Query 015836
Match_columns 399
No_of_seqs 146 out of 357
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 01:20:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 1.8E-86 3.8E-91 659.8 27.2 311 41-396 56-367 (414)
2 PF01544 CorA: CorA-like Mg2+ 97.7 0.0033 7.2E-08 60.6 18.1 218 50-378 4-236 (292)
3 TIGR00383 corA magnesium Mg(2+ 96.3 0.27 5.9E-06 48.6 17.5 212 68-383 41-265 (318)
4 COG0598 CorA Mg2+ and Co2+ tra 94.7 2.3 5E-05 42.6 17.3 219 50-381 33-267 (322)
5 PRK09546 zntB zinc transporter 92.3 6.9 0.00015 39.1 16.0 68 180-248 143-210 (324)
6 PF04012 PspA_IM30: PspA/IM30 73.5 62 0.0013 30.4 11.9 42 223-264 54-96 (221)
7 PRK11085 magnesium/nickel/coba 61.0 1.9E+02 0.0041 29.2 18.3 49 333-384 216-264 (316)
8 PF05591 DUF770: Protein of un 57.0 19 0.00041 32.9 4.7 39 218-256 110-151 (157)
9 KOG3684 Ca2+-activated K+ chan 53.8 97 0.0021 33.1 9.8 43 214-256 383-425 (489)
10 PF12325 TMF_TATA_bd: TATA ele 52.4 1.6E+02 0.0034 25.7 9.5 38 220-257 68-112 (120)
11 PF12128 DUF3584: Protein of u 51.8 2.4E+02 0.0053 33.6 13.9 142 177-362 722-872 (1201)
12 PF10157 DUF2365: Uncharacteri 49.2 2.1E+02 0.0045 26.0 10.7 29 184-212 49-77 (149)
13 TIGR03358 VI_chp_5 type VI sec 48.2 25 0.00054 32.3 4.0 39 218-256 111-152 (159)
14 PF07889 DUF1664: Protein of u 46.0 1.3E+02 0.0029 26.5 8.1 31 185-215 41-71 (126)
15 PF04136 Sec34: Sec34-like fam 45.2 2.1E+02 0.0045 25.9 9.5 38 219-256 27-64 (157)
16 PF07106 TBPIP: Tat binding pr 44.1 1.6E+02 0.0035 26.5 8.8 63 175-241 71-137 (169)
17 PF05377 FlaC_arch: Flagella a 44.1 35 0.00075 25.9 3.5 31 227-257 14-44 (55)
18 PF08317 Spc7: Spc7 kinetochor 44.0 3.5E+02 0.0076 27.2 13.1 44 343-389 274-317 (325)
19 TIGR02132 phaR_Bmeg polyhydrox 41.4 1.7E+02 0.0036 27.5 8.2 59 183-246 75-133 (189)
20 KOG0971 Microtubule-associated 40.8 4.7E+02 0.01 30.6 13.0 95 169-265 361-460 (1243)
21 PF06103 DUF948: Bacterial pro 35.9 2.3E+02 0.0049 22.7 8.2 66 179-244 11-85 (90)
22 PF08227 DASH_Hsk3: DASH compl 33.1 70 0.0015 23.3 3.6 26 339-364 3-28 (45)
23 COG3516 Predicted component of 32.9 48 0.0011 30.6 3.3 39 218-256 116-157 (169)
24 TIGR02976 phageshock_pspB phag 30.5 92 0.002 25.0 4.2 36 212-251 34-69 (75)
25 PRK09458 pspB phage shock prot 30.3 87 0.0019 25.3 4.0 31 337-367 41-71 (75)
26 PF04504 DUF573: Protein of un 28.7 92 0.002 26.0 4.2 59 177-235 12-71 (98)
27 PF05597 Phasin: Poly(hydroxya 28.6 4.2E+02 0.009 23.5 8.8 66 181-246 59-128 (132)
28 PRK10132 hypothetical protein; 28.0 1.2E+02 0.0026 25.9 4.8 26 228-253 6-31 (108)
29 PF10083 DUF2321: Uncharacteri 27.8 4.4E+02 0.0096 24.2 8.6 74 172-247 76-150 (158)
30 PF12761 End3: Actin cytoskele 26.6 3.8E+02 0.0083 25.4 8.3 12 237-248 131-142 (195)
31 KOG4643 Uncharacterized coiled 26.3 2.4E+02 0.0051 33.2 7.9 77 171-260 160-237 (1195)
32 PF14584 DUF4446: Protein of u 26.2 1.5E+02 0.0033 26.8 5.4 43 324-366 39-81 (151)
33 PF10234 Cluap1: Clusterin-ass 26.1 4.3E+02 0.0094 26.3 8.9 81 173-257 155-238 (267)
34 PF01442 Apolipoprotein: Apoli 25.9 4.5E+02 0.0097 22.9 10.8 9 132-140 14-22 (202)
35 PF10073 DUF2312: Uncharacteri 25.9 2.9E+02 0.0062 22.3 6.2 18 323-340 55-72 (74)
36 KOG3506 40S ribosomal protein 25.9 40 0.00086 25.6 1.3 26 43-78 12-37 (56)
37 PF06667 PspB: Phage shock pro 25.4 1.4E+02 0.003 24.1 4.4 34 213-250 35-68 (75)
38 PF08580 KAR9: Yeast cortical 24.9 1E+03 0.022 26.9 12.6 33 176-209 225-257 (683)
39 PF06825 HSBP1: Heat shock fac 24.1 2.3E+02 0.005 21.4 5.1 23 340-362 23-45 (54)
40 TIGR01834 PHA_synth_III_E poly 23.4 4.6E+02 0.01 26.8 8.7 29 220-248 289-317 (320)
41 PF06667 PspB: Phage shock pro 23.3 1.3E+02 0.0029 24.1 4.0 31 337-367 41-71 (75)
42 PF08970 Sda: Sporulation inhi 23.2 69 0.0015 23.5 2.1 13 330-342 7-19 (46)
43 PF11945 WASH_WAHD: WAHD domai 21.2 3.3E+02 0.0072 27.4 7.2 55 199-262 30-84 (297)
44 PF05667 DUF812: Protein of un 20.4 6.9E+02 0.015 27.7 10.0 36 220-256 363-399 (594)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-86 Score=659.81 Aligned_cols=311 Identities=61% Similarity=0.853 Sum_probs=266.1
Q ss_pred cccccCCCcceEEEECCCCCeEEEEeehhhhhhhcCCCCCcccCcCCCCCCCceeeecCCeeEeecccceeeeecCeeEe
Q 015836 41 GLKKRGQGLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLL 120 (399)
Q Consensus 41 ~~~~~~~~~r~w~~~D~~G~~~~~e~~K~~l~~~~gL~~RDLR~LDp~~~~PssIl~R~~aIlvnLe~IrAIIt~d~VLL 120 (399)
+.+|+++|+|+|++||++|+++..+++|++||+++||+|||||++||+++||++|++|++|||+||||||||||+|+|+|
T Consensus 56 ~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeVll 135 (414)
T KOG2662|consen 56 VSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEVLL 135 (414)
T ss_pred cccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeehhheeE
Confidence 55677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCChhHHHHHHHHHHhhcccCCCCcccccCCccccccCCcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 015836 121 LNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELE 200 (399)
Q Consensus 121 fd~~~~~v~~fl~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFEfrALEa~L~~v~s~Le~e~~~Le 200 (399)
||+.++ |.++..+++++|.....+...|-.++ ...++.+||||||||+||+++|++|++++.+||
T Consensus 136 ~d~~~~-v~~~~~el~~~l~~~~~~~~~q~s~~--------------~~~~~~lPFEFrALE~aLe~~~s~L~~~~~~Le 200 (414)
T KOG2662|consen 136 LDSLDP-VIPYNEELQRRLPVELESRGNQLSSD--------------GGSKDELPFEFRALEVALEAACSFLDSRLSELE 200 (414)
T ss_pred eccccc-cchHHHHHHHHhcccccccccccCCC--------------CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988 99999999999987643321111111 012468999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCHHHHhhcccccccccccccccCccccccccC
Q 015836 201 IEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYRS 280 (399)
Q Consensus 201 ~~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddDeDMa~MyLT~k~~~~~~~~~~~~~~~~~~~ 280 (399)
+.++++||+|+++|++.||++||.+|++|++|.+|||+|||+|+|+||||+|||+||||+|+.+.+
T Consensus 201 ~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~-------------- 266 (414)
T KOG2662|consen 201 TEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQAS-------------- 266 (414)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999997632
Q ss_pred CCccccCCCCCCCCCCCchhhhhhhhhhhhhccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 015836 281 NDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDF 360 (399)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~eElEmLLEaYf~qiD~~~~~l~~L~e~IddTEd~ 360 (399)
.+.++|++|+.....++. ++...+ +.-...+|+||+||||||||+|||+++||+++|+|||||||||
T Consensus 267 ---~~~~~~~sp~~~~~~~r~--------~~~~~~--s~~~~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~ 333 (414)
T KOG2662|consen 267 ---SPESAPTSPTIKAGISRA--------KSNRAS--STVRGEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDI 333 (414)
T ss_pred ---ccccCCCCccccCCccch--------hhcccc--hhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 133455555543322211 000000 0001278999999999999999999999999999999999999
Q ss_pred hHHhcccCcccccchhcccccccee-eeeehhhhhcc
Q 015836 361 INIQLVCFFSIDNKLCFFSPVLALK-FEFRLVACYAA 396 (399)
Q Consensus 361 InI~LD~~~~~RN~Li~~el~Lsl~-~~~~~~~~~~~ 396 (399)
|||+||+ +||+||||+|+|+++ |++++.+..||
T Consensus 334 InI~LDs---~RN~LiqleL~Lt~gT~~~s~~~~va~ 367 (414)
T KOG2662|consen 334 INIQLDS---NRNELIQLELLLTIGTFCLSVFSVVAG 367 (414)
T ss_pred HHHHhcc---chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999995 66665555443
No 2
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=97.69 E-value=0.0033 Score=60.55 Aligned_cols=218 Identities=19% Similarity=0.222 Sum_probs=148.3
Q ss_pred ceEEEECCCCCeEEEEeehhhhhhhcCCCCCccc-CcCCCCCCCceeeecCCeeEeec--------------ccceeeee
Q 015836 50 RSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLR-LLDPLFVYPSTILGREKAIVVNL--------------EQIRCIIT 114 (399)
Q Consensus 50 r~w~~~D~~G~~~~~e~~K~~l~~~~gL~~RDLR-~LDp~~~~PssIl~R~~aIlvnL--------------e~IrAIIt 114 (399)
-.|+-+...... ....|.+++|+++..+. .+++.. .| .+-.=++.+++.+ .+|..+++
T Consensus 4 ~~Wi~~~~~~~~-----~~~~l~~~~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 76 (292)
T PF01544_consen 4 FVWIDLSGPDDE-----ELEWLAEEFGLHPLTIEDALDPEE-RP-RIEVFDDYLFIVLRAPEYEEEDDIDEESPLSFILG 76 (292)
T ss_dssp -EEEEEETTTCH-----HHHHHHHTTTS-HHHHHHHCCTSS-SS-EEEEETTEEEEEEEEEEESTTCCECCEEEEEEEEE
T ss_pred cEEEEEeCCCHH-----HHHHHHHHhCcCHhHHHHHhCCCc-CC-EEEEECCeEEEEEEEcchhhcccccccceEEEEEe
Confidence 356666444332 34557888999987776 455432 22 2333333333322 25678888
Q ss_pred cCeeEeecCCChhHHHHHHHHHHhhcccCCCCcccccCCccccccCCcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 015836 115 ADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDS 194 (399)
Q Consensus 115 ~d~VLLfd~~~~~v~~fl~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFEfrALEa~L~~v~s~Le~ 194 (399)
.+.++-+..... +++.++..++.... ...+.-..++..+|..++..+..
T Consensus 77 ~~~lit~~~~~~---~~~~~~~~~~~~~~----------------------------~~~~~~~~ll~~il~~~~~~~~~ 125 (292)
T PF01544_consen 77 DNFLITVHRDPL---PFIDELRERLESRN----------------------------ERPSSPEDLLYAILDEIVDDYFE 125 (292)
T ss_dssp TTEEEEEESSSS---HCHHHHHHHHHSTT----------------------------CSCSSHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCC---hHHHHHHHHhhccC----------------------------CCCCCHHHHHHHHHHHHHHHHHH
Confidence 888888876542 23344444444110 11233457799999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCHHHHhhcccccccccccccccCccc
Q 015836 195 QAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQS 274 (399)
Q Consensus 195 e~~~Le~~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddDeDMa~MyLT~k~~~~~~~~~~~~~ 274 (399)
.+..++.....+=+.+.+.-....+.++..+++.+..+..-+...++++.+++. ....
T Consensus 126 ~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~----------~~~~------------ 183 (292)
T PF01544_consen 126 VLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLR----------RDDS------------ 183 (292)
T ss_dssp HHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------CCCS------------
T ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----------hhhh------------
Confidence 988888887666666655556677899999999999999999999999985554 0000
Q ss_pred cccccCCCccccCCCCCCCCCCCchhhhhhhhhhhhhccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015836 275 VLGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYI 354 (399)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~eElEmLLEaYf~qiD~~~~~l~~L~e~I 354 (399)
..-.++....++....++..+.+.++.+++.+
T Consensus 184 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (292)
T PF01544_consen 184 ------------------------------------------------PFISDEDKEYLRDLLDRIERLLERAESLRERL 215 (292)
T ss_dssp ------------------------------------------------TTSHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112234448888899999999999999999
Q ss_pred HhHHHhhHHhcccCcccccchhcc
Q 015836 355 DDTEDFINIQLVCFFSIDNKLCFF 378 (399)
Q Consensus 355 ddTEd~InI~LD~~~~~RN~Li~~ 378 (399)
++..+.+.-.++. +.|+.|+.
T Consensus 216 ~~l~~~~~~~~~~---~~n~~m~~ 236 (292)
T PF01544_consen 216 ESLQDLYQSKLSN---RQNRVMKV 236 (292)
T ss_dssp HHHHHHHHHHHTC---HHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHH
Confidence 9999999999999 99999985
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=96.33 E-value=0.27 Score=48.64 Aligned_cols=212 Identities=16% Similarity=0.131 Sum_probs=131.8
Q ss_pred hhhhhhhcCCCCCcccCc-CCCCCCC------c------eeeecCCeeEeecccceeeeecCeeEeecCCChhHHHHHHH
Q 015836 68 KFSMMRRCDLPARDLRLL-DPLFVYP------S------TILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVE 134 (399)
Q Consensus 68 K~~l~~~~gL~~RDLR~L-Dp~~~~P------s------sIl~R~~aIlvnLe~IrAIIt~d~VLLfd~~~~~v~~fl~~ 134 (399)
...+.+.+|+++-++.-+ |+. ..| . .+..+...--+...++.-+++.+.++-+..... +.+..
T Consensus 41 ~~~l~~~~~l~~~~~ed~~~~~-~~~k~e~~~~~~~i~~~~~~~~~~~~~~~~~l~~~l~~~~liTv~~~~~---~~~~~ 116 (318)
T TIGR00383 41 LAKLGQFFAIHPLALEDILNSP-QRPKVEEDEDHLFIISFFLNEDEDDTFETEQVSFILGKNLLFTIHEREL---PAFDS 116 (318)
T ss_pred HHHHHHHcCcCcchHHHhhCCC-CCCcEEEECCEEEEEEEeeeccCCCcceeEEEEEEEECCEEEEEEcCCC---CcHHH
Confidence 356777899998876633 332 111 0 111222111234566777787777777754332 22333
Q ss_pred HHHhhcccCCCCcccccCCccccccCCcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015836 135 LQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKI 214 (399)
Q Consensus 135 L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFEfrALEa~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~I 214 (399)
+.+++...... ...-| -..|-.+|..++..+..-+..++..+..+=+.+.++-
T Consensus 117 ~~~~~~~~~~~-------------------------~~~~~--~~ll~~il~~ivd~~~~~l~~l~~~~~~le~~l~~~~ 169 (318)
T TIGR00383 117 IRERIRTSQKV-------------------------FEKGA--DYLLYDIFDAIIDSYFPLLENIEDELEELEDEIISGP 169 (318)
T ss_pred HHHHHHhCchh-------------------------hhCCH--HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444321100 00012 2467888888888888888888888766655554444
Q ss_pred ChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCHHHHhhcccccccccccccccCccccccccCCCccccCCCCCCCC
Q 015836 215 STLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYRSNDIQSISAPVSPVS 294 (399)
Q Consensus 215 s~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddDeDMa~MyLT~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (399)
....++++..+|+.|..+..-+...+++++.+...+. . .
T Consensus 170 ~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~----------~-~------------------------------ 208 (318)
T TIGR00383 170 TSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTH----------L-P------------------------------ 208 (318)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----------c-c------------------------------
Confidence 5567899999999999999999999999888764211 0 0
Q ss_pred CCCchhhhhhhhhhhhhccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHhcccCcccccc
Q 015836 295 SPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLVCFFSIDNK 374 (399)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~eElEmLLEaYf~qiD~~~~~l~~L~e~IddTEd~InI~LD~~~~~RN~ 374 (399)
.-.++....+..-..+++.+.+.++.+++.++..-|...-..+. +.|+
T Consensus 209 -----------------------------~~~~~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~---~~N~ 256 (318)
T TIGR00383 209 -----------------------------IQTEEVREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNN---KMNE 256 (318)
T ss_pred -----------------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 00022233344445567888888888899999998888888999 9999
Q ss_pred hhccccccc
Q 015836 375 LCFFSPVLA 383 (399)
Q Consensus 375 Li~~el~Ls 383 (399)
.|+.=-+++
T Consensus 257 ~mk~LTvvt 265 (318)
T TIGR00383 257 IMKILTVVS 265 (318)
T ss_pred HHHHHHHHH
Confidence 998533333
No 4
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=94.66 E-value=2.3 Score=42.65 Aligned_cols=219 Identities=17% Similarity=0.163 Sum_probs=138.3
Q ss_pred ceEEEECCCCCeEEEEeehhhhhhhcCCCCCcccCc-CCCCCCCceeeecCCeeEe--------------ecccceeeee
Q 015836 50 RSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRLL-DPLFVYPSTILGREKAIVV--------------NLEQIRCIIT 114 (399)
Q Consensus 50 r~w~~~D~~G~~~~~e~~K~~l~~~~gL~~RDLR~L-Dp~~~~PssIl~R~~aIlv--------------nLe~IrAIIt 114 (399)
.-|+-++..+.. ....|-+.+|||+-.+.-+ |.. ..| .|...++...+ -.+++.-+++
T Consensus 33 ~~Widl~~p~~~-----e~~~l~~~~~l~~~~~ed~~~~~-~r~-r~e~~d~~~~i~~~~~~~~~~~~~~~~~~v~~i~~ 105 (322)
T COG0598 33 FVWIDLVEPDDE-----ELEWLAKTFGLHPLALEDLLDAE-QRP-KVERYDDYLFIVLRDVNLEEEEDKAETEPVSIIVG 105 (322)
T ss_pred eEEEECCCCCHH-----HHHHHHHhcCCCcchHHHHhCcc-cCC-ceEeeCCEEEEEEEeeccccccccccceeEEEEEe
Confidence 447766554442 2245666799998777653 322 112 23333322111 3566777777
Q ss_pred cCeeEeecCCC-hhHHHHHHHHHHhhcccCCCCcccccCCccccccCCcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 015836 115 ADEVLLLNSLD-SYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLD 193 (399)
Q Consensus 115 ~d~VLLfd~~~-~~v~~fl~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFEfrALEa~L~~v~s~Le 193 (399)
.+.++-+.... +.... +..|+...... ..-| ..++..+|..+...+-
T Consensus 106 ~~~liT~r~~~~~~~~~----vr~r~~~~~~~--------------------------~~~~--~~l~~~lld~i~d~~~ 153 (322)
T COG0598 106 KRRLITIRHRPLPAFDR----VRERLEKGTLL--------------------------TRGA--DELLYALLDAIVDNYF 153 (322)
T ss_pred CCEEEEEecCCCccHHH----HHHHHhccccc--------------------------cCCH--HHHHHHHHHHHHHhhH
Confidence 77777766532 22333 33343321000 0011 2567777887787777
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCHHHHhhcccccccccccccccCcc
Q 015836 194 SQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQ 273 (399)
Q Consensus 194 ~e~~~Le~~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddDeDMa~MyLT~k~~~~~~~~~~~~ 273 (399)
.-+..++.....+=+.+..+-+...|+++..+++.|..+..-+...++++..++.++.+ +
T Consensus 154 ~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~---------~----------- 213 (322)
T COG0598 154 PVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLD---------W----------- 213 (322)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcc---------c-----------
Confidence 77777777766655555554445789999999999999999999999999888876654 0
Q ss_pred ccccccCCCccccCCCCCCCCCCCchhhhhhhhhhhhhccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015836 274 SVLGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEY 353 (399)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~eElEmLLEaYf~qiD~~~~~l~~L~e~ 353 (399)
-.+|...+++-=+-++..+...++.+++-
T Consensus 214 ---------------------------------------------------~~~~~~~~l~dv~~~~~~~~~~~~~~~~~ 242 (322)
T COG0598 214 ---------------------------------------------------LSEEDREYLRDVLDHLTQLIEMLEALRER 242 (322)
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01333445666666777777888888888
Q ss_pred HHhHHHhhHHhcccCcccccchhccccc
Q 015836 354 IDDTEDFINIQLVCFFSIDNKLCFFSPV 381 (399)
Q Consensus 354 IddTEd~InI~LD~~~~~RN~Li~~el~ 381 (399)
+...-|...-.+.+ +.|++|++=-+
T Consensus 243 l~~l~d~~~s~is~---~~N~imk~LTi 267 (322)
T COG0598 243 LSSLLDAYLSLINN---NQNEIMKILTI 267 (322)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 88888888888888 99999984333
No 5
>PRK09546 zntB zinc transporter; Reviewed
Probab=92.26 E-value=6.9 Score=39.12 Aligned_cols=68 Identities=19% Similarity=0.164 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhC
Q 015836 180 ALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMD 248 (399)
Q Consensus 180 ALEa~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLd 248 (399)
.|-.+|..++..+..-+..++.....+=+.+-..- ...++++-.+|+.+..+..-+.-.|+++..+..
T Consensus 143 ll~~lld~ivd~~~~~l~~i~~~ld~lE~~l~~~~-~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~ 210 (324)
T PRK09546 143 WLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQ-IPPRGELALLRKQLIVMRRYMAPQRDVFARLAS 210 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677777777777777777766555433342221 124678999999999999999999999988875
No 6
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=73.47 E-value=62 Score=30.39 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=28.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhC-CHHHHhhccccccccc
Q 015836 223 RRLKSRLVALTRRVQKVRDEIEQLMD-DDGDMAEMYLTEKKSR 264 (399)
Q Consensus 223 r~lK~rL~~l~~rvq~VRd~LeelLd-dDeDMa~MyLT~k~~~ 264 (399)
..+++++......+.+..+-...-|. .++|+|.-+|.++...
T Consensus 54 ~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~ 96 (221)
T PF04012_consen 54 KRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADL 96 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566666666666665555554444 4889999999998743
No 7
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=61.00 E-value=1.9e+02 Score=29.22 Aligned_cols=49 Identities=14% Similarity=0.013 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHhcccCcccccchhccccccce
Q 015836 333 LEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLVCFFSIDNKLCFFSPVLAL 384 (399)
Q Consensus 333 LEaYf~qiD~~~~~l~~L~e~IddTEd~InI~LD~~~~~RN~Li~~el~Lsl 384 (399)
+-.|+..++.+...++.+++.+..+-|...-.++. +.|+.|++=-++++
T Consensus 216 ~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~---~~N~~mk~lTv~s~ 264 (316)
T PRK11085 216 AREILRDIESLLPHNESLFQKVNFLMQAAMGFINI---EQNRIIKIFSVVSV 264 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999 99999985444443
No 8
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=57.00 E-value=19 Score=32.91 Aligned_cols=39 Identities=15% Similarity=0.394 Sum_probs=31.4
Q ss_pred hHHHHHHHhhhHHHHHHHH---HHHHHHHHHhhCCHHHHhhc
Q 015836 218 NLERVRRLKSRLVALTRRV---QKVRDEIEQLMDDDGDMAEM 256 (399)
Q Consensus 218 ~LerLr~lK~rL~~l~~rv---q~VRd~LeelLddDeDMa~M 256 (399)
.|.+|..++++|..|.+.+ ..+|+.|+++|.|.+.++.+
T Consensus 110 ~L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~~~~~~~~l 151 (157)
T PF05591_consen 110 ELRKLLELREQLRDLKGPLDNNPAFRKLLQEILSDPEALEKL 151 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHCCHHHHHHH
Confidence 4566777777777777775 45999999999999998876
No 9
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=53.83 E-value=97 Score=33.08 Aligned_cols=43 Identities=14% Similarity=0.334 Sum_probs=33.6
Q ss_pred cChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCHHHHhhc
Q 015836 214 ISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEM 256 (399)
Q Consensus 214 Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddDeDMa~M 256 (399)
+.+.+-.+||.+.+++-.--..-++||-...++.|+-.++-+|
T Consensus 383 ~~k~~~~rlR~hQRkfL~AI~~fR~Vk~~qRkl~e~~nsl~d~ 425 (489)
T KOG3684|consen 383 VSKGDQARLRKHQRKFLQAIHQFRSVKWEQRKLSEQANSLVDL 425 (489)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 3556778899998886666666889998888988888777666
No 10
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=52.44 E-value=1.6e+02 Score=25.73 Aligned_cols=38 Identities=37% Similarity=0.575 Sum_probs=28.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHH-------HHHHHhhCCHHHHhhcc
Q 015836 220 ERVRRLKSRLVALTRRVQKVR-------DEIEQLMDDDGDMAEMY 257 (399)
Q Consensus 220 erLr~lK~rL~~l~~rvq~VR-------d~LeelLddDeDMa~My 257 (399)
.++..|+..+..++.|.+..- +.+++|=.|=.||.+||
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 456667777777777766644 56788888889999998
No 11
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=51.75 E-value=2.4e+02 Score=33.62 Aligned_cols=142 Identities=18% Similarity=0.288 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------ccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 015836 177 EFRALEVALEAACTFLDSQAAELEIEAYPLLDELTS---------KISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLM 247 (399)
Q Consensus 177 EfrALEa~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~---------~Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelL 247 (399)
...++++-+......+..++...+..+..-+++|.. +|++ .++..+++++..++..++.+.+.=.++.
T Consensus 722 ~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~---~~I~~l~~~i~~L~~~l~~ie~~r~~V~ 798 (1201)
T PF12128_consen 722 QWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDP---ERIQQLKQEIEQLEKELKRIEERRAEVI 798 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 346677777777777777777666666665554432 3443 3578899999999999999999999999
Q ss_pred CCHHHHhhcccccccccccccccCccccccccCCCccccCCCCCCCCCCCchhhhhhhhhhhhhccccccCCCCCCCChH
Q 015836 248 DDDGDMAEMYLTEKKSRMEASFYGDQSVLGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVE 327 (399)
Q Consensus 248 ddDeDMa~MyLT~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e 327 (399)
+-+.+|...|........ ..+.+.+..+....+ ...--+
T Consensus 799 eY~~~~~~~~~~~~~~~~--------------------------------~~~~l~~~~~~~~~~---------~~~l~~ 837 (1201)
T PF12128_consen 799 EYEDWLQEEWDKVDELRE--------------------------------EKPELEEQLRDLEQE---------LQELEQ 837 (1201)
T ss_pred HHHHHHHHHHHhhhhhhh--------------------------------hhhHHHHHHHHHHHH---------HHHHHH
Confidence 999999999976322110 000111111111100 011235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhH
Q 015836 328 ELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFIN 362 (399)
Q Consensus 328 ElEmLLEaYf~qiD~~~~~l~~L~e~IddTEd~In 362 (399)
+++.+...|-.....+-.++..+.+.+...+++++
T Consensus 838 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~ 872 (1201)
T PF12128_consen 838 ELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLR 872 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777888888888888888888888777
No 12
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=49.20 E-value=2.1e+02 Score=26.00 Aligned_cols=29 Identities=24% Similarity=0.145 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015836 184 ALEAACTFLDSQAAELEIEAYPLLDELTS 212 (399)
Q Consensus 184 ~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~ 212 (399)
+--.+...||.+...+-..+..++..|..
T Consensus 49 id~~~L~~LE~~a~~ia~svd~ll~~L~~ 77 (149)
T PF10157_consen 49 IDPAVLHDLERDAQAIAESVDSLLRSLRS 77 (149)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446667777777777776666666543
No 13
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=48.18 E-value=25 Score=32.27 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=31.3
Q ss_pred hHHHHHHHhhhHHHHHHHH---HHHHHHHHHhhCCHHHHhhc
Q 015836 218 NLERVRRLKSRLVALTRRV---QKVRDEIEQLMDDDGDMAEM 256 (399)
Q Consensus 218 ~LerLr~lK~rL~~l~~rv---q~VRd~LeelLddDeDMa~M 256 (399)
.|.+|..++++|..|.+.. ..+|+.|+++|.|.+.++.+
T Consensus 111 ~L~~LlelR~~L~~L~~~l~~~~~~~~~l~~~l~d~~~~~~L 152 (159)
T TIGR03358 111 ELKKLLEAREALRDLKGPLDNNPDLRKLLQELLKDKDLLEKL 152 (159)
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHCCHHHHHHH
Confidence 4566777777888887775 45999999999999988776
No 14
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=46.01 E-value=1.3e+02 Score=26.47 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015836 185 LEAACTFLDSQAAELEIEAYPLLDELTSKIS 215 (399)
Q Consensus 185 L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is 215 (399)
|..+|+.+..++..+-.....+=++|+.+|.
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsqRId 71 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQRID 71 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666555555555555555556665554
No 15
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=45.24 E-value=2.1e+02 Score=25.90 Aligned_cols=38 Identities=16% Similarity=0.480 Sum_probs=23.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCHHHHhhc
Q 015836 219 LERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEM 256 (399)
Q Consensus 219 LerLr~lK~rL~~l~~rvq~VRd~LeelLddDeDMa~M 256 (399)
+..|-.+...-..++.+...++++=++||++-..+..+
T Consensus 27 ~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ 64 (157)
T PF04136_consen 27 LDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEEL 64 (157)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666677777777777777665555444
No 16
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.15 E-value=1.6e+02 Score=26.48 Aligned_cols=63 Identities=29% Similarity=0.423 Sum_probs=44.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhccChhhH-HHHHHHhhhHHHHHHHHHHHHH
Q 015836 175 PFEFRALEVALEAACTFLDSQAAELEIEAYPL---LDELTSKISTLNL-ERVRRLKSRLVALTRRVQKVRD 241 (399)
Q Consensus 175 PFEfrALEa~L~~v~s~Le~e~~~Le~~~~~~---Ld~L~~~Is~~~L-erLr~lK~rL~~l~~rvq~VRd 241 (399)
|=|+..|+.= +..|..++..++.....+ |..|.+..++..| +.+-.++..+..++.|++.++.
T Consensus 71 ~eel~~ld~e----i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAE----IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666654 667777777777776665 4455566676665 4466888888899999888886
No 17
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=44.15 E-value=35 Score=25.93 Aligned_cols=31 Identities=13% Similarity=0.449 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCHHHHhhcc
Q 015836 227 SRLVALTRRVQKVRDEIEQLMDDDGDMAEMY 257 (399)
Q Consensus 227 ~rL~~l~~rvq~VRd~LeelLddDeDMa~My 257 (399)
..+..+....+.+++.++++=++=.|+-+||
T Consensus 14 ~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 14 SSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555554444445555555
No 18
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=44.03 E-value=3.5e+02 Score=27.20 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhHHHhhHHhcccCcccccchhccccccceeeeee
Q 015836 343 TLNKLTSLKEYIDDTEDFINIQLVCFFSIDNKLCFFSPVLALKFEFR 389 (399)
Q Consensus 343 ~~~~l~~L~e~IddTEd~InI~LD~~~~~RN~Li~~el~Lsl~~~~~ 389 (399)
+...+..|+..++..|.+-.+.+-. ..+..|.|...=.|.+.|-
T Consensus 274 t~~Ev~~Lk~~~~~Le~~~gw~~~~---~~~~~l~~~~~~~i~~~fd 317 (325)
T PF08317_consen 274 TRSEVKRLKAKVDALEKLTGWKIVS---ISGSTLEFRYKDEIELSFD 317 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHCcEEEE---EeCCeEEEEEcCEEEEEEe
Confidence 3445666677777777777666666 5566665555444444444
No 19
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=41.42 E-value=1.7e+02 Score=27.52 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 015836 183 VALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQL 246 (399)
Q Consensus 183 a~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rvq~VRd~Leel 246 (399)
+-+..-+-.||.++..+|.......+.|. ..+|.-+.+|..++.+++++..+-+-++.+
T Consensus 75 arvA~lvinlE~kvD~lee~fdd~~d~l~-----~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~ 133 (189)
T TIGR02132 75 ANVASLVINLEEKVDLIEEFFDDKFDELE-----AQQEQAPALKKDVTKLKQDIKSLDKKLDKI 133 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhCchHHhHHHHHHHHHHHHHHHHHHH
Confidence 33455566778888877776666555554 223333444555555555554444444333
No 20
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.78 E-value=4.7e+02 Score=30.64 Aligned_cols=95 Identities=23% Similarity=0.348 Sum_probs=52.5
Q ss_pred CCCCCCchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh-hhHHHHH-HHhhhHHHHHHHHHHHHHHH
Q 015836 169 TSPDYLPFEFRALEVA---LEAACTFLDSQAAELEIEAYPLLDELTSKIST-LNLERVR-RLKSRLVALTRRVQKVRDEI 243 (399)
Q Consensus 169 ~~~~~LPFEfrALEa~---L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is~-~~LerLr-~lK~rL~~l~~rvq~VRd~L 243 (399)
..+..-.|||+=||-- |-.+.-.|..-...-......+-++++.+-+. ..|++.+ .|++++...+..+-.+++-+
T Consensus 361 ~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 361 DGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678999998853 22222222111111111122233455544332 2344544 45778888999999999999
Q ss_pred HHhhCCHHHHhhcccccccccc
Q 015836 244 EQLMDDDGDMAEMYLTEKKSRM 265 (399)
Q Consensus 244 eelLddDeDMa~MyLT~k~~~~ 265 (399)
+--|--+ .|-.+ ||+|...+
T Consensus 441 DAAlGAE-~MV~q-Ltdknlnl 460 (1243)
T KOG0971|consen 441 DAALGAE-EMVEQ-LTDKNLNL 460 (1243)
T ss_pred HHhhcHH-HHHHH-HHhhccCH
Confidence 8888854 45554 57776554
No 21
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=35.92 E-value=2.3e+02 Score=22.71 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhccCh--hhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 015836 179 RALEVALEAACTFL-------DSQAAELEIEAYPLLDELTSKIST--LNLERVRRLKSRLVALTRRVQKVRDEIE 244 (399)
Q Consensus 179 rALEa~L~~v~s~L-------e~e~~~Le~~~~~~Ld~L~~~Is~--~~LerLr~lK~rL~~l~~rvq~VRd~Le 244 (399)
-+|=+.|.-+...+ +.-+..++..+.++..+.+.-+.. .-++.+..-..++..+-+.|+.+-+.+.
T Consensus 11 ~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~ 85 (90)
T PF06103_consen 11 AVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVS 85 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444444444444 333444444445554444332211 1233333334444444444444444433
No 22
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=33.15 E-value=70 Score=23.28 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHh
Q 015836 339 VIDSTLNKLTSLKEYIDDTEDFINIQ 364 (399)
Q Consensus 339 qiD~~~~~l~~L~e~IddTEd~InI~ 364 (399)
|.-.+..++..|..++.||++.+++.
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~~ 28 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEMT 28 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55677889999999999999999875
No 23
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.86 E-value=48 Score=30.59 Aligned_cols=39 Identities=10% Similarity=0.328 Sum_probs=29.6
Q ss_pred hHHHHHHHhhhHHHHHHHH---HHHHHHHHHhhCCHHHHhhc
Q 015836 218 NLERVRRLKSRLVALTRRV---QKVRDEIEQLMDDDGDMAEM 256 (399)
Q Consensus 218 ~LerLr~lK~rL~~l~~rv---q~VRd~LeelLddDeDMa~M 256 (399)
.|.+|+.++++|..|.+.. -.+++.|+++|.|++.+..+
T Consensus 116 ~L~kLLeaR~~L~~L~~~ldg~~~~e~~l~~lL~n~~~l~~L 157 (169)
T COG3516 116 ELKKLLEARTALADLKGPLDGNPAFEELLQDLLKNEELLQKL 157 (169)
T ss_pred HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHcCHHHHHHH
Confidence 4556666677777776654 35899999999999998776
No 24
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=30.50 E-value=92 Score=25.01 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=0.0
Q ss_pred hccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCHH
Q 015836 212 SKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDG 251 (399)
Q Consensus 212 ~~Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddDe 251 (399)
...+...-++|-.|-.+..++++||+ +||.+||+|+
T Consensus 34 ~~ls~~d~~~L~~L~~~a~rm~eRI~----tLE~ILd~e~ 69 (75)
T TIGR02976 34 ASLSTDDQALLQELYAKADRLEERID----TLERILDAEH 69 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCC
No 25
>PRK09458 pspB phage shock protein B; Provisional
Probab=30.27 E-value=87 Score=25.27 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhHHhccc
Q 015836 337 FVVIDSTLNKLTSLKEYIDDTEDFINIQLVC 367 (399)
Q Consensus 337 f~qiD~~~~~l~~L~e~IddTEd~InI~LD~ 367 (399)
+++++++.++++.|.+.|+..|+++.-+--+
T Consensus 41 ~~~L~~L~~~A~rm~~RI~tLE~ILDae~P~ 71 (75)
T PRK09458 41 QQRLAQLTEKAERMRERIQALEAILDAEHPN 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 4566778889999999999999987544333
No 26
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=28.74 E-value=92 Score=26.00 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhH-HHHHHHhhhHHHHHHH
Q 015836 177 EFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNL-ERVRRLKSRLVALTRR 235 (399)
Q Consensus 177 EfrALEa~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is~~~L-erLr~lK~rL~~l~~r 235 (399)
|+..|++++.....+=..-......-...+-+.|...++...| +.+|.||++-.....+
T Consensus 12 Ei~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 12 EIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 7888998887644221000001111112223344455666555 7788888875444433
No 27
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=28.65 E-value=4.2e+02 Score=23.49 Aligned_cols=66 Identities=21% Similarity=0.306 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHH----hhhHHHHHHHHHHHHHHHHHh
Q 015836 181 LEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRL----KSRLVALTRRVQKVRDEIEQL 246 (399)
Q Consensus 181 LEa~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is~~~LerLr~l----K~rL~~l~~rvq~VRd~Leel 246 (399)
+|-....+....+..+..+...+....+.|+..+...-=.-|.+| ++-+.+|..||..+...|++|
T Consensus 59 ~~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 59 AEEQVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555556666554433221222222 445556666665555555544
No 28
>PRK10132 hypothetical protein; Provisional
Probab=28.05 E-value=1.2e+02 Score=25.93 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCHHHH
Q 015836 228 RLVALTRRVQKVRDEIEQLMDDDGDM 253 (399)
Q Consensus 228 rL~~l~~rvq~VRd~LeelLddDeDM 253 (399)
..+.++.+...+++.|..|+++=|++
T Consensus 6 ~~~~~~~q~e~L~~Dl~~L~~~le~l 31 (108)
T PRK10132 6 NRNDVDDGVQDIQNDVNQLADSLESV 31 (108)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 34567777777888888888776665
No 29
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.83 E-value=4.4e+02 Score=24.20 Aligned_cols=74 Identities=20% Similarity=0.161 Sum_probs=44.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHHHH-HHHHHHHhh
Q 015836 172 DYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQK-VRDEIEQLM 247 (399)
Q Consensus 172 ~~LPFEfrALEa~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rvq~-VRd~LeelL 247 (399)
...|+--++||++-+-+- .++.-...........+.+|...-....+ .+..+|+-|+.+..-+.. +||.|-+++
T Consensus 76 kpyPWt~~~L~aa~el~e-e~eeLs~deke~~~~sl~dL~~d~PkT~v-A~~rfKk~~~K~g~~v~~~~~dIlVdv~ 150 (158)
T PF10083_consen 76 KPYPWTENALEAANELIE-EDEELSPDEKEQFKESLPDLTKDTPKTKV-AATRFKKILSKAGSIVGDAIRDILVDVA 150 (158)
T ss_pred CCCchHHHHHHHHHHHHH-HhhcCCHHHHHHHHhhhHHHhhcCCccHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 468999999999977554 22222222333455667777755333344 355678777777665543 666666654
No 30
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=26.64 E-value=3.8e+02 Score=25.43 Aligned_cols=12 Identities=50% Similarity=0.720 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhC
Q 015836 237 QKVRDEIEQLMD 248 (399)
Q Consensus 237 q~VRd~LeelLd 248 (399)
..||.+++.||+
T Consensus 131 ~lvk~e~EqLL~ 142 (195)
T PF12761_consen 131 ALVKREFEQLLD 142 (195)
T ss_pred HHHHHHHHHHHH
Confidence 447777888877
No 31
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=26.32 E-value=2.4e+02 Score=33.20 Aligned_cols=77 Identities=27% Similarity=0.428 Sum_probs=54.3
Q ss_pred CCCCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCC
Q 015836 171 PDYLPFEFRAL-EVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDD 249 (399)
Q Consensus 171 ~~~LPFEfrAL-Ea~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLdd 249 (399)
...-||-.++= +-.|...|..+++..+.|+.. |+. +.+.|+++++.|..++.+..+.|.+++++|+
T Consensus 160 ~~~sp~~~~~~~~~hL~velAdle~kir~LrqE-------lEE-----K~enll~lr~eLddleae~~klrqe~~e~l~- 226 (1195)
T KOG4643|consen 160 LYKSPYDIVVKKNLHLEVELADLEKKIRTLRQE-------LEE-----KFENLLRLRNELDDLEAEISKLRQEIEEFLD- 226 (1195)
T ss_pred CCCCcchhhcchhHHHHHHHHHHHHHHHHHHHH-------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34455544442 345666677777776666554 432 3477899999999999999999999999998
Q ss_pred HHHHhhccccc
Q 015836 250 DGDMAEMYLTE 260 (399)
Q Consensus 250 DeDMa~MyLT~ 260 (399)
+.-=++||--+
T Consensus 227 ea~ra~~yrde 237 (1195)
T KOG4643|consen 227 EAHRADRYRDE 237 (1195)
T ss_pred HHHhhhhhhhH
Confidence 45556777444
No 32
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=26.19 E-value=1.5e+02 Score=26.78 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHhcc
Q 015836 324 DSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLV 366 (399)
Q Consensus 324 ~d~eElEmLLEaYf~qiD~~~~~l~~L~e~IddTEd~InI~LD 366 (399)
.+-+.+|-+|..++.+++++.+.++.+.+.++..++-..-.+.
T Consensus 39 ~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (151)
T PF14584_consen 39 KDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQ 81 (151)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3556789999999999999999999999999999987765543
No 33
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=26.06 E-value=4.3e+02 Score=26.26 Aligned_cols=81 Identities=25% Similarity=0.357 Sum_probs=50.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCC
Q 015836 173 YLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLD---ELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDD 249 (399)
Q Consensus 173 ~LPFEfrALEa~L~~v~s~Le~e~~~Le~~~~~~Ld---~L~~~Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLdd 249 (399)
.-|+|.--+|-++..++..+..++..++..+..+-. .|+.+|..... .|-+.++||..+.+-==.+-|+.+.+
T Consensus 155 ~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~-ELER~qKRL~sLq~vRPAfmdEyEkl--- 230 (267)
T PF10234_consen 155 ARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQ-ELERNQKRLQSLQSVRPAFMDEYEKL--- 230 (267)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcChHHHHHHHHH---
Confidence 479999999999999999999998888877766533 35556543321 23344555554432111122344333
Q ss_pred HHHHhhcc
Q 015836 250 DGDMAEMY 257 (399)
Q Consensus 250 DeDMa~My 257 (399)
+++|..+|
T Consensus 231 E~EL~~lY 238 (267)
T PF10234_consen 231 EEELQKLY 238 (267)
T ss_pred HHHHHHHH
Confidence 56777776
No 34
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=25.90 E-value=4.5e+02 Score=22.95 Aligned_cols=9 Identities=44% Similarity=0.608 Sum_probs=4.3
Q ss_pred HHHHHHhhc
Q 015836 132 VVELQRRLT 140 (399)
Q Consensus 132 l~~L~~rL~ 140 (399)
+.+++.+|.
T Consensus 14 ~~~l~~~l~ 22 (202)
T PF01442_consen 14 TEELEERLE 22 (202)
T ss_dssp HHHHHHCHC
T ss_pred HHHHHHHHH
Confidence 444555443
No 35
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=25.90 E-value=2.9e+02 Score=22.27 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=14.7
Q ss_pred CCChHHHHHHHHHHHHHH
Q 015836 323 TDSVEELEMLLEAYFVVI 340 (399)
Q Consensus 323 ~~d~eElEmLLEaYf~qi 340 (399)
..+.+|-|++|+.|...+
T Consensus 55 ~~~r~E~eail~~Y~~AL 72 (74)
T PF10073_consen 55 PDEREEEEAILDLYMSAL 72 (74)
T ss_pred HhHHHHHHHHHHHHHHHh
Confidence 457789999999998654
No 36
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=25.89 E-value=40 Score=25.58 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=20.0
Q ss_pred cccCCCcceEEEECCCCCeEEEEeehhhhhhhcCCC
Q 015836 43 KKRGQGLRSWIRVDVSGNSQIIEVDKFSMMRRCDLP 78 (399)
Q Consensus 43 ~~~~~~~r~w~~~D~~G~~~~~e~~K~~l~~~~gL~ 78 (399)
+|.|.|+|+|-+. -.++.|+++|||.
T Consensus 12 ~kfg~GsrsC~vC----------sn~~gLIrKYGL~ 37 (56)
T KOG3506|consen 12 RKFGQGSRSCRVC----------SNRHGLIRKYGLN 37 (56)
T ss_pred cccCCCCcceeee----------ccchhHHHHhhhH
Confidence 4779999999876 2566788888874
No 37
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=25.40 E-value=1.4e+02 Score=24.08 Aligned_cols=34 Identities=18% Similarity=0.428 Sum_probs=25.5
Q ss_pred ccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCH
Q 015836 213 KISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDD 250 (399)
Q Consensus 213 ~Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddD 250 (399)
.++....++|-.|-.+..+++.||+ +||.+||.|
T Consensus 35 gLs~~d~~~L~~L~~~a~rm~eRI~----tLE~ILdae 68 (75)
T PF06667_consen 35 GLSEEDEQRLQELYEQAERMEERIE----TLERILDAE 68 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCC
Confidence 4566667777788888888888885 678888765
No 38
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=24.90 E-value=1e+03 Score=26.85 Aligned_cols=33 Identities=33% Similarity=0.404 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015836 176 FEFRALEVALEAACTFLDSQAAELEIEAYPLLDE 209 (399)
Q Consensus 176 FEfrALEa~L~~v~s~Le~e~~~Le~~~~~~Ld~ 209 (399)
|+-|| |.+|..+|..|+.....|+..-..+..+
T Consensus 225 F~~ra-~~~fp~a~e~L~~r~~~L~~k~~~L~~e 257 (683)
T PF08580_consen 225 FQSRA-ESIFPSACEELEDRYERLEKKWKKLEKE 257 (683)
T ss_pred HHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888 8999999999998888887766555433
No 39
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=24.08 E-value=2.3e+02 Score=21.37 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhH
Q 015836 340 IDSTLNKLTSLKEYIDDTEDFIN 362 (399)
Q Consensus 340 iD~~~~~l~~L~e~IddTEd~In 362 (399)
-+.|+.|+..+...||+.|.-|.
T Consensus 23 S~~I~~riDeM~~RIDdLE~si~ 45 (54)
T PF06825_consen 23 SDQILGRIDEMSSRIDDLEKSIA 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHH-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 46789999999999999998764
No 40
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=23.41 E-value=4.6e+02 Score=26.80 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=23.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhC
Q 015836 220 ERVRRLKSRLVALTRRVQKVRDEIEQLMD 248 (399)
Q Consensus 220 erLr~lK~rL~~l~~rvq~VRd~LeelLd 248 (399)
..|..+-++|.+|+.+++.++.+|.++-.
T Consensus 289 sElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 289 SELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34667778999999999999999988654
No 41
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.32 E-value=1.3e+02 Score=24.12 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhHHhccc
Q 015836 337 FVVIDSTLNKLTSLKEYIDDTEDFINIQLVC 367 (399)
Q Consensus 337 f~qiD~~~~~l~~L~e~IddTEd~InI~LD~ 367 (399)
.++++++.++++.|.+.|+..|.++.-.=.+
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ILdae~P~ 71 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLERILDAEHPN 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3456677888899999999999887544444
No 42
>PF08970 Sda: Sporulation inhibitor A; InterPro: IPR015064 Members of this protein group contain two antiparallel alpha helices that are linked by a highly structured inter-helix loop to form a helical hairpin; the structure is stabilised by numerous hydrophobic and electrostatic interactions. These sporulation inhibitors are antikinases that bind to the histidine kinase KinA phosphotransfer domain and act as a molecular barricade that inhibit productive interaction between the ATP binding site and the phosphorylatable KinA His residue. This results in the inhibition of sporulation (by preventing phosphorylation of spo0A) []. ; PDB: 3FYR_B 1PV0_A.
Probab=23.24 E-value=69 Score=23.45 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 015836 330 EMLLEAYFVVIDS 342 (399)
Q Consensus 330 EmLLEaYf~qiD~ 342 (399)
|+|+|+|++.++-
T Consensus 7 e~LiesY~~A~el 19 (46)
T PF08970_consen 7 ELLIESYHKAIEL 19 (46)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8999999997753
No 43
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=21.18 E-value=3.3e+02 Score=27.43 Aligned_cols=55 Identities=22% Similarity=0.419 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCHHHHhhccccccc
Q 015836 199 LEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKK 262 (399)
Q Consensus 199 Le~~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddDeDMa~MyLT~k~ 262 (399)
|+.++..+...+. .|+-..+.+|..+.+|+..++.-|+.|=....-+ .+|-+.|.
T Consensus 30 L~~v~~diF~rI~--------~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kAi-~vfs~aky 84 (297)
T PF11945_consen 30 LDKVSNDIFSRIS--------ARVERNRERLQAIQQRIEVAQAKIEKLQGSKKAI-TVFSPAKY 84 (297)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccE-EEeCcccC
Confidence 4555555555544 3456677788888888888888888876654433 34444443
No 44
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=20.43 E-value=6.9e+02 Score=27.69 Aligned_cols=36 Identities=11% Similarity=0.321 Sum_probs=21.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhC-CHHHHhhc
Q 015836 220 ERVRRLKSRLVALTRRVQKVRDEIEQLMD-DDGDMAEM 256 (399)
Q Consensus 220 erLr~lK~rL~~l~~rvq~VRd~LeelLd-dDeDMa~M 256 (399)
+.+...+....+++..+. +++-+-++|. .|..|+.|
T Consensus 363 ~e~~~~~~~~~~le~~~~-l~~k~~~lL~d~e~ni~kL 399 (594)
T PF05667_consen 363 EELEEKEAENEELEEELK-LKKKTVELLPDAEENIAKL 399 (594)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHH
Confidence 344556666667777666 4444444454 46788554
Done!