BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015836
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RKG|A Chain A, Structural And Functional Characterization Of The Yeast
Mg2+ Channel Mrs2
Length = 261
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 35/176 (19%)
Query: 94 TILGREKAIVVNLEQIRCIITADEVLLLNSLDSY------VLQYVVELQRRLTAAGVNEV 147
TI+ + IV+NL I+ +I D+V + ++ + VL Y +L+ +L++ N
Sbjct: 64 TIMCKPNCIVINLLHIKALIERDKVYVFDTTNPSAAAKLSVLMY--DLESKLSSTKNNSQ 121
Query: 148 WQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLL 207
+ R +++F N ALE + L SQ +L
Sbjct: 122 FYEH--------RALESIFINV--------MSALETDFK-----LHSQIC------IQIL 154
Query: 208 DELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKS 263
++L ++++ L L + L ++ +RD +++L+++D D+A MYLT KKS
Sbjct: 155 NDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS 210
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 321 STTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQL 365
S D+ +LEML+E Y+ D + + SL + I TE+ +NI L
Sbjct: 210 SPKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIIL 254
>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|B Chain B, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|C Chain C, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|D Chain D, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|E Chain E, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|F Chain F, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|G Chain G, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|H Chain H, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|O Chain O, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|Q Chain Q, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3QV1|A Chain A, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|B Chain B, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|C Chain C, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|D Chain D, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|E Chain E, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|F Chain F, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3RVD|A Chain A, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|B Chain B, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|C Chain C, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|D Chain D, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|E Chain E, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|F Chain F, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|G Chain G, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|H Chain H, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|O Chain O, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|Q Chain Q, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana
Length = 337
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 165 VFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEA 203
V N +P LP++ +++ +E F+D + A IEA
Sbjct: 77 VVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEA 115
>pdb|3K1T|A Chain A, Crystal Structure Of Putative Gamma-Glutamylcysteine
Synthetase (Yp_546622.1) From Methylobacillus
Flagellatus Kt At 1.90 A Resolution
Length = 432
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 162 FDNVFGNTSPDYLPFEFRALEVALEAAC 189
F F N +PD+LP +A VA+E C
Sbjct: 65 FPGGFNNLNPDFLPLCIQAAXVAVEKIC 92
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 17/98 (17%)
Query: 153 DTNRRRS-RNFDNVFGNTSPDYLPFEFRAL-------EVALEAACTFLD--SQAAELEIE 202
+TNRRR+ + N+ +P+ + E RA+ E LEA + D + AELE+
Sbjct: 560 ETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPLEADLSGEDLRERIAELELA 619
Query: 203 AYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVR 240
+ L+ ER RL+ + AL R+Q VR
Sbjct: 620 MW-------QAAEALDFERAARLRDEIRALEARLQGVR 650
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 17/98 (17%)
Query: 153 DTNRRRS-RNFDNVFGNTSPDYLPFEFRAL-------EVALEAACTFLD--SQAAELEIE 202
+TNRRR+ + N+ +P+ + E RA+ E LEA + D + AELE+
Sbjct: 561 ETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPLEADLSGEDLRERIAELELA 620
Query: 203 AYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVR 240
+ L+ ER RL+ + AL R+Q VR
Sbjct: 621 MW-------QAAEALDFERAARLRDEIRALEARLQGVR 651
>pdb|1U6I|A Chain A, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|B Chain B, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|C Chain C, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|D Chain D, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|E Chain E, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|F Chain F, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|G Chain G, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|H Chain H, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|I Chain I, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|J Chain J, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|K Chain K, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|L Chain L, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6J|A Chain A, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|B Chain B, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|C Chain C, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|D Chain D, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|E Chain E, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|F Chain F, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|G Chain G, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|H Chain H, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|I Chain I, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|J Chain J, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|K Chain K, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|L Chain L, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|3IQE|A Chain A, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|B Chain B, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|C Chain C, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|D Chain D, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|E Chain E, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|F Chain F, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQF|A Chain A, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|B Chain B, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|C Chain C, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|D Chain D, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|E Chain E, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|F Chain F, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|G Chain G, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|H Chain H, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|I Chain I, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|J Chain J, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|K Chain K, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|L Chain L, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQZ|A Chain A, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|B Chain B, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|C Chain C, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|D Chain D, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|E Chain E, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|F Chain F, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
Length = 283
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 303 EKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTE 358
E+ + I S HE MR + D ELE +A + K+ S +++++D E
Sbjct: 228 ERYVPIVASAHEMMRKAAELADEARELEKSNDAVLRTPHAPDGKVLSKRKFMEDPE 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,661,285
Number of Sequences: 62578
Number of extensions: 341577
Number of successful extensions: 813
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 803
Number of HSP's gapped (non-prelim): 14
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)