Query 015836
Match_columns 399
No_of_seqs 146 out of 357
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 03:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkg_A Magnesium transporter M 100.0 1.2E-71 4.1E-76 536.1 30.1 239 49-375 16-261 (261)
2 4ev6_A Magnesium transport pro 96.5 0.061 2.1E-06 52.7 15.6 207 68-378 63-281 (339)
3 2iub_A CORA, divalent cation t 96.2 0.083 2.8E-06 52.2 14.9 124 180-377 181-304 (363)
4 4egw_A Magnesium transport pro 96.1 0.54 1.8E-05 44.4 19.6 206 68-377 63-280 (280)
5 3nvo_A Zinc transport protein 94.9 2.3 7.8E-05 39.4 20.9 163 49-250 41-217 (264)
6 3ck6_A Putative membrane trans 93.3 1.2 4.2E-05 41.0 13.1 206 51-376 32-252 (252)
7 3swf_A CGMP-gated cation chann 85.7 3 0.0001 32.3 7.2 50 185-242 5-54 (74)
8 3swy_A Cyclic nucleotide-gated 73.3 8.9 0.0003 27.0 5.7 44 185-236 3-46 (46)
9 2bbh_A Divalent cation transpo 66.7 16 0.00056 33.5 7.9 71 180-250 172-242 (269)
10 2hn1_A CORA, magnesium and cob 61.4 17 0.0006 33.4 7.0 70 180-250 173-242 (266)
11 3p8c_D Wiskott-aldrich syndrom 54.8 30 0.001 33.2 7.4 58 180-238 25-82 (279)
12 1t3u_A Conserved hypothetical 41.4 30 0.001 27.6 4.5 66 182-253 25-101 (104)
13 3v86_A De novo design helix; c 40.7 48 0.0016 20.1 4.0 25 222-246 2-26 (27)
14 3zcc_A HAMP, osmolarity sensor 26.5 1.9E+02 0.0066 21.2 7.1 73 175-247 36-111 (114)
15 3hhm_B NISH2 P85alpha; PI3KCA, 25.8 3.2E+02 0.011 26.9 9.8 66 178-244 160-229 (373)
16 3oja_B Anopheles plasmodium-re 24.6 3.7E+02 0.013 27.1 10.5 43 325-367 545-587 (597)
17 3fyr_A Sporulation inhibitor S 24.4 40 0.0014 23.9 2.1 12 330-341 9-20 (48)
18 4fla_A Regulation of nuclear P 21.3 3.9E+02 0.013 22.9 9.0 75 179-253 71-150 (152)
19 3mq9_A Bone marrow stromal ant 21.2 2.7E+02 0.0091 27.4 8.4 24 221-244 444-467 (471)
20 3r2p_A Apolipoprotein A-I; amp 20.7 4.1E+02 0.014 23.0 9.5 32 181-212 98-129 (185)
No 1
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-71 Score=536.11 Aligned_cols=239 Identities=27% Similarity=0.408 Sum_probs=220.7
Q ss_pred cceEEEECCCCCeEEEE--eehhhhhhhcCCCCCcccCcCCCC-CCCceeeecCCeeEeecccceeeeecCeeEeecCCC
Q 015836 49 LRSWIRVDVSGNSQIIE--VDKFSMMRRCDLPARDLRLLDPLF-VYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLD 125 (399)
Q Consensus 49 ~r~w~~~D~~G~~~~~e--~~K~~l~~~~gL~~RDLR~LDp~~-~~PssIl~R~~aIlvnLe~IrAIIt~d~VLLfd~~~ 125 (399)
.-+|++||++|+++.++ ++|++||+++||+|||||+|||++ +++|+|++|++||||||+|||||||+|+|||||+.+
T Consensus 16 ~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~~ 95 (261)
T 3rkg_A 16 FISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTTN 95 (261)
T ss_dssp EEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCSC
T ss_pred eEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCCC
Confidence 56899999999999876 999999999999999999999985 344479999999999999999999999999999998
Q ss_pred hhHH----HHHHHHHHhhcccCCCCcccccCCccccccCCcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015836 126 SYVL----QYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEI 201 (399)
Q Consensus 126 ~~v~----~fl~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFEfrALEa~L~~v~s~Le~e~~~Le~ 201 (399)
+.+. .|+++|+.||...+ ...+|||||||||||++||+.|++++..+++
T Consensus 96 ~~~~~~~~~f~~~l~~~l~~~~---------------------------~~~lPFEfraLEa~L~~v~~~Le~e~~~l~~ 148 (261)
T 3rkg_A 96 PSAAAKLSVLMYDLESKLSSTK---------------------------NNSQFYEHRALESIFINVMSALETDFKLHSQ 148 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSS---------------------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHhccCC---------------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765 69999999997542 1359999999999999999999999999999
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCHHHHhhcccccccccccccccCccccccccCC
Q 015836 202 EAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYRSN 281 (399)
Q Consensus 202 ~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddDeDMa~MyLT~k~~~~~~~~~~~~~~~~~~~~ 281 (399)
.++++|++|+++|++.+|++|+..|++|++|++||++||++|+++||||+||++||||+|+..
T Consensus 149 ~~~~~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~~----------------- 211 (261)
T 3rkg_A 149 ICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKSP----------------- 211 (261)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCCT-----------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCCC-----------------
Confidence 999999999999999999999999999999999999999999999999999999999998521
Q ss_pred CccccCCCCCCCCCCCchhhhhhhhhhhhhccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 015836 282 DIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFI 361 (399)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~eElEmLLEaYf~qiD~~~~~l~~L~e~IddTEd~I 361 (399)
.++|+|+|||||+||+|+|+++|++++|++||+||||+|
T Consensus 212 -----------------------------------------~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i 250 (261)
T 3rkg_A 212 -----------------------------------------KDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIV 250 (261)
T ss_dssp -----------------------------------------TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999999
Q ss_pred HHhcccCcccccch
Q 015836 362 NIQLVCFFSIDNKL 375 (399)
Q Consensus 362 nI~LD~~~~~RN~L 375 (399)
||+||+ +||+|
T Consensus 251 ~i~LD~---~RN~L 261 (261)
T 3rkg_A 251 NIILDA---NRNSL 261 (261)
T ss_dssp HHHHHH---TC---
T ss_pred HHHHhh---hccCC
Confidence 999999 99986
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=96.51 E-value=0.061 Score=52.66 Aligned_cols=207 Identities=14% Similarity=0.080 Sum_probs=129.6
Q ss_pred hhhhhhhcCCCCCccc-CcCCCCCCCceeeecCCeeE-----------eecccceeeeecCeeEeecCCChhHHHHHHHH
Q 015836 68 KFSMMRRCDLPARDLR-LLDPLFVYPSTILGREKAIV-----------VNLEQIRCIITADEVLLLNSLDSYVLQYVVEL 135 (399)
Q Consensus 68 K~~l~~~~gL~~RDLR-~LDp~~~~PssIl~R~~aIl-----------vnLe~IrAIIt~d~VLLfd~~~~~v~~fl~~L 135 (399)
...|.+.+||++=.+. .+|+.- .| .+-.-++.++ +...+|..+++.+.++-|...+. +.+..+
T Consensus 63 ~~~l~~~~~l~~~~~ed~l~~~~-rp-k~e~~~~~~~iv~~~~~~~~~~~~~~v~i~l~~~~lITv~~~~~---~~~~~~ 137 (339)
T 4ev6_A 63 LYKLSKKIGISVSDLQIGLDEQE-IP-RVEEDEDFYLIIYKAPLFEEDITTTSLGIYIKNNLLLTIHSDKI---KAIGRL 137 (339)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC-CC-EEEEETTEEEEECCCCCCTTTCCCCCCEEEEETTEEEEEESSCC---HHHHHH
T ss_pred HHHHHHHHCcCHhHHHHhhCCcc-CC-eEEEECCEEEEEEecCccCCCcceEEEEEEEECCeeEEeecCCc---chhHHH
Confidence 3557888999876554 233321 11 2222222221 23457788888888887765433 234556
Q ss_pred HHhhcccCCCCcccccCCccccccCCcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015836 136 QRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKIS 215 (399)
Q Consensus 136 ~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFEfrALEa~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is 215 (399)
.+++....... ....-|- .+|-++|..++..+..-+..++..+..+=+.+-.+-+
T Consensus 138 ~~~~~~~~~~~-----------------------~~~~~~~--~ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~ 192 (339)
T 4ev6_A 138 HKLISTKKPRI-----------------------VFERGIG--FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYD 192 (339)
T ss_dssp HHHSSSSSSCC-----------------------CCCSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred HHHHHcCCCcc-----------------------ccccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 66665432110 0000121 3556677777777766666666664433333333445
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCHHHHhhcccccccccccccccCccccccccCCCccccCCCCCCCCC
Q 015836 216 TLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYRSNDIQSISAPVSPVSS 295 (399)
Q Consensus 216 ~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddDeDMa~MyLT~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (399)
...++++..+|+.|..+..-+...|+++..+...+. .
T Consensus 193 ~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~------------~------------------------------- 229 (339)
T 4ev6_A 193 REVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYL------------P------------------------------- 229 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCB------------T-------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhccc------------c-------------------------------
Confidence 667899999999999999998888888876643210 0
Q ss_pred CCchhhhhhhhhhhhhccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHhcccCcccccch
Q 015836 296 PPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLVCFFSIDNKL 375 (399)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~eElEmLLEaYf~qiD~~~~~l~~L~e~IddTEd~InI~LD~~~~~RN~L 375 (399)
...+|....|+.-+.++..+...++.+++.+.+..|...-.++. +.|+.
T Consensus 230 ----------------------------~~~~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~---~~N~~ 278 (339)
T 4ev6_A 230 ----------------------------ITTKEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENI---KMNQI 278 (339)
T ss_dssp ----------------------------TBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred ----------------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 01123344566667788888999999999999999999999999 99999
Q ss_pred hcc
Q 015836 376 CFF 378 (399)
Q Consensus 376 i~~ 378 (399)
|++
T Consensus 279 mk~ 281 (339)
T 4ev6_A 279 MKI 281 (339)
T ss_dssp HHH
T ss_pred HHH
Confidence 984
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=96.24 E-value=0.083 Score=52.24 Aligned_cols=124 Identities=14% Similarity=0.118 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCHHHHhhcccc
Q 015836 180 ALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLT 259 (399)
Q Consensus 180 ALEa~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddDeDMa~MyLT 259 (399)
+|-++|..++..+-.-+..++..+..+=+++-.+-+...++++..+|+.+..+..-+...|++++.+...+..
T Consensus 181 ll~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~------- 253 (363)
T 2iub_A 181 LLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPP------- 253 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------
Confidence 4556666666666666666666544443344333345668999999999999999999999999998764210
Q ss_pred cccccccccccCccccccccCCCccccCCCCCCCCCCCchhhhhhhhhhhhhccccccCCCCCCCChHHHHHHHHHHHHH
Q 015836 260 EKKSRMEASFYGDQSVLGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVV 339 (399)
Q Consensus 260 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~eElEmLLEaYf~q 339 (399)
. -.++....++--+.+
T Consensus 254 --~--------------------------------------------------------------~~~~~~~~lrDv~d~ 269 (363)
T 2iub_A 254 --L--------------------------------------------------------------IEKETVPYFRDVYDH 269 (363)
T ss_dssp --S--------------------------------------------------------------CHHHHHHHHHHHHHH
T ss_pred --c--------------------------------------------------------------CCHHHHHHHHHHHHH
Confidence 0 013334445555778
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhHHhcccCcccccchhc
Q 015836 340 IDSTLNKLTSLKEYIDDTEDFINIQLVCFFSIDNKLCF 377 (399)
Q Consensus 340 iD~~~~~l~~L~e~IddTEd~InI~LD~~~~~RN~Li~ 377 (399)
+..+.+.++.+++.+.+..|...-.+++ +.|+.|+
T Consensus 270 ~~~~~e~~~~~re~l~~l~d~~~s~is~---~~N~imk 304 (363)
T 2iub_A 270 TIQIADTVETFRDIVSGLLDVYLSSVSN---KTNEVMK 304 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 8899999999999999999999999999 9999998
No 4
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=96.14 E-value=0.54 Score=44.43 Aligned_cols=206 Identities=15% Similarity=0.083 Sum_probs=114.4
Q ss_pred hhhhhhhcCCCCCccc-CcCCCCCCCceeeecCCeeE-----------eecccceeeeecCeeEeecCCChhHHHHHHHH
Q 015836 68 KFSMMRRCDLPARDLR-LLDPLFVYPSTILGREKAIV-----------VNLEQIRCIITADEVLLLNSLDSYVLQYVVEL 135 (399)
Q Consensus 68 K~~l~~~~gL~~RDLR-~LDp~~~~PssIl~R~~aIl-----------vnLe~IrAIIt~d~VLLfd~~~~~v~~fl~~L 135 (399)
...|.+.+||+|=.+. .+++.- .| .+-.-++.++ +...+|..+++.+.|+=|...... .+..+
T Consensus 63 l~~l~~~f~lh~l~leD~l~~~~-rp-Kie~~~d~~fivl~~~~~~~~~~t~~v~i~l~~~~lITv~~~~~~---~~~~v 137 (280)
T 4egw_A 63 LYKLSKKIGISVSDLQIGLDEQE-IP-RVEEDEDFYLIIYKAPLFEEDITTTSLGIYIKNNLLLTIHSDKIK---AIGRL 137 (280)
T ss_dssp HHHHHHHHTCCHHHHHHHTCTTC-CC-EEECCSSSEEEEEEEEECSSSCEEEEEEEEEETTEEEEEESSCCH---HHHHH
T ss_pred HHHHHHHHCcCHHHHHHHhCccc-Cc-eEEEECCEEEEEEEeccccccceeeeEEEEEECCEEEEEecCCcc---hHHHH
Confidence 3557888999986655 233321 11 2222222211 234567888888888877654332 33455
Q ss_pred HHhhcccCCCCcccccCCccccccCCcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015836 136 QRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKIS 215 (399)
Q Consensus 136 ~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFEfrALEa~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is 215 (399)
.+++........ ...-|- -+|=++|..++..+-.-+..++..+..+=+.+..+.+
T Consensus 138 ~~~l~~~~~~~~-----------------------~~~g~~--~ll~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~ 192 (280)
T 4egw_A 138 HKLISTKKPRIV-----------------------FERGIG--FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYD 192 (280)
T ss_dssp HHHHHHSCCSSS-----------------------CTTTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHhcCcccc-----------------------cccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 566644321100 000111 2445556666666555555566665444444545556
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCHHHHhhcccccccccccccccCccccccccCCCccccCCCCCCCCC
Q 015836 216 TLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYRSNDIQSISAPVSPVSS 295 (399)
Q Consensus 216 ~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddDeDMa~MyLT~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (399)
...+.++..+|+.|..|..-+.-.|+++..+...+.. +
T Consensus 193 ~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~---------~--------------------------------- 230 (280)
T 4egw_A 193 REVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLP---------I--------------------------------- 230 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS---------S---------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcc---------c---------------------------------
Confidence 6789999999999999999999999999887542100 0
Q ss_pred CCchhhhhhhhhhhhhccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHhcccCcccccch
Q 015836 296 PPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLVCFFSIDNKL 375 (399)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~eElEmLLEaYf~qiD~~~~~l~~L~e~IddTEd~InI~LD~~~~~RN~L 375 (399)
-.++....|+--+-++..+...++.+++.+.+.-|.-.-..++ +.|++
T Consensus 231 -----------------------------~~~~~~~~l~Dv~dh~~~~~e~~~~~re~l~~l~d~~~s~is~---~~N~i 278 (280)
T 4egw_A 231 -----------------------------TTKEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENI---KMNQI 278 (280)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred -----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHh
Confidence 0122233344444456666777777777777777777777788 99998
Q ss_pred hc
Q 015836 376 CF 377 (399)
Q Consensus 376 i~ 377 (399)
|+
T Consensus 279 MK 280 (280)
T 4egw_A 279 MK 280 (280)
T ss_dssp --
T ss_pred hC
Confidence 85
No 5
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=94.95 E-value=2.3 Score=39.36 Aligned_cols=163 Identities=13% Similarity=0.055 Sum_probs=99.0
Q ss_pred cceEEEECCCCCeEEEEeehhhhhhhcCCCCCcccCcCCCCCCCceeeecCCeeE--------------eecccceeeee
Q 015836 49 LRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRLLDPLFVYPSTILGREKAIV--------------VNLEQIRCIIT 114 (399)
Q Consensus 49 ~r~w~~~D~~G~~~~~e~~K~~l~~~~gL~~RDLR~LDp~~~~PssIl~R~~aIl--------------vnLe~IrAIIt 114 (399)
...|+-++..-. -....|.+.+|||+=-+.-+--....| .+-.=++.++ +...+|..+|+
T Consensus 41 ~~~Wi~l~~p~~-----~e~~~l~~~~~l~~l~~ed~~~~~~rp-k~e~~~~~~fivl~~~~~~~~~~~~~~~~v~~~l~ 114 (264)
T 3nvo_A 41 HPCWLHLNYTHP-----DSARWLASTPLLPNNVRDALAGESSRP-RVSRMGEGTLITLRCINGSTDERPDQLVAMRLYMD 114 (264)
T ss_dssp SCEEEEEETTSH-----HHHHHHHHCTTSCTTTHHHHTTCCCSC-EEEEETTEEEEEEECC----------CCEEEEEEC
T ss_pred CCEEEEeCCCCH-----HHHHHHHhccCCCHHHHHHHhCCCCCC-ceEEECCEEEEEEEecccCCCCCCcceEEEEEEEe
Confidence 356877754221 134567788999887665332221122 3333333322 34567888888
Q ss_pred cCeeEeecCCChhHHHHHHHHHHhhcccCCCCcccccCCccccccCCcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 015836 115 ADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDS 194 (399)
Q Consensus 115 ~d~VLLfd~~~~~v~~fl~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFEfrALEa~L~~v~s~Le~ 194 (399)
.+.|+-|..... ..+..+.+|+...... .-| ...|-++|..++..+-.
T Consensus 115 ~~~lITv~~~~~---~~~~~v~~rl~~~~~~---------------------------~~~--~~ll~~lld~ivd~y~~ 162 (264)
T 3nvo_A 115 ERFIVSTRQRKV---LALDDVVSDLQEGTGP---------------------------VDC--GGWLVDVCDALTDHASE 162 (264)
T ss_dssp SSEEEEEESSCC---HHHHHHHHHHHTTCSC---------------------------SSH--HHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCCc---CcHHHHHHHHHhCCCC---------------------------CCH--HHHHHHHHHHHHHHHHH
Confidence 888888775432 3455566666432100 012 24677778877777777
Q ss_pred HHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCH
Q 015836 195 QAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDD 250 (399)
Q Consensus 195 e~~~Le~~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddD 250 (399)
-+..++..+..+=+.+..+ +...+.++..+|+.|..|..-+.-.|+++..+...+
T Consensus 163 ~l~~l~~~id~lE~~l~~~-~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 217 (264)
T 3nvo_A 163 FIEELHDKIIDLEDNLLDQ-QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASER 217 (264)
T ss_dssp HHHHHHHHHHHHTTC-----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 7666666644432333223 445688999999999999999999999999987753
No 6
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=93.28 E-value=1.2 Score=41.03 Aligned_cols=206 Identities=12% Similarity=0.101 Sum_probs=117.7
Q ss_pred eEEEECCCCCeEEEEeehhhhhhhcCCCCCcccCcCCCCCCCceeeecCC-eeEe--e------------cccceeeeec
Q 015836 51 SWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRLLDPLFVYPSTILGREK-AIVV--N------------LEQIRCIITA 115 (399)
Q Consensus 51 ~w~~~D~~G~~~~~e~~K~~l~~~~gL~~RDLR~LDp~~~~PssIl~R~~-aIlv--n------------Le~IrAIIt~ 115 (399)
.|+-++..... ....|.+. |||+=-+.-+--....| .+-.=++ .+++ + ...|..+++.
T Consensus 32 ~Wi~l~~p~~~-----e~~~l~~~-~l~~l~~ed~l~~~~rp-k~e~~~d~~lfivl~~~~~~~~~~~~~~~~l~i~l~~ 104 (252)
T 3ck6_A 32 HWYHCERLHPD-----IRGWLEDN-HVPRATVDHLLADESRP-SFHPLDDDNFMLILRGINMNENASPEDMLSIRILYFQ 104 (252)
T ss_dssp EEEEEETTCTT-----HHHHHHHT-TCCHHHHHHHHCSSCCC-EEEECSTTCEEEEEEECCCSTTCCTTSCEEEEEEEET
T ss_pred EEEEecCCCHH-----HHHHHHHc-CCCHHHHHHHhCCCCCC-ceEEeCCceEEEEEecCccCCCCCcccEEEEEEEEeC
Confidence 78887654321 23456666 88764433221111122 4444444 4422 2 2335667888
Q ss_pred CeeEeecCCChhHHHHHHHHHHhhcccCCCCcccccCCccccccCCcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 015836 116 DEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQ 195 (399)
Q Consensus 116 d~VLLfd~~~~~v~~fl~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFEfrALEa~L~~v~s~Le~e 195 (399)
+.|+=+..... ..+..+..|+.... + . .-|. ..|-++|..++..+-.-
T Consensus 105 ~~lITvr~~~~---~~~~~v~~~l~~~~-~-------------------------~-~~~~--~ll~~lld~ivd~y~~~ 152 (252)
T 3ck6_A 105 GALISTRKIPS---RAIMEIRQALAEHK-G-------------------------P-KSLA--SLLNQIIEGLNGKIDLY 152 (252)
T ss_dssp TEEEEEESSCC---HHHHHHHHHHHTTC-S-------------------------C-SSHH--HHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCc---chHHHHHHHHHhCC-C-------------------------C-CCHH--HHHHHHHHHHHHHHHHH
Confidence 88777765432 23444555553211 0 0 1232 34447777777666655
Q ss_pred HHHHHHHHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCHHHHhhcccccccccccccccCcccc
Q 015836 196 AAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSV 275 (399)
Q Consensus 196 ~~~Le~~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddDeDMa~MyLT~k~~~~~~~~~~~~~~ 275 (399)
+..++.. +++|+.. ...+.++..+|+.+..|..-+...|+++..|+..+..+ +
T Consensus 153 l~~l~~~----id~lE~~--~~~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~~~~---~------------------ 205 (252)
T 3ck6_A 153 LDTIEET----LNEFDVN--DESTYNHIAAQKALISIKRFIRPQQYAIRDLIESESEL---V------------------ 205 (252)
T ss_dssp HHHHHHH----HHTCCTT--CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH---H------------------
T ss_pred HHHHHHH----HHHHHcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---C------------------
Confidence 5544444 4455544 23578899999999999999999999999987543211 0
Q ss_pred ccccCCCccccCCCCCCCCCCCchhhhhhhhhhhhhccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015836 276 LGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYID 355 (399)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~eElEmLLEaYf~qiD~~~~~l~~L~e~Id 355 (399)
++....+.--+.++..+...++.+++.+.
T Consensus 206 ---------------------------------------------------~~~~~~~rdv~d~~~~~~e~i~~~re~~~ 234 (252)
T 3ck6_A 206 ---------------------------------------------------TSRPHQYRFAHNNITRINETIEFYLGEVA 234 (252)
T ss_dssp ---------------------------------------------------HTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112233445567777888888888888
Q ss_pred hHHHhhHHhcccCcccccchh
Q 015836 356 DTEDFINIQLVCFFSIDNKLC 376 (399)
Q Consensus 356 dTEd~InI~LD~~~~~RN~Li 376 (399)
..-|.+.-..+. +.|+.|
T Consensus 235 ~l~d~~~s~~s~---~~N~~m 252 (252)
T 3ck6_A 235 LFQDEIKHNRDE---KTNKNS 252 (252)
T ss_dssp HHHHHHHHHHHH---C-----
T ss_pred HHHHHHHHHHHH---HHccCC
Confidence 888888888888 888765
No 7
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=85.71 E-value=3 Score=32.33 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 015836 185 LEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDE 242 (399)
Q Consensus 185 L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rvq~VRd~ 242 (399)
++.-+..|++-+..|.+....+|.+.++.- ..||+|++.++.+++.+++.
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ--------~KLKqRit~LE~~~~~~~~~ 54 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQ--------QKLKQRLTKVEKFLKPLIDT 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcccCCC
Confidence 456678888889999999999998887531 56899999999998875543
No 8
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=73.25 E-value=8.9 Score=27.00 Aligned_cols=44 Identities=30% Similarity=0.334 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHH
Q 015836 185 LEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRV 236 (399)
Q Consensus 185 L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rv 236 (399)
++.-+..||+-+..|.+....+|.+.++.- ..||+|++.++.+|
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq--------~KlKqRit~lE~~v 46 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQ--------MKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcC
Confidence 456678888888889999999988887531 56899999998764
No 9
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=66.68 E-value=16 Score=33.53 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCH
Q 015836 180 ALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDD 250 (399)
Q Consensus 180 ALEa~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddD 250 (399)
+|-++|..++..+-.-+..++..+..+=+.+-.+-+...+.++..+|+.+..|..-+.-.+++|..|+..+
T Consensus 172 ll~~lld~ivd~y~~~l~~i~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (269)
T 2bbh_A 172 LLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 242 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556666666655555555555333222222222345689999999999999999999999999998754
No 10
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=61.35 E-value=17 Score=33.40 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCH
Q 015836 180 ALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDD 250 (399)
Q Consensus 180 ALEa~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddD 250 (399)
+|-++|..++..+-.-+..++..+..+=+.+-.+-+ ..++++..+|+.+..|..-+.-.+++|..++..+
T Consensus 173 ll~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~-~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (266)
T 2hn1_A 173 LAYTILDAVVDSYFEALLKISDEIEVLEDEVVSGDS-TLIGKIHSLKREILAFRNAVWPLRDVLSFFTRVE 242 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456677777777666666666665555444543334 6688999999999999999999999999998653
No 11
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=54.77 E-value=30 Score=33.17 Aligned_cols=58 Identities=22% Similarity=0.218 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhhHHHHHHHHHH
Q 015836 180 ALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQK 238 (399)
Q Consensus 180 ALEa~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is~~~LerLr~lK~rL~~l~~rvq~ 238 (399)
.||++-..+...+=.++..|...+..+..+|...+... -+|+..|+.|+..|+.+|..
T Consensus 25 eLe~V~n~tL~gilRQL~dLs~~A~dIF~eL~~e~~~~-~~R~~~L~~RI~~L~~~v~~ 82 (279)
T 3p8c_D 25 ELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSF-SFRVNSLQERVDRLSVSVTQ 82 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccc
Confidence 48888888888998999999999999999998765432 24555566666666555543
No 12
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=41.39 E-value=30 Score=27.58 Aligned_cols=66 Identities=21% Similarity=0.380 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhccChhhHHHHHHHhhh----HHHHHHHHHHHHHHHHHhhCCH
Q 015836 182 EVALEAACTFLDSQAAELEIEAY-------PLLDELTSKISTLNLERVRRLKSR----LVALTRRVQKVRDEIEQLMDDD 250 (399)
Q Consensus 182 Ea~L~~v~s~Le~e~~~Le~~~~-------~~Ld~L~~~Is~~~LerLr~lK~r----L~~l~~rvq~VRd~LeelLddD 250 (399)
|..|..+...++.++..+..... -+|-.| ++ -+.+..++.+ +..++.+++.+.+.|++.|.++
T Consensus 25 ee~l~~aA~~vd~~~~~i~~~~~~~~~~r~~vmaAL--nl----adel~~~~~~~~~~~~~~~~~i~~L~~~le~aL~~~ 98 (104)
T 1t3u_A 25 RANLESAARYLDGKMREIRSSGKVIGADRVAVMAAL--NI----THDLLHRKERLDQESSSTRERVRELLDRVDRALANP 98 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCSCSHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677788888888887755321 111111 11 1233444443 7789999999999999998776
Q ss_pred HHH
Q 015836 251 GDM 253 (399)
Q Consensus 251 eDM 253 (399)
...
T Consensus 99 ~~~ 101 (104)
T 1t3u_A 99 ADA 101 (104)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 13
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=40.70 E-value=48 Score=20.09 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=20.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHh
Q 015836 222 VRRLKSRLVALTRRVQKVRDEIEQL 246 (399)
Q Consensus 222 Lr~lK~rL~~l~~rvq~VRd~Leel 246 (399)
+-++|..+-++...|+.++|++.++
T Consensus 2 vyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhcc
Confidence 4577888888889998888887764
No 14
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=26.50 E-value=1.9e+02 Score=21.21 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=38.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChh--hHHHHHHHhhh-HHHHHHHHHHHHHHHHHhh
Q 015836 175 PFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTL--NLERVRRLKSR-LVALTRRVQKVRDEIEQLM 247 (399)
Q Consensus 175 PFEfrALEa~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is~~--~LerLr~lK~r-L~~l~~rvq~VRd~LeelL 247 (399)
+=|+..|-..|......|+.........+..+-.+|.+-++.. ..+.+..-... +..+...+..+...++++|
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~~~~~~~~i~~~~~~l~~~i~~ll 111 (114)
T 3zcc_A 36 ADEIGILAKSIERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFI 111 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5689998888888888887766654444444444443322111 11111111112 2455555666666666655
No 15
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=25.76 E-value=3.2e+02 Score=26.90 Aligned_cols=66 Identities=14% Similarity=0.282 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhh----HHHHHHHhhhHHHHHHHHHHHHHHHH
Q 015836 178 FRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLN----LERVRRLKSRLVALTRRVQKVRDEIE 244 (399)
Q Consensus 178 frALEa~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~~Is~~~----LerLr~lK~rL~~l~~rvq~VRd~Le 244 (399)
-.|+| ||..+...++.+....|.-....++.....-.... ++.-..||++|.++...-++..+.|+
T Consensus 160 ~~a~~-af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~ 229 (373)
T 3hhm_B 160 RTAIE-AFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLK 229 (373)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777 67888888988888777766666665543222222 34445678888877766666555554
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.59 E-value=3.7e+02 Score=27.06 Aligned_cols=43 Identities=12% Similarity=-0.062 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHhccc
Q 015836 325 SVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLVC 367 (399)
Q Consensus 325 d~eElEmLLEaYf~qiD~~~~~l~~L~e~IddTEd~InI~LD~ 367 (399)
+.+++|--+|.-..++.++-++++.+++.|..-++-++=+-|.
T Consensus 545 ~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~ 587 (597)
T 3oja_B 545 ENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDT 587 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4567777788888888888888888888888888877766665
No 17
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=24.38 E-value=40 Score=23.87 Aligned_cols=12 Identities=42% Similarity=0.922 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHH
Q 015836 330 EMLLEAYFVVID 341 (399)
Q Consensus 330 EmLLEaYf~qiD 341 (399)
|+|+|+|++.++
T Consensus 9 e~LiesY~~A~e 20 (48)
T 3fyr_A 9 ELLIESYFKATE 20 (48)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999765
No 18
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=21.26 E-value=3.9e+02 Score=22.90 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhccC--hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhhCCHHHH
Q 015836 179 RALEVALEAACTFLDSQAAELEIEAYP---LLDELTSKIS--TLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDM 253 (399)
Q Consensus 179 rALEa~L~~v~s~Le~e~~~Le~~~~~---~Ld~L~~~Is--~~~LerLr~lK~rL~~l~~rvq~VRd~LeelLddDeDM 253 (399)
..|...++.+|..|+.-...|+.++.. +..-|..-.. ...+......-+.-..+..||..|+..|+..+++=.|+
T Consensus 71 e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sLPDl 150 (152)
T 4fla_A 71 ERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPDL 150 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 567777788888888877777776543 3333332111 11122222222223345566777888887776654444
No 19
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.24 E-value=2.7e+02 Score=27.42 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=9.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Q 015836 221 RVRRLKSRLVALTRRVQKVRDEIE 244 (399)
Q Consensus 221 rLr~lK~rL~~l~~rvq~VRd~Le 244 (399)
++-.+-..++.++++++..+..++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444443
No 20
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=20.71 E-value=4.1e+02 Score=22.96 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015836 181 LEVALEAACTFLDSQAAELEIEAYPLLDELTS 212 (399)
Q Consensus 181 LEa~L~~v~s~Le~e~~~Le~~~~~~Ld~L~~ 212 (399)
|+-.+...-..+...+..+.....|..++|..
T Consensus 98 l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~ 129 (185)
T 3r2p_A 98 VQPYLDDFQKKWQEEMELYRQKVEPLRAELQE 129 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444555444443
Done!