~~~v~~~P 48 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDE------------------------GVELTAKHHIRSLP 48 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCC------------------------CHHHHHHcCCceeC
Confidence 78999999999999999986541 3344443322 27889999999999
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
+++
T Consensus 49 T~~ 51 (75)
T PHA02125 49 TLV 51 (75)
T ss_pred eEE
Confidence 987
No 266
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.42 E-value=8.2e-07 Score=71.74 Aligned_cols=66 Identities=11% Similarity=0.190 Sum_probs=46.6
Q ss_pred CCCEEEEEEec--CCCc---ccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 31 EGKVTALYFSA--NWYP---PCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 31 ~gk~vlv~F~a--~wC~---~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
+.+.+||.|+| |||+ +|.+++|.+.+.++ ++.|..|+.|.. ....+.+|
T Consensus 17 ~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-------~v~lakVd~~d~-------------------~~~~~~~L 70 (116)
T cd03007 17 KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-------DLLVAEVGIKDY-------------------GEKLNMEL 70 (116)
T ss_pred cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-------ceEEEEEecccc-------------------cchhhHHH
Confidence 56899999999 8887 55555555444322 377777766421 11223889
Q ss_pred HhhcCCC--CcCeEEEEcC
Q 015833 106 NRKFDIE--GIPCLVVLQP 122 (399)
Q Consensus 106 ~~~~~v~--~~P~~~lid~ 122 (399)
+.+|+|+ ++||++|+..
T Consensus 71 ~~~y~I~~~gyPTl~lF~~ 89 (116)
T cd03007 71 GERYKLDKESYPVIYLFHG 89 (116)
T ss_pred HHHhCCCcCCCCEEEEEeC
Confidence 9999999 9999999984
No 267
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.41 E-value=1.6e-06 Score=69.17 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=54.8
Q ss_pred Cccc-CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 015833 179 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 248 (399)
Q Consensus 179 ~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 248 (399)
+|++ +.+|+ .++++.++||++||.-.|+.|+.-. ....|++|+++|+++ +++|+++.++
T Consensus 3 df~~~~~~G~-~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~---------gl~ILaFPcn 62 (108)
T PF00255_consen 3 DFSAKDIDGK-PVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK---------GLEILAFPCN 62 (108)
T ss_dssp GSEEEBTTSS-EEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG---------TEEEEEEEBS
T ss_pred ceeeeCCCCC-EECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC---------CeEEEeeehH
Confidence 5777 89999 9999999999999999999999988 888999999999977 8999999986
No 268
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.40 E-value=9.4e-07 Score=66.21 Aligned_cols=54 Identities=17% Similarity=0.096 Sum_probs=42.4
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
-|.||++||++|+...|.+.++.+++... +.++.| | + ...+..|++.++|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~~~v--~---------------------~----~~~a~~~~v~~vP 51 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID---AEFEKV--T---------------------D----MNEILEAGVTATP 51 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC---eEEEEe--C---------------------C----HHHHHHcCCCcCC
Confidence 37899999999999999999999997533 666555 2 1 2225679999999
Q ss_pred eEEE
Q 015833 116 CLVV 119 (399)
Q Consensus 116 ~~~l 119 (399)
++++
T Consensus 52 ti~i 55 (76)
T TIGR00412 52 GVAV 55 (76)
T ss_pred EEEE
Confidence 9988
No 269
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=1.2e-06 Score=86.89 Aligned_cols=68 Identities=24% Similarity=0.408 Sum_probs=55.1
Q ss_pred CEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCC
Q 015833 33 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 112 (399)
Q Consensus 33 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 112 (399)
+..+|.||++||++|++++|.+.++++.+..=..-+.|..|+.- +. .+..+++.|+|.
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA---------------------~~-~N~~lCRef~V~ 115 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA---------------------DE-ENVKLCREFSVS 115 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc---------------------ch-hhhhhHhhcCCC
Confidence 47789999999999999999999999998764323556666442 11 338999999999
Q ss_pred CcCeEEEEcC
Q 015833 113 GIPCLVVLQP 122 (399)
Q Consensus 113 ~~P~~~lid~ 122 (399)
++|++..+.+
T Consensus 116 ~~Ptlryf~~ 125 (606)
T KOG1731|consen 116 GYPTLRYFPP 125 (606)
T ss_pred CCceeeecCC
Confidence 9999999987
No 270
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.35 E-value=1.9e-06 Score=65.56 Aligned_cols=44 Identities=39% Similarity=0.681 Sum_probs=33.2
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecC
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSD 76 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D 76 (399)
-+||+++|+|+++||++|+.+...+ .++.+.+..+ +..+.|+.+
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~ 61 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVD 61 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETT
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcC
Confidence 4689999999999999999998766 3344434433 777777664
No 271
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.35 E-value=2.8e-06 Score=67.73 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=56.4
Q ss_pred CeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 015833 14 RMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 76 (399)
Q Consensus 14 ~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D 76 (399)
+|+++|.+|+.++|+.++||++||---|+-|+.-. ....|++++++|++.| ++|+++..+
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcn 62 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCN 62 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBS
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehH
Confidence 68999999999999999999999999999999888 8889999999999987 999999875
No 272
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.35 E-value=2.2e-06 Score=78.48 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=63.7
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
..+.+++-|++||.+.|++|.++.|.|+.+.++| |+.|+.||+|.... ..||....
T Consensus 139 ~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y------------g~~v~~VS~DG~~~-----------p~fp~~~~- 194 (248)
T PRK13703 139 AKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY------------GLSVIPVSVDGVIN-----------PLLPDSRT- 194 (248)
T ss_pred HHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh------------CCeEEEEecCCCCC-----------CCCCCCcc-
Confidence 3444567899999999999999999999999887 58999999996421 23333322
Q ss_pred hHHHHHhCCCCccceEEEECCCCcEE
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
+...+..+||..+|+++|++++++-.
T Consensus 195 d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 195 DQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred ChhHHHhcCCcccceEEEEECCCCcE
Confidence 34566899999999999999997443
No 273
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.32 E-value=1.7e-06 Score=78.27 Aligned_cols=80 Identities=18% Similarity=0.341 Sum_probs=64.6
Q ss_pred ccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 27 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 27 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
+..+.+++-|++|+.+.|++|..+.|.|+.++++++ +.|+.||+|...-. .|.+...+..++
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-----~~v~~vs~DG~~~~-------------~fp~~~~~~g~~ 176 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG-----FSVIPVSLDGRPIP-------------SFPNPRPDPGQA 176 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-----CEEEEEecCCCCCc-------------CCCCCCCCHHHH
Confidence 455678899999999999999999999999999983 99999999965211 122222237888
Q ss_pred hhcCCCCcCeEEEEcCCCCCC
Q 015833 107 RKFDIEGIPCLVVLQPYDDKD 127 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~~~~~G 127 (399)
++++|..+|+++|+++ ++
T Consensus 177 ~~l~v~~~Pal~Lv~~---~~ 194 (215)
T PF13728_consen 177 KRLGVKVTPALFLVNP---NT 194 (215)
T ss_pred HHcCCCcCCEEEEEEC---CC
Confidence 9999999999999998 65
No 274
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=98.30 E-value=4.2e-07 Score=54.86 Aligned_cols=29 Identities=34% Similarity=0.969 Sum_probs=27.4
Q ss_pred eecCCCCCCCCce-eEEcCCCCCCCcCccc
Q 015833 360 FICCDCDEQGSGW-AYQCLECGYEVHPKCV 388 (399)
Q Consensus 360 ~~c~~C~~~~~~w-~~~c~~c~~~~~~~~~ 388 (399)
++|+-|.+...+- .|+|++|+|+||+.||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 5899999999988 9999999999999997
No 275
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=4.4e-06 Score=70.67 Aligned_cols=119 Identities=20% Similarity=0.222 Sum_probs=87.1
Q ss_pred cccccCCeEE---ecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC--hHH
Q 015833 8 VQQLRRRMTS---TKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--LNA 81 (399)
Q Consensus 8 ~~~~~p~f~l---~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~--~~~ 81 (399)
+...+|+|.- .|-.-+.++|++++||+|+++|| ..+--.|..+.-.++..+.+|++-+ -+|+++|+|.- .-+
T Consensus 6 ~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n--~eVig~S~DS~fshlA 83 (196)
T KOG0852|consen 6 VFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN--TEVLGISTDSVFSHLA 83 (196)
T ss_pred cCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC--CeEEEEeccchhhhhh
Confidence 3455688763 35555789999999999999999 5666699999999999999999876 89999999853 223
Q ss_pred HHHhHhcCC---CcccccCChHHHHHHHhhcCCC------CcCeEEEEcCCCCCCCeeec
Q 015833 82 FNNYRACMP---WLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 82 ~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~~G~i~~~ 132 (399)
|...-++.+ -+.+|. -.+...++++.|||- .+-.+++||+ +|.+.+-
T Consensus 84 W~ntprk~gGlg~~~iPl-lsD~~~~IsrdyGvL~~~~G~~lRglfIId~---~gi~R~i 139 (196)
T KOG0852|consen 84 WINTPRKQGGLGPLNIPL-LSDLNHEISRDYGVLKEDEGIALRGLFIIDP---DGILRQI 139 (196)
T ss_pred HhcCchhhCCcCccccce-eeccchhhHHhcCceecCCCcceeeeEEEcc---ccceEEe
Confidence 333333222 233443 333448999999993 4568899998 8877654
No 276
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.29 E-value=1.5e-06 Score=66.06 Aligned_cols=45 Identities=31% Similarity=0.632 Sum_probs=32.3
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDR 249 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 249 (399)
-+||+++|+|+++||++|+.+...+ .++.+.+.+ ++..+.|..+.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~----------~fv~v~vd~~~ 62 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK----------NFVLVKVDVDD 62 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH----------CSEEEEEETTT
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC----------CEEEEEEEcCC
Confidence 3589999999999999999987766 233443443 46666666653
No 277
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.29 E-value=1.2e-06 Score=72.68 Aligned_cols=77 Identities=22% Similarity=0.441 Sum_probs=46.9
Q ss_pred ccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 194 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 194 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
.+..+..++.|..+|||.|....|.|.++.+... ++++-.|..|.+.+...++.
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-----------~i~~~~i~rd~~~el~~~~l--------------- 91 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNVPVLAKIAEANP-----------NIEVRIILRDENKELMDQYL--------------- 91 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-----------TEEEEEE-HHHHHHHTTTTT---------------
T ss_pred hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-----------CCeEEEEEecCChhHHHHHH---------------
Confidence 3445678889999999999999999999998743 46777777775432111111
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
. .|...+|+++++|.+|+.+.+.
T Consensus 92 ---t--~g~~~IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 92 ---T--NGGRSIPTFIFLDKDGKELGRW 114 (129)
T ss_dssp ---T---SS--SSEEEEE-TT--EEEEE
T ss_pred ---h--CCCeecCEEEEEcCCCCEeEEE
Confidence 1 4689999999999999998874
No 278
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.23 E-value=5.7e-06 Score=65.80 Aligned_cols=72 Identities=33% Similarity=0.612 Sum_probs=53.9
Q ss_pred EEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHH
Q 015833 24 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK 103 (399)
Q Consensus 24 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~ 103 (399)
......+.++++++.||++||++|+..+|.+.++++++.. .+.++.++... ...
T Consensus 24 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~-----------------------~~~ 77 (127)
T COG0526 24 PLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDD-----------------------ENP 77 (127)
T ss_pred ceehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCC-----------------------CCh
Confidence 3445555589999999999999999999999999999875 26777776641 114
Q ss_pred HHHhhcC--CCCcCeEEEEc
Q 015833 104 ALNRKFD--IEGIPCLVVLQ 121 (399)
Q Consensus 104 ~l~~~~~--v~~~P~~~lid 121 (399)
.+...|+ +..+|++++..
T Consensus 78 ~~~~~~~~~~~~~p~~~~~~ 97 (127)
T COG0526 78 DLAAEFGVAVRSIPTLLLFK 97 (127)
T ss_pred HHHHHHhhhhccCCeEEEEe
Confidence 5555566 77788887655
No 279
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.23 E-value=3.9e-06 Score=64.84 Aligned_cols=65 Identities=11% Similarity=0.120 Sum_probs=51.7
Q ss_pred ccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 27 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 27 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
+.+++++.-+..|+++||++|+...+.+.++.+.+. ++.+..++.| ...+++
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~------------------------~~~e~a 58 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGA------------------------LFQDEV 58 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhH------------------------hCHHHH
Confidence 346788888999999999999999999998887642 2666666443 227888
Q ss_pred hhcCCCCcCeEEE
Q 015833 107 RKFDIEGIPCLVV 119 (399)
Q Consensus 107 ~~~~v~~~P~~~l 119 (399)
++|+|.++|++++
T Consensus 59 ~~~~V~~vPt~vi 71 (89)
T cd03026 59 EERGIMSVPAIFL 71 (89)
T ss_pred HHcCCccCCEEEE
Confidence 9999999999974
No 280
>smart00594 UAS UAS domain.
Probab=98.22 E-value=1.3e-05 Score=65.85 Aligned_cols=70 Identities=16% Similarity=0.350 Sum_probs=50.6
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 271 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 271 (399)
-.+|.++|+|+++||+.|..+....- ++.+.+.+ ++-++.++++...
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~----------~fv~~~~dv~~~e-------------------- 74 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE----------NFIFWQVDVDTSE-------------------- 74 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc----------CEEEEEecCCChh--------------------
Confidence 35789999999999999999766432 23333332 3444445444332
Q ss_pred hhHHHHHhCCCCccceEEEECCCC
Q 015833 272 TIKELTKYFDVQGIPCLVIIGPEG 295 (399)
Q Consensus 272 ~~~~~~~~~~v~~~P~~~lid~~G 295 (399)
...++..|++.++|+++++|++|
T Consensus 75 -g~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 75 -GQRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred -HHHHHHhcCcCCCCEEEEEecCC
Confidence 36789999999999999999997
No 281
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2e-05 Score=65.34 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=94.6
Q ss_pred ccccccccCCeEEecCCCCEEeccccCCCEEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 5 QWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 5 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
..++|..+|+|++.+.+.+.++++++.||..+|..+ +-.-|.|-.+...+++.+.++.+ ..++.||.|-. -+..
T Consensus 17 ~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~----~~Vl~IS~DLP-FAq~ 91 (158)
T COG2077 17 EPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN----TVVLCISMDLP-FAQK 91 (158)
T ss_pred CCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC----cEEEEEeCCCh-hHHh
Confidence 357899999999999999999999999997777766 66788999999999998888743 78999999844 4445
Q ss_pred HhHhcCCCc-ccccCChHHHHHHHhhcCCC--Cc-------CeEEEEcCCCCCCCeeeccchhhhhh
Q 015833 84 NYRACMPWL-AVPYSDLETKKALNRKFDIE--GI-------PCLVVLQPYDDKDDATLHDGVELIYK 140 (399)
Q Consensus 84 ~~~~~~~~~-~~~~~d~~~~~~l~~~~~v~--~~-------P~~~lid~~~~~G~i~~~~~~~~i~~ 140 (399)
++....+.. .++.+|- ....+.+.||+. .. ...+++|. +|++++......+.+
T Consensus 92 RfC~aeGi~nv~~lSd~-r~~~Fge~yGv~I~egpL~gLlARaV~V~De---~g~V~y~elv~eit~ 154 (158)
T COG2077 92 RFCGAEGIENVITLSDF-RDRAFGENYGVLINEGPLAGLLARAVFVLDE---NGKVTYSELVPEITE 154 (158)
T ss_pred hhhhhcCcccceEhhhh-hhhhhhHhhCEEeccccccCeeeeEEEEEcC---CCcEEEEEccchhhc
Confidence 565554433 2333332 226788889873 23 36788887 999998876655443
No 282
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.21 E-value=2.5e-06 Score=78.26 Aligned_cols=74 Identities=15% Similarity=0.303 Sum_probs=60.2
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
...|+|.|||.||+.++.++|.+.+.+++++.+-++-.+|+-.+ |++....|+.+|.|
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~V----------------------Dcd~e~~ia~ky~I 70 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKV----------------------DCDKEDDIADKYHI 70 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEc----------------------ccchhhHHhhhhcc
Confidence 56999999999999999999999999999987654444554444 44444889999999
Q ss_pred CCcCeEEEEcCCCCCCCeee
Q 015833 112 EGIPCLVVLQPYDDKDDATL 131 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~ 131 (399)
..+||+.++. +|....
T Consensus 71 ~KyPTlKvfr----nG~~~~ 86 (375)
T KOG0912|consen 71 NKYPTLKVFR----NGEMMK 86 (375)
T ss_pred ccCceeeeee----ccchhh
Confidence 9999999998 675543
No 283
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.18 E-value=2.9e-05 Score=62.89 Aligned_cols=78 Identities=14% Similarity=0.194 Sum_probs=54.9
Q ss_pred cccCCCEEEEEEecCCCcccHhhHHH-H--HHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHH
Q 015833 28 SDLEGKVTALYFSANWYPPCGNFTGV-L--VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 104 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 104 (399)
+.-++|+++|+|+++||++|..+... | .++.+.+++. +.++.++++.. + ...
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~---~v~~~~d~~~~-------------------e---~~~ 67 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN---FIFWQCDIDSS-------------------E---GQR 67 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC---EEEEEecCCCc-------------------c---HHH
Confidence 34468999999999999999998653 2 2344444432 66665544321 1 167
Q ss_pred HHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 105 LNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 105 l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+++.|++.++|+++++++ .+|+++..
T Consensus 68 ~~~~~~~~~~P~~~~i~~--~~g~~l~~ 93 (114)
T cd02958 68 FLQSYKVDKYPHIAIIDP--RTGEVLKV 93 (114)
T ss_pred HHHHhCccCCCeEEEEeC--ccCcEeEE
Confidence 889999999999999997 24666643
No 284
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.13 E-value=6.1e-06 Score=76.01 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=62.9
Q ss_pred ccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 27 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 27 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
++.+.+++-|++||.+.|++|..+.|.++.++++++ +.|+.||+|...- ..+| +...+..++
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-----i~v~~VS~DG~~~-----------p~fp--~~~~d~gqa 206 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-----ISVIPISVDGTLI-----------PGLP--NSRSDSGQA 206 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCC-----------CCCC--CccCChHHH
Confidence 455677899999999999999999999999999973 9999999996521 1122 222236788
Q ss_pred hhcCCCCcCeEEEEcC
Q 015833 107 RKFDIEGIPCLVVLQP 122 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~ 122 (399)
++++|..+|+++|+++
T Consensus 207 ~~l~v~~~Pal~Lv~~ 222 (256)
T TIGR02739 207 QHLGVKYFPALYLVNP 222 (256)
T ss_pred HhcCCccCceEEEEEC
Confidence 9999999999999998
No 285
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=3.2e-06 Score=83.94 Aligned_cols=69 Identities=23% Similarity=0.428 Sum_probs=56.9
Q ss_pred cEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 015833 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 277 (399)
Q Consensus 198 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 277 (399)
+..+|.||++||++|+.++|.++++++.+... .+-+.|.+|++-.+. +..+|
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W-------~~vv~vaaVdCA~~~---------------------N~~lC 109 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKW-------RPVVRVAAVDCADEE---------------------NVKLC 109 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcc-------cceeEEEEeeccchh---------------------hhhhH
Confidence 46899999999999999999999999998866 334556666554332 58999
Q ss_pred HhCCCCccceEEEECCC
Q 015833 278 KYFDVQGIPCLVIIGPE 294 (399)
Q Consensus 278 ~~~~v~~~P~~~lid~~ 294 (399)
+.|+|.++|++..+.++
T Consensus 110 Ref~V~~~Ptlryf~~~ 126 (606)
T KOG1731|consen 110 REFSVSGYPTLRYFPPD 126 (606)
T ss_pred hhcCCCCCceeeecCCc
Confidence 99999999999999776
No 286
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.08 E-value=7.9e-06 Score=74.84 Aligned_cols=78 Identities=22% Similarity=0.404 Sum_probs=61.9
Q ss_pred ccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 27 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 27 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
++++.+++-|++||.+.|++|..+.|.|+.++++++ +.|+.||+|.... ..+| +...+...+
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-----~~v~~VS~DG~~~-----------p~fp--~~~~d~gqa 199 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-----LSVIPVSVDGVIN-----------PLLP--DSRTDQGQA 199 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCC-----------CCCC--CCccChhHH
Confidence 455667899999999999999999999999999973 8999999996521 1122 222225566
Q ss_pred hhcCCCCcCeEEEEcC
Q 015833 107 RKFDIEGIPCLVVLQP 122 (399)
Q Consensus 107 ~~~~v~~~P~~~lid~ 122 (399)
.+++|..+|+++|+++
T Consensus 200 ~~l~v~~~PAl~Lv~~ 215 (248)
T PRK13703 200 QRLGVKYFPALMLVDP 215 (248)
T ss_pred HhcCCcccceEEEEEC
Confidence 8999999999999998
No 287
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.07 E-value=2.1e-05 Score=55.06 Aligned_cols=63 Identities=29% Similarity=0.575 Sum_probs=48.3
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.||++||++|....+.+.++ ++.. .++.++.++++..... ......+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~--------------------~~~~~~~ 49 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLN---------KGVKFEAVDVDEDPAL--------------------EKELKRY 49 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhC---------CCcEEEEEEcCCChHH--------------------hhHHHhC
Confidence 4789999999999999999988 3332 3789999998865321 1113578
Q ss_pred CCCccceEEEECCC
Q 015833 281 DVQGIPCLVIIGPE 294 (399)
Q Consensus 281 ~v~~~P~~~lid~~ 294 (399)
++..+|++++++++
T Consensus 50 ~~~~~P~~~~~~~~ 63 (69)
T cd01659 50 GVGGVPTLVVFGPG 63 (69)
T ss_pred CCccccEEEEEeCC
Confidence 89999999999765
No 288
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.06 E-value=1.4e-05 Score=63.50 Aligned_cols=71 Identities=38% Similarity=0.625 Sum_probs=53.6
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
....++++++.||++||++|+...|.+.++.+++.. .+.++.+.....
T Consensus 28 ~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~i~~~~~---------------------- 75 (127)
T COG0526 28 SELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG----------DVEVVAVNVDDE---------------------- 75 (127)
T ss_pred hhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC----------CcEEEEEECCCC----------------------
Confidence 334488999999999999999999999999998863 367888877511
Q ss_pred hHHHHHhCC--CCccceEEEECCCCc
Q 015833 273 IKELTKYFD--VQGIPCLVIIGPEGK 296 (399)
Q Consensus 273 ~~~~~~~~~--v~~~P~~~lid~~G~ 296 (399)
...+...|+ +..+|+++++ .+|.
T Consensus 76 ~~~~~~~~~~~~~~~p~~~~~-~~~~ 100 (127)
T COG0526 76 NPDLAAEFGVAVRSIPTLLLF-KDGK 100 (127)
T ss_pred ChHHHHHHhhhhccCCeEEEE-eCcc
Confidence 256666677 7888988766 3443
No 289
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.92 E-value=4.5e-05 Score=68.66 Aligned_cols=117 Identities=14% Similarity=0.146 Sum_probs=85.4
Q ss_pred HhhhcCCCCccc-CCCCCce-eeccccC--CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 171 NLLTNHDRGYLL-GHPPDEK-VPVSSLV--GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 171 ~~~g~~~p~f~l-~~~g~~~-~~l~~~~--gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
..+|..+||..+ +.+|+ . .++.++. +++++|+|.+-.||+=..-+..++++.++|.+. .+++.|.
T Consensus 73 a~~G~~APns~vv~l~g~-~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~----------adFl~VY 141 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTLDGQ-RSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV----------ADFLIVY 141 (237)
T ss_pred eeCCCCCCCCceEeeCCC-cceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh----------hheehhh
Confidence 347999999999 99999 6 8898884 499999999888999999999999999999875 3455554
Q ss_pred cCC--------------------CHH----HHHHHHhcCCCcccccCCc-hhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 247 TDR--------------------DQT----SFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 247 ~d~--------------------~~~----~~~~~~~~~~~~~~p~~~d-~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
+.. +.+ ..+...+.. ...|+..| .+....+.||..-- .++|| .+|+|++.+
T Consensus 142 I~EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~--~~~pi~vD~mdN~~~~~YgA~Pe-RlyIi-~~gkv~Y~G 217 (237)
T PF00837_consen 142 IEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF--PQCPIVVDTMDNNFNKAYGALPE-RLYII-QDGKVVYKG 217 (237)
T ss_pred HhhhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhC--CCCCEEEEccCCHHHHHhCCCcc-eEEEE-ECCEEEEeC
Confidence 411 111 122222233 46778777 47788888975433 45666 699999986
Q ss_pred c
Q 015833 302 G 302 (399)
Q Consensus 302 ~ 302 (399)
|
T Consensus 218 g 218 (237)
T PF00837_consen 218 G 218 (237)
T ss_pred C
Confidence 5
No 290
>smart00594 UAS UAS domain.
Probab=97.91 E-value=3.3e-05 Score=63.44 Aligned_cols=69 Identities=17% Similarity=0.338 Sum_probs=50.2
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
.-++|+++|+|+++||+.|..+.... .++.+.+.. ++.++.++++.. +. ..+
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~---------------------eg-~~l 78 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTS---------------------EG-QRV 78 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCCh---------------------hH-HHH
Confidence 34789999999999999999987542 123334432 266666644322 12 678
Q ss_pred HhhcCCCCcCeEEEEcC
Q 015833 106 NRKFDIEGIPCLVVLQP 122 (399)
Q Consensus 106 ~~~~~v~~~P~~~lid~ 122 (399)
+..|++.++|+++++++
T Consensus 79 ~~~~~~~~~P~~~~l~~ 95 (122)
T smart00594 79 SQFYKLDSFPYVAIVDP 95 (122)
T ss_pred HHhcCcCCCCEEEEEec
Confidence 99999999999999998
No 291
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.89 E-value=0.00015 Score=59.83 Aligned_cols=69 Identities=9% Similarity=0.125 Sum_probs=54.4
Q ss_pred EEEEEecC--CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 015833 200 VGLYFSAR--WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 277 (399)
Q Consensus 200 vll~F~a~--wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 277 (399)
.+|+|-+. -++-+....-.|.++.++|.+. ++.++.|++|.+ ..++
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~~---------~v~~akVDiD~~-----------------------~~LA 84 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPDY---------TWQVAIADLEQS-----------------------EAIG 84 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHhcCC---------ceEEEEEECCCC-----------------------HHHH
Confidence 44444432 5677777888899999998632 477888888755 7899
Q ss_pred HhCCCCccceEEEECCCCcEEecc
Q 015833 278 KYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 278 ~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
..|||.++||++++ ++|+.+.+.
T Consensus 85 ~~fgV~siPTLl~F-kdGk~v~~i 107 (132)
T PRK11509 85 DRFGVFRFPATLVF-TGGNYRGVL 107 (132)
T ss_pred HHcCCccCCEEEEE-ECCEEEEEE
Confidence 99999999999999 999999874
No 292
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.84 E-value=0.00012 Score=62.51 Aligned_cols=84 Identities=18% Similarity=0.346 Sum_probs=45.6
Q ss_pred ccccCCcEEEEEEecCCChhhhhhHHH-H--HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH-HHHHHHHhcCCCcccc
Q 015833 192 VSSLVGKTVGLYFSARWCIPCEKFMPK-L--LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ-TSFESYFGTMPWLALP 267 (399)
Q Consensus 192 l~~~~gk~vll~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~-~~~~~~~~~~~~~~~p 267 (399)
.+.-.+|+++|.++++||.+|..+... + .++++.+.+. +|.|.+|++. .++...+..
T Consensus 32 ~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~------------FI~VkvDree~Pdid~~y~~------- 92 (163)
T PF03190_consen 32 KAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN------------FIPVKVDREERPDIDKIYMN------- 92 (163)
T ss_dssp HHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-------------EEEEEETTT-HHHHHHHHH-------
T ss_pred HHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC------------EEEEEeccccCccHHHHHHH-------
Confidence 334457999999999999999987652 2 2344444443 6777777653 222222211
Q ss_pred cCCchhHHHHHhCCCCccceEEEECCCCcEEecc
Q 015833 268 FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 268 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
......|..|+|++++++++|+.+...
T Consensus 93 -------~~~~~~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 93 -------AVQAMSGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp -------HHHHHHS---SSEEEEE-TTS-EEEEE
T ss_pred -------HHHHhcCCCCCCceEEECCCCCeeeee
Confidence 111122788999999999999998753
No 293
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.81 E-value=9.7e-05 Score=51.59 Aligned_cols=62 Identities=31% Similarity=0.576 Sum_probs=47.0
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.||++||++|....+.+.++ ..... ++.++.++.+..... ......+++..+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~P 55 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNK--GVKFEAVDVDEDPAL---------------------EKELKRYGVGGVP 55 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCC--CcEEEEEEcCCChHH---------------------hhHHHhCCCcccc
Confidence 4789999999999999999998 33333 488988887655221 1114578899999
Q ss_pred eEEEEcC
Q 015833 116 CLVVLQP 122 (399)
Q Consensus 116 ~~~lid~ 122 (399)
++++++.
T Consensus 56 ~~~~~~~ 62 (69)
T cd01659 56 TLVVFGP 62 (69)
T ss_pred EEEEEeC
Confidence 9999985
No 294
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00019 Score=60.64 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=59.7
Q ss_pred cccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 015833 10 QLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 76 (399)
Q Consensus 10 ~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D 76 (399)
...-+|+..|.+|+.|+|+.++||++||---|+-|+.-...-..|..++++|++.| ++|++...+
T Consensus 12 ~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCN 76 (171)
T KOG1651|consen 12 GSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCN 76 (171)
T ss_pred cceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccc
Confidence 35568999999999999999999999999999999999977889999999999998 999999874
No 295
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00072 Score=56.42 Aligned_cols=85 Identities=25% Similarity=0.470 Sum_probs=59.5
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHHHH---HHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC-
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKLLS---IYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD- 270 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l~~---l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~- 270 (399)
-.+|+.++.|-.+.|++|.++-..+.. +.+-+.. ++.++-+....+.. ..+-.+.
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~----------hf~~~~l~i~~skp-----------v~f~~g~k 98 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE----------HFSAYYLNISYSKP-----------VLFKVGDK 98 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh----------CeEEEEEEeccCcc-----------eEeecCce
Confidence 457999999999999999987665532 3333332 47777776643321 1111111
Q ss_pred ---chhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 271 ---PTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 271 ---d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
-...++++.|+|+++|+++++|++|+.+..
T Consensus 99 ee~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 99 EEKMSTEELAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred eeeecHHHHHHHhccccCceEEEEcCCCCEEEe
Confidence 135799999999999999999999998866
No 296
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.69 E-value=0.00012 Score=60.62 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=44.0
Q ss_pred cccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHh
Q 015833 28 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 107 (399)
..+..+..++-|..+|||.|....|.|.++++... ++.+=.+..|+. .++..
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~------------------------~el~~ 88 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDEN------------------------KELMD 88 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHH------------------------HHHTT
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCC------------------------hhHHH
Confidence 34566788899999999999999999999999843 255544544322 33333
Q ss_pred h---cCCCCcCeEEEEcCCCCCCCeeec
Q 015833 108 K---FDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 108 ~---~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
+ .+...+|+++++|. +|+.+.+
T Consensus 89 ~~lt~g~~~IP~~I~~d~---~~~~lg~ 113 (129)
T PF14595_consen 89 QYLTNGGRSIPTFIFLDK---DGKELGR 113 (129)
T ss_dssp TTTT-SS--SSEEEEE-T---T--EEEE
T ss_pred HHHhCCCeecCEEEEEcC---CCCEeEE
Confidence 3 46789999999998 7877755
No 297
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.68 E-value=8.4e-05 Score=74.87 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=54.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHH-HHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLV-DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~-~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
++|+|+|+|||.||-.|+.+.+..- +.....+-.+ +..+-++..++ |.. ..++.++|
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~--~vlLqaDvT~~-------------------~p~-~~~lLk~~ 530 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD--VVLLQADVTAN-------------------DPA-ITALLKRL 530 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC--eEEEEeeecCC-------------------CHH-HHHHHHHc
Confidence 4569999999999999999987544 5455544443 66666655333 333 37889999
Q ss_pred CCCCcCeEEEEcCCCCCCCe
Q 015833 110 DIEGIPCLVVLQPYDDKDDA 129 (399)
Q Consensus 110 ~v~~~P~~~lid~~~~~G~i 129 (399)
++-+.|+++++++ +|+-
T Consensus 531 ~~~G~P~~~ff~~---~g~e 547 (569)
T COG4232 531 GVFGVPTYLFFGP---QGSE 547 (569)
T ss_pred CCCCCCEEEEECC---CCCc
Confidence 9999999999998 6643
No 298
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.62 E-value=0.00044 Score=50.54 Aligned_cols=56 Identities=25% Similarity=0.518 Sum_probs=40.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
+..|+++||++|+...+.|.+ . ++.+..++++.+.+. ..++.+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~---------~i~~~~vdi~~~~~~-------------------~~~~~~~~ 46 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K---------GIAFEEIDVEKDSAA-------------------REEVLKVL 46 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C---------CCeEEEEeccCCHHH-------------------HHHHHHHh
Confidence 467899999999988766643 2 467777887765421 14567778
Q ss_pred CCCccceEEEE
Q 015833 281 DVQGIPCLVII 291 (399)
Q Consensus 281 ~v~~~P~~~li 291 (399)
++.++|++++.
T Consensus 47 ~~~~vP~~~~~ 57 (74)
T TIGR02196 47 GQRGVPVIVIG 57 (74)
T ss_pred CCCcccEEEEC
Confidence 99999999763
No 299
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00027 Score=60.00 Aligned_cols=123 Identities=16% Similarity=0.308 Sum_probs=87.7
Q ss_pred CCccccccccccCCeEEecCCCCEEeccccCCCEEEEEEe--cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC-
Q 015833 1 MSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS--ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE- 77 (399)
Q Consensus 1 ~~~~~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~- 77 (399)
|+...+..|..+|+|+.-...|+ +.+.|+-|.-..|.|. |..-|.|.+++..+++++-+|..++ +..|+.|+|.
T Consensus 1 m~~~~l~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn--vKlialS~d~v 77 (224)
T KOG0854|consen 1 MDGPRLRLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN--VKLIALSVDDV 77 (224)
T ss_pred CCCCcccccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC--ceEEEeehhhH
Confidence 56677778999999999888886 9999998887777777 6778999999999999999999886 9999999984
Q ss_pred -ChHHHHHhHh----cCCCcccccC-ChHHHHHHHhhcCCC------------CcCeEEEEcCCCCCCCee
Q 015833 78 -DLNAFNNYRA----CMPWLAVPYS-DLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 78 -~~~~~~~~~~----~~~~~~~~~~-d~~~~~~l~~~~~v~------------~~P~~~lid~~~~~G~i~ 130 (399)
+...|.+-++ ..+- .++|+ -.+...+++-.|++- ..-.++++++ +.++.
T Consensus 78 esH~~Wi~DIks~~~~~~~-~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~p---dkKir 144 (224)
T KOG0854|consen 78 ESHKDWIKDIKSYAKVKNH-SVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDP---DKKIR 144 (224)
T ss_pred HHHHHHHHHHHHHHhccCC-CCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECC---CceEE
Confidence 3344443332 1121 12222 112236777666551 2446778888 76665
No 300
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.60 E-value=0.00035 Score=51.85 Aligned_cols=63 Identities=16% Similarity=0.353 Sum_probs=39.9
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH-h
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK-Y 279 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~-~ 279 (399)
+..||++||++|+...+.|.++ ++.+-.|+++.+... ...+.+ .
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~----------------~~~~~~idi~~~~~~-------------------~~~~~~~~ 46 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL----------------GAAYEWVDIEEDEGA-------------------ADRVVSVN 46 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc----------------CCceEEEeCcCCHhH-------------------HHHHHHHh
Confidence 5679999999999988876543 234455666654321 112222 2
Q ss_pred CCCCccceEEEECCCCcEEec
Q 015833 280 FDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 280 ~~v~~~P~~~lid~~G~i~~~ 300 (399)
+++.++|++ ++ .+|+++..
T Consensus 47 ~~~~~vP~i-~~-~~g~~l~~ 65 (77)
T TIGR02200 47 NGNMTVPTV-KF-ADGSFLTN 65 (77)
T ss_pred CCCceeCEE-EE-CCCeEecC
Confidence 578999986 46 46776654
No 301
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.58 E-value=0.00055 Score=55.61 Aligned_cols=74 Identities=11% Similarity=0.075 Sum_probs=51.9
Q ss_pred cCCcEEEEEEecC----CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC
Q 015833 195 LVGKTVGLYFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 270 (399)
Q Consensus 195 ~~gk~vll~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~ 270 (399)
-.+|.++|+++++ ||..|+..+.. .++.+-+.+ ++-+++.+++...
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~----------~fv~w~~dv~~~e------------------- 64 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT----------RMLFWACSVAKPE------------------- 64 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc----------CEEEEEEecCChH-------------------
Confidence 3579999999999 88899775432 233333332 4555555555332
Q ss_pred chhHHHHHhCCCCccceEEEE---CCCCcEEec
Q 015833 271 PTIKELTKYFDVQGIPCLVII---GPEGKTVTK 300 (399)
Q Consensus 271 d~~~~~~~~~~v~~~P~~~li---d~~G~i~~~ 300 (399)
..+++..+++.++|++.++ +.+.+++.+
T Consensus 65 --g~~la~~l~~~~~P~~~~l~~~~~~~~vv~~ 95 (116)
T cd02991 65 --GYRVSQALRERTYPFLAMIMLKDNRMTIVGR 95 (116)
T ss_pred --HHHHHHHhCCCCCCEEEEEEecCCceEEEEE
Confidence 3789999999999999999 555666766
No 302
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=9.3e-05 Score=64.97 Aligned_cols=90 Identities=20% Similarity=0.401 Sum_probs=67.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
.++++|.|+|.|.+.|....|.+.++..+|... ++++-.|.+..- ...
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~---------~lkFGkvDiGrf-----------------------pd~ 191 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN---------LLKFGKVDIGRF-----------------------PDV 191 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHHHHHhCCC---------CCcccceeeccC-----------------------cCh
Confidence 468999999999999999999999999999754 677777776654 234
Q ss_pred HHhCCC------CccceEEEECCCCcEEecccchhhhhhc-ccCCCCChHHH
Q 015833 277 TKYFDV------QGIPCLVIIGPEGKTVTKQGRNLINLYQ-ENAYPFTEAKL 321 (399)
Q Consensus 277 ~~~~~v------~~~P~~~lid~~G~i~~~~~~~~~~~~g-~~~~p~~~~~~ 321 (399)
+.+|+| +..||.+|+ ++|+-+.|. +.+..-| ...|+|+++-+
T Consensus 192 a~kfris~s~~srQLPT~ilF-q~gkE~~Rr--P~vd~~gra~s~~fSeenv 240 (265)
T KOG0914|consen 192 AAKFRISLSPGSRQLPTYILF-QKGKEVSRR--PDVDVKGRAVSFPFSEENV 240 (265)
T ss_pred HHheeeccCcccccCCeEEEE-ccchhhhcC--ccccccCCcccccccHHHH
Confidence 555555 678999999 889887764 3333333 45588888754
No 303
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.55 E-value=0.00015 Score=73.11 Aligned_cols=77 Identities=26% Similarity=0.465 Sum_probs=53.5
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHH-HHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLS-IYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 274 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 274 (399)
++|+|+|+|||.||-.|+.+.+..-. .....+- .++..+-+++..+. +.+.
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~---------~~~vlLqaDvT~~~-------------------p~~~ 524 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL---------QDVVLLQADVTAND-------------------PAIT 524 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc---------CCeEEEEeeecCCC-------------------HHHH
Confidence 45699999999999999997775442 2222221 24555555443221 2257
Q ss_pred HHHHhCCCCccceEEEECCCCcEEec
Q 015833 275 ELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 275 ~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++.++|++-+.|++++++++|+-...
T Consensus 525 ~lLk~~~~~G~P~~~ff~~~g~e~~~ 550 (569)
T COG4232 525 ALLKRLGVFGVPTYLFFGPQGSEPEI 550 (569)
T ss_pred HHHHHcCCCCCCEEEEECCCCCcCcC
Confidence 88999999999999999999875433
No 304
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.48 E-value=0.00024 Score=53.73 Aligned_cols=59 Identities=19% Similarity=0.342 Sum_probs=41.1
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|+++|||+|+...+.|.++. +.. .++++-|+.+.+.. .....+.+.+++..+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~-------------------~~~~~l~~~~g~~~vP 56 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGS-------------------EIQDYLEEITGQRTVP 56 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChH-------------------HHHHHHHHHhCCCCCC
Confidence 46789999999999999988865 211 26666665543311 2224577778999999
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
+++
T Consensus 57 ~v~ 59 (84)
T TIGR02180 57 NIF 59 (84)
T ss_pred eEE
Confidence 975
No 305
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.43 E-value=0.00059 Score=49.84 Aligned_cols=56 Identities=18% Similarity=0.491 Sum_probs=40.5
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
+..|+++||++|+...+.|.+ .+ +.+..++++.+.. ...++.+.+++.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~--------------------~~~~~~~~~~~~~vP 52 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KG--IAFEEIDVEKDSA--------------------AREEVLKVLGQRGVP 52 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CC--CeEEEEeccCCHH--------------------HHHHHHHHhCCCccc
Confidence 467899999999998877654 23 6666676654422 125677889999999
Q ss_pred eEEEE
Q 015833 116 CLVVL 120 (399)
Q Consensus 116 ~~~li 120 (399)
++++-
T Consensus 53 ~~~~~ 57 (74)
T TIGR02196 53 VIVIG 57 (74)
T ss_pred EEEEC
Confidence 98864
No 306
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.41 E-value=0.00032 Score=53.08 Aligned_cols=65 Identities=23% Similarity=0.396 Sum_probs=44.1
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|+++|||+|....+.|.++. +. ..+.++-|+.+.+..+.+ ..+.+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~----------~~~~~~~v~~~~~~~~~~------------------~~l~~~~ 50 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK----------PAYEVVELDQLSNGSEIQ------------------DYLEEIT 50 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC----------CCCEEEEeeCCCChHHHH------------------HHHHHHh
Confidence 46789999999999998888765 21 126677777664433222 3466677
Q ss_pred CCCccceEEEECCCCcEE
Q 015833 281 DVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~ 298 (399)
++..+|+++ + +|+.+
T Consensus 51 g~~~vP~v~-i--~g~~i 65 (84)
T TIGR02180 51 GQRTVPNIF-I--NGKFI 65 (84)
T ss_pred CCCCCCeEE-E--CCEEE
Confidence 899999985 4 45543
No 307
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.40 E-value=0.0007 Score=54.96 Aligned_cols=77 Identities=22% Similarity=0.474 Sum_probs=48.3
Q ss_pred CcEEEEEEec-------CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 015833 197 GKTVGLYFSA-------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 269 (399)
Q Consensus 197 gk~vll~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 269 (399)
|++++|+|++ +|||.|....|.+++......+ +..+|-|.+. +...|+.-
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~----------~~~lv~v~VG-~r~~Wkdp------------ 75 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE----------NARLVYVEVG-DRPEWKDP------------ 75 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST----------TEEEEEEE----HHHHC-T------------
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC----------CceEEEEEcC-CHHHhCCC------------
Confidence 5677888874 3999999999999988777432 5677777775 34444321
Q ss_pred CchhHHHHH--hCCCCccceEEEECCCCcEEe
Q 015833 270 DPTIKELTK--YFDVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 270 ~d~~~~~~~--~~~v~~~P~~~lid~~G~i~~ 299 (399)
+..+.. .+.++++||++-++..++++.
T Consensus 76 ---~n~fR~~p~~~l~~IPTLi~~~~~~rL~e 104 (119)
T PF06110_consen 76 ---NNPFRTDPDLKLKGIPTLIRWETGERLVE 104 (119)
T ss_dssp ---TSHHHH--CC---SSSEEEECTSS-EEEH
T ss_pred ---CCCceEcceeeeeecceEEEECCCCccch
Confidence 233333 589999999999977666554
No 308
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.34 E-value=0.0023 Score=59.35 Aligned_cols=93 Identities=12% Similarity=0.186 Sum_probs=56.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec---CC-------------CH-HHHHHHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST---DR-------------DQ-TSFESYF 258 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~---d~-------------~~-~~~~~~~ 258 (399)
.++.+++.|..+.||+|+++...+.++.+. . +++|..+.+ .. ++ ..|..+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g----------~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~ 183 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--G----------KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYE 183 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--C----------ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHH
Confidence 467899999999999999998887765432 1 244444432 11 11 1122222
Q ss_pred hcCCC--ccccc--------CCchhHHHHHhCCCCccceEEEECCCCcEEec
Q 015833 259 GTMPW--LALPF--------GDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 259 ~~~~~--~~~p~--------~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
..... +.-+- ..+.+..+++.+|++++|++|+.|.+|++...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 184 ASGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQV 235 (251)
T ss_pred HhhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEe
Confidence 11110 00110 11235668899999999999999999986444
No 309
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.31 E-value=0.0038 Score=57.18 Aligned_cols=87 Identities=22% Similarity=0.305 Sum_probs=54.0
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---C----------------HHHHHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---D----------------QTSFES 256 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~----------------~~~~~~ 256 (399)
.|+.+++.|..+.||+|+++.+.+.++.+ . ++.|..+.... . ...+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~---------~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~ 172 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----L---------GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDD 172 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----C---------CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHH
Confidence 36789999999999999999888776532 2 35555543211 0 112222
Q ss_pred HHhcCCCcc---cccCCchhHHHHHhCCCCccceEEEECCCCcEE
Q 015833 257 YFGTMPWLA---LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 257 ~~~~~~~~~---~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
++.... .. .....+.+.++++.+||+++|+++ + ++|+.+
T Consensus 173 ~~~~~~-~~~~~c~~~v~~~~~la~~lgi~gTPtiv-~-~~G~~~ 214 (232)
T PRK10877 173 AMKGKD-VSPASCDVDIADHYALGVQFGVQGTPAIV-L-SNGTLV 214 (232)
T ss_pred HHcCCC-CCcccccchHHHhHHHHHHcCCccccEEE-E-cCCeEe
Confidence 222111 11 111223678899999999999998 4 578765
No 310
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0014 Score=54.74 Aligned_cols=90 Identities=18% Similarity=0.311 Sum_probs=60.0
Q ss_pred ccCCCEEEEEEecCCCcccHhhHHHHH---HHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 29 DLEGKVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 29 ~~~gk~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
..++|+++++|..+.|++|..+...+. ++.+-+++. +.++.+....+.... +..+- . .......+|
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skpv~--f~~g~--k----ee~~s~~EL 107 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKPVL--FKVGD--K----EEKMSTEEL 107 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcceE--eecCc--e----eeeecHHHH
Confidence 347899999999999999999875543 344445443 777777664321100 00000 0 011233799
Q ss_pred HhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 106 NRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 106 ~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
++.|+|+++|+++++|. +|+.+..
T Consensus 108 a~kf~vrstPtfvFfdk---~Gk~Il~ 131 (182)
T COG2143 108 AQKFAVRSTPTFVFFDK---TGKTILE 131 (182)
T ss_pred HHHhccccCceEEEEcC---CCCEEEe
Confidence 99999999999999999 8877644
No 311
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.26 E-value=0.00027 Score=60.43 Aligned_cols=88 Identities=24% Similarity=0.261 Sum_probs=45.8
Q ss_pred CEEeccccCCCEEEEEEecCCCcccHhhHH-HH--HHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCCh
Q 015833 23 EEVKVSDLEGKVTALYFSANWYPPCGNFTG-VL--VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL 99 (399)
Q Consensus 23 ~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p-~l--~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~ 99 (399)
+.+..+.-++|+|+|+++++||..|..+.. .+ .++++.+... |.-|.|+.++.++- |.
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDree~Pdi----------------d~ 88 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDREERPDI----------------DK 88 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEETTT-HHH----------------HH
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEeccccCccH----------------HH
Confidence 444555567999999999999999998874 22 2244444433 65555554433221 11
Q ss_pred HHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 100 ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 100 ~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.-........+..++|+.+++.+ +|+.+..
T Consensus 89 ~y~~~~~~~~~~gGwPl~vfltP---dg~p~~~ 118 (163)
T PF03190_consen 89 IYMNAVQAMSGSGGWPLTVFLTP---DGKPFFG 118 (163)
T ss_dssp HHHHHHHHHHS---SSEEEEE-T---TS-EEEE
T ss_pred HHHHHHHHhcCCCCCCceEEECC---CCCeeee
Confidence 00011112237789999999999 9998865
No 312
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.24 E-value=0.0014 Score=48.47 Aligned_cols=22 Identities=14% Similarity=0.439 Sum_probs=18.3
Q ss_pred EEEEecCCCcccHhhHHHHHHH
Q 015833 36 ALYFSANWYPPCGNFTGVLVDV 57 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l 57 (399)
++.||++||++|+...+.|.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 4678999999999998877553
No 313
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.17 E-value=0.0017 Score=52.73 Aligned_cols=73 Identities=21% Similarity=0.489 Sum_probs=45.2
Q ss_pred cCCCEEEEEEecC-------CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHH
Q 015833 30 LEGKVTALYFSAN-------WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 102 (399)
Q Consensus 30 ~~gk~vlv~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 102 (399)
-.|++++|.|.++ |||.|+.-.|.+++..+...+ +..+|.|.+... ..|+ +..
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r-~~Wk--------------dp~-- 76 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDR-PEWK--------------DPN-- 76 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---H-HHHC---------------TT--
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCH-HHhC--------------CCC--
Confidence 3568889999854 999999999999998887433 377777766322 2211 111
Q ss_pred HHHHh--hcCCCCcCeEEEEcC
Q 015833 103 KALNR--KFDIEGIPCLVVLQP 122 (399)
Q Consensus 103 ~~l~~--~~~v~~~P~~~lid~ 122 (399)
..... .++++++||++-++.
T Consensus 77 n~fR~~p~~~l~~IPTLi~~~~ 98 (119)
T PF06110_consen 77 NPFRTDPDLKLKGIPTLIRWET 98 (119)
T ss_dssp SHHHH--CC---SSSEEEECTS
T ss_pred CCceEcceeeeeecceEEEECC
Confidence 22333 699999999999986
No 314
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.16 E-value=0.0069 Score=45.10 Aligned_cols=58 Identities=24% Similarity=0.433 Sum_probs=39.8
Q ss_pred ecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCc
Q 015833 205 SARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG 284 (399)
Q Consensus 205 ~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~ 284 (399)
++++|+.|......++++.+.+. +++-.+.. .+. .++ ..|||.+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~------------i~~ei~~~-~~~----------------------~~~-~~ygv~~ 49 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG------------IEVEIIDI-EDF----------------------EEI-EKYGVMS 49 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT------------EEEEEEET-TTH----------------------HHH-HHTT-SS
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC------------CeEEEEEc-cCH----------------------HHH-HHcCCCC
Confidence 57789999988877777766652 44433443 232 455 8999999
Q ss_pred cceEEEECCCCcEEecc
Q 015833 285 IPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 285 ~P~~~lid~~G~i~~~~ 301 (399)
+|++ ++ ||+++..+
T Consensus 50 vPal-vI--ng~~~~~G 63 (76)
T PF13192_consen 50 VPAL-VI--NGKVVFVG 63 (76)
T ss_dssp SSEE-EE--TTEEEEES
T ss_pred CCEE-EE--CCEEEEEe
Confidence 9999 55 58887663
No 315
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.06 E-value=0.0049 Score=46.93 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=45.1
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
+..|+.+||++|......|+++..++. ++.+..|+++.+..+ ..++.+.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~-----------~i~~~~idi~~~~~~-------------------~~el~~~~ 52 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD-----------DFDYRYVDIHAEGIS-------------------KADLEKTV 52 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc-----------CCcEEEEECCCChHH-------------------HHHHHHHH
Confidence 567889999999999999998876542 467777777754321 12333333
Q ss_pred --CCCccceEEEECCCCcEEe
Q 015833 281 --DVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 281 --~v~~~P~~~lid~~G~i~~ 299 (399)
++..+|+++ + +|+.+.
T Consensus 53 ~~~~~~vP~if-i--~g~~ig 70 (85)
T PRK11200 53 GKPVETVPQIF-V--DQKHIG 70 (85)
T ss_pred CCCCCcCCEEE-E--CCEEEc
Confidence 458899976 4 566653
No 316
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.05 E-value=0.0041 Score=55.44 Aligned_cols=95 Identities=18% Similarity=0.185 Sum_probs=56.5
Q ss_pred eeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--C--------------HHH
Q 015833 190 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR--D--------------QTS 253 (399)
Q Consensus 190 ~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~--~--------------~~~ 253 (399)
+.+..-.+++.++.|..+.||+|+++.+.+.+ ... +-.+.++.+.... . .+.
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~--------~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a 137 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP----NAD--------GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKA 137 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh----ccC--------ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHH
Confidence 33333347889999999999999999988776 111 1134555555432 1 112
Q ss_pred HHHHHhcCCC-ccc---ccCCchhHHHHHhCCCCccceEEEECCCCcEE
Q 015833 254 FESYFGTMPW-LAL---PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 254 ~~~~~~~~~~-~~~---p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
|.++.....- ... ....+.+..+++.+||+++|+++ + ++|+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 138 WTDAMSGGKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred HHHHHhCCCCCCCccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 3222222111 011 12233677899999999999997 5 457764
No 317
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=96.93 E-value=0.0005 Score=45.14 Aligned_cols=31 Identities=32% Similarity=0.775 Sum_probs=28.2
Q ss_pred ecCCCCCCCCceeEEcCCC-CCCCcCcccccc
Q 015833 361 ICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAV 391 (399)
Q Consensus 361 ~c~~C~~~~~~w~~~c~~c-~~~~~~~~~~~~ 391 (399)
.|+.|++...+-+|+|.+| ||||+..|....
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~~ 33 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAKG 33 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCcC
Confidence 6999999999999999999 899999998653
No 318
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.89 E-value=0.009 Score=53.27 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=56.5
Q ss_pred EeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh----------------HHHHHhHhc
Q 015833 25 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL----------------NAFNNYRAC 88 (399)
Q Consensus 25 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~----------------~~~~~~~~~ 88 (399)
+.+..-.++..++.|+.+.||+|+++.+.+.+ ...+-.+.++.+...... +.+.+....
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~-----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~ 144 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP-----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSG 144 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh-----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhC
Confidence 33333357899999999999999999998876 122323555555543211 112222221
Q ss_pred CCC---cccccCChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCee
Q 015833 89 MPW---LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 89 ~~~---~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
..- ......+...+..+++.+||.++|+++ ++ +|+.+
T Consensus 145 ~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~----~G~~~ 184 (197)
T cd03020 145 GKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-LA----DGRVV 184 (197)
T ss_pred CCCCCCccccCchHHHHHHHHHHcCCCcccEEE-EC----CCeEe
Confidence 110 001111334567899999999999997 44 56553
No 319
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.79 E-value=0.065 Score=55.23 Aligned_cols=69 Identities=12% Similarity=0.201 Sum_probs=47.7
Q ss_pred ccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 194 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 194 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
.+.+..-+..|..+.||+|......++++.... +++..-.| |... .
T Consensus 113 ~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-----------~~i~~~~i--d~~~---------------------~ 158 (517)
T PRK15317 113 ALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN-----------PNITHTMI--DGAL---------------------F 158 (517)
T ss_pred hcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-----------CCceEEEE--Echh---------------------C
Confidence 344556688899999999998777776666532 24444444 5433 3
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEe
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~~ 299 (399)
++++..|++.++|++++ +|+.+.
T Consensus 159 ~~~~~~~~v~~VP~~~i---~~~~~~ 181 (517)
T PRK15317 159 QDEVEARNIMAVPTVFL---NGEEFG 181 (517)
T ss_pred HhHHHhcCCcccCEEEE---CCcEEE
Confidence 78999999999999976 344443
No 320
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.79 E-value=0.0011 Score=59.75 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=57.8
Q ss_pred ccccccCCeEEecCCCCE-EeccccC--CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEE
Q 015833 7 YVQQLRRRMTSTKEIGEE-VKVSDLE--GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 73 (399)
Q Consensus 7 ~~~~~~p~f~l~d~~G~~-v~l~~~~--gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~V 73 (399)
..|..|||..+...+|+. .++.|+. ++|++|+|.+-.||+=+.-++.+++++++|.+. .++.+|.|
T Consensus 74 ~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI 142 (237)
T PF00837_consen 74 KLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYI 142 (237)
T ss_pred eCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhH
Confidence 458899999999999998 9999984 789999999999999999999999999999874 24666655
No 321
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.70 E-value=0.012 Score=47.67 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=48.2
Q ss_pred ccCCCEEEEEEecC----CCcccHhhH--HHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHH
Q 015833 29 DLEGKVTALYFSAN----WYPPCGNFT--GVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 102 (399)
Q Consensus 29 ~~~gk~vlv~F~a~----wC~~C~~~~--p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 102 (399)
.-++|.++|+++++ ||..|+..+ |.+.+ -+.+ ++.+++.++... +.
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~---~ln~---~fv~w~~dv~~~---------------------eg- 65 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIE---YINT---RMLFWACSVAKP---------------------EG- 65 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHH---HHHc---CEEEEEEecCCh---------------------HH-
Confidence 44789999999999 888997765 44443 3322 377766666433 11
Q ss_pred HHHHhhcCCCCcCeEEEEcC
Q 015833 103 KALNRKFDIEGIPCLVVLQP 122 (399)
Q Consensus 103 ~~l~~~~~v~~~P~~~lid~ 122 (399)
.+++..+++..+|++.++.+
T Consensus 66 ~~la~~l~~~~~P~~~~l~~ 85 (116)
T cd02991 66 YRVSQALRERTYPFLAMIML 85 (116)
T ss_pred HHHHHHhCCCCCCEEEEEEe
Confidence 77899999999999999965
No 322
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.67 E-value=0.012 Score=41.49 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=38.5
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|+.+|||+|......|+ +. ++..-.+.++.+.+. ..++.+..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~-------~~---------~i~y~~~dv~~~~~~-------------------~~~l~~~~ 45 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD-------EK---------GIPYEEVDVDEDEEA-------------------REELKELS 45 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH-------HT---------TBEEEEEEGGGSHHH-------------------HHHHHHHH
T ss_pred cEEEEcCCCcCHHHHHHHHH-------Hc---------CCeeeEcccccchhH-------------------HHHHHHHc
Confidence 46788999999998766552 22 577777777765421 24455555
Q ss_pred CCCccceEEE
Q 015833 281 DVQGIPCLVI 290 (399)
Q Consensus 281 ~v~~~P~~~l 290 (399)
|...+|++++
T Consensus 46 g~~~~P~v~i 55 (60)
T PF00462_consen 46 GVRTVPQVFI 55 (60)
T ss_dssp SSSSSSEEEE
T ss_pred CCCccCEEEE
Confidence 8999999986
No 323
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.58 E-value=0.011 Score=55.13 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=53.9
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
+.+|||.||-+.++.|..+...|..|+.+|. .++++.|..... . +
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-----------~vKFvkI~a~~~-----------------------~-~ 190 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYP-----------EVKFVKIRASKC-----------------------P-A 190 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-----------TSEEEEEEECGC-----------------------C-T
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-----------ceEEEEEehhcc-----------------------C-c
Confidence 4589999999999999999999999999987 467887776532 1 4
Q ss_pred HHhCCCCccceEEEECCCCcEEecccc
Q 015833 277 TKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 277 ~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
...|....+|+++++ ++|.++....+
T Consensus 191 ~~~f~~~~LPtllvY-k~G~l~~~~V~ 216 (265)
T PF02114_consen 191 SENFPDKNLPTLLVY-KNGDLIGNFVG 216 (265)
T ss_dssp TTTS-TTC-SEEEEE-ETTEEEEEECT
T ss_pred ccCCcccCCCEEEEE-ECCEEEEeEEe
Confidence 566889999999999 89998877543
No 324
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0023 Score=56.38 Aligned_cols=92 Identities=22% Similarity=0.326 Sum_probs=60.7
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
-+.+..+|.|||.|.+-|+...|.+.++..+|..++ +.+-.|++.+- ...+.+|
T Consensus 142 nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDiGrf------------------------pd~a~kf 195 (265)
T KOG0914|consen 142 NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDIGRF------------------------PDVAAKF 195 (265)
T ss_pred CCceEEEEEEEeecChhhcccccccHHHHHHhCCCC--CcccceeeccC------------------------cChHHhe
Confidence 355688999999999999999999999999998876 55444543221 2334555
Q ss_pred CC------CCcCeEEEEcCCCCCCCeeeccchhhhhhc-CCCCCCCChHHH
Q 015833 110 DI------EGIPCLVVLQPYDDKDDATLHDGVELIYKY-GIRAFPFTKEKL 153 (399)
Q Consensus 110 ~v------~~~P~~~lid~~~~~G~i~~~~~~~~i~~~-g~~~~p~~~~~~ 153 (399)
+| +..||++++. +|+-+.+.. .+... ....++++++..
T Consensus 196 ris~s~~srQLPT~ilFq----~gkE~~RrP--~vd~~gra~s~~fSeenv 240 (265)
T KOG0914|consen 196 RISLSPGSRQLPTYILFQ----KGKEVSRRP--DVDVKGRAVSFPFSEENV 240 (265)
T ss_pred eeccCcccccCCeEEEEc----cchhhhcCc--cccccCCcccccccHHHH
Confidence 55 5789999998 565544321 12222 122366666543
No 325
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.45 E-value=0.0074 Score=46.25 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=48.7
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC--CC-----HHHHHHHHh-cCCCcccccCCc-
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--RD-----QTSFESYFG-TMPWLALPFGDP- 271 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d--~~-----~~~~~~~~~-~~~~~~~p~~~d- 271 (399)
+..|+.+.||+|....+.+.++...... ++++..+.+. .. ....+.... ........+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 70 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG----------GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL 70 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC----------cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHH
Confidence 3578899999999999999988744332 4667666653 22 111111110 000000000000
Q ss_pred hhHHHHHhCCCCccceEEEEC
Q 015833 272 TIKELTKYFDVQGIPCLVIIG 292 (399)
Q Consensus 272 ~~~~~~~~~~v~~~P~~~lid 292 (399)
.+...++.+|+.++|++++-|
T Consensus 71 ~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 71 ADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHHHcCCCCCCEEEECC
Confidence 467788999999999998876
No 326
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.45 E-value=0.0084 Score=44.63 Aligned_cols=58 Identities=21% Similarity=0.448 Sum_probs=38.7
Q ss_pred EecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCeEE
Q 015833 39 FSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLV 118 (399)
Q Consensus 39 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~ 118 (399)
+++++|++|......++++.+.++ .+++++-+ .+. .++ .+|||.++|+++
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~---i~~ei~~~-----------------------~~~---~~~-~~ygv~~vPalv 54 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG---IEVEIIDI-----------------------EDF---EEI-EKYGVMSVPALV 54 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT---EEEEEEET-----------------------TTH---HHH-HHTT-SSSSEEE
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC---CeEEEEEc-----------------------cCH---HHH-HHcCCCCCCEEE
Confidence 357889999998888888887763 12444321 022 566 999999999995
Q ss_pred EEcCCCCCCCeeec
Q 015833 119 VLQPYDDKDDATLH 132 (399)
Q Consensus 119 lid~~~~~G~i~~~ 132 (399)
+ ||+++..
T Consensus 55 -I-----ng~~~~~ 62 (76)
T PF13192_consen 55 -I-----NGKVVFV 62 (76)
T ss_dssp -E-----TTEEEEE
T ss_pred -E-----CCEEEEE
Confidence 4 4555544
No 327
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.39 E-value=0.22 Score=51.28 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=44.1
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
..+.+..-+..|..+.||+|+.....++++.... +++..-. +|...
T Consensus 113 ~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-----------p~i~~~~--id~~~--------------------- 158 (515)
T TIGR03140 113 RRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN-----------PNISHTM--IDGAL--------------------- 158 (515)
T ss_pred HhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-----------CCceEEE--EEchh---------------------
Confidence 3344566788899999999987666665555442 2344333 44332
Q ss_pred hHHHHHhCCCCccceEEE
Q 015833 273 IKELTKYFDVQGIPCLVI 290 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~l 290 (399)
.+++++.|++.++|++++
T Consensus 159 ~~~~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 159 FQDEVEALGIQGVPAVFL 176 (515)
T ss_pred CHHHHHhcCCcccCEEEE
Confidence 378899999999999976
No 328
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.35 E-value=0.014 Score=54.09 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=54.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEe--c-C-------------CCh-HHHHHhHhcCCCc-
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS--S-D-------------EDL-NAFNNYRACMPWL- 92 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs--~-D-------------~~~-~~~~~~~~~~~~~- 92 (399)
.+|.+++.|+-+.||+|+++.+.+.++.+. | ++++..+. + . .++ ..+..+.......
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~ 190 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS----G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLG 190 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc----C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccC
Confidence 568889999999999999999888775543 2 24443332 2 1 111 1222222111100
Q ss_pred -cccc--C-----ChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCe
Q 015833 93 -AVPY--S-----DLETKKALNRKFDIEGIPCLVVLQPYDDKDDA 129 (399)
Q Consensus 93 -~~~~--~-----d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i 129 (399)
..+- + ....+.++.+.+|++++|++++.|. +|.+
T Consensus 191 ~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~---~G~~ 232 (251)
T PRK11657 191 LKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDK---DGTL 232 (251)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC---CCCE
Confidence 0000 0 0113467888999999999999998 8874
No 329
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.35 E-value=0.033 Score=51.03 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=52.1
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCC----C---------------hHHHHHhHhcCC
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE----D---------------LNAFNNYRACMP 90 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~----~---------------~~~~~~~~~~~~ 90 (399)
-+||.+++.|.-+.||+|+++.+.+.++.+ .+ +++..+..-. + ..++.+......
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~--v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~ 178 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA----LG--ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKD 178 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhc----CC--eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCC
Confidence 367899999999999999999988776533 33 5555543211 1 111222222111
Q ss_pred Ccc-cccCChHHHHHHHhhcCCCCcCeEEEE
Q 015833 91 WLA-VPYSDLETKKALNRKFDIEGIPCLVVL 120 (399)
Q Consensus 91 ~~~-~~~~d~~~~~~l~~~~~v~~~P~~~li 120 (399)
... ....+...+.++++++||+++|++++-
T Consensus 179 ~~~~~c~~~v~~~~~la~~lgi~gTPtiv~~ 209 (232)
T PRK10877 179 VSPASCDVDIADHYALGVQFGVQGTPAIVLS 209 (232)
T ss_pred CCcccccchHHHhHHHHHHcCCccccEEEEc
Confidence 100 111234466899999999999999953
No 330
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.34 E-value=0.37 Score=41.77 Aligned_cols=68 Identities=29% Similarity=0.435 Sum_probs=47.1
Q ss_pred CcE-EEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 197 GKT-VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 197 gk~-vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+++ +++.|..............|.+++++++++ +.++.+..+.. ..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~----------~~f~~~d~~~~-----------------------~~ 140 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK----------INFVYVDADDF-----------------------PR 140 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT----------SEEEEEETTTT-----------------------HH
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe----------EEEEEeehHHh-----------------------HH
Confidence 344 777776555666666777777777777654 56666666633 56
Q ss_pred HHHhCCCC--ccceEEEECCCCcE
Q 015833 276 LTKYFDVQ--GIPCLVIIGPEGKT 297 (399)
Q Consensus 276 ~~~~~~v~--~~P~~~lid~~G~i 297 (399)
+.+.||+. .+|++++++.....
T Consensus 141 ~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 141 LLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp HHHHTTTTTSSSSEEEEEETTTSE
T ss_pred HHHHcCCCCccCCEEEEEECCCCc
Confidence 78889997 89999999855443
No 331
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=96.27 E-value=0.0025 Score=42.18 Aligned_cols=30 Identities=37% Similarity=1.005 Sum_probs=26.3
Q ss_pred ecCCCCCCC-CceeEEcCCC-CCCCcCccccc
Q 015833 361 ICCDCDEQG-SGWAYQCLEC-GYEVHPKCVRA 390 (399)
Q Consensus 361 ~c~~C~~~~-~~w~~~c~~c-~~~~~~~~~~~ 390 (399)
.|+.|++.. .+-+|+|.+| ||||+..|...
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~ 33 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG 33 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence 699999655 4999999999 89999999864
No 332
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.22 E-value=0.023 Score=49.35 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=29.4
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHh
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQ 228 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~ 228 (399)
.+++.++.|+...||+|..+.+.+.++.+++..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 578899999999999999999999998888743
No 333
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=96.19 E-value=0.05 Score=48.31 Aligned_cols=112 Identities=19% Similarity=0.364 Sum_probs=79.5
Q ss_pred CCCCccc-CCCCCceeecccc-CCcE--EEEEEe-----cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 015833 176 HDRGYLL-GHPPDEKVPVSSL-VGKT--VGLYFS-----ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 246 (399)
Q Consensus 176 ~~p~f~l-~~~g~~~~~l~~~-~gk~--vll~F~-----a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is 246 (399)
-..++.+ +.+| +++|.++ .|+- ++..|- ..-|+.|...+..+......+.++ ++.++.||
T Consensus 45 v~~~Y~F~g~~G--~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r---------d~tfa~vS 113 (211)
T PF05988_consen 45 VDKDYVFDGPDG--PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR---------DTTFAVVS 113 (211)
T ss_pred CCCCeEEeCCCC--cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC---------CceEEEEe
Confidence 3455777 5666 4888885 5653 333333 235999999999997777777765 78899998
Q ss_pred cCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCC-----CccceEEEECCC-CcEEec
Q 015833 247 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV-----QGIPCLVIIGPE-GKTVTK 300 (399)
Q Consensus 247 ~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v-----~~~P~~~lid~~-G~i~~~ 300 (399)
-. ..+++..|.+.|+|- +|..+.....+...|++ ...|.+-+|=++ |+|...
T Consensus 114 ra-P~~~i~afk~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhT 171 (211)
T PF05988_consen 114 RA-PLEKIEAFKRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHT 171 (211)
T ss_pred CC-CHHHHHHHHHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEEE
Confidence 65 678899999999997 99988877788888887 556655444344 555443
No 334
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.18 E-value=0.034 Score=46.01 Aligned_cols=77 Identities=12% Similarity=0.272 Sum_probs=55.3
Q ss_pred ecccc--CCCEEEEEEecC--CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHH
Q 015833 26 KVSDL--EGKVTALYFSAN--WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLET 101 (399)
Q Consensus 26 ~l~~~--~gk~vlv~F~a~--wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~ 101 (399)
++.++ .+...+|+|-.. -+|-+....-.|.+++++|.+. ++.++.|++|..
T Consensus 26 ~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~--~v~~akVDiD~~----------------------- 80 (132)
T PRK11509 26 RLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY--TWQVAIADLEQS----------------------- 80 (132)
T ss_pred cHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC--ceEEEEEECCCC-----------------------
Confidence 44554 233556666522 3455666677888888898533 388888877644
Q ss_pred HHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 102 KKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 102 ~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.+++.+|+|.++|+++++. +|+.+..
T Consensus 81 -~~LA~~fgV~siPTLl~Fk----dGk~v~~ 106 (132)
T PRK11509 81 -EAIGDRFGVFRFPATLVFT----GGNYRGV 106 (132)
T ss_pred -HHHHHHcCCccCCEEEEEE----CCEEEEE
Confidence 8999999999999999998 8888855
No 335
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.08 E-value=0.015 Score=43.60 Aligned_cols=57 Identities=21% Similarity=0.273 Sum_probs=38.7
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|.++|||+|....+.|.++.. +++++-|+.+... ......+.+.++...+|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~-------------------~~~~~~~~~~~g~~~~P 55 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDG-------------------SEIQDYLQELTGQRTVP 55 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCCh-------------------HHHHHHHHHHhCCCCCC
Confidence 477889999999999888777433 2566666554331 11224566777888999
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
.++
T Consensus 56 ~v~ 58 (82)
T cd03419 56 NVF 58 (82)
T ss_pred eEE
Confidence 974
No 336
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.00 E-value=0.022 Score=43.53 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=49.4
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC--CC-----hHHHHHhHh-cCCCcccccCChHHHHHHHh
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD--ED-----LNAFNNYRA-CMPWLAVPYSDLETKKALNR 107 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D--~~-----~~~~~~~~~-~~~~~~~~~~d~~~~~~l~~ 107 (399)
+..|+.+.||+|....+.+.++.....+ ++.+..+.+. .. ......... ........+.+.-....+.+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 3678899999999999999998744332 3666666542 21 111111111 00000011111113477888
Q ss_pred hcCCCCcCeEEEEc
Q 015833 108 KFDIEGIPCLVVLQ 121 (399)
Q Consensus 108 ~~~v~~~P~~~lid 121 (399)
.+|+.++|++++-+
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 99999999999876
No 337
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.98 E-value=0.016 Score=43.44 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=40.9
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|.++|||+|......|.++.. .++++-|+.+.+..+. ...+.+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~--------------~~~~~~v~~~~~~~~~------------------~~~~~~~~ 49 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV--------------KPAVVELDQHEDGSEI------------------QDYLQELT 49 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC--------------CcEEEEEeCCCChHHH------------------HHHHHHHh
Confidence 467889999999988777776432 2456666665442221 13456667
Q ss_pred CCCccceEEEECCCCcEE
Q 015833 281 DVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~ 298 (399)
|..++|.+ ++ +|+.+
T Consensus 50 g~~~~P~v-~~--~g~~i 64 (82)
T cd03419 50 GQRTVPNV-FI--GGKFI 64 (82)
T ss_pred CCCCCCeE-EE--CCEEE
Confidence 88999997 44 35544
No 338
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.0091 Score=53.15 Aligned_cols=70 Identities=20% Similarity=0.367 Sum_probs=54.1
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+++.+++.||++||.+|.++...+..+.+.++ + +.++ +.+.+. ..+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~-~----------~~~~--k~~a~~---------------------~~e 61 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK-N----------AQFL--KLEAEE---------------------FPE 61 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh-h----------heee--eehhhh---------------------hhH
Confidence 56889999999999999998888887777663 2 3444 444333 378
Q ss_pred HHHhCCCCccceEEEECCCCcEEec
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
++..+.+.+.|.++++ ..|+.+.+
T Consensus 62 is~~~~v~~vp~~~~~-~~~~~v~~ 85 (227)
T KOG0911|consen 62 ISNLIAVEAVPYFVFF-FLGEKVDR 85 (227)
T ss_pred HHHHHHHhcCceeeee-ecchhhhh
Confidence 9999999999999888 77776665
No 339
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=95.81 E-value=0.094 Score=47.24 Aligned_cols=116 Identities=9% Similarity=0.124 Sum_probs=78.8
Q ss_pred CCCCcccCCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 015833 176 HDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 255 (399)
Q Consensus 176 ~~p~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 255 (399)
+.|.+++ +| ...+.+..|+++||.+-..+|..|...+..|+.|..++... +..++.++.|+--.....++
T Consensus 9 ~~p~W~i--~~--~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~------g~~~I~f~vVN~~~~~s~~~ 78 (238)
T PF04592_consen 9 PPPPWKI--GG--QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENE------GLSNISFMVVNHQGEHSRLK 78 (238)
T ss_pred CCCCceE--CC--chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHC------CCCceEEEEEcCCCcchhHH
Confidence 3455553 22 24456788999999999999999999999999999999865 24567777777432222222
Q ss_pred -HHHhcCCCcccccCC-c-hhHHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 256 -SYFGTMPWLALPFGD-P-TIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 256 -~~~~~~~~~~~p~~~-d-~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
..++..--..+|+.. + ....+...++-..- -++|+|+=|++++.-+
T Consensus 79 ~~~l~~r~~~~ipVyqq~~~q~dvW~~L~G~kd-D~~iyDRCGrL~~~i~ 127 (238)
T PF04592_consen 79 YWELKRRVSEHIPVYQQDENQPDVWELLNGSKD-DFLIYDRCGRLTYHIP 127 (238)
T ss_pred HHHHHHhCCCCCceecCCccccCHHHHhCCCcC-cEEEEeccCcEEEEec
Confidence 223322224477764 3 45677777775543 6889999999998743
No 340
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.038 Score=46.07 Aligned_cols=117 Identities=17% Similarity=0.222 Sum_probs=76.6
Q ss_pred hhhcCCCCccc-CC------CCCceeeccc-cCCcEEEEEEecC--CChhhhh-hHHHHHHHHHHHHhhhhhcCCCCCCE
Q 015833 172 LLTNHDRGYLL-GH------PPDEKVPVSS-LVGKTVGLYFSAR--WCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDF 240 (399)
Q Consensus 172 ~~g~~~p~f~l-~~------~g~~~~~l~~-~~gk~vll~F~a~--wC~~C~~-~~~~l~~l~~~~~~~~~~~~~~~~~~ 240 (399)
.+|+..|+.++ .. .|-..++..+ ++||.|+| |..| ..|.|.. .+|.+.+++++|+.+ ++
T Consensus 4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~k---------GV 73 (165)
T COG0678 4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAK---------GV 73 (165)
T ss_pred ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHc---------CC
Confidence 45777777766 32 1221334444 46776655 5544 6788877 899999999999976 44
Q ss_pred -EEEEEecCCC--HHHHHHHHhcCCCcccccCCchhHHHHHhCCC-----------CccceEEEECCCCcEEecc
Q 015833 241 -EVVFVSTDRD--QTSFESYFGTMPWLALPFGDPTIKELTKYFDV-----------QGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 241 -~vv~is~d~~--~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~ 301 (399)
+|+.||+++. -.+|.+.....+ .+.+..|.+.++.+.+|. ++.....|+ +||.+..-+
T Consensus 74 D~I~cVSVND~FVm~AWak~~g~~~--~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 74 DEIYCVSVNDAFVMNAWAKSQGGEG--NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred ceEEEEEeCcHHHHHHHHHhcCCCc--cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence 5788888732 244555554443 566677777888887654 556667888 789887653
No 341
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.019 Score=45.88 Aligned_cols=72 Identities=19% Similarity=0.388 Sum_probs=47.5
Q ss_pred CCCEEEEEEec--------CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHH
Q 015833 31 EGKVTALYFSA--------NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 102 (399)
Q Consensus 31 ~gk~vlv~F~a--------~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 102 (399)
+|+.++|.|.+ +|||.|.+-.|.+.+..+.. ++++.+|.|.+.+.+. |... .
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a---p~~~~~v~v~VG~rp~----------Wk~p-----~-- 83 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA---PEDVHFVHVYVGNRPY----------WKDP-----A-- 83 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC---CCceEEEEEEecCCCc----------ccCC-----C--
Confidence 67789999985 59999999999998877743 3347777776532210 2111 0
Q ss_pred HHHHhhcCC-CCcCeEEEEcC
Q 015833 103 KALNRKFDI-EGIPCLVVLQP 122 (399)
Q Consensus 103 ~~l~~~~~v-~~~P~~~lid~ 122 (399)
..+....++ .++||++=.+.
T Consensus 84 n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 84 NPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred CccccCCCceeecceeeEEcC
Confidence 233344555 88999987763
No 342
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.68 E-value=0.054 Score=39.07 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=35.5
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|+++||++|......|.+ . ++.+..+.+|.+... ...+.+..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~---------~i~~~~~~i~~~~~~-------------------~~~~~~~~ 46 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------R---------GIPFEEVDVDEDPEA-------------------LEELKKLN 46 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------C---------CCCeEEEeCCCCHHH-------------------HHHHHHHc
Confidence 467889999999986665543 2 355666777654321 12334444
Q ss_pred CCCccceEEE
Q 015833 281 DVQGIPCLVI 290 (399)
Q Consensus 281 ~v~~~P~~~l 290 (399)
++..+|++++
T Consensus 47 ~~~~vP~i~~ 56 (73)
T cd02976 47 GYRSVPVVVI 56 (73)
T ss_pred CCcccCEEEE
Confidence 7899999865
No 343
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.66 E-value=0.043 Score=57.08 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=49.0
Q ss_pred cccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 193 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 193 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
..+++.+.|+.|+.+.|..|......|+++. ++. +.+++..+..+.+
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s----------~~i~~~~~~~~~~---------------------- 408 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLS----------EKLNSEAVNRGEE---------------------- 408 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcC----------CcEEEEEeccccc----------------------
Confidence 3466777888999888988887666555555 222 2355555443322
Q ss_pred hHHHHHhCCCCccceEEEECCCCc
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGK 296 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~ 296 (399)
.++++.|++...|++.|++.+|.
T Consensus 409 -~~~~~~~~v~~~P~~~i~~~~~~ 431 (555)
T TIGR03143 409 -PESETLPKITKLPTVALLDDDGN 431 (555)
T ss_pred -hhhHhhcCCCcCCEEEEEeCCCc
Confidence 67888999999999999976663
No 344
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.57 E-value=0.058 Score=38.87 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=34.6
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|+++||++|......|.+ .+ +.+..+++|.+.. ...++.+..++..+|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~--------------------~~~~~~~~~~~~~vP 52 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPE--------------------ALEELKKLNGYRSVP 52 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHH--------------------HHHHHHHHcCCcccC
Confidence 467889999999998776654 23 4444555554321 113444445778899
Q ss_pred eEEE
Q 015833 116 CLVV 119 (399)
Q Consensus 116 ~~~l 119 (399)
++++
T Consensus 53 ~i~~ 56 (73)
T cd02976 53 VVVI 56 (73)
T ss_pred EEEE
Confidence 8864
No 345
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.55 E-value=0.074 Score=37.30 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=38.0
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|+.+|||+|......|.+ .+ +..-.++++.+. ....++.+..+...+|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~~--i~y~~~dv~~~~--------------------~~~~~l~~~~g~~~~P 51 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------KG--IPYEEVDVDEDE--------------------EAREELKELSGVRTVP 51 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------TT--BEEEEEEGGGSH--------------------HHHHHHHHHHSSSSSS
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------cC--CeeeEcccccch--------------------hHHHHHHHHcCCCccC
Confidence 467889999999998877632 44 555556665442 2235666666999999
Q ss_pred eEEE
Q 015833 116 CLVV 119 (399)
Q Consensus 116 ~~~l 119 (399)
++++
T Consensus 52 ~v~i 55 (60)
T PF00462_consen 52 QVFI 55 (60)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
No 346
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=95.50 E-value=0.048 Score=41.37 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=30.0
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 78 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~ 78 (399)
++.|+.+|||+|.+....|+++..++ .+ +.+..|+++.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~--i~~~~idi~~~ 41 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DD--FDYRYVDIHAE 41 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cC--CcEEEEECCCC
Confidence 57789999999999999999988764 23 56666666543
No 347
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.50 E-value=0.055 Score=47.10 Aligned_cols=90 Identities=17% Similarity=0.177 Sum_probs=67.3
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+...|++.||-+.-..|+-+-..|+.|++.+- +..++-|++... +-
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-----------eTrFikvnae~~-----------------------PF 128 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-----------ETRFIKVNAEKA-----------------------PF 128 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhcc-----------cceEEEEecccC-----------------------ce
Confidence 45679999999999999999999999988764 345666665533 56
Q ss_pred HHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHH
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEF 323 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~ 323 (399)
+...++|..+|++.++ ++|+.+.+..|.. ..|... .|+.+.++.
T Consensus 129 lv~kL~IkVLP~v~l~-k~g~~~D~iVGF~--dLGnkD-dF~te~LE~ 172 (211)
T KOG1672|consen 129 LVTKLNIKVLPTVALF-KNGKTVDYVVGFT--DLGNKD-DFTTETLEN 172 (211)
T ss_pred eeeeeeeeEeeeEEEE-EcCEEEEEEeeHh--hcCCCC-cCcHHHHHH
Confidence 7889999999999999 9999887755543 455433 456655543
No 348
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.044 Score=43.87 Aligned_cols=71 Identities=20% Similarity=0.366 Sum_probs=46.6
Q ss_pred CcEEEEEEec--------CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 015833 197 GKTVGLYFSA--------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 268 (399)
Q Consensus 197 gk~vll~F~a--------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 268 (399)
|+.+.++|.+ +|||.|.+-.|.+.+..+.... ++.+|-|.+.. .+.|+
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~----------~~~~v~v~VG~-rp~Wk------------- 80 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE----------DVHFVHVYVGN-RPYWK------------- 80 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC----------ceEEEEEEecC-CCccc-------------
Confidence 4456777764 5999999999998888775543 57777777652 21111
Q ss_pred CCchhHHHHHhCCC-CccceEEEECC
Q 015833 269 GDPTIKELTKYFDV-QGIPCLVIIGP 293 (399)
Q Consensus 269 ~~d~~~~~~~~~~v-~~~P~~~lid~ 293 (399)
|.+..+....++ .++||++=.+.
T Consensus 81 --~p~n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 81 --DPANPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred --CCCCccccCCCceeecceeeEEcC
Confidence 122344444555 89999988864
No 349
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=95.28 E-value=0.086 Score=46.83 Aligned_cols=118 Identities=19% Similarity=0.306 Sum_probs=79.3
Q ss_pred cccccCCeEEecCCCCEEecccc-CCC--EEEEEEe-----cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 015833 8 VQQLRRRMTSTKEIGEEVKVSDL-EGK--VTALYFS-----ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 79 (399)
Q Consensus 8 ~~~~~p~f~l~d~~G~~v~l~~~-~gk--~vlv~F~-----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~ 79 (399)
.+....++.+...+|+ ++|.|+ .|+ .++-.|. ...|+-|...+-.+......+...+ +.++.||-. ..
T Consensus 42 ~v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd--~tfa~vSra-P~ 117 (211)
T PF05988_consen 42 MVEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARD--TTFAVVSRA-PL 117 (211)
T ss_pred CccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCC--ceEEEEeCC-CH
Confidence 3455567888888887 999986 665 4444443 3569999999999988788887775 777777654 45
Q ss_pred HHHHHhHhcCCCcccccCChHHHHHHHhhcCC-----CCcCeEEEEcCCCCCCCeeecc
Q 015833 80 NAFNNYRACMPWLAVPYSDLETKKALNRKFDI-----EGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v-----~~~P~~~lid~~~~~G~i~~~~ 133 (399)
+.+..|.+.|+|...=+|... ..+...|++ ...|.+-++-+ .+|+|.+..
T Consensus 118 ~~i~afk~rmGW~~pw~Ss~g--s~Fn~D~~~~~~~~~~~~g~svF~R--dg~~VfhTy 172 (211)
T PF05988_consen 118 EKIEAFKRRMGWTFPWYSSYG--SDFNYDFGVSFDEGGEMPGLSVFLR--DGGRVFHTY 172 (211)
T ss_pred HHHHHHHHhcCCCceEEEcCC--CcccccccceeccCCCceeEEEEEE--cCCEEEEEe
Confidence 788899999998732232221 456667777 45665555544 156666543
No 350
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=95.22 E-value=0.22 Score=46.14 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=78.2
Q ss_pred CCCCccc-CCCCCceeeccc-cCCcEEEEEEecC-CChhhhhhHHHHH-HHHHHHHhhhhhcCCCCCCEEEEEEecCCCH
Q 015833 176 HDRGYLL-GHPPDEKVPVSS-LVGKTVGLYFSAR-WCIPCEKFMPKLL-SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 251 (399)
Q Consensus 176 ~~p~f~l-~~~g~~~~~l~~-~~gk~vll~F~a~-wC~~C~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~ 251 (399)
..|++.- +.+|+ .+++.+ ++||+.||..+.+ |-..|. ..+. ...++|... .+..+++|-|++..+.
T Consensus 100 yFP~l~g~tL~g~-~~~~~~~l~gkvSlV~l~s~~~ge~~~---~sw~~p~~~~~~~~------~~~~~q~v~In~~e~~ 169 (252)
T PF05176_consen 100 YFPNLQGKTLAGN-KVDTTDLLRGKVSLVCLFSSAWGEEMV---DSWTSPFLEDFLQE------PYGRVQIVEINLIENW 169 (252)
T ss_pred cCCCCccccCCCC-CcccccccCCceEEEEEeehHHHHHHH---HHHhhHHHHHHhhC------CCCceEEEEEecchHH
Confidence 3588887 88888 777755 6899755555543 433332 2222 233444432 0127899999986432
Q ss_pred H-HH-HHHH-hc-------CCCcccccCCc--hhHHHHHhCCCC--ccceEEEECCCCcEEecccchhhhhhcccCCCCC
Q 015833 252 T-SF-ESYF-GT-------MPWLALPFGDP--TIKELTKYFDVQ--GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 317 (399)
Q Consensus 252 ~-~~-~~~~-~~-------~~~~~~p~~~d--~~~~~~~~~~v~--~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~ 317 (399)
- .+ ...+ .. ..|-.+-+..+ ....+.+.+++. -+..+||+|.+|+|+....| +.+
T Consensus 170 ~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG-----------~At 238 (252)
T PF05176_consen 170 LKSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSG-----------PAT 238 (252)
T ss_pred HHHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccC-----------CCC
Confidence 1 11 1111 11 11333323332 256777888874 45669999999999988544 347
Q ss_pred hHHHHHHHHHHH
Q 015833 318 EAKLEFLEKQME 329 (399)
Q Consensus 318 ~~~~~~l~~~~~ 329 (399)
++.++.|.+.+.
T Consensus 239 ~~E~~~L~k~~~ 250 (252)
T PF05176_consen 239 PEELESLWKCVK 250 (252)
T ss_pred HHHHHHHHHHHh
Confidence 778888877664
No 351
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.11 E-value=0.0064 Score=54.36 Aligned_cols=70 Identities=21% Similarity=0.395 Sum_probs=53.0
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh
Q 015833 200 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 279 (399)
Q Consensus 200 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~ 279 (399)
.++.|+++|||.|....|.|...+.--.+. ++.+..|.+-.+ .-+.-+
T Consensus 42 wmi~~~ap~~psc~~~~~~~~~~a~~s~dL---------~v~va~VDvt~n-----------------------pgLsGR 89 (248)
T KOG0913|consen 42 WMIEFGAPWCPSCSDLIPHLENFATVSLDL---------GVKVAKVDVTTN-----------------------PGLSGR 89 (248)
T ss_pred HHHHhcCCCCccccchHHHHhccCCccCCC---------ceeEEEEEEEec-----------------------ccccee
Confidence 678999999999999999998776543332 556665554433 456677
Q ss_pred CCCCccceEEEECCCCcEEeccc
Q 015833 280 FDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 280 ~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
|-+...|+++=+ ++|......|
T Consensus 90 F~vtaLptIYHv-kDGeFrrysg 111 (248)
T KOG0913|consen 90 FLVTALPTIYHV-KDGEFRRYSG 111 (248)
T ss_pred eEEEecceEEEe-eccccccccC
Confidence 888999999999 9998875544
No 352
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.08 E-value=0.16 Score=36.24 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=39.4
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|.++||++|+.....|.+. ++.+..++++.+.+. ...+.+..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~----------------~i~~~~~di~~~~~~-------------------~~~l~~~~ 46 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL----------------GIEFEEIDILEDGEL-------------------REELKELS 46 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----------------CCcEEEEECCCCHHH-------------------HHHHHHHh
Confidence 4568899999999877766643 345666666655421 24455566
Q ss_pred CCCccceEEEECCCCcEEe
Q 015833 281 DVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~~ 299 (399)
+...+|++++ +|+.+.
T Consensus 47 ~~~~~P~~~~---~~~~ig 62 (72)
T cd02066 47 GWPTVPQIFI---NGEFIG 62 (72)
T ss_pred CCCCcCEEEE---CCEEEe
Confidence 7788897754 565554
No 353
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.82 E-value=0.054 Score=41.32 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=18.7
Q ss_pred EEEEecCCChhhhhhHHHHHHHHH
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQ 224 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~ 224 (399)
++.|..+|||+|.+....|.++..
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~ 25 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAI 25 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCc
Confidence 466788999999988777766543
No 354
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.81 E-value=0.1 Score=38.98 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=39.3
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 015833 199 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 278 (399)
Q Consensus 199 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~ 278 (399)
.-++.|..+||++|......|.+ . ++.+..+.++.+.. ..++.+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~-------~---------gi~y~~idi~~~~~--------------------~~~~~~ 51 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKE-------K---------GYDFEEIPLGNDAR--------------------GRSLRA 51 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHH-------c---------CCCcEEEECCCChH--------------------HHHHHH
Confidence 34667889999999987666542 2 34555566664432 134455
Q ss_pred hCCCCccceEEEECCCCcEE
Q 015833 279 YFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 279 ~~~v~~~P~~~lid~~G~i~ 298 (399)
..|...+|.++ + +|+.+
T Consensus 52 ~~g~~~vP~i~-i--~g~~i 68 (79)
T TIGR02190 52 VTGATTVPQVF-I--GGKLI 68 (79)
T ss_pred HHCCCCcCeEE-E--CCEEE
Confidence 67889999986 4 45543
No 355
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.02 Score=51.08 Aligned_cols=63 Identities=19% Similarity=0.314 Sum_probs=52.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+++.+++.||++||.+|..+...+..+++.++ +++++.+ +.+...+++..+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~------------------------~a~~~~eis~~~~ 67 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKL------------------------EAEEFPEISNLIA 67 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeee------------------------hhhhhhHHHHHHH
Confidence 78899999999999999999999999888873 3666655 3333388999999
Q ss_pred CCCcCeEEEEc
Q 015833 111 IEGIPCLVVLQ 121 (399)
Q Consensus 111 v~~~P~~~lid 121 (399)
+...|.+.++.
T Consensus 68 v~~vp~~~~~~ 78 (227)
T KOG0911|consen 68 VEAVPYFVFFF 78 (227)
T ss_pred HhcCceeeeee
Confidence 99999999885
No 356
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=94.71 E-value=0.53 Score=39.90 Aligned_cols=119 Identities=13% Similarity=0.164 Sum_probs=70.3
Q ss_pred eeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHH-HHhhhhhcCCCCCCEEEEEE-ecCCC----HHHHHHHH----
Q 015833 189 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQK-IKQNLVEKGDALEDFEVVFV-STDRD----QTSFESYF---- 258 (399)
Q Consensus 189 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~vv~i-s~d~~----~~~~~~~~---- 258 (399)
.++.+.+.||+-+|...|-....=....|....+.+. |... .++...| +.|.. .-=++..+
T Consensus 29 ~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d---------~yqtttIiN~dDAi~gt~~fVrss~e~~k 99 (160)
T PF09695_consen 29 PWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD---------KYQTTTIINLDDAIWGTGGFVRSSAEDSK 99 (160)
T ss_pred ccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc---------ceeEEEEEecccccccchHHHHHHHHHhh
Confidence 4566678899988877765444433444555555443 4432 4665554 45431 11123333
Q ss_pred hcCCCcccccCCchhHHHHHhCCCCcc-ceEEEECCCCcEEecccchhhhhhcccCCCCChHHHHHHHHHHH
Q 015833 259 GTMPWLALPFGDPTIKELTKYFDVQGI-PCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQME 329 (399)
Q Consensus 259 ~~~~~~~~p~~~d~~~~~~~~~~v~~~-P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~~~ 329 (399)
++.||-.+ ..|.+..+.+.|+...- -.++++|++|+|++..-+ ..+++.++.....++
T Consensus 100 k~~p~s~~--vlD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G-----------~Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 100 KEFPWSQF--VLDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEG-----------ALSPAEVQQVIALLK 158 (160)
T ss_pred hhCCCcEE--EEcCCCceeccccCCCCCceEEEEcCCccEEEEECC-----------CCCHHHHHHHHHHHh
Confidence 34555444 34555677888887533 468899999999987544 457777776665554
No 357
>PHA03050 glutaredoxin; Provisional
Probab=94.67 E-value=0.067 Score=42.77 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=37.0
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|..+|||+|.+....|.+.-- ...+++++-|+-..+ +.....++.+..|-..+|
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i----~~~~~~~i~i~~~~~-------------------~~~~~~~l~~~tG~~tVP 71 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSF----KRGAYEIVDIKEFKP-------------------ENELRDYFEQITGGRTVP 71 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCC----CcCCcEEEECCCCCC-------------------CHHHHHHHHHHcCCCCcC
Confidence 567889999999987776655311 111355554431111 222346777777888899
Q ss_pred eEEE
Q 015833 116 CLVV 119 (399)
Q Consensus 116 ~~~l 119 (399)
.+++
T Consensus 72 ~IfI 75 (108)
T PHA03050 72 RIFF 75 (108)
T ss_pred EEEE
Confidence 9854
No 358
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.64 E-value=0.11 Score=44.20 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=39.7
Q ss_pred EeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 015833 25 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 75 (399)
Q Consensus 25 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~ 75 (399)
+.+-.-.++++++.|+...||+|..+.+.+.++.+++-+.| ++.++.+.+
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV 54 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence 45566678999999999999999999999999999984443 588887755
No 359
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.62 E-value=0.44 Score=35.83 Aligned_cols=54 Identities=15% Similarity=0.327 Sum_probs=34.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
+..|..+||++|......|.+ + ++.+-.|.++.+.+. .+..+..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~---------gI~~~~idi~~~~~~--------------------~~~~~~~ 46 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R---------GFDFEMINVDRVPEA--------------------AETLRAQ 46 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C---------CCceEEEECCCCHHH--------------------HHHHHHc
Confidence 456778999999986655532 2 566666777755432 1122334
Q ss_pred CCCccceEEE
Q 015833 281 DVQGIPCLVI 290 (399)
Q Consensus 281 ~v~~~P~~~l 290 (399)
|...+|++++
T Consensus 47 g~~~vPvv~i 56 (81)
T PRK10329 47 GFRQLPVVIA 56 (81)
T ss_pred CCCCcCEEEE
Confidence 7789999854
No 360
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=94.61 E-value=0.13 Score=40.47 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=15.2
Q ss_pred EEEEecCCChhhhhhHHHHH
Q 015833 201 GLYFSARWCIPCEKFMPKLL 220 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~ 220 (399)
++.|..+|||+|.+....|.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~ 29 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLL 29 (99)
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 55688899999997665444
No 361
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.56 E-value=0.06 Score=45.21 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=31.1
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEE
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 73 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~V 73 (399)
+++++++.|+.++||+|+.+.|.+.++...+. ++.++.+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP----DVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC----CceEEEE
Confidence 47899999999999999999999998776642 2555544
No 362
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=94.56 E-value=0.023 Score=37.85 Aligned_cols=33 Identities=24% Similarity=0.675 Sum_probs=29.3
Q ss_pred eecCCCCCCCCceeEEcCCCC-CCCcCccccccC
Q 015833 360 FICCDCDEQGSGWAYQCLECG-YEVHPKCVRAVD 392 (399)
Q Consensus 360 ~~c~~C~~~~~~w~~~c~~c~-~~~~~~~~~~~~ 392 (399)
+.|+.|.+.-.+=+|+|.+|. |||...|.....
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~ 34 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK 34 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence 469999998888999999998 999999987653
No 363
>PHA03050 glutaredoxin; Provisional
Probab=94.49 E-value=0.057 Score=43.16 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=16.4
Q ss_pred EEEEecCCChhhhhhHHHHHH
Q 015833 201 GLYFSARWCIPCEKFMPKLLS 221 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~ 221 (399)
++.|..+|||+|......|.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~ 35 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNK 35 (108)
T ss_pred EEEEECCCChHHHHHHHHHHH
Confidence 567889999999876665554
No 364
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.29 E-value=0.099 Score=46.37 Aligned_cols=93 Identities=18% Similarity=0.371 Sum_probs=68.2
Q ss_pred CCCccc-CCCCCceeecccc-CCcE--EEE-EEecC----CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 177 DRGYLL-GHPPDEKVPVSSL-VGKT--VGL-YFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 177 ~p~f~l-~~~g~~~~~l~~~-~gk~--vll-~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
.-++.+ +.+|+ .+|.++ .|+- +|- ++++| -|+.|..++..+.-....+... ++.++.||-
T Consensus 52 ~K~Y~Fe~~~G~--~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~---------dv~lv~VsR 120 (247)
T COG4312 52 DKDYVFETENGK--KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH---------DVTLVAVSR 120 (247)
T ss_pred cceeEeecCCcc--hhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc---------CceEEEEec
Confidence 455667 66664 788875 4553 222 23355 4999999999988777777654 788999985
Q ss_pred CCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCC
Q 015833 248 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV 282 (399)
Q Consensus 248 d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v 282 (399)
- ..+++..+-+.|+|- ||..+.....+.+.|.+
T Consensus 121 A-Pl~~l~~~k~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 121 A-PLEELVAYKRRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred C-cHHHHHHHHHhcCCc-ceeEeccCccccccccc
Confidence 4 678889999999997 98888877777777765
No 365
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.29 E-value=0.17 Score=37.83 Aligned_cols=56 Identities=14% Similarity=0.324 Sum_probs=36.1
Q ss_pred EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCC
Q 015833 34 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 113 (399)
Q Consensus 34 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 113 (399)
.-++.|..+||++|++....|.+ .| +....++++.+.+. .++.+..+...
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~-------~g--i~y~~idi~~~~~~---------------------~~~~~~~g~~~ 57 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKE-------KG--YDFEEIPLGNDARG---------------------RSLRAVTGATT 57 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHH-------cC--CCcEEEECCCChHH---------------------HHHHHHHCCCC
Confidence 34567889999999998887753 33 33444555433111 34555678889
Q ss_pred cCeEEE
Q 015833 114 IPCLVV 119 (399)
Q Consensus 114 ~P~~~l 119 (399)
+|.+++
T Consensus 58 vP~i~i 63 (79)
T TIGR02190 58 VPQVFI 63 (79)
T ss_pred cCeEEE
Confidence 998863
No 366
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.28 E-value=0.23 Score=36.28 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=36.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
+..|..++||+|......|++ . ++.+-.+.++.+.+.. .++.+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~---------~i~~~~i~i~~~~~~~-------------------~~~~~~~ 46 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------K---------GVDYEEIDVDGDPALR-------------------EEMINRS 46 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------C---------CCcEEEEECCCCHHHH-------------------HHHHHHh
Confidence 456788999999987666543 2 3555666666553322 3344455
Q ss_pred CCC-ccceEEEECCCCcEE
Q 015833 281 DVQ-GIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~-~~P~~~lid~~G~i~ 298 (399)
+.. .+|.+ ++ +|+.+
T Consensus 47 ~~~~~vP~v-~i--~g~~i 62 (75)
T cd03418 47 GGRRTVPQI-FI--GDVHI 62 (75)
T ss_pred CCCCccCEE-EE--CCEEE
Confidence 655 88976 45 35544
No 367
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.12 E-value=0.17 Score=37.62 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=36.6
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCC
Q 015833 202 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 281 (399)
Q Consensus 202 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~ 281 (399)
..|+.+|||+|......|++ . ++.+-.++++.+.+.. .++.+..|
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~---------~i~~~~~di~~~~~~~-------------------~~~~~~~g 46 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------K---------GVTFTEIRVDGDPALR-------------------DEMMQRSG 46 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------c---------CCCcEEEEecCCHHHH-------------------HHHHHHhC
Confidence 46788999999987766653 1 3444445555543221 34555567
Q ss_pred CCccceEEEECCCCcEE
Q 015833 282 VQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 282 v~~~P~~~lid~~G~i~ 298 (399)
...+|++ ++ +|+.+
T Consensus 47 ~~~vP~i-~i--~g~~i 60 (79)
T TIGR02181 47 RRTVPQI-FI--GDVHV 60 (79)
T ss_pred CCCcCEE-EE--CCEEE
Confidence 8899997 44 35443
No 368
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=94.00 E-value=0.22 Score=39.04 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=34.0
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|..+|||+|.+....|.+. +.++.+ +++|.+.+. ......+.+..+...+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~--vdid~~~~~-----------------~~~~~~l~~~tg~~tvP 63 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-------GVNPAV--HEIDKEPAG-----------------KDIENALSRLGCSPAVP 63 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCCEE--EEcCCCccH-----------------HHHHHHHHHhcCCCCcC
Confidence 4567889999999877765542 323444 445433211 11224555666778899
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
.++
T Consensus 64 ~Vf 66 (99)
T TIGR02189 64 AVF 66 (99)
T ss_pred eEE
Confidence 874
No 369
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=93.97 E-value=0.1 Score=43.78 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=26.6
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKI 226 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~ 226 (399)
++++++.|+.++||+|..+.|.+.++..++
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 678999999999999999999998877655
No 370
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.86 E-value=0.39 Score=37.98 Aligned_cols=76 Identities=13% Similarity=0.241 Sum_probs=50.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+.++++|+=..+.||...+-...+++.++...+. +.+.++.+=. .-.....++++||
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~--------------------~R~vSn~IAe~~~ 74 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIE--------------------YRPVSNAIAEDFG 74 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGG--------------------GHHHHHHHHHHHT
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEe--------------------CchhHHHHHHHhC
Confidence 4689988888999999999988898888886543 5555554321 2223489999999
Q ss_pred CCC-cCeEEEEcCCCCCCCeeecc
Q 015833 111 IEG-IPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 111 v~~-~P~~~lid~~~~~G~i~~~~ 133 (399)
|.+ -|.+++|. +|+++...
T Consensus 75 V~HeSPQ~ili~----~g~~v~~a 94 (105)
T PF11009_consen 75 VKHESPQVILIK----NGKVVWHA 94 (105)
T ss_dssp ----SSEEEEEE----TTEEEEEE
T ss_pred CCcCCCcEEEEE----CCEEEEEC
Confidence 986 79999998 89888653
No 371
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=93.84 E-value=0.16 Score=47.32 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=50.0
Q ss_pred CCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 32 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 32 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
+-.|+|+||-+.++.|..+...|..|+.+|.. +.++.|..... . +...|..
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~------------------------~-~~~~f~~ 196 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKC------------------------P-ASENFPD 196 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGC------------------------C-TTTTS-T
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhcc------------------------C-cccCCcc
Confidence 45899999999999999999999999999965 56666644211 1 3456888
Q ss_pred CCcCeEEEEcCCCCCCCeeec
Q 015833 112 EGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 112 ~~~P~~~lid~~~~~G~i~~~ 132 (399)
...|+++++. +|.++..
T Consensus 197 ~~LPtllvYk----~G~l~~~ 213 (265)
T PF02114_consen 197 KNLPTLLVYK----NGDLIGN 213 (265)
T ss_dssp TC-SEEEEEE----TTEEEEE
T ss_pred cCCCEEEEEE----CCEEEEe
Confidence 9999999998 7877754
No 372
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.83 E-value=0.27 Score=35.82 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=37.2
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|..+|||+|.+....|.+ . ++.+..++++.+.+ ...+.+..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~---------~i~~~~~~v~~~~~--------------------~~~~~~~~ 46 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------N---------GISYEEIPLGKDIT--------------------GRSLRAVT 46 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------c---------CCCcEEEECCCChh--------------------HHHHHHHh
Confidence 456788999999987655542 2 34555566664431 13455556
Q ss_pred CCCccceEEEECCCCcEE
Q 015833 281 DVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~ 298 (399)
|...+|.+ ++| |+.+
T Consensus 47 g~~~vP~i-fi~--g~~i 61 (72)
T cd03029 47 GAMTVPQV-FID--GELI 61 (72)
T ss_pred CCCCcCeE-EEC--CEEE
Confidence 88999997 563 5544
No 373
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.76 E-value=0.0093 Score=53.37 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=51.4
Q ss_pred EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCC
Q 015833 34 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 113 (399)
Q Consensus 34 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 113 (399)
-.++.|+|+|||.|....|.|...+.--.+-+ +.+..|.+ ..+.-|.-+|-+..
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~--v~va~VDv------------------------t~npgLsGRF~vta 94 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLG--VKVAKVDV------------------------TTNPGLSGRFLVTA 94 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCCc--eeEEEEEE------------------------EeccccceeeEEEe
Confidence 44789999999999999999998877765544 66666633 22255666788889
Q ss_pred cCeEEEEcCCCCCCCeeec
Q 015833 114 IPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 114 ~P~~~lid~~~~~G~i~~~ 132 (399)
.|++|=+. +|.....
T Consensus 95 LptIYHvk----DGeFrry 109 (248)
T KOG0913|consen 95 LPTIYHVK----DGEFRRY 109 (248)
T ss_pred cceEEEee----ccccccc
Confidence 99999886 6665533
No 374
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=93.69 E-value=0.16 Score=38.63 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=25.0
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 76 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D 76 (399)
++.|..+|||+|......|.++..+.. + +.+..++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~--i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--D--FEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--C--CcEEEEECC
Confidence 567889999999998888777543321 2 445555554
No 375
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=93.59 E-value=0.37 Score=43.52 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=76.1
Q ss_pred cccCCeEEecCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCC-cEEEEEEecCCChHHH--HHhH
Q 015833 10 QLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGS-DFEVVFVSSDEDLNAF--NNYR 86 (399)
Q Consensus 10 ~~~p~f~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~-~~~ii~Vs~D~~~~~~--~~~~ 86 (399)
+.+|.+++-+ .-...+..|+++||-+-..+|..|...+..|..|..++...|- ++.++.|+--...... ....
T Consensus 8 ~~~p~W~i~~----~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~ 83 (238)
T PF04592_consen 8 KPPPPWKIGG----QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELK 83 (238)
T ss_pred CCCCCceECC----chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHH
Confidence 4567776633 3557788999999999999999999999999999999988773 6777777753222222 2222
Q ss_pred hcCCCcccccC-ChHHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 87 ACMPWLAVPYS-DLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 87 ~~~~~~~~~~~-d~~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
...+ ..+|.. .......++..++-. ---++|+|+ =|++++.
T Consensus 84 ~r~~-~~ipVyqq~~~q~dvW~~L~G~-kdD~~iyDR---CGrL~~~ 125 (238)
T PF04592_consen 84 RRVS-EHIPVYQQDENQPDVWELLNGS-KDDFLIYDR---CGRLTYH 125 (238)
T ss_pred HhCC-CCCceecCCccccCHHHHhCCC-cCcEEEEec---cCcEEEE
Confidence 3333 123322 222336677776643 345788888 8888866
No 376
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.58 E-value=0.26 Score=41.81 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=38.6
Q ss_pred eeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 190 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 190 ~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
+.+..-.++++|+.|+...||+|..+.+.+.++.+++-+. ..+.++...+
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~--------~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDP--------GKVKFVFRPV 54 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEES
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCC--------CceEEEEEEc
Confidence 4455556789999999999999999999999999998322 2588888876
No 377
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.21 E-value=0.25 Score=35.21 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=34.9
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|.++|||+|+.....|.+. + +.+..++++.+.+ ....+.+..+...+|
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~--i~~~~~di~~~~~--------------------~~~~l~~~~~~~~~P 52 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------G--IEFEEIDILEDGE--------------------LREELKELSGWPTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------C--CcEEEEECCCCHH--------------------HHHHHHHHhCCCCcC
Confidence 4567899999999998877753 2 3444555543321 225555666777888
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
.++
T Consensus 53 ~~~ 55 (72)
T cd02066 53 QIF 55 (72)
T ss_pred EEE
Confidence 764
No 378
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=93.20 E-value=0.46 Score=34.65 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=37.9
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|..+||+.|++....|++ . ++.+..+.++.+.+. ..++.+..
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~---------gi~~~~~di~~~~~~-------------------~~el~~~~ 47 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------K---------GLPYVEINIDIFPER-------------------KAELEERT 47 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------C---------CCceEEEECCCCHHH-------------------HHHHHHHh
Confidence 456778999999987665553 2 455666677654422 24556666
Q ss_pred CCCccceEEEECCCCcEE
Q 015833 281 DVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~ 298 (399)
+-..+|.+ ++| |+.+
T Consensus 48 g~~~vP~v-~i~--~~~i 62 (73)
T cd03027 48 GSSVVPQI-FFN--EKLV 62 (73)
T ss_pred CCCCcCEE-EEC--CEEE
Confidence 66788887 453 4444
No 379
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.69 E-value=0.44 Score=34.63 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=33.8
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|..+|||+|.+....|++ .+ +.+..++++.+.+ ...+.+..+...+|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~--i~~~~~~v~~~~~---------------------~~~~~~~~g~~~vP 52 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NG--ISYEEIPLGKDIT---------------------GRSLRAVTGAMTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cC--CCcEEEECCCChh---------------------HHHHHHHhCCCCcC
Confidence 466789999999998776663 23 4444445543311 13455556888899
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
.++
T Consensus 53 ~if 55 (72)
T cd03029 53 QVF 55 (72)
T ss_pred eEE
Confidence 874
No 380
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=92.57 E-value=0.51 Score=34.37 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=33.5
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCC
Q 015833 202 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 281 (399)
Q Consensus 202 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~ 281 (399)
..|..++||+|......|.+ . ++.+-.+.++.+.+.. ..+. ..|
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~---------~i~~~~~di~~~~~~~-------------------~~~~-~~g 45 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------H---------GIAFEEINIDEQPEAI-------------------DYVK-AQG 45 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------C---------CCceEEEECCCCHHHH-------------------HHHH-HcC
Confidence 45678999999987766653 2 4556666776554321 2222 347
Q ss_pred CCccceEEE
Q 015833 282 VQGIPCLVI 290 (399)
Q Consensus 282 v~~~P~~~l 290 (399)
...+|.+++
T Consensus 46 ~~~vP~v~~ 54 (72)
T TIGR02194 46 FRQVPVIVA 54 (72)
T ss_pred CcccCEEEE
Confidence 789999744
No 381
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=92.52 E-value=0.77 Score=37.21 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=52.4
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
.|.|+|-|.-.|-|.|.++-..|.++.+...+- ..|.-+.+|.. +.+
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf----------a~IylvdideV-----------------------~~~ 69 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF----------AVIYLVDIDEV-----------------------PDF 69 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc----------eEEEEEecchh-----------------------hhh
Confidence 478999999999999999999999999888743 34444555533 678
Q ss_pred HHhCCCCccceEEE-ECCCCcEEec
Q 015833 277 TKYFDVQGIPCLVI-IGPEGKTVTK 300 (399)
Q Consensus 277 ~~~~~v~~~P~~~l-id~~G~i~~~ 300 (399)
-+.|++...|++++ ++....-+..
T Consensus 70 ~~~~~l~~p~tvmfFfn~kHmkiD~ 94 (142)
T KOG3414|consen 70 VKMYELYDPPTVMFFFNNKHMKIDL 94 (142)
T ss_pred hhhhcccCCceEEEEEcCceEEEee
Confidence 88899999997654 4444444443
No 382
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=92.34 E-value=0.72 Score=36.48 Aligned_cols=76 Identities=16% Similarity=0.311 Sum_probs=51.3
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
.++++|+=-++.||....-...+++.++...+ ++.+..+.+-... +....+
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~----------~~~~y~l~v~~~R-------------------~vSn~I 69 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPD----------EIPVYYLDVIEYR-------------------PVSNAI 69 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT--------------EEEEEGGGGH-------------------HHHHHH
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc----------cceEEEEEEEeCc-------------------hhHHHH
Confidence 46777777788999999988888887776543 2677777764332 124789
Q ss_pred HHhCCCC-ccceEEEECCCCcEEeccc
Q 015833 277 TKYFDVQ-GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 277 ~~~~~v~-~~P~~~lid~~G~i~~~~~ 302 (399)
++.|||. .-|-++|| ++|+++....
T Consensus 70 Ae~~~V~HeSPQ~ili-~~g~~v~~aS 95 (105)
T PF11009_consen 70 AEDFGVKHESPQVILI-KNGKVVWHAS 95 (105)
T ss_dssp HHHHT----SSEEEEE-ETTEEEEEEE
T ss_pred HHHhCCCcCCCcEEEE-ECCEEEEECc
Confidence 9999996 57999999 9999997643
No 383
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.31 E-value=0.29 Score=50.48 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=45.5
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
++++.-+..|..++||+|+.....+++++..- +++..-.| |.....++..+|
T Consensus 114 ~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~----~~i~~~~i------------------------d~~~~~~~~~~~ 165 (517)
T PRK15317 114 LDGDFHFETYVSLSCHNCPDVVQALNLMAVLN----PNITHTMI------------------------DGALFQDEVEAR 165 (517)
T ss_pred cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC----CCceEEEE------------------------EchhCHhHHHhc
Confidence 34556688889999999999888888777652 23554444 222338888999
Q ss_pred CCCCcCeEEE
Q 015833 110 DIEGIPCLVV 119 (399)
Q Consensus 110 ~v~~~P~~~l 119 (399)
++.++|++++
T Consensus 166 ~v~~VP~~~i 175 (517)
T PRK15317 166 NIMAVPTVFL 175 (517)
T ss_pred CCcccCEEEE
Confidence 9999999975
No 384
>PRK10329 glutaredoxin-like protein; Provisional
Probab=92.26 E-value=0.62 Score=35.03 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=23.3
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 78 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~ 78 (399)
+..|..+||++|......|.+ .| +.+-.++++.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~g--I~~~~idi~~~ 36 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RG--FDFEMINVDRV 36 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CC--CceEEEECCCC
Confidence 456789999999998777643 44 44555566544
No 385
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=92.16 E-value=0.27 Score=36.47 Aligned_cols=53 Identities=15% Similarity=0.360 Sum_probs=33.7
Q ss_pred EEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCe
Q 015833 37 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPC 116 (399)
Q Consensus 37 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~ 116 (399)
..|+.+|||+|......|++ .+-+++.+ +++.+.+ ...++.+..+...+|.
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~--di~~~~~--------------------~~~~~~~~~g~~~vP~ 52 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------KGVTFTEI--RVDGDPA--------------------LRDEMMQRSGRRTVPQ 52 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------cCCCcEEE--EecCCHH--------------------HHHHHHHHhCCCCcCE
Confidence 56789999999998887764 23234444 4443321 2245555667788898
Q ss_pred EE
Q 015833 117 LV 118 (399)
Q Consensus 117 ~~ 118 (399)
++
T Consensus 53 i~ 54 (79)
T TIGR02181 53 IF 54 (79)
T ss_pred EE
Confidence 74
No 386
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=2.1 Score=40.34 Aligned_cols=84 Identities=15% Similarity=0.267 Sum_probs=60.6
Q ss_pred eeccccCCcEEEEEEecC----CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcc
Q 015833 190 VPVSSLVGKTVGLYFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA 265 (399)
Q Consensus 190 ~~l~~~~gk~vll~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~ 265 (399)
+.....++=.+++.|.|. .|.-|+.+..++.-+++.+... .+..++-++.+-.+|-++
T Consensus 53 ~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~----~~~sn~tklFF~~Vd~~e-------------- 114 (331)
T KOG2603|consen 53 FVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYN----SPFSNGTKLFFCMVDYDE-------------- 114 (331)
T ss_pred hccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhcc----CCCCCcceEEEEEEeccc--------------
Confidence 333444555678888875 5999999999999999988754 112344567777777543
Q ss_pred cccCCchhHHHHHhCCCCccceEEEECCC-CcEE
Q 015833 266 LPFGDPTIKELTKYFDVQGIPCLVIIGPE-GKTV 298 (399)
Q Consensus 266 ~p~~~d~~~~~~~~~~v~~~P~~~lid~~-G~i~ 298 (399)
..++.+.++++..|+++++.|. |+..
T Consensus 115 -------~p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 115 -------SPQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred -------cHHHHHHhcccCCCeEEEeCCCccccc
Confidence 3788999999999999999654 5555
No 387
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=0.58 Score=39.18 Aligned_cols=121 Identities=21% Similarity=0.289 Sum_probs=71.9
Q ss_pred cccccccCCeEEecC------CCC-EEecccc-CCCEEEEEEe--cCCCcccHh-hHHHHHHHHHHHhcCCCcE-EEEEE
Q 015833 6 WYVQQLRRRMTSTKE------IGE-EVKVSDL-EGKVTALYFS--ANWYPPCGN-FTGVLVDVYEELRNNGSDF-EVVFV 73 (399)
Q Consensus 6 ~~~~~~~p~f~l~d~------~G~-~v~l~~~-~gk~vlv~F~--a~wC~~C~~-~~p~l~~l~~~~~~~~~~~-~ii~V 73 (399)
..+|+..|..+++.. .|. .++..++ +||.|+| |. +..-|.|.. .+|.+.+++++++.+| + +|+.|
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~kG--VD~I~cV 79 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAKG--VDEIYCV 79 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHcC--CceEEEE
Confidence 456888888777654 343 3555664 7887655 44 444677877 7999999999999887 4 67777
Q ss_pred ecCCCh--HHHHHhHhcC-CCcccccCChHHHHHHHhh-------cCCCCcCeEEEEcCCCCCCCeeecc
Q 015833 74 SSDEDL--NAFNNYRACM-PWLAVPYSDLETKKALNRK-------FDIEGIPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 74 s~D~~~--~~~~~~~~~~-~~~~~~~~d~~~~~~l~~~-------~~v~~~P~~~lid~~~~~G~i~~~~ 133 (399)
|++..- .+|.+..... +...++....+-.+.+... ||+++.....+++ ||.+..-.
T Consensus 80 SVND~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV~----nGvV~~~~ 145 (165)
T COG0678 80 SVNDAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVVE----NGVVEKLF 145 (165)
T ss_pred EeCcHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEEe----CCeEEEEE
Confidence 776431 2333333322 3445554333211222111 3456666677776 77776554
No 388
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=91.89 E-value=0.63 Score=33.89 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=22.7
Q ss_pred EEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 015833 37 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 78 (399)
Q Consensus 37 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~ 78 (399)
..|..++||+|+.....|++ .| +.+-.++++.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~ 34 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQ 34 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCC
Confidence 45778999999998887764 33 44445555544
No 389
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=91.88 E-value=0.69 Score=37.10 Aligned_cols=53 Identities=11% Similarity=0.195 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCC
Q 015833 219 LLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV 282 (399)
Q Consensus 219 l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v 282 (399)
|.+...++.+. ++++|.|.... .+..++|.+... .++|+..|++..+-+.+|+
T Consensus 2 L~~~~~~l~~~---------gv~lv~I~~g~-~~~~~~f~~~~~-~p~~ly~D~~~~lY~~lg~ 54 (115)
T PF13911_consen 2 LSRRKPELEAA---------GVKLVVIGCGS-PEGIEKFCELTG-FPFPLYVDPERKLYKALGL 54 (115)
T ss_pred hhHhHHHHHHc---------CCeEEEEEcCC-HHHHHHHHhccC-CCCcEEEeCcHHHHHHhCC
Confidence 34455566554 78999999884 444888887655 4777888877777777766
No 390
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=91.82 E-value=0.47 Score=34.61 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=17.1
Q ss_pred EEEEecCCCcccHhhHHHHHH
Q 015833 36 ALYFSANWYPPCGNFTGVLVD 56 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~ 56 (399)
++.|+.++||+|......|++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~ 22 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK 22 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 457789999999998877765
No 391
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=91.79 E-value=0.12 Score=34.94 Aligned_cols=32 Identities=25% Similarity=0.705 Sum_probs=27.3
Q ss_pred eecCCCCCCCCc-eeEEcCCC-CCCCcCcccccc
Q 015833 360 FICCDCDEQGSG-WAYQCLEC-GYEVHPKCVRAV 391 (399)
Q Consensus 360 ~~c~~C~~~~~~-w~~~c~~c-~~~~~~~~~~~~ 391 (399)
|.|+.|.+.-.+ -+|+|.+| +|||=..|-...
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g 34 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSAG 34 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhCc
Confidence 469999988877 78999999 999999997653
No 392
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=0.28 Score=50.88 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=51.9
Q ss_pred CCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
.+|+++|....+||.+|..+..+- .++++-+.. .+|.|.||+++- |.....
T Consensus 42 edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~------------~FV~IKVDREER--------------PDvD~~ 95 (667)
T COG1331 42 EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE------------NFVPVKVDREER--------------PDVDSL 95 (667)
T ss_pred hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh------------CceeeeEChhhc--------------cCHHHH
Confidence 478999999999999999866431 123433332 388888887531 111111
Q ss_pred hHHHHHhC-CCCccceEEEECCCCcEEec
Q 015833 273 IKELTKYF-DVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 273 ~~~~~~~~-~v~~~P~~~lid~~G~i~~~ 300 (399)
-..+++.. |--++|-++++-|+|+....
T Consensus 96 Ym~~~q~~tG~GGWPLtVfLTPd~kPFfa 124 (667)
T COG1331 96 YMNASQAITGQGGWPLTVFLTPDGKPFFA 124 (667)
T ss_pred HHHHHHHhccCCCCceeEEECCCCceeee
Confidence 23344443 34589999999999998754
No 393
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=91.53 E-value=0.84 Score=35.60 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=36.4
Q ss_pred cEEEEEEe----cCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 015833 198 KTVGLYFS----ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 273 (399)
Q Consensus 198 k~vll~F~----a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 273 (399)
+.|+|+-. ++|||+|.+....|.++ ++.+..+.++.+.+ . .
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----------------~i~~~~~di~~~~~-~------------------~ 56 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKAC----------------GVPFAYVNVLEDPE-I------------------R 56 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHc----------------CCCEEEEECCCCHH-H------------------H
Confidence 34555543 38999999766555432 34455556654432 1 2
Q ss_pred HHHHHhCCCCccceEEEECCCCcEE
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
..+.+..|...+|.+| +| |+.+
T Consensus 57 ~~l~~~tg~~tvP~vf-i~--g~~i 78 (97)
T TIGR00365 57 QGIKEYSNWPTIPQLY-VK--GEFV 78 (97)
T ss_pred HHHHHHhCCCCCCEEE-EC--CEEE
Confidence 4455556778899885 53 5543
No 394
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=91.42 E-value=0.88 Score=34.85 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=36.9
Q ss_pred CcEEEEEEec----CCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 197 GKTVGLYFSA----RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 197 gk~vll~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
+++|+|+--. +|||+|......|.+. ++.+..+.++.+.+ .
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~----------------~i~y~~idv~~~~~-~------------------ 51 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL----------------GVDFGTFDILEDEE-V------------------ 51 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc----------------CCCeEEEEcCCCHH-H------------------
Confidence 4455554332 6999999766555442 23344445554422 1
Q ss_pred hHHHHHhCCCCccceEEEECCCCcEE
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i~ 298 (399)
...+.+..|-..+|.+ ++ +|+.+
T Consensus 52 ~~~l~~~~g~~tvP~v-fi--~g~~i 74 (90)
T cd03028 52 RQGLKEYSNWPTFPQL-YV--NGELV 74 (90)
T ss_pred HHHHHHHhCCCCCCEE-EE--CCEEE
Confidence 2456666688899997 44 35544
No 395
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=91.38 E-value=0.58 Score=34.13 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=34.8
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|..+|||+|+.....|.+ .+ +.+..++++.+.+ ...++.+..+-..+|
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~--------------------~~~el~~~~g~~~vP 53 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPE--------------------RKAELEERTGSSVVP 53 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHH--------------------HHHHHHHHhCCCCcC
Confidence 356778999999998877664 33 4444555543322 225566666667778
Q ss_pred eEEE
Q 015833 116 CLVV 119 (399)
Q Consensus 116 ~~~l 119 (399)
.+++
T Consensus 54 ~v~i 57 (73)
T cd03027 54 QIFF 57 (73)
T ss_pred EEEE
Confidence 7743
No 396
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=91.36 E-value=1.1 Score=34.42 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=37.2
Q ss_pred cCCCEEEEEEec----CCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHH
Q 015833 30 LEGKVTALYFSA----NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 105 (399)
Q Consensus 30 ~~gk~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 105 (399)
++.++|+|+--. +|||+|......|.+. +.++..+ +++.+ .....++
T Consensus 5 i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~i--dv~~~--------------------~~~~~~l 55 (90)
T cd03028 5 IKENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTF--DILED--------------------EEVRQGL 55 (90)
T ss_pred hccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEE--EcCCC--------------------HHHHHHH
Confidence 345666665432 6999999977766552 3234444 43322 2233667
Q ss_pred HhhcCCCCcCeEEEEc
Q 015833 106 NRKFDIEGIPCLVVLQ 121 (399)
Q Consensus 106 ~~~~~v~~~P~~~lid 121 (399)
.+..+-..+|.+ +++
T Consensus 56 ~~~~g~~tvP~v-fi~ 70 (90)
T cd03028 56 KEYSNWPTFPQL-YVN 70 (90)
T ss_pred HHHhCCCCCCEE-EEC
Confidence 777788889987 444
No 397
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=91.25 E-value=0.087 Score=36.21 Aligned_cols=24 Identities=42% Similarity=1.086 Sum_probs=21.1
Q ss_pred eecCCCCC---CCCceeEEcCCCCCCC
Q 015833 360 FICCDCDE---QGSGWAYQCLECGYEV 383 (399)
Q Consensus 360 ~~c~~C~~---~~~~w~~~c~~c~~~~ 383 (399)
|+|++|.. +.++=..+|.+|+|++
T Consensus 21 YiCgdC~~en~lk~~D~irCReCG~RI 47 (62)
T KOG3507|consen 21 YICGDCGQENTLKRGDVIRCRECGYRI 47 (62)
T ss_pred EEeccccccccccCCCcEehhhcchHH
Confidence 89999985 5678899999999986
No 398
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=91.19 E-value=0.3 Score=42.24 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=32.8
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEE
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 73 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~V 73 (399)
++++.++.|+...||+|+.+.+.+.++.+++.+ ++.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~---~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK---DVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC---CceEEEc
Confidence 688999999999999999999999999888733 2555433
No 399
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=91.17 E-value=0.84 Score=34.22 Aligned_cols=56 Identities=27% Similarity=0.344 Sum_probs=41.3
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
|+.|..+.|+-|......|.++... ..+.+-.|+++.+ .++.+.|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~------------~~~~l~~vDI~~d-----------------------~~l~~~Y 46 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE------------FPFELEEVDIDED-----------------------PELFEKY 46 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT------------STCEEEEEETTTT-----------------------HHHHHHS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh------------cCceEEEEECCCC-----------------------HHHHHHh
Confidence 5677889999999877776664332 2588999999855 5688899
Q ss_pred CCCccceEEEEC
Q 015833 281 DVQGIPCLVIIG 292 (399)
Q Consensus 281 ~v~~~P~~~lid 292 (399)
+. .+|.+.+-+
T Consensus 47 ~~-~IPVl~~~~ 57 (81)
T PF05768_consen 47 GY-RIPVLHIDG 57 (81)
T ss_dssp CT-STSEEEETT
T ss_pred cC-CCCEEEEcC
Confidence 95 799876654
No 400
>PRK10638 glutaredoxin 3; Provisional
Probab=91.16 E-value=1.1 Score=33.67 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=37.0
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
+..|..+||++|......|++ . ++....+.++.+.+. ..++.+..
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~---------gi~y~~~dv~~~~~~-------------------~~~l~~~~ 48 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------K---------GVSFQEIPIDGDAAK-------------------REEMIKRS 48 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------c---------CCCcEEEECCCCHHH-------------------HHHHHHHh
Confidence 446678999999987665553 1 344455666644321 23455566
Q ss_pred CCCccceEEEECCCCcEE
Q 015833 281 DVQGIPCLVIIGPEGKTV 298 (399)
Q Consensus 281 ~v~~~P~~~lid~~G~i~ 298 (399)
|...+|+++ + +|+.+
T Consensus 49 g~~~vP~i~-~--~g~~i 63 (83)
T PRK10638 49 GRTTVPQIF-I--DAQHI 63 (83)
T ss_pred CCCCcCEEE-E--CCEEE
Confidence 788999774 4 46655
No 401
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=90.95 E-value=1.5 Score=35.63 Aligned_cols=65 Identities=18% Similarity=0.432 Sum_probs=51.3
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
..|.|+|-|.-.|-|.|..+-..|.++++...+- .+|.-+.+|+ -+.+.+.|+
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~Iylvdide------------------------V~~~~~~~~ 74 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDE------------------------VPDFVKMYE 74 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecch------------------------hhhhhhhhc
Confidence 5689999999999999999999999999998653 3344443331 267778899
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
+...|++.++-.
T Consensus 75 l~~p~tvmfFfn 86 (142)
T KOG3414|consen 75 LYDPPTVMFFFN 86 (142)
T ss_pred ccCCceEEEEEc
Confidence 999998888764
No 402
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=90.53 E-value=0.21 Score=34.04 Aligned_cols=35 Identities=31% Similarity=0.633 Sum_probs=27.3
Q ss_pred CCeecCCCCCCC---CceeEEcCCCCCCCcCccccccC
Q 015833 358 GPFICCDCDEQG---SGWAYQCLECGYEVHPKCVRAVD 392 (399)
Q Consensus 358 ~~~~c~~C~~~~---~~w~~~c~~c~~~~~~~~~~~~~ 392 (399)
.+-+|+.|++.= ..-.|+|..|++-+|.+|+....
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~ 47 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVP 47 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSS
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcC
Confidence 467999999876 55678999999999999996643
No 403
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.46 E-value=1.4 Score=33.01 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=16.1
Q ss_pred EEEEecCCCcccHhhHHHHH
Q 015833 36 ALYFSANWYPPCGNFTGVLV 55 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~ 55 (399)
++.|.-++||+|.+....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 46677899999999777666
No 404
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=90.10 E-value=0.61 Score=39.31 Aligned_cols=72 Identities=25% Similarity=0.366 Sum_probs=47.7
Q ss_pred cccccccccCC--eEEe-cCC----CCEEecccc-CCCEEEEEEe--cCCCcc-cHhhHHHHHHHHHHHhcCCCcEEEEE
Q 015833 4 SQWYVQQLRRR--MTST-KEI----GEEVKVSDL-EGKVTALYFS--ANWYPP-CGNFTGVLVDVYEELRNNGSDFEVVF 72 (399)
Q Consensus 4 ~~~~~~~~~p~--f~l~-d~~----G~~v~l~~~-~gk~vlv~F~--a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~ii~ 72 (399)
....+|...|+ .++- +.. |.+++++++ +||-++| |. +..-|. |+...|-+.+-+++++.+| --+|+.
T Consensus 7 a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksKG-Vd~iic 84 (171)
T KOG0541|consen 7 APIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSKG-VDEIIC 84 (171)
T ss_pred ccccccCccccccchhhccCccccccceEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhcC-CcEEEE
Confidence 34567888888 4422 222 237888886 7866544 43 333454 7778999999999999887 226777
Q ss_pred EecCC
Q 015833 73 VSSDE 77 (399)
Q Consensus 73 Vs~D~ 77 (399)
|++|+
T Consensus 85 vSVnD 89 (171)
T KOG0541|consen 85 VSVND 89 (171)
T ss_pred EecCc
Confidence 88864
No 405
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.04 E-value=0.68 Score=47.72 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=44.8
Q ss_pred cCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhc
Q 015833 30 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 109 (399)
Q Consensus 30 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 109 (399)
+.++.-+..|..+.||+|+.....+++++.... ++..-.| |.....++..+|
T Consensus 115 ~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p----~i~~~~i------------------------d~~~~~~~~~~~ 166 (515)
T TIGR03140 115 LNGPLHFETYVSLTCQNCPDVVQALNQMALLNP----NISHTMI------------------------DGALFQDEVEAL 166 (515)
T ss_pred cCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC----CceEEEE------------------------EchhCHHHHHhc
Confidence 455666888889999999987777777666522 3444333 333337888999
Q ss_pred CCCCcCeEEE
Q 015833 110 DIEGIPCLVV 119 (399)
Q Consensus 110 ~v~~~P~~~l 119 (399)
++.++|++++
T Consensus 167 ~v~~VP~~~i 176 (515)
T TIGR03140 167 GIQGVPAVFL 176 (515)
T ss_pred CCcccCEEEE
Confidence 9999999985
No 406
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=89.91 E-value=3 Score=33.78 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=52.1
Q ss_pred ccccCCcEEEEEEecC--CChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 015833 192 VSSLVGKTVGLYFSAR--WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 269 (399)
Q Consensus 192 l~~~~gk~vll~F~a~--wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 269 (399)
|++++++.-+|..+|| .-+.-..+...|.+....+.++ ++.++.|.-+.... ..-+..
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR---------di~v~~i~~~~~~~-----------~~~~~~ 62 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER---------DIVVIVITGDGARS-----------PGKPLS 62 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC---------ceEEEEEeCCcccc-----------ccCcCC
Confidence 5566675544444554 3344555666666655556554 66666664332211 001222
Q ss_pred CchhHHHHHhCCCC-ccceEEEECCCCcEEeccc
Q 015833 270 DPTIKELTKYFDVQ-GIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 270 ~d~~~~~~~~~~v~-~~P~~~lid~~G~i~~~~~ 302 (399)
......+.+.|++. +.-+++||+++|.+..+..
T Consensus 63 ~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~ 96 (118)
T PF13778_consen 63 PEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWP 96 (118)
T ss_pred HHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecC
Confidence 22356788888864 2347899999999988743
No 407
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.35 E-value=0.98 Score=40.25 Aligned_cols=94 Identities=20% Similarity=0.324 Sum_probs=63.8
Q ss_pred cCCeEEecCCCCEEecccc-CCC--EE-EEEEecC----CCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 015833 12 RRRMTSTKEIGEEVKVSDL-EGK--VT-ALYFSAN----WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 83 (399)
Q Consensus 12 ~p~f~l~d~~G~~v~l~~~-~gk--~v-lv~F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~ 83 (399)
..+..+-..+|+ .+|++| .|| .+ .=++++| .|+-|...+-.+......+...+ +.++.|+-- ..+.+.
T Consensus 52 ~K~Y~Fe~~~G~-~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~d--v~lv~VsRA-Pl~~l~ 127 (247)
T COG4312 52 DKDYVFETENGK-KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHD--VTLVAVSRA-PLEELV 127 (247)
T ss_pred cceeEeecCCcc-hhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcC--ceEEEEecC-cHHHHH
Confidence 345666667774 889886 666 33 3334455 59999999999887777777665 888888654 457788
Q ss_pred HhHhcCCCcccccCChHHHHHHHhhcCC
Q 015833 84 NYRACMPWLAVPYSDLETKKALNRKFDI 111 (399)
Q Consensus 84 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v 111 (399)
.+.+.|+|.+--++..+ ..+.+.|++
T Consensus 128 ~~k~rmGW~f~w~Ss~~--s~Fn~Df~v 153 (247)
T COG4312 128 AYKRRMGWQFPWVSSTD--SDFNRDFQV 153 (247)
T ss_pred HHHHhcCCcceeEeccC--ccccccccc
Confidence 89999998733333322 556666766
No 408
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=89.31 E-value=1.9 Score=32.22 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=15.1
Q ss_pred EEEEecCCChhhhhhHHHHH
Q 015833 201 GLYFSARWCIPCEKFMPKLL 220 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~ 220 (399)
+..|..++||+|......|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45677889999998665555
No 409
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=89.30 E-value=2.6 Score=34.78 Aligned_cols=51 Identities=20% Similarity=0.385 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCC--ccceEEEE
Q 015833 214 KFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ--GIPCLVII 291 (399)
Q Consensus 214 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~--~~P~~~li 291 (399)
.....|.+++++|+++ .+.++++..+.. ..+.+.||+. .+|+++++
T Consensus 41 ~~~~~l~~vAk~~kgk---------~i~Fv~vd~~~~-----------------------~~~~~~fgl~~~~~P~v~i~ 88 (130)
T cd02983 41 KYLEILKSVAEKFKKK---------PWGWLWTEAGAQ-----------------------LDLEEALNIGGFGYPAMVAI 88 (130)
T ss_pred HHHHHHHHHHHHhcCC---------cEEEEEEeCccc-----------------------HHHHHHcCCCccCCCEEEEE
Confidence 3567788888888754 467777776644 4488899985 59999999
Q ss_pred CCCCc
Q 015833 292 GPEGK 296 (399)
Q Consensus 292 d~~G~ 296 (399)
+.++.
T Consensus 89 ~~~~~ 93 (130)
T cd02983 89 NFRKM 93 (130)
T ss_pred ecccC
Confidence 88764
No 410
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=88.92 E-value=5.6 Score=32.71 Aligned_cols=63 Identities=25% Similarity=0.544 Sum_probs=46.6
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+.|.|+|-|.-.|-+.|..+-..|.+++++.++- ..|..|++++- +.+.+.|.
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~V------------------------pdfn~~ye 71 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEV------------------------PDFNQMYE 71 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTT------------------------HCCHHHTT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccc------------------------hhhhcccc
Confidence 5799999999999999999999999999998753 55555555422 45567788
Q ss_pred CCCcCeEEEEc
Q 015833 111 IEGIPCLVVLQ 121 (399)
Q Consensus 111 v~~~P~~~lid 121 (399)
+. .|..+++-
T Consensus 72 l~-dP~tvmFF 81 (133)
T PF02966_consen 72 LY-DPCTVMFF 81 (133)
T ss_dssp S--SSEEEEEE
T ss_pred cC-CCeEEEEE
Confidence 87 77655554
No 411
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=88.89 E-value=1.1 Score=34.85 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=35.7
Q ss_pred CCCEEEEEEe----cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHH
Q 015833 31 EGKVTALYFS----ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 106 (399)
Q Consensus 31 ~gk~vlv~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 106 (399)
+.+.|+|+-. ++|||+|.+....|.+ .+ +....++++.+. ....++.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~--i~~~~~di~~~~--------------------~~~~~l~ 60 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKA-------CG--VPFAYVNVLEDP--------------------EIRQGIK 60 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHH-------cC--CCEEEEECCCCH--------------------HHHHHHH
Confidence 4456666544 3899999998776655 23 333344444331 2225566
Q ss_pred hhcCCCCcCeEEE
Q 015833 107 RKFDIEGIPCLVV 119 (399)
Q Consensus 107 ~~~~v~~~P~~~l 119 (399)
+..+-..+|.+++
T Consensus 61 ~~tg~~tvP~vfi 73 (97)
T TIGR00365 61 EYSNWPTIPQLYV 73 (97)
T ss_pred HHhCCCCCCEEEE
Confidence 6667778888763
No 412
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=88.78 E-value=2.6 Score=34.61 Aligned_cols=58 Identities=21% Similarity=0.414 Sum_probs=43.7
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 276 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~ 276 (399)
.|.|+|-|.-.|-+.|.++-..|.+++++.++- ..|..|.++.. +.+
T Consensus 20 drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~----------a~IY~vDi~~V-----------------------pdf 66 (133)
T PF02966_consen 20 DRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF----------AVIYLVDIDEV-----------------------PDF 66 (133)
T ss_dssp SSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT----------EEEEEEETTTT-----------------------HCC
T ss_pred ceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc----------eEEEEEEcccc-----------------------hhh
Confidence 589999999999999999999999999888743 45666666643 456
Q ss_pred HHhCCCCccceE
Q 015833 277 TKYFDVQGIPCL 288 (399)
Q Consensus 277 ~~~~~v~~~P~~ 288 (399)
.+.|.+. .|.+
T Consensus 67 n~~yel~-dP~t 77 (133)
T PF02966_consen 67 NQMYELY-DPCT 77 (133)
T ss_dssp HHHTTS--SSEE
T ss_pred hcccccC-CCeE
Confidence 7788887 6743
No 413
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=88.73 E-value=0.26 Score=32.96 Aligned_cols=35 Identities=29% Similarity=0.564 Sum_probs=29.1
Q ss_pred CCeecCCCCCCCCc---eeEEcCCCCCCCcCccccccC
Q 015833 358 GPFICCDCDEQGSG---WAYQCLECGYEVHPKCVRAVD 392 (399)
Q Consensus 358 ~~~~c~~C~~~~~~---w~~~c~~c~~~~~~~~~~~~~ 392 (399)
.+..|..|.+.=.+ ..|.|..|++-.|.+|+....
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~ 47 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVP 47 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhccCC
Confidence 35689999877664 889999999999999997654
No 414
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.56 E-value=2.5 Score=33.45 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=15.3
Q ss_pred EEEEecCCCcccHhhHHHHHH
Q 015833 36 ALYFSANWYPPCGNFTGVLVD 56 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~ 56 (399)
+|.|..+||++|.+...-|.+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~ 36 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD 36 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh
Confidence 366889999999995444443
No 415
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=88.41 E-value=0.24 Score=33.13 Aligned_cols=30 Identities=30% Similarity=0.783 Sum_probs=25.2
Q ss_pred ecCCCCCCCCceeEEcCCC-CCCCcCccccc
Q 015833 361 ICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA 390 (399)
Q Consensus 361 ~c~~C~~~~~~w~~~c~~c-~~~~~~~~~~~ 390 (399)
.|+.|.+.-++-+|.|.+| ||||=..|-..
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence 5999999999999999999 68887777543
No 416
>PRK10824 glutaredoxin-4; Provisional
Probab=88.27 E-value=0.85 Score=36.83 Aligned_cols=27 Identities=11% Similarity=0.016 Sum_probs=18.8
Q ss_pred CCCEEEEEEec----CCCcccHhhHHHHHHH
Q 015833 31 EGKVTALYFSA----NWYPPCGNFTGVLVDV 57 (399)
Q Consensus 31 ~gk~vlv~F~a----~wC~~C~~~~p~l~~l 57 (399)
+...|+|+--. ||||+|.+....|...
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 45566665443 6999999987766653
No 417
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.26 E-value=2.1 Score=33.85 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=12.4
Q ss_pred EEEEecCCChhhhhh
Q 015833 201 GLYFSARWCIPCEKF 215 (399)
Q Consensus 201 ll~F~a~wC~~C~~~ 215 (399)
+|.|..+||++|...
T Consensus 16 VVifSKs~C~~c~~~ 30 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRA 30 (104)
T ss_pred EEEEECCcCchHHHH
Confidence 456889999999983
No 418
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=88.03 E-value=0.32 Score=32.61 Aligned_cols=32 Identities=31% Similarity=0.752 Sum_probs=27.1
Q ss_pred eecCCCCC-CCCceeEEcCCCC---CCCcCcccccc
Q 015833 360 FICCDCDE-QGSGWAYQCLECG---YEVHPKCVRAV 391 (399)
Q Consensus 360 ~~c~~C~~-~~~~w~~~c~~c~---~~~~~~~~~~~ 391 (399)
|.|+.|.+ .=.+-+|+|.+|. |||=..|....
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~ 36 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKG 36 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCc
Confidence 46999998 6679999999998 99999987654
No 419
>PRK10638 glutaredoxin 3; Provisional
Probab=87.66 E-value=1.4 Score=32.97 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=33.8
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|..+|||+|++....|.+ .+ +....+++|.+.+ ...++.+..+...+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~g--i~y~~~dv~~~~~--------------------~~~~l~~~~g~~~vP 54 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KG--VSFQEIPIDGDAA--------------------KREEMIKRSGRTTVP 54 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cC--CCcEEEECCCCHH--------------------HHHHHHHHhCCCCcC
Confidence 456778999999998877764 33 3333345543321 124555666778889
Q ss_pred eEE
Q 015833 116 CLV 118 (399)
Q Consensus 116 ~~~ 118 (399)
.++
T Consensus 55 ~i~ 57 (83)
T PRK10638 55 QIF 57 (83)
T ss_pred EEE
Confidence 764
No 420
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=87.25 E-value=5.6 Score=33.85 Aligned_cols=119 Identities=13% Similarity=0.259 Sum_probs=68.2
Q ss_pred cccccCCeEEec-----CCCC-----EEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEE-ecC
Q 015833 8 VQQLRRRMTSTK-----EIGE-----EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV-SSD 76 (399)
Q Consensus 8 ~~~~~p~f~l~d-----~~G~-----~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~V-s~D 76 (399)
.|+..|...+.| ++|. ..+...+.||+.+|..-|-. +.-+++...|.+..++-+=.+..++...| +.|
T Consensus 3 ~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr-~sake~N~~l~~aik~a~f~~d~yqtttIiN~d 81 (160)
T PF09695_consen 3 LGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGR-SSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD 81 (160)
T ss_pred CCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccC-CchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence 467778777655 2333 44456789999888777553 33444444444433333211223554444 554
Q ss_pred CC--------hHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCC-cCeEEEEcCCCCCCCeeecc
Q 015833 77 ED--------LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG-IPCLVVLQPYDDKDDATLHD 133 (399)
Q Consensus 77 ~~--------~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~-~P~~~lid~~~~~G~i~~~~ 133 (399)
.. +.+.++-.++++|-.+-. |.+ ..+.+.+++.. --.++++|+ +|++....
T Consensus 82 DAi~gt~~fVrss~e~~kk~~p~s~~vl-D~~--G~~~~aW~L~~~~SaiiVlDK---~G~V~F~k 141 (160)
T PF09695_consen 82 DAIWGTGGFVRSSAEDSKKEFPWSQFVL-DSN--GVVRKAWQLQEESSAIIVLDK---QGKVQFVK 141 (160)
T ss_pred cccccchHHHHHHHHHhhhhCCCcEEEE-cCC--CceeccccCCCCCceEEEEcC---CccEEEEE
Confidence 32 233344444677865544 443 56677777754 356788899 99998653
No 421
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=86.33 E-value=0.71 Score=41.42 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=34.5
Q ss_pred CCCEEec--cccCCCEEEEEEecCCCcccHhhHHHH---HHHHHHHhcCCCcEEEEEE
Q 015833 21 IGEEVKV--SDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFV 73 (399)
Q Consensus 21 ~G~~v~l--~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~V 73 (399)
+|+..+. ....|++.+|.|+...||||..+.+.+ ..+.+.+.++ +.++.+
T Consensus 24 ~G~~Y~~~~~p~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~---v~~~~~ 78 (207)
T PRK10954 24 DGKQYTTLDKPVAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG---TKMTKY 78 (207)
T ss_pred CCceeEEecCcCCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC---CeEEEe
Confidence 4654332 234688889999999999999999866 6666666543 445444
No 422
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=86.10 E-value=0.54 Score=30.84 Aligned_cols=32 Identities=28% Similarity=0.814 Sum_probs=28.0
Q ss_pred CeecCCCCCCCCceeEEcCCC-CCCCcCccccc
Q 015833 359 PFICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA 390 (399)
Q Consensus 359 ~~~c~~C~~~~~~w~~~c~~c-~~~~~~~~~~~ 390 (399)
.+.|+.|.+.=.+=+|+|..| +|||=+.|-..
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~ 36 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAK 36 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhC
Confidence 467999999778889999999 99999999765
No 423
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=85.25 E-value=0.56 Score=30.40 Aligned_cols=31 Identities=19% Similarity=0.427 Sum_probs=24.9
Q ss_pred ecCCCCCCC-CceeEEcCCC-CCCCcCcccccc
Q 015833 361 ICCDCDEQG-SGWAYQCLEC-GYEVHPKCVRAV 391 (399)
Q Consensus 361 ~c~~C~~~~-~~w~~~c~~c-~~~~~~~~~~~~ 391 (399)
.|+.|.... .+-+|+|..| ||||=..|-.+.
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~ 34 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRM 34 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhhh
Confidence 599998744 6889999987 799988887553
No 424
>PRK10824 glutaredoxin-4; Provisional
Probab=84.74 E-value=1.9 Score=34.78 Aligned_cols=24 Identities=17% Similarity=0.222 Sum_probs=15.2
Q ss_pred cEEEEEEec----CCChhhhhhHHHHHH
Q 015833 198 KTVGLYFSA----RWCIPCEKFMPKLLS 221 (399)
Q Consensus 198 k~vll~F~a----~wC~~C~~~~~~l~~ 221 (399)
..|+|+--. ||||+|.+....|.+
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~ 42 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSA 42 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHH
Confidence 345554433 599999986665554
No 425
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.58 E-value=1.9 Score=37.52 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=46.4
Q ss_pred ecCCCCEEecccc--CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEe
Q 015833 18 TKEIGEEVKVSDL--EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 74 (399)
Q Consensus 18 ~d~~G~~v~l~~~--~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs 74 (399)
.+..|++|++.++ +.+.|+....-+.|--|++....|..+.+-+...| +.+++|-
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~G--v~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELG--VVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhC--CEEEEEe
Confidence 5788999999998 45677777779999999999999999977777776 8888774
No 426
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=82.86 E-value=5.8 Score=33.60 Aligned_cols=101 Identities=22% Similarity=0.317 Sum_probs=60.3
Q ss_pred eeecccc-CCcEEEEEEecC--CChh-hhhhHHHHHHHHHHHHhhhhhcCCCCCCE-EEEEEecCCCHHHHHHHHhcCCC
Q 015833 189 KVPVSSL-VGKTVGLYFSAR--WCIP-CEKFMPKLLSIYQKIKQNLVEKGDALEDF-EVVFVSTDRDQTSFESYFGTMPW 263 (399)
Q Consensus 189 ~~~l~~~-~gk~vll~F~a~--wC~~-C~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~ 263 (399)
+++++++ +||.++| |-.| ..|. |+...|-+.+-.++++.+ ++ +|+.||+| ++-..+.+.+.++-
T Consensus 34 tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksK---------GVd~iicvSVn-DpFv~~aW~k~~g~ 102 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSK---------GVDEIICVSVN-DPFVMKAWAKSLGA 102 (171)
T ss_pred eEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhc---------CCcEEEEEecC-cHHHHHHHHhhcCc
Confidence 5677765 6766555 5544 5666 667899999989999876 44 58888888 44333333333221
Q ss_pred -cccccCCchhHHHHHhCCC-----------CccceEEEECCCCcEEecc
Q 015833 264 -LALPFGDPTIKELTKYFDV-----------QGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 264 -~~~p~~~d~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~ 301 (399)
-...+..|...++.+.+|+ ++-....++ .||++...+
T Consensus 103 ~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~n 151 (171)
T KOG0541|consen 103 NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVN 151 (171)
T ss_pred cceEEEEecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEE
Confidence 1334444545555555443 444455666 688887654
No 427
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=82.72 E-value=0.85 Score=30.74 Aligned_cols=30 Identities=33% Similarity=0.907 Sum_probs=24.8
Q ss_pred ecCCCCCC-CCceeEEcCCC-CCCCcCccccc
Q 015833 361 ICCDCDEQ-GSGWAYQCLEC-GYEVHPKCVRA 390 (399)
Q Consensus 361 ~c~~C~~~-~~~w~~~c~~c-~~~~~~~~~~~ 390 (399)
.|+.|+.. -.+.+|.|.+| ||||=..|-..
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~ 33 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFS 33 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHhC
Confidence 59999975 58899999999 78888888654
No 428
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.57 E-value=5.4 Score=29.28 Aligned_cols=71 Identities=20% Similarity=0.359 Sum_probs=44.1
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH--HHHHh
Q 015833 202 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK--ELTKY 279 (399)
Q Consensus 202 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~--~~~~~ 279 (399)
+.|++..||.|......|+++.- +++.| .+-.+-..+++|+.-. |... +-.+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v--------------~yd~V--eIt~Sm~NlKrFl~lR---------Ds~~~Fd~vk~ 59 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNV--------------DYDFV--EITESMANLKRFLHLR---------DSRPEFDEVKS 59 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCC--------------Cceee--ehhhhhhhHHHHHhhh---------ccchhHHhhhh
Confidence 56899999999877666655421 23333 3344566777776522 1112 23566
Q ss_pred CCCCccceEEEECCCCcEEe
Q 015833 280 FDVQGIPCLVIIGPEGKTVT 299 (399)
Q Consensus 280 ~~v~~~P~~~lid~~G~i~~ 299 (399)
.|--++|.+.+ .+|++|-
T Consensus 60 ~gyiGIPall~--~d~~vVl 77 (85)
T COG4545 60 NGYIGIPALLT--DDGKVVL 77 (85)
T ss_pred cCcccceEEEe--CCCcEEE
Confidence 78889998754 4677764
No 429
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=82.41 E-value=0.87 Score=29.42 Aligned_cols=33 Identities=18% Similarity=0.714 Sum_probs=26.4
Q ss_pred eecCCCCCCCCceeEEcCCC-CCCCcCccccccCC
Q 015833 360 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAVDR 393 (399)
Q Consensus 360 ~~c~~C~~~~~~w~~~c~~c-~~~~~~~~~~~~~~ 393 (399)
|-|+.|.+. .+=+|+|.+| +|||=..|-..+.-
T Consensus 1 y~C~~C~~~-~~~r~~C~~C~dfDLC~~C~~~~~H 34 (41)
T cd02337 1 YTCNECKHH-VETRWHCTVCEDYDLCITCYNTKNH 34 (41)
T ss_pred CcCCCCCCc-CCCceECCCCcchhhHHHHhCCCCC
Confidence 469999884 4689999999 99998888766443
No 430
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=81.24 E-value=1.2 Score=35.40 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=22.8
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEec
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTVTK 300 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~~~ 300 (399)
..+...||+..+|+++++ ++|+.+..
T Consensus 72 ~~L~~r~gv~~~PaLvf~-R~g~~lG~ 97 (107)
T PF07449_consen 72 RALAARFGVRRWPALVFF-RDGRYLGA 97 (107)
T ss_dssp HHHHHHHT-TSSSEEEEE-ETTEEEEE
T ss_pred HHHHHHhCCccCCeEEEE-ECCEEEEE
Confidence 789999999999999999 89988765
No 431
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=80.86 E-value=24 Score=33.98 Aligned_cols=74 Identities=15% Similarity=0.298 Sum_probs=46.6
Q ss_pred cEEEEEEecCCC--hhhhhhH---HHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 015833 198 KTVGLYFSARWC--IPCEKFM---PKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 272 (399)
Q Consensus 198 k~vll~F~a~wC--~~C~~~~---~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 272 (399)
+.++|+|+.+-- ...++.. ..+-+|..+.-.. .++.+..|....+
T Consensus 52 d~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~--------~gigfg~VD~~Kd---------------------- 101 (383)
T PF01216_consen 52 DVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED--------KGIGFGMVDSKKD---------------------- 101 (383)
T ss_dssp SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG--------CTEEEEEEETTTT----------------------
T ss_pred cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc--------cCcceEEeccHHH----------------------
Confidence 567888887642 2222222 2234455554432 3788888877655
Q ss_pred hHHHHHhCCCCccceEEEECCCCcEEecccc
Q 015833 273 IKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 273 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
..+++++|+...++++++ ++|+++..+|.
T Consensus 102 -~klAKKLgv~E~~SiyVf-kd~~~IEydG~ 130 (383)
T PF01216_consen 102 -AKLAKKLGVEEEGSIYVF-KDGEVIEYDGE 130 (383)
T ss_dssp -HHHHHHHT--STTEEEEE-ETTEEEEE-S-
T ss_pred -HHHHHhcCccccCcEEEE-ECCcEEEecCc
Confidence 789999999999999999 99999988753
No 432
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.83 E-value=10 Score=35.82 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=56.3
Q ss_pred cccCCCEEEEEEecCC----CcccHhhHHHHHHHHHHHhcCCCc---EEEEEEecCCChHHHHHhHhcCCCcccccCChH
Q 015833 28 SDLEGKVTALYFSANW----YPPCGNFTGVLVDVYEELRNNGSD---FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE 100 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~w----C~~C~~~~p~l~~l~~~~~~~~~~---~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~ 100 (399)
...++-.++++|.|.. |.-|.....+++-++..+..++++ ..+.+-.+| .+
T Consensus 56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd----------------------~~ 113 (331)
T KOG2603|consen 56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVD----------------------YD 113 (331)
T ss_pred CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEe----------------------cc
Confidence 3445567888898754 999999999999999998754322 233333333 12
Q ss_pred HHHHHHhhcCCCCcCeEEEEcCCCCCCCee
Q 015833 101 TKKALNRKFDIEGIPCLVVLQPYDDKDDAT 130 (399)
Q Consensus 101 ~~~~l~~~~~v~~~P~~~lid~~~~~G~i~ 130 (399)
...++.+++++...|+++++.| ..|+..
T Consensus 114 e~p~~Fq~l~ln~~P~l~~f~P--~~~n~~ 141 (331)
T KOG2603|consen 114 ESPQVFQQLNLNNVPHLVLFSP--AKGNKK 141 (331)
T ss_pred ccHHHHHHhcccCCCeEEEeCC--Cccccc
Confidence 2288899999999999999987 355544
No 433
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=79.70 E-value=3.9 Score=40.82 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=35.5
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhC
Q 015833 201 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 280 (399)
Q Consensus 201 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~ 280 (399)
++.|..+|||+|.+....|.+ . ++..-.|.+|.+.. ..++.++.. ...+.+..
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~---------gi~~~~idi~~~~~-~~~~~~~~~----------~~~~~~~~ 56 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------N---------DIPFTQISLDDDVK-RAEFYAEVN----------KNILLVEE 56 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------C---------CCCeEEEECCCChh-HHHHHHHHh----------hccccccC
Confidence 567889999999976554443 2 34455566664432 122222111 01134446
Q ss_pred CCCccceEEE
Q 015833 281 DVQGIPCLVI 290 (399)
Q Consensus 281 ~v~~~P~~~l 290 (399)
|...+|++++
T Consensus 57 g~~tvP~ifi 66 (410)
T PRK12759 57 HIRTVPQIFV 66 (410)
T ss_pred CCCccCeEEE
Confidence 7889998855
No 434
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=79.39 E-value=4.1 Score=35.77 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=55.2
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+..-|++.||-+.-..|+.+-..|..+++.+-+ ..+|.|+.... .-|..+++
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~------------------------PFlv~kL~ 134 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKA------------------------PFLVTKLN 134 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccC------------------------ceeeeeee
Confidence 567899999999889999999999999999754 45676655322 45667899
Q ss_pred CCCcCeEEEEcCCCCCCCeeec
Q 015833 111 IEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 111 v~~~P~~~lid~~~~~G~i~~~ 132 (399)
|+.+|++.++. +|..+.+
T Consensus 135 IkVLP~v~l~k----~g~~~D~ 152 (211)
T KOG1672|consen 135 IKVLPTVALFK----NGKTVDY 152 (211)
T ss_pred eeEeeeEEEEE----cCEEEEE
Confidence 99999999998 6665543
No 435
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=79.35 E-value=5.7 Score=41.56 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=50.4
Q ss_pred cccCCCEEEEEEecCCCcccHhhHHH---HHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChH-HHH
Q 015833 28 SDLEGKVTALYFSANWYPPCGNFTGV---LVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE-TKK 103 (399)
Q Consensus 28 ~~~~gk~vlv~F~a~wC~~C~~~~p~---l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~-~~~ 103 (399)
+.-++|||||...++||-=|.-|..+ =.++++-+++. |+-| -+|+++. | |.+ .-+
T Consensus 39 A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~---FV~I--KVDREER--------------P--DvD~~Ym 97 (667)
T COG1331 39 AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN---FVPV--KVDREER--------------P--DVDSLYM 97 (667)
T ss_pred HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC---ceee--eEChhhc--------------c--CHHHHHH
Confidence 34479999999999999999998632 12244444333 5444 4454321 1 332 113
Q ss_pred HHHhhc-CCCCcCeEEEEcCCCCCCCeeec
Q 015833 104 ALNRKF-DIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 104 ~l~~~~-~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
.++... |--+.|.++++-| +|+...-
T Consensus 98 ~~~q~~tG~GGWPLtVfLTP---d~kPFfa 124 (667)
T COG1331 98 NASQAITGQGGWPLTVFLTP---DGKPFFA 124 (667)
T ss_pred HHHHHhccCCCCceeEEECC---CCceeee
Confidence 333333 4458999999999 9988753
No 436
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=78.53 E-value=1.9 Score=38.67 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=27.1
Q ss_pred cCCcEEEEEEecCCChhhhhhHHHH---HHHHHHHHh
Q 015833 195 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQ 228 (399)
Q Consensus 195 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~ 228 (399)
..|++.++.|+...||+|..+.+.+ ..+.+.+.+
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 3578889999999999999988865 566666643
No 437
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=78.52 E-value=1.4 Score=29.62 Aligned_cols=31 Identities=29% Similarity=0.787 Sum_probs=24.6
Q ss_pred ecCCCC-CCCCceeEEcCCC-CCCCcCcccccc
Q 015833 361 ICCDCD-EQGSGWAYQCLEC-GYEVHPKCVRAV 391 (399)
Q Consensus 361 ~c~~C~-~~~~~w~~~c~~c-~~~~~~~~~~~~ 391 (399)
.|+.|. ..-.+=+|+|.+| +|||=..|-...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~ 34 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDSG 34 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHhCC
Confidence 589998 4556788999999 889888886543
No 438
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=77.09 E-value=10 Score=30.26 Aligned_cols=51 Identities=14% Similarity=0.290 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHHHHHH-hhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCc----cc
Q 015833 212 CEKFMPKLLSIYQKIK-QNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG----IP 286 (399)
Q Consensus 212 C~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~----~P 286 (399)
-......+.+++++|+ ++ +.+|.+|.+.. ....+.||+.. .|
T Consensus 33 ~~~~~~~~~~vAk~fk~gk------------i~Fv~~D~~~~---------------------~~~l~~fgl~~~~~~~P 79 (111)
T cd03073 33 TNYWRNRVLKVAKDFPDRK------------LNFAVADKEDF---------------------SHELEEFGLDFSGGEKP 79 (111)
T ss_pred HHHHHHHHHHHHHHCcCCe------------EEEEEEcHHHH---------------------HHHHHHcCCCcccCCCC
Confidence 3456777888888887 44 55555564431 34778899974 99
Q ss_pred eEEEECCCC
Q 015833 287 CLVIIGPEG 295 (399)
Q Consensus 287 ~~~lid~~G 295 (399)
.+.+++.++
T Consensus 80 ~~~i~~~~~ 88 (111)
T cd03073 80 VVAIRTAKG 88 (111)
T ss_pred EEEEEeCCC
Confidence 999998765
No 439
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=77.04 E-value=1.8 Score=28.56 Aligned_cols=30 Identities=20% Similarity=0.702 Sum_probs=23.9
Q ss_pred ecCCCCCC-CCceeEEcCCCC-CCCcCccccc
Q 015833 361 ICCDCDEQ-GSGWAYQCLECG-YEVHPKCVRA 390 (399)
Q Consensus 361 ~c~~C~~~-~~~w~~~c~~c~-~~~~~~~~~~ 390 (399)
.|+.|+.. =.+-+|.|.+|. |||=..|-..
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 59999864 466899999996 9998888644
No 440
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=76.98 E-value=0.9 Score=29.99 Aligned_cols=35 Identities=31% Similarity=0.675 Sum_probs=27.1
Q ss_pred CCeecCCCCCCCCce--eEEcCCCCCCCcCccccccC
Q 015833 358 GPFICCDCDEQGSGW--AYQCLECGYEVHPKCVRAVD 392 (399)
Q Consensus 358 ~~~~c~~C~~~~~~w--~~~c~~c~~~~~~~~~~~~~ 392 (399)
.+..|..|.+.=.+= .|.|..|++-.|.+|+....
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v~ 46 (49)
T smart00109 10 KPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKVP 46 (49)
T ss_pred CCCCccccccccCcCCCCcCCCCCCchHHHHHHhhcC
Confidence 356899998764321 68899999999999997643
No 441
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=75.39 E-value=21 Score=28.37 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHH---HHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCc--cce
Q 015833 213 EKFMPKLLSIYQK---IKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG--IPC 287 (399)
Q Consensus 213 ~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~--~P~ 287 (399)
......+.+++++ ++++ +.+|.+|.+.. ....+.||+.. .|.
T Consensus 30 ~~~~~~~~~vAk~~~~~kgk------------i~Fv~~d~~~~---------------------~~~~~~fgl~~~~~P~ 76 (111)
T cd03072 30 ESLKEFKQAVARQLISEKGA------------INFLTADGDKF---------------------RHPLLHLGKTPADLPV 76 (111)
T ss_pred HHHHHHHHHHHHHHHhcCce------------EEEEEEechHh---------------------hhHHHHcCCCHhHCCE
Confidence 4566778888888 6643 55666664431 34788899986 899
Q ss_pred EEEECCCC
Q 015833 288 LVIIGPEG 295 (399)
Q Consensus 288 ~~lid~~G 295 (399)
+.+.+.++
T Consensus 77 i~i~~~~~ 84 (111)
T cd03072 77 IAIDSFRH 84 (111)
T ss_pred EEEEcchh
Confidence 99998765
No 442
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=74.30 E-value=6.8 Score=39.11 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=17.1
Q ss_pred EEEEecCCCcccHhhHHHHHH
Q 015833 36 ALYFSANWYPPCGNFTGVLVD 56 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~ 56 (399)
++.|..+|||+|.+....|.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~ 24 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA 24 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 567889999999997776665
No 443
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=73.83 E-value=14 Score=34.27 Aligned_cols=116 Identities=12% Similarity=0.176 Sum_probs=67.0
Q ss_pred ccCCeEEecCCCCEEeccc-cCCCEEEEEEecCCCcccHhhHHHHHH-HHHHHhc-CCCcEEEEEEecCCChH--HHHHh
Q 015833 11 LRRRMTSTKEIGEEVKVSD-LEGKVTALYFSANWYPPCGNFTGVLVD-VYEELRN-NGSDFEVVFVSSDEDLN--AFNNY 85 (399)
Q Consensus 11 ~~p~f~l~d~~G~~v~l~~-~~gk~vlv~F~a~wC~~C~~~~p~l~~-l~~~~~~-~~~~~~ii~Vs~D~~~~--~~~~~ 85 (399)
.-|+|...+++|+.+++.+ ++||+.+|..+.+ ..-..+...+.. ...++.. .+..++++-|++-++.- -+...
T Consensus 100 yFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~--~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~~~ 177 (252)
T PF05176_consen 100 YFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSS--AWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLVKL 177 (252)
T ss_pred cCCCCccccCCCCCcccccccCCceEEEEEeeh--HHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHHHHHHHHHH
Confidence 5699999999999888866 5899766665533 222333222222 3333332 22269999999854321 11122
Q ss_pred Hh-----cCC---C--cccccCChHHHHHHHhhcCCC--CcCeEEEEcCCCCCCCeeec
Q 015833 86 RA-----CMP---W--LAVPYSDLETKKALNRKFDIE--GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 86 ~~-----~~~---~--~~~~~~d~~~~~~l~~~~~v~--~~P~~~lid~~~~~G~i~~~ 132 (399)
+. ..+ | +++...+. ....+.+.+++. -+..+||||. +|+|.-.
T Consensus 178 ~~~~lrk~ip~~~h~~Yf~~~~~~-~~~~iRe~Lgi~N~~~GYvyLVD~---~grIRWa 232 (252)
T PF05176_consen 178 FMGSLRKSIPEERHDRYFIVYRGQ-LSDDIREALGINNSYVGYVYLVDP---NGRIRWA 232 (252)
T ss_pred HhhhhhccCCHHHCceEEEEeCCc-ccHHHHHHhCCCCCCcCeEEEECC---CCeEEeC
Confidence 11 111 2 22322120 126777888885 4678999999 9999865
No 444
>PHA03075 glutaredoxin-like protein; Provisional
Probab=73.16 E-value=4.2 Score=32.51 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=24.7
Q ss_pred CEEEEEEecCCCcccHhhHHHHHHHHHHH
Q 015833 33 KVTALYFSANWYPPCGNFTGVLVDVYEEL 61 (399)
Q Consensus 33 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~ 61 (399)
|.++|-|.-|-|+.|......|.++.++|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 56889999999999999988887776664
No 445
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=73.07 E-value=60 Score=32.68 Aligned_cols=108 Identities=12% Similarity=0.054 Sum_probs=63.4
Q ss_pred CCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHH-----------
Q 015833 184 HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT----------- 252 (399)
Q Consensus 184 ~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~----------- 252 (399)
.+++ .+++.+++|..-+|...++- .++..-+...+...+++.+. ++-||-|..+.+.+
T Consensus 284 ~~~~-~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r---------~VlvVPv~~~~~~~~~~~~~gfg~~ 352 (453)
T PLN03098 284 STNR-IVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKR---------GVLLIPVVWGENKDPQPKKKGFGRS 352 (453)
T ss_pred cCCC-EEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHc---------CcEEEEEecCCCCcccccccccccc
Confidence 3567 89999999965444444443 44445555556666666655 78888887763221
Q ss_pred ---------------------HHHHHH-hcCCCcccccCCch-hHH---HHHhCCC-CccceEEEECCCCcEEeccc
Q 015833 253 ---------------------SFESYF-GTMPWLALPFGDPT-IKE---LTKYFDV-QGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 253 ---------------------~~~~~~-~~~~~~~~p~~~d~-~~~---~~~~~~v-~~~P~~~lid~~G~i~~~~~ 302 (399)
..+..+ .+..|...|+..+. ..= -.+.-|| .+-|.++.+..||+|.....
T Consensus 353 s~~a~~~p~~~~~~~~~~~~~~~~~~~~~~kr~~a~pv~~~~W~~wi~~q~~~~gv~~~~~vyi~lr~dGrVr~SG~ 429 (453)
T PLN03098 353 SKAAASLPSIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVTPGEDVYIILRLDGRVRRSGR 429 (453)
T ss_pred chhhhcCCCccchhhhhhHHHHHHHhhhcccceEEeecchHHHHHHHHHHHHhcCCCCCCceEEEEeeCCeEecCCC
Confidence 011111 13458888887652 111 1122233 23377889999999998743
No 446
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=72.04 E-value=1.2 Score=29.47 Aligned_cols=32 Identities=28% Similarity=0.773 Sum_probs=22.5
Q ss_pred CeecCCCCC-CCCceeEEcCCCC-CCCcCccccc
Q 015833 359 PFICCDCDE-QGSGWAYQCLECG-YEVHPKCVRA 390 (399)
Q Consensus 359 ~~~c~~C~~-~~~~w~~~c~~c~-~~~~~~~~~~ 390 (399)
.+.|+.|+. .-.+=+|+|..|. |||=..|-..
T Consensus 4 ~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~ 37 (46)
T PF00569_consen 4 GYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSK 37 (46)
T ss_dssp SCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH
T ss_pred CeECcCCCCCcCcCCeEECCCCCCCchhhHHHhC
Confidence 478999998 4467899999996 8887777543
No 447
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=71.96 E-value=18 Score=30.92 Aligned_cols=64 Identities=22% Similarity=0.405 Sum_probs=42.6
Q ss_pred CCE-EEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 32 GKV-TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 32 gk~-vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
+++ +++.|..............|+.+++++++. +.++.+..+ ....+.+.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~------------------------~~~~~~~~~~ 146 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDAD------------------------DFPRLLKYFG 146 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETT------------------------TTHHHHHHTT
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehH------------------------HhHHHHHHcC
Confidence 444 666665444455666667777777777654 666666443 1156778899
Q ss_pred CC--CcCeEEEEcC
Q 015833 111 IE--GIPCLVVLQP 122 (399)
Q Consensus 111 v~--~~P~~~lid~ 122 (399)
+. ..|.+++++.
T Consensus 147 i~~~~~P~~vi~~~ 160 (184)
T PF13848_consen 147 IDEDDLPALVIFDS 160 (184)
T ss_dssp TTTSSSSEEEEEET
T ss_pred CCCccCCEEEEEEC
Confidence 97 8999999996
No 448
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=69.87 E-value=4.1 Score=26.91 Aligned_cols=23 Identities=26% Similarity=0.764 Sum_probs=17.9
Q ss_pred eecCCCCC-----CCCceeEEcCCCCCC
Q 015833 360 FICCDCDE-----QGSGWAYQCLECGYE 382 (399)
Q Consensus 360 ~~c~~C~~-----~~~~w~~~c~~c~~~ 382 (399)
+.|++|.. +...-.|.|..|.++
T Consensus 19 ~~CP~Cg~~~~~~~~~~~~~~C~~C~~q 46 (46)
T PF12760_consen 19 FVCPHCGSTKHYRLKTRGRYRCKACRKQ 46 (46)
T ss_pred CCCCCCCCeeeEEeCCCCeEECCCCCCc
Confidence 78999984 445578999999864
No 449
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=68.37 E-value=15 Score=32.43 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=50.5
Q ss_pred CcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-CCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 197 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-RDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 197 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
|-+|+|..|...-|-|.-+.-.|++++-+|++ +++|-|... +-+
T Consensus 111 gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-----------iKFVki~at~cIp------------------------ 155 (240)
T KOG3170|consen 111 GVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-----------IKFVKIPATTCIP------------------------ 155 (240)
T ss_pred ccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-----------ceEEecccccccC------------------------
Confidence 77999999999999999999999999999874 455555432 211
Q ss_pred HHHhCCCCccceEEEECCCCcEEecccch
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQGRN 304 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 304 (399)
.|-=...||++++ -.|.+.....+.
T Consensus 156 ---NYPe~nlPTl~VY-~~G~lk~q~igl 180 (240)
T KOG3170|consen 156 ---NYPESNLPTLLVY-HHGALKKQMIGL 180 (240)
T ss_pred ---CCcccCCCeEEEe-ecchHHhheehh
Confidence 1223678999999 778777664443
No 450
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=68.24 E-value=20 Score=26.25 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=47.0
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 015833 199 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 278 (399)
Q Consensus 199 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~ 278 (399)
+++..|-+...+.....+..+.++.+++.+- .+++=.|.+-.. .++++
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~---------~~~LeVIDv~~~-----------------------P~lAe 49 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLGG---------PYELEVIDVLKQ-----------------------PQLAE 49 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcCC---------cEEEEEEEcccC-----------------------HhHHh
Confidence 4667777888888999999999998887532 455555555544 67899
Q ss_pred hCCCCccceEEEECC
Q 015833 279 YFDVQGIPCLVIIGP 293 (399)
Q Consensus 279 ~~~v~~~P~~~lid~ 293 (399)
.+++.++||++=..|
T Consensus 50 ~~~ivAtPtLvk~~P 64 (72)
T cd02978 50 EDKIVATPTLVKVLP 64 (72)
T ss_pred hCCEEEechhhhcCC
Confidence 999999999765544
No 451
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=68.00 E-value=4.4 Score=30.24 Aligned_cols=56 Identities=27% Similarity=0.323 Sum_probs=40.6
Q ss_pred EEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcC
Q 015833 36 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 115 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 115 (399)
++.|..+.|+-|......|.++... . ++.+-.|+++.+ .++.++|+. .+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~--~~~l~~vDI~~d------------------------~~l~~~Y~~-~IP 51 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---F--PFELEEVDIDED------------------------PELFEKYGY-RIP 51 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---S--TCEEEEEETTTT------------------------HHHHHHSCT-STS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---c--CceEEEEECCCC------------------------HHHHHHhcC-CCC
Confidence 5778899999999988887764433 2 378888877644 557778885 688
Q ss_pred eEEEEc
Q 015833 116 CLVVLQ 121 (399)
Q Consensus 116 ~~~lid 121 (399)
.+.+-+
T Consensus 52 Vl~~~~ 57 (81)
T PF05768_consen 52 VLHIDG 57 (81)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 877665
No 452
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=67.65 E-value=45 Score=32.99 Aligned_cols=29 Identities=14% Similarity=0.368 Sum_probs=25.1
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEeccc
Q 015833 274 KELTKYFDVQGIPCLVIIGPEGKTVTKQG 302 (399)
Q Consensus 274 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 302 (399)
..++..|-+..+|.+|+||..|+.+....
T Consensus 67 ~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 67 TQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hhhhhhcccccccceeeecCCCceeEEee
Confidence 56778888999999999999999988744
No 453
>PHA03075 glutaredoxin-like protein; Provisional
Probab=67.40 E-value=7.3 Score=31.18 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=24.2
Q ss_pred cEEEEEEecCCChhhhhhHHHHHHHHHHHH
Q 015833 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIK 227 (399)
Q Consensus 198 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~ 227 (399)
|.+++.|.-|.|+.|......|.++.++|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999988877766665553
No 454
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=66.30 E-value=23 Score=29.14 Aligned_cols=48 Identities=17% Similarity=0.405 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCC--CcCeEEEEcC
Q 015833 49 NFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE--GIPCLVVLQP 122 (399)
Q Consensus 49 ~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~--~~P~~~lid~ 122 (399)
.....|.+++++++++. +.+++++.+.. ..+.+.||+. .+|.+++++.
T Consensus 41 ~~~~~l~~vAk~~kgk~--i~Fv~vd~~~~------------------------~~~~~~fgl~~~~~P~v~i~~~ 90 (130)
T cd02983 41 KYLEILKSVAEKFKKKP--WGWLWTEAGAQ------------------------LDLEEALNIGGFGYPAMVAINF 90 (130)
T ss_pred HHHHHHHHHHHHhcCCc--EEEEEEeCccc------------------------HHHHHHcCCCccCCCEEEEEec
Confidence 34678899999997654 77777755422 4577889985 4999999997
No 455
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=65.89 E-value=39 Score=26.84 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=23.0
Q ss_pred HHHHHHHhhcCCCCcCeEEEEcCCCCCCCeeec
Q 015833 100 ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 100 ~~~~~l~~~~~v~~~P~~~lid~~~~~G~i~~~ 132 (399)
....+|..+|++...|+++++. +|+.+..
T Consensus 69 ~~e~~L~~r~gv~~~PaLvf~R----~g~~lG~ 97 (107)
T PF07449_consen 69 AAERALAARFGVRRWPALVFFR----DGRYLGA 97 (107)
T ss_dssp HHHHHHHHHHT-TSSSEEEEEE----TTEEEEE
T ss_pred hhHHHHHHHhCCccCCeEEEEE----CCEEEEE
Confidence 3448999999999999999998 6776643
No 456
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=65.12 E-value=4.1 Score=23.44 Aligned_cols=23 Identities=30% Similarity=0.765 Sum_probs=19.1
Q ss_pred ecCCCCCCCCceeEEcCCCCCCC
Q 015833 361 ICCDCDEQGSGWAYQCLECGYEV 383 (399)
Q Consensus 361 ~c~~C~~~~~~w~~~c~~c~~~~ 383 (399)
.|+.|...=+.=.-.|..|+|++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 48888888888888899999986
No 457
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=64.36 E-value=3.7 Score=22.69 Aligned_cols=9 Identities=44% Similarity=1.434 Sum_probs=6.0
Q ss_pred EEcCCCCCC
Q 015833 374 YQCLECGYE 382 (399)
Q Consensus 374 ~~c~~c~~~ 382 (399)
|.|..|+|-
T Consensus 1 y~C~~C~y~ 9 (24)
T PF13909_consen 1 YKCPHCSYS 9 (24)
T ss_dssp EE-SSSS-E
T ss_pred CCCCCCCCc
Confidence 789999985
No 458
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=63.50 E-value=4.9 Score=27.00 Aligned_cols=30 Identities=27% Similarity=0.712 Sum_probs=23.8
Q ss_pred ecCCCCC-CCCceeEEcCCC-CCCCcCccccc
Q 015833 361 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA 390 (399)
Q Consensus 361 ~c~~C~~-~~~~w~~~c~~c-~~~~~~~~~~~ 390 (399)
.|+.|++ .=.+-+|+|.+| ||||=..|-..
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~ 33 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTK 33 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHhC
Confidence 4899998 456778999999 68888888654
No 459
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=63.36 E-value=38 Score=24.02 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=12.8
Q ss_pred EEecCCChhhhhhHHHHH
Q 015833 203 YFSARWCIPCEKFMPKLL 220 (399)
Q Consensus 203 ~F~a~wC~~C~~~~~~l~ 220 (399)
.|+.+||++|.+..-.|.
T Consensus 3 ly~~~~~p~~~rv~~~L~ 20 (71)
T cd03060 3 LYSFRRCPYAMRARMALL 20 (71)
T ss_pred EEecCCCcHHHHHHHHHH
Confidence 466789999987654443
No 460
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=63.22 E-value=12 Score=36.39 Aligned_cols=22 Identities=18% Similarity=0.643 Sum_probs=20.4
Q ss_pred CeecCCCCCCCCceeEEcCCCC
Q 015833 359 PFICCDCDEQGSGWAYQCLECG 380 (399)
Q Consensus 359 ~~~c~~C~~~~~~w~~~c~~c~ 380 (399)
.+.|.+|.--...|.++|..|+
T Consensus 354 ~~~c~~cg~~~~~~~~~c~~c~ 375 (389)
T PRK11788 354 RYRCRNCGFTARTLYWHCPSCK 375 (389)
T ss_pred CEECCCCCCCCccceeECcCCC
Confidence 3789999999999999999996
No 461
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=61.93 E-value=3.9 Score=38.46 Aligned_cols=32 Identities=25% Similarity=0.692 Sum_probs=28.3
Q ss_pred eecCCCCC-CCCceeEEcCCC-CCCCcCcccccc
Q 015833 360 FICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRAV 391 (399)
Q Consensus 360 ~~c~~C~~-~~~~w~~~c~~c-~~~~~~~~~~~~ 391 (399)
-.||.|.+ .=-|=+|+|.+| ||||=..|-.+.
T Consensus 153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~ 186 (278)
T KOG4582|consen 153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN 186 (278)
T ss_pred ccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence 58999999 668999999999 799999998664
No 462
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=61.73 E-value=9.4 Score=35.19 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=27.4
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHh
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELR 62 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~ 62 (399)
.||+.+++..+.|||+|..+.=.|-.+...|.
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcC
Confidence 69999999999999999999866777666664
No 463
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=61.45 E-value=4 Score=24.80 Aligned_cols=24 Identities=33% Similarity=0.922 Sum_probs=14.4
Q ss_pred eecCCCCCCC---CceeEEcCCCCCCC
Q 015833 360 FICCDCDEQG---SGWAYQCLECGYEV 383 (399)
Q Consensus 360 ~~c~~C~~~~---~~w~~~c~~c~~~~ 383 (399)
|.|+.|...- +.=.-+|.+|+|.+
T Consensus 1 Y~C~~Cg~~~~~~~~~~irC~~CG~RI 27 (32)
T PF03604_consen 1 YICGECGAEVELKPGDPIRCPECGHRI 27 (32)
T ss_dssp EBESSSSSSE-BSTSSTSSBSSSS-SE
T ss_pred CCCCcCCCeeEcCCCCcEECCcCCCeE
Confidence 5678887432 22334699998875
No 464
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=61.30 E-value=16 Score=39.08 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=40.1
Q ss_pred CEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCCCcEEecccchhhhhhcccCCCCCh
Q 015833 239 DFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE 318 (399)
Q Consensus 239 ~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~ 318 (399)
+..||-.|.-.+.+.+...... .|- .-.+..+++-...|...++|-.+.....+. .++.
T Consensus 349 ~~pvvLgSATPSLES~~~~~~g-~y~--------~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~------------~lS~ 407 (730)
T COG1198 349 NAPVVLGSATPSLESYANAESG-KYK--------LLRLTNRAGRARLPRVEIIDMRKEPLETGR------------SLSP 407 (730)
T ss_pred CCCEEEecCCCCHHHHHhhhcC-ceE--------EEEccccccccCCCcceEEeccccccccCc------------cCCH
Confidence 5667777777676666555322 010 134556667233888889987766554421 2566
Q ss_pred HHHHHHHHHHH
Q 015833 319 AKLEFLEKQME 329 (399)
Q Consensus 319 ~~~~~l~~~~~ 329 (399)
..++++.+.++
T Consensus 408 ~Ll~~i~~~l~ 418 (730)
T COG1198 408 ALLEAIRKTLE 418 (730)
T ss_pred HHHHHHHHHHh
Confidence 66666655554
No 465
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.02 E-value=36 Score=34.99 Aligned_cols=47 Identities=19% Similarity=0.124 Sum_probs=27.5
Q ss_pred CEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCC
Q 015833 239 DFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPE 294 (399)
Q Consensus 239 ~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~ 294 (399)
+..+|..|.-.+.+.+...... ++.+ -.+.+.++-...|.+.++|-.
T Consensus 129 ~~~vil~SATPsles~~~~~~g--~~~~-------~~l~~r~~~~~~p~v~vid~~ 175 (505)
T TIGR00595 129 NCPVVLGSATPSLESYHNAKQK--AYRL-------LVLTRRVSGRKPPEVKLIDMR 175 (505)
T ss_pred CCCEEEEeCCCCHHHHHHHhcC--CeEE-------eechhhhcCCCCCeEEEEecc
Confidence 5678888877777766555332 1111 223334444667888888744
No 466
>PHA00626 hypothetical protein
Probab=58.87 E-value=8 Score=26.58 Aligned_cols=15 Identities=33% Similarity=0.762 Sum_probs=11.9
Q ss_pred CceeEEcCCCCCCCc
Q 015833 370 SGWAYQCLECGYEVH 384 (399)
Q Consensus 370 ~~w~~~c~~c~~~~~ 384 (399)
+.=.|.|..|+|.+-
T Consensus 20 ~snrYkCkdCGY~ft 34 (59)
T PHA00626 20 WSDDYVCCDCGYNDS 34 (59)
T ss_pred cCcceEcCCCCCeec
Confidence 345799999999864
No 467
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=58.62 E-value=26 Score=24.91 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=20.7
Q ss_pred EEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 015833 38 YFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 75 (399)
Q Consensus 38 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~ 75 (399)
.|+.+||++|++..-.|.. .|.+++++.|+.
T Consensus 3 ly~~~~~p~~~rv~~~L~~-------~gl~~e~~~v~~ 33 (71)
T cd03060 3 LYSFRRCPYAMRARMALLL-------AGITVELREVEL 33 (71)
T ss_pred EEecCCCcHHHHHHHHHHH-------cCCCcEEEEeCC
Confidence 4568899999887655443 344577776654
No 468
>PRK09301 circadian clock protein KaiB; Provisional
Probab=58.38 E-value=36 Score=26.77 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=50.4
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
++.++|=.|.+...+.....+..+.++.+++... .+++=.|.+-.. .+
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g---------~y~LeVIDv~~q-----------------------Pe 51 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKG---------VYALKVIDVLKN-----------------------PQ 51 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC---------ceEEEEEEcccC-----------------------Hh
Confidence 4567888888888999999999999998876532 355555554433 78
Q ss_pred HHHhCCCCccceEEEECCC
Q 015833 276 LTKYFDVQGIPCLVIIGPE 294 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~ 294 (399)
+++.+.+.++||++=..|.
T Consensus 52 lAE~~~IvATPTLIK~~P~ 70 (103)
T PRK09301 52 LAEEDKILATPTLAKILPP 70 (103)
T ss_pred HHhHCCeEEecHHhhcCCC
Confidence 9999999999998766543
No 469
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=57.44 E-value=4.9 Score=38.21 Aligned_cols=38 Identities=26% Similarity=0.705 Sum_probs=30.9
Q ss_pred CCCeecCCCC-CCCCceeEEcCCC-CCCCcCccccccCCC
Q 015833 357 GGPFICCDCD-EQGSGWAYQCLEC-GYEVHPKCVRAVDRG 394 (399)
Q Consensus 357 ~~~~~c~~C~-~~~~~w~~~c~~c-~~~~~~~~~~~~~~~ 394 (399)
+-+-.|.+|. |.-++.+|+|++| +|+|-+.|-+.--.|
T Consensus 238 ~hpv~cs~c~srs~~gfry~cq~C~nyqlcq~cfwrG~~g 277 (434)
T KOG4301|consen 238 FHPVECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWRGHAG 277 (434)
T ss_pred CCCccCcceecccccchhhhHhhcCCccccchhhccccCC
Confidence 3456899998 6679999999999 699999998875444
No 470
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=56.33 E-value=78 Score=25.13 Aligned_cols=48 Identities=10% Similarity=0.207 Sum_probs=32.7
Q ss_pred HhhHHHHHHHHHHHh-cCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCC----cCeEEEEcC
Q 015833 48 GNFTGVLVDVYEELR-NNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG----IPCLVVLQP 122 (399)
Q Consensus 48 ~~~~p~l~~l~~~~~-~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~----~P~~~lid~ 122 (399)
......+.+++++++ ++ +.++.+ |.+......+.||+.. .|.+.+++.
T Consensus 34 ~~~~~~~~~vAk~fk~gk---i~Fv~~------------------------D~~~~~~~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 34 NYWRNRVLKVAKDFPDRK---LNFAVA------------------------DKEDFSHELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred HHHHHHHHHHHHHCcCCe---EEEEEE------------------------cHHHHHHHHHHcCCCcccCCCCEEEEEeC
Confidence 445678888888887 33 555554 2222244677899974 899999885
No 471
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=55.72 E-value=36 Score=30.98 Aligned_cols=44 Identities=20% Similarity=0.173 Sum_probs=33.0
Q ss_pred cCCCCEEeccccCCCEEEEEEecCCCcccHhhHHHHHHHHHHHh
Q 015833 19 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELR 62 (399)
Q Consensus 19 d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~ 62 (399)
..+|..+.+-+..+++.++.|+-.-||+|.+..|.+.+.+....
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred cCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 44555555556666899999999999999888888887555543
No 472
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=54.91 E-value=48 Score=25.27 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=48.2
Q ss_pred cEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 015833 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 277 (399)
Q Consensus 198 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 277 (399)
++++=.|.+...+.+...+..+.++.+++... .+++=.|.+-.. .+++
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g---------~y~LeVIDv~~q-----------------------P~lA 50 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQG---------VYALKVIDVLKN-----------------------PQLA 50 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC---------ceEEEEEEcccC-----------------------HhHH
Confidence 46777777888899999999999988876532 255545544433 7899
Q ss_pred HhCCCCccceEEEECCC
Q 015833 278 KYFDVQGIPCLVIIGPE 294 (399)
Q Consensus 278 ~~~~v~~~P~~~lid~~ 294 (399)
+.+.+-++||++=..|.
T Consensus 51 E~~~IvATPtLIK~~P~ 67 (87)
T TIGR02654 51 EEDKILATPTLSKILPP 67 (87)
T ss_pred hHCCEEEecHHhhcCCC
Confidence 99999999998766543
No 473
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=54.72 E-value=20 Score=32.72 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=32.8
Q ss_pred CCCCCceeeccccCCcEEEEEEecCCChhhhhhHHHHHHHHHHHH
Q 015833 183 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIK 227 (399)
Q Consensus 183 ~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~ 227 (399)
..++. .+...+..++++++.|....||+|+...+.+.+.+....
T Consensus 71 ~~~~~-~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 71 TPDGK-DVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred cCCCC-cccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 55555 555555566889999999999999888888887555443
No 474
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=54.70 E-value=35 Score=30.96 Aligned_cols=40 Identities=13% Similarity=-0.007 Sum_probs=28.5
Q ss_pred EEEEEEe-cCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEe
Q 015833 34 VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 74 (399)
Q Consensus 34 ~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs 74 (399)
.+-|++| -.-||-|....+.|.++...+.... ++++.+-+
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~-~v~i~w~p 45 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV-RVEIRWRP 45 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHHHHhcCcce-eEEEEecc
Confidence 3444444 6779999999999999999987542 45555443
No 475
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=53.84 E-value=20 Score=31.15 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=22.0
Q ss_pred EEecCCChhhhhhHHHHHHHHHHHHhh
Q 015833 203 YFSARWCIPCEKFMPKLLSIYQKIKQN 229 (399)
Q Consensus 203 ~F~a~wC~~C~~~~~~l~~l~~~~~~~ 229 (399)
+|..|.|++|-...|.+.++..+|.++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~ 28 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK 28 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence 588999999999999999999999864
No 476
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=53.80 E-value=26 Score=25.69 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=43.6
Q ss_pred EEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCC
Q 015833 34 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 113 (399)
Q Consensus 34 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 113 (399)
++|.-|-+..-+...+....+.++-+.+.+. +.++=.| |...+.++++.++|.+
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~--~~~LeVI------------------------Dv~~~P~lAe~~~ivA 55 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLGG--PYELEVI------------------------DVLKQPQLAEEDKIVA 55 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcCC--cEEEEEE------------------------EcccCHhHHhhCCEEE
Confidence 3455565666688888888888888887633 3444444 3233388999999999
Q ss_pred cCeEEEEcC
Q 015833 114 IPCLVVLQP 122 (399)
Q Consensus 114 ~P~~~lid~ 122 (399)
+|+++=..+
T Consensus 56 tPtLvk~~P 64 (72)
T cd02978 56 TPTLVKVLP 64 (72)
T ss_pred echhhhcCC
Confidence 999875554
No 477
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.06 E-value=59 Score=24.01 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=42.1
Q ss_pred EEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCCCcCe
Q 015833 37 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPC 116 (399)
Q Consensus 37 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~ 116 (399)
+.|++..||-|......|.++- +..-+|.+-.+-..+++|..-. |....=+-.+.+|--++|.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~---------v~yd~VeIt~Sm~NlKrFl~lR--------Ds~~~Fd~vk~~gyiGIPa 67 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN---------VDYDFVEITESMANLKRFLHLR--------DSRPEFDEVKSNGYIGIPA 67 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC---------CCceeeehhhhhhhHHHHHhhh--------ccchhHHhhhhcCcccceE
Confidence 6789999999988777766532 3333455555555666655421 1110012235677788998
Q ss_pred EEEEcCCCCCCCee
Q 015833 117 LVVLQPYDDKDDAT 130 (399)
Q Consensus 117 ~~lid~~~~~G~i~ 130 (399)
+.+= +|+++
T Consensus 68 ll~~-----d~~vV 76 (85)
T COG4545 68 LLTD-----DGKVV 76 (85)
T ss_pred EEeC-----CCcEE
Confidence 7653 55555
No 478
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=52.91 E-value=11 Score=24.75 Aligned_cols=24 Identities=33% Similarity=1.001 Sum_probs=17.1
Q ss_pred eecCCCCCCCC---ceeEEcCCCCCCC
Q 015833 360 FICCDCDEQGS---GWAYQCLECGYEV 383 (399)
Q Consensus 360 ~~c~~C~~~~~---~w~~~c~~c~~~~ 383 (399)
|.|+.|...-. .=.-+|.+|++.+
T Consensus 3 Y~C~~Cg~~~~~~~~~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSKDVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCCCceECCCCCceE
Confidence 78999986433 3346699999876
No 479
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.35 E-value=23 Score=38.54 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=15.6
Q ss_pred CccceEEEECCCCcEEecc
Q 015833 283 QGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 283 ~~~P~~~lid~~G~i~~~~ 301 (399)
..+|...++|.+|++....
T Consensus 286 h~Lp~i~i~d~dG~in~~~ 304 (877)
T COG0525 286 HNLPLINIIDEDGRINEEA 304 (877)
T ss_pred CCCCceEEECCCCeeccCC
Confidence 4688899999999998554
No 480
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.25 E-value=4.4 Score=39.98 Aligned_cols=31 Identities=32% Similarity=0.895 Sum_probs=23.2
Q ss_pred CeecCCCCCCCCce---eEEcCCCCCCCcCcccc
Q 015833 359 PFICCDCDEQGSGW---AYQCLECGYEVHPKCVR 389 (399)
Q Consensus 359 ~~~c~~C~~~~~~w---~~~c~~c~~~~~~~~~~ 389 (399)
+--|.||+..--+. -|+|++|.|-+|-+|-.
T Consensus 56 PTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChe 89 (683)
T KOG0696|consen 56 PTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHE 89 (683)
T ss_pred CchhhhhhhheeccccCceeeeEEeehhhhhhcc
Confidence 55899998642111 36899999999999964
No 481
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=51.96 E-value=39 Score=26.30 Aligned_cols=20 Identities=5% Similarity=-0.036 Sum_probs=15.7
Q ss_pred EEEecCCCcccHhhHHHHHH
Q 015833 37 LYFSANWYPPCGNFTGVLVD 56 (399)
Q Consensus 37 v~F~a~wC~~C~~~~p~l~~ 56 (399)
..|+.++|+.|+.....|++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE 21 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 45779999999998766554
No 482
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=51.71 E-value=91 Score=25.07 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=53.0
Q ss_pred ccccCCCEEEEEEecCC--CcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHH
Q 015833 27 VSDLEGKVTALYFSANW--YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 104 (399)
Q Consensus 27 l~~~~gk~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 104 (399)
|+++.+|.-+|-.+|+. -+.=..++..|.+....+.+.+ +.++.|.-+...... -+. +......
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRd--i~v~~i~~~~~~~~~-----------~~~-~~~~~~~ 68 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERD--IVVIVITGDGARSPG-----------KPL-SPEDIQA 68 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCc--eEEEEEeCCcccccc-----------CcC-CHHHHHH
Confidence 55665554444445653 3344556677777666777664 777766433221110 111 2233378
Q ss_pred HHhhcCCC-CcCeEEEEcCCCCCCCeeec
Q 015833 105 LNRKFDIE-GIPCLVVLQPYDDKDDATLH 132 (399)
Q Consensus 105 l~~~~~v~-~~P~~~lid~~~~~G~i~~~ 132 (399)
+.+.|++. ..-+++||++ ||.+..+
T Consensus 69 lr~~l~~~~~~f~~vLiGK---DG~vK~r 94 (118)
T PF13778_consen 69 LRKRLRIPPGGFTVVLIGK---DGGVKLR 94 (118)
T ss_pred HHHHhCCCCCceEEEEEeC---CCcEEEe
Confidence 88999875 3468899999 9988765
No 483
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=51.42 E-value=15 Score=24.40 Aligned_cols=32 Identities=28% Similarity=0.628 Sum_probs=25.0
Q ss_pred cCCCCC-CCCceeEEcCCCCCCCcCccccccCC
Q 015833 362 CCDCDE-QGSGWAYQCLECGYEVHPKCVRAVDR 393 (399)
Q Consensus 362 c~~C~~-~~~~w~~~c~~c~~~~~~~~~~~~~~ 393 (399)
|.-|++ ...+..-.|+.|+--.|..|.-.+..
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~ 34 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEK 34 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHS
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChh
Confidence 455555 55778889999999999999976544
No 484
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=51.15 E-value=9 Score=24.75 Aligned_cols=14 Identities=43% Similarity=0.980 Sum_probs=11.2
Q ss_pred CceeEEcCCCCCCC
Q 015833 370 SGWAYQCLECGYEV 383 (399)
Q Consensus 370 ~~w~~~c~~c~~~~ 383 (399)
|.+.|+|.+|+..+
T Consensus 2 P~Yey~C~~Cg~~f 15 (42)
T PF09723_consen 2 PIYEYRCEECGHEF 15 (42)
T ss_pred CCEEEEeCCCCCEE
Confidence 67889999999543
No 485
>PRK09301 circadian clock protein KaiB; Provisional
Probab=51.07 E-value=28 Score=27.40 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=48.0
Q ss_pred CCCEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcC
Q 015833 31 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 110 (399)
Q Consensus 31 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 110 (399)
++.++|=-|.|..-+..++....+.++-+.+.... .++=.| |...+.++++.++
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~--y~LeVI------------------------Dv~~qPelAE~~~ 57 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGV--YALKVI------------------------DVLKNPQLAEEDK 57 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCc--eEEEEE------------------------EcccCHhHHhHCC
Confidence 45677777778888899999999999888765543 433333 3333388999999
Q ss_pred CCCcCeEEEEcC
Q 015833 111 IEGIPCLVVLQP 122 (399)
Q Consensus 111 v~~~P~~~lid~ 122 (399)
|.++|+++=+.+
T Consensus 58 IvATPTLIK~~P 69 (103)
T PRK09301 58 ILATPTLAKILP 69 (103)
T ss_pred eEEecHHhhcCC
Confidence 999999886654
No 486
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.73 E-value=7.2 Score=28.58 Aligned_cols=16 Identities=31% Similarity=0.818 Sum_probs=13.6
Q ss_pred CCCCceeEEcCCCCCC
Q 015833 367 EQGSGWAYQCLECGYE 382 (399)
Q Consensus 367 ~~~~~w~~~c~~c~~~ 382 (399)
.+-|++.|.|.+|++.
T Consensus 6 ~lMPtY~Y~c~~cg~~ 21 (82)
T COG2331 6 PLMPTYSYECTECGNR 21 (82)
T ss_pred ccccceEEeecccchH
Confidence 4678999999999975
No 487
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=50.23 E-value=6.3 Score=37.18 Aligned_cols=73 Identities=12% Similarity=0.229 Sum_probs=50.3
Q ss_pred cEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 015833 198 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 277 (399)
Q Consensus 198 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 277 (399)
-+|-+.||++|||..+..-|.+.-.+..|.. +...+ ++ ++.. ...+.
T Consensus 77 ~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-----------i~h~~--ve-------e~~~-------------lpsv~ 123 (319)
T KOG2640|consen 77 DYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-----------IQHFA--VE-------ESQA-------------LPSVF 123 (319)
T ss_pred CcccccchhcccCcccccCcccchhhhhccc-----------ccccc--HH-------HHhh-------------cccch
Confidence 4688899999999988888888776665542 11222 22 1111 14567
Q ss_pred HhCCCCccceEEEECCCCcEEecccc
Q 015833 278 KYFDVQGIPCLVIIGPEGKTVTKQGR 303 (399)
Q Consensus 278 ~~~~v~~~P~~~lid~~G~i~~~~~~ 303 (399)
..|++.+.|+..+.+..-..+++...
T Consensus 124 s~~~~~~~ps~~~~n~t~~~~~~~~r 149 (319)
T KOG2640|consen 124 SSYGIHSEPSNLMLNQTCPASYRGER 149 (319)
T ss_pred hccccccCCcceeeccccchhhcccc
Confidence 88999999999999877777766433
No 488
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=49.46 E-value=28 Score=31.18 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=53.2
Q ss_pred CCcEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 015833 196 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 275 (399)
Q Consensus 196 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 275 (399)
+.-.++|..|-+.-+-|..+...+.=|+.+|+ -+++.-|... .-.
T Consensus 158 ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-----------~vKFckikss------------------------~~g 202 (273)
T KOG3171|consen 158 KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-----------IVKFCKIKSS------------------------NTG 202 (273)
T ss_pred ceEEEEEEEecCCCchHHHHhhhHHHhhccCC-----------ceeEEEeeec------------------------ccc
Confidence 34467888999999999998888888888876 3455555432 134
Q ss_pred HHHhCCCCccceEEEECCCCcEEecc
Q 015833 276 LTKYFDVQGIPCLVIIGPEGKTVTKQ 301 (399)
Q Consensus 276 ~~~~~~v~~~P~~~lid~~G~i~~~~ 301 (399)
..++|..+++|++.++ ++|.++...
T Consensus 203 as~~F~~n~lP~LliY-kgGeLIgNF 227 (273)
T KOG3171|consen 203 ASDRFSLNVLPTLLIY-KGGELIGNF 227 (273)
T ss_pred chhhhcccCCceEEEe-eCCchhHHH
Confidence 5778899999999999 899887653
No 489
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=48.85 E-value=16 Score=25.17 Aligned_cols=24 Identities=33% Similarity=0.703 Sum_probs=19.1
Q ss_pred CCeecCCCC--------CCCCceeEEcCCCCC
Q 015833 358 GPFICCDCD--------EQGSGWAYQCLECGY 381 (399)
Q Consensus 358 ~~~~c~~C~--------~~~~~w~~~c~~c~~ 381 (399)
.+-+|.+|. +.....+|+|..|++
T Consensus 21 ~aLIC~~C~~hNGla~~~~~~~i~y~C~~Cg~ 52 (54)
T PF10058_consen 21 YALICSKCFSHNGLAPKEEFEEIQYRCPYCGA 52 (54)
T ss_pred eeEECcccchhhcccccccCCceEEEcCCCCC
Confidence 457888885 666778999999986
No 490
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=48.19 E-value=79 Score=25.24 Aligned_cols=20 Identities=30% Similarity=0.670 Sum_probs=18.3
Q ss_pred HHHHhhcCCCCcCeEEEEcC
Q 015833 103 KALNRKFDIEGIPCLVVLQP 122 (399)
Q Consensus 103 ~~l~~~~~v~~~P~~~lid~ 122 (399)
..+.++|+|+.+|++++...
T Consensus 61 P~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 61 PRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred hhHHhhCCceEcCEEEEEcC
Confidence 78899999999999999974
No 491
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=47.89 E-value=34 Score=26.09 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=45.6
Q ss_pred CEEEEEEecCCCcccHhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHhHhcCCCcccccCChHHHHHHHhhcCCC
Q 015833 33 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 112 (399)
Q Consensus 33 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~Vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 112 (399)
+++|=-|.|..-+.+++....+.++-+...... .++=.| |...+.++++.++|.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~--y~LeVI------------------------Dv~~qP~lAE~~~Iv 56 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGV--YALKVI------------------------DVLKNPQLAEEDKIL 56 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCc--eEEEEE------------------------EcccCHhHHhHCCEE
Confidence 456656667778889998888998888765442 433333 333338899999999
Q ss_pred CcCeEEEEcC
Q 015833 113 GIPCLVVLQP 122 (399)
Q Consensus 113 ~~P~~~lid~ 122 (399)
++|+++=..+
T Consensus 57 ATPtLIK~~P 66 (87)
T TIGR02654 57 ATPTLSKILP 66 (87)
T ss_pred EecHHhhcCC
Confidence 9999886655
No 492
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=47.66 E-value=6.2 Score=33.76 Aligned_cols=25 Identities=24% Similarity=0.606 Sum_probs=18.8
Q ss_pred eecCCCCC-----CCCceeEEcCCCCCCCc
Q 015833 360 FICCDCDE-----QGSGWAYQCLECGYEVH 384 (399)
Q Consensus 360 ~~c~~C~~-----~~~~w~~~c~~c~~~~~ 384 (399)
|+|+.|+. .+-.+-|+|..|+-.|-
T Consensus 110 Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 110 FICPNMCVRFTFNEAMELNFTCPRCGAMLD 139 (158)
T ss_pred EECCCCCcEeeHHHHHHcCCcCCCCCCEee
Confidence 89999982 23345789999998764
No 493
>PRK10220 hypothetical protein; Provisional
Probab=47.52 E-value=14 Score=29.21 Aligned_cols=25 Identities=32% Similarity=0.658 Sum_probs=19.0
Q ss_pred eecCCCCCCCCceeE------EcCCCCCCCcCcc
Q 015833 360 FICCDCDEQGSGWAY------QCLECGYEVHPKC 387 (399)
Q Consensus 360 ~~c~~C~~~~~~w~~------~c~~c~~~~~~~~ 387 (399)
|-|+.|. +.|.| .|.+|.|+.-+.=
T Consensus 4 P~CP~C~---seytY~d~~~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 4 PHCPKCN---SEYTYEDNGMYICPECAHEWNDAE 34 (111)
T ss_pred CcCCCCC---CcceEcCCCeEECCcccCcCCccc
Confidence 7788885 34555 4999999998774
No 494
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.03 E-value=38 Score=29.74 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=41.8
Q ss_pred cCCCCCceeeccccCC--cEEEEEEecCCChhhhhhHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 015833 182 LGHPPDEKVPVSSLVG--KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 247 (399)
Q Consensus 182 l~~~g~~~~~l~~~~g--k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 247 (399)
++..|+ .++++++-. +.|+...--+-|-.|+.....|.++..-+.+. ++.+++|--
T Consensus 35 l~~rg~-~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~---------Gv~Li~vg~ 92 (197)
T KOG4498|consen 35 LDSRGE-SVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDEL---------GVVLIAVGP 92 (197)
T ss_pred hhhcCc-eeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHh---------CCEEEEEec
Confidence 477888 899988744 34555555789999999999999985555544 788888763
No 495
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=46.00 E-value=88 Score=26.38 Aligned_cols=13 Identities=15% Similarity=0.087 Sum_probs=9.5
Q ss_pred CChhhhhhHHHHH
Q 015833 208 WCIPCEKFMPKLL 220 (399)
Q Consensus 208 wC~~C~~~~~~l~ 220 (399)
+|++|......|+
T Consensus 15 t~~~C~~ak~iL~ 27 (147)
T cd03031 15 TFEDCNNVRAILE 27 (147)
T ss_pred cChhHHHHHHHHH
Confidence 8999987655444
No 496
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=45.87 E-value=1.1e+02 Score=24.88 Aligned_cols=63 Identities=13% Similarity=0.207 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhCCCCccceEEEECCC
Q 015833 215 FMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPE 294 (399)
Q Consensus 215 ~~~~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~ 294 (399)
++-.+....+.++++ +++|.-.+...++.+|.+.-. ..++.+.-|...+|.++ + |
T Consensus 25 eL~~~a~~~~~Lk~~---------gv~v~RyNL~~~P~aF~~n~~-------------V~~~L~~~G~e~LPitl-V--d 79 (123)
T PF06953_consen 25 ELVRFAADLDWLKEQ---------GVEVERYNLAQNPQAFVENPE-------------VNQLLQTEGAEALPITL-V--D 79 (123)
T ss_dssp HHHHHHHHHHHHHHT---------T-EEEEEETTT-TTHHHHSHH-------------HHHHHHHH-GGG-SEEE-E--T
T ss_pred HHHHHHHHHHHHHhC---------CceEEEEccccCHHHHHhCHH-------------HHHHHHHcCcccCCEEE-E--C
Confidence 555666667777765 899999998877765544311 24555666889999774 4 6
Q ss_pred CcEEeccc
Q 015833 295 GKTVTKQG 302 (399)
Q Consensus 295 G~i~~~~~ 302 (399)
|+|+....
T Consensus 80 Geiv~~G~ 87 (123)
T PF06953_consen 80 GEIVKTGR 87 (123)
T ss_dssp TEEEEESS
T ss_pred CEEEEecC
Confidence 99987753
No 497
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=45.64 E-value=9.1 Score=26.68 Aligned_cols=20 Identities=40% Similarity=1.252 Sum_probs=14.0
Q ss_pred ecCCCCCCCCceeEEcCCCCCC
Q 015833 361 ICCDCDEQGSGWAYQCLECGYE 382 (399)
Q Consensus 361 ~c~~C~~~~~~w~~~c~~c~~~ 382 (399)
.|-.|.++|. .|+|..|+|.
T Consensus 40 Rc~~CRk~g~--~Y~Cp~CGF~ 59 (61)
T COG2888 40 RCAKCRKLGN--PYRCPKCGFE 59 (61)
T ss_pred hhhhHHHcCC--ceECCCcCcc
Confidence 3445556666 4889999985
No 498
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=44.04 E-value=48 Score=28.56 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=24.5
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHH
Q 015833 200 VGLYFSARWCIPCEKFMPKLLSIYQKIK 227 (399)
Q Consensus 200 vll~F~a~wC~~C~~~~~~l~~l~~~~~ 227 (399)
.|.+|+..-||+|-...+.|.++.+++.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~ 28 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYP 28 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 3667888899999999999999999884
No 499
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=43.86 E-value=60 Score=25.51 Aligned_cols=20 Identities=5% Similarity=-0.084 Sum_probs=15.6
Q ss_pred EEEecCCCcccHhhHHHHHH
Q 015833 37 LYFSANWYPPCGNFTGVLVD 56 (399)
Q Consensus 37 v~F~a~wC~~C~~~~p~l~~ 56 (399)
..|+.++|+.|+.....|.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 46779999999997766554
No 500
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=43.25 E-value=45 Score=27.42 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=15.5
Q ss_pred EEEEecCCCcccHhhHHHHHH
Q 015833 36 ALYFSANWYPPCGNFTGVLVD 56 (399)
Q Consensus 36 lv~F~a~wC~~C~~~~p~l~~ 56 (399)
+..|..++|+.|+.....|.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~ 22 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 345678999999997665543
Done!