Query 015838
Match_columns 399
No_of_seqs 383 out of 1751
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 01:22:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2738 Putative methionine am 100.0 6E-115 1E-119 811.0 31.3 361 10-392 4-366 (369)
2 PLN03158 methionine aminopepti 100.0 2E-104 3E-109 797.6 40.8 391 6-398 3-393 (396)
3 COG0024 Map Methionine aminope 100.0 4.3E-62 9.2E-67 460.0 28.5 249 140-388 3-254 (255)
4 PRK12897 methionine aminopepti 100.0 1.1E-56 2.3E-61 428.2 28.9 246 140-385 2-247 (248)
5 PRK07281 methionine aminopepti 100.0 2.1E-56 4.5E-61 433.3 29.6 250 139-388 1-282 (286)
6 PRK12896 methionine aminopepti 100.0 5.4E-55 1.2E-59 417.3 30.0 249 138-386 6-255 (255)
7 TIGR00500 met_pdase_I methioni 100.0 1.2E-54 2.6E-59 413.4 30.0 246 141-386 2-247 (247)
8 PRK12318 methionine aminopepti 100.0 2.1E-54 4.5E-59 421.1 30.1 246 140-386 41-289 (291)
9 PRK05716 methionine aminopepti 100.0 1.1E-53 2.4E-58 407.5 29.8 249 139-387 2-250 (252)
10 cd01086 MetAP1 Methionine Amin 100.0 7.3E-50 1.6E-54 378.1 28.6 238 148-385 1-238 (238)
11 PRK09795 aminopeptidase; Provi 100.0 1E-48 2.2E-53 392.5 26.3 225 136-386 121-351 (361)
12 PRK10879 proline aminopeptidas 100.0 7.5E-48 1.6E-52 394.7 25.8 243 136-395 167-429 (438)
13 COG0006 PepP Xaa-Pro aminopept 100.0 4.9E-47 1.1E-51 383.2 25.8 230 135-391 147-380 (384)
14 cd01090 Creatinase Creatine am 100.0 2.6E-46 5.7E-51 352.5 25.9 225 148-385 1-228 (228)
15 PRK15173 peptidase; Provisiona 100.0 3.8E-46 8.1E-51 368.4 26.7 228 135-390 88-318 (323)
16 cd01087 Prolidase Prolidase. E 100.0 4.7E-46 1E-50 353.5 25.0 223 148-385 1-243 (243)
17 TIGR02993 ectoine_eutD ectoine 100.0 1.4E-45 2.9E-50 373.5 24.3 228 135-391 151-387 (391)
18 PRK14575 putative peptidase; P 100.0 2.9E-45 6.3E-50 372.6 26.8 227 136-390 172-401 (406)
19 PRK14576 putative endopeptidas 100.0 1E-44 2.3E-49 368.4 26.9 228 135-390 170-400 (405)
20 TIGR00495 crvDNA_42K 42K curve 100.0 5.2E-43 1.1E-47 352.7 29.1 245 141-386 12-337 (389)
21 cd01092 APP-like Similar to Pr 100.0 9.8E-43 2.1E-47 321.7 25.3 207 148-380 1-208 (208)
22 PRK13607 proline dipeptidase; 100.0 5.7E-43 1.2E-47 358.4 24.7 244 137-387 156-440 (443)
23 cd01085 APP X-Prolyl Aminopept 100.0 2.9E-41 6.3E-46 317.3 23.9 209 149-382 5-221 (224)
24 PTZ00053 methionine aminopepti 100.0 2.9E-40 6.3E-45 335.6 27.6 237 140-386 150-467 (470)
25 PF00557 Peptidase_M24: Metall 100.0 1.1E-40 2.4E-45 308.4 22.5 204 149-377 1-207 (207)
26 cd01089 PA2G4-like Related to 100.0 3.6E-40 7.9E-45 310.6 24.3 214 148-385 1-228 (228)
27 PRK08671 methionine aminopepti 100.0 1.1E-39 2.3E-44 318.0 27.5 227 147-385 1-291 (291)
28 cd01091 CDC68-like Related to 100.0 4.5E-40 9.8E-45 312.7 23.8 227 148-385 1-243 (243)
29 cd01066 APP_MetAP A family inc 100.0 1.5E-39 3.3E-44 297.5 24.3 206 148-380 1-207 (207)
30 TIGR00501 met_pdase_II methion 100.0 7E-39 1.5E-43 312.7 27.4 229 145-385 2-295 (295)
31 cd01088 MetAP2 Methionine Amin 100.0 6.6E-39 1.4E-43 312.5 26.8 226 148-385 1-291 (291)
32 KOG2414 Putative Xaa-Pro amino 100.0 7.5E-39 1.6E-43 311.2 17.0 239 137-394 223-480 (488)
33 KOG2737 Putative metallopeptid 100.0 1.7E-34 3.8E-39 278.2 14.2 254 137-395 180-475 (492)
34 KOG1189 Global transcriptional 99.9 1.1E-23 2.3E-28 217.3 17.7 243 136-397 131-389 (960)
35 KOG2413 Xaa-Pro aminopeptidase 99.8 2.2E-20 4.8E-25 190.7 17.6 224 137-382 302-538 (606)
36 KOG2775 Metallopeptidase [Gene 99.8 9.9E-19 2.1E-23 165.0 16.7 234 143-386 80-394 (397)
37 COG5406 Nucleosome binding fac 99.7 1.9E-16 4E-21 161.4 15.5 244 136-396 164-427 (1001)
38 KOG2776 Metallopeptidase [Gene 99.7 1.1E-15 2.5E-20 147.6 19.2 244 141-386 14-340 (398)
39 PLN03144 Carbon catabolite rep 99.4 3.7E-13 8E-18 141.8 4.5 49 14-62 64-113 (606)
40 PF01753 zf-MYND: MYND finger; 97.9 5.5E-06 1.2E-10 55.5 1.5 35 15-56 1-35 (37)
41 PLN03158 methionine aminopepti 97.5 0.00071 1.5E-08 69.0 10.9 116 240-377 127-247 (396)
42 cd01086 MetAP1 Methionine Amin 97.4 0.0014 2.9E-08 61.9 11.1 103 255-377 2-105 (238)
43 cd01066 APP_MetAP A family inc 97.4 0.0027 5.9E-08 57.4 12.4 102 149-252 102-204 (207)
44 KOG1710 MYND Zn-finger and ank 97.3 8.4E-05 1.8E-09 71.2 1.4 40 13-59 320-360 (396)
45 cd01092 APP-like Similar to Pr 97.2 0.0054 1.2E-07 56.2 11.8 101 149-251 103-204 (208)
46 cd01088 MetAP2 Methionine Amin 97.1 0.0037 8E-08 61.2 10.6 98 255-377 2-100 (291)
47 PRK05716 methionine aminopepti 96.9 0.011 2.4E-07 56.2 11.6 100 150-252 119-240 (252)
48 PRK12896 methionine aminopepti 96.9 0.007 1.5E-07 57.6 10.1 109 245-377 5-120 (255)
49 TIGR00500 met_pdase_I methioni 96.7 0.022 4.7E-07 54.1 12.2 100 150-252 117-238 (247)
50 PRK15173 peptidase; Provisiona 96.7 0.02 4.2E-07 57.0 12.0 103 149-251 202-305 (323)
51 PRK09795 aminopeptidase; Provi 96.6 0.032 6.8E-07 56.2 12.9 106 144-251 235-341 (361)
52 cd01090 Creatinase Creatine am 96.6 0.033 7.1E-07 52.5 12.1 100 150-252 110-220 (228)
53 PRK14575 putative peptidase; P 96.5 0.028 6.1E-07 57.6 12.0 99 150-252 286-389 (406)
54 PRK12897 methionine aminopepti 96.5 0.025 5.4E-07 53.9 10.7 100 150-252 118-239 (248)
55 TIGR02993 ectoine_eutD ectoine 96.5 0.027 5.9E-07 57.4 11.5 98 150-251 271-373 (391)
56 PRK14576 putative endopeptidas 96.4 0.04 8.6E-07 56.5 12.3 100 150-251 285-387 (405)
57 PRK12318 methionine aminopepti 96.3 0.046 9.9E-07 53.6 11.5 86 150-238 159-247 (291)
58 cd01091 CDC68-like Related to 96.2 0.044 9.6E-07 52.3 10.6 100 149-252 119-234 (243)
59 COG0024 Map Methionine aminope 96.1 0.041 8.8E-07 52.8 10.0 87 255-344 12-101 (255)
60 PRK07281 methionine aminopepti 96.1 0.056 1.2E-06 52.9 11.1 85 150-237 149-237 (286)
61 cd01087 Prolidase Prolidase. E 96.1 0.064 1.4E-06 50.7 11.2 102 150-251 104-234 (243)
62 PF00557 Peptidase_M24: Metall 96.1 0.046 9.9E-07 50.2 9.9 97 255-375 1-98 (207)
63 TIGR00495 crvDNA_42K 42K curve 96.0 0.054 1.2E-06 55.3 10.9 104 256-377 21-130 (389)
64 PRK08671 methionine aminopepti 96.0 0.12 2.6E-06 50.6 13.0 95 150-251 102-205 (291)
65 cd01089 PA2G4-like Related to 95.8 0.099 2.1E-06 49.1 11.0 99 149-252 120-220 (228)
66 KOG2738 Putative methionine am 95.7 0.041 9E-07 53.3 7.9 85 256-344 124-211 (369)
67 TIGR00501 met_pdase_II methion 95.5 0.14 3.1E-06 50.2 11.3 98 255-377 6-104 (295)
68 COG0006 PepP Xaa-Pro aminopept 95.2 0.19 4.1E-06 51.0 11.4 98 150-252 263-367 (384)
69 PF04438 zf-HIT: HIT zinc fing 94.7 0.016 3.6E-07 36.9 1.4 29 12-48 2-30 (30)
70 PTZ00053 methionine aminopepti 94.4 0.4 8.7E-06 50.0 11.5 98 256-376 160-262 (470)
71 PRK10879 proline aminopeptidas 93.3 0.97 2.1E-05 46.9 11.9 101 151-251 284-410 (438)
72 PF09889 DUF2116: Uncharacteri 91.0 0.18 4E-06 37.3 2.3 34 24-59 4-37 (59)
73 cd01085 APP X-Prolyl Aminopept 90.8 4.2 9.1E-05 38.2 12.0 96 152-251 114-215 (224)
74 PRK13607 proline dipeptidase; 87.8 3.4 7.4E-05 43.0 9.8 88 152-239 271-391 (443)
75 PRK00418 DNA gyrase inhibitor; 85.8 0.47 1E-05 35.5 1.6 30 22-51 5-37 (62)
76 PF13824 zf-Mss51: Zinc-finger 84.4 1.2 2.5E-05 32.6 3.0 38 15-59 2-43 (55)
77 KOG2776 Metallopeptidase [Gene 82.4 7.1 0.00015 39.2 8.5 101 256-386 23-141 (398)
78 KOG2857 Predicted MYND Zn-fing 81.4 4.4 9.5E-05 35.2 5.8 28 13-48 6-34 (157)
79 PRK01343 zinc-binding protein; 79.9 1.1 2.3E-05 33.0 1.5 26 24-50 10-35 (57)
80 COG3024 Uncharacterized protei 78.0 1.4 3.1E-05 32.9 1.6 13 38-50 25-37 (65)
81 PF03884 DUF329: Domain of unk 77.3 0.88 1.9E-05 33.5 0.4 27 24-50 3-32 (57)
82 KOG1189 Global transcriptional 71.8 15 0.00033 40.3 7.9 98 151-252 259-368 (960)
83 KOG2775 Metallopeptidase [Gene 67.7 34 0.00073 33.8 8.7 83 255-343 86-174 (397)
84 PF02069 Metallothio_Pro: Prok 67.4 2.5 5.3E-05 30.5 0.7 20 31-50 20-39 (52)
85 PF06467 zf-FCS: MYM-type Zinc 63.1 5 0.00011 27.1 1.6 35 13-49 7-42 (43)
86 PRK04023 DNA polymerase II lar 61.7 4.7 0.0001 45.5 1.9 38 4-44 618-656 (1121)
87 KOG3612 PHD Zn-finger protein 59.9 3.2 7E-05 43.5 0.3 37 15-60 530-566 (588)
88 cd01666 TGS_DRG_C TGS_DRG_C: 59.5 31 0.00067 26.8 5.6 52 169-231 21-73 (75)
89 cd02249 ZZ Zinc finger, ZZ typ 57.0 3.4 7.4E-05 28.7 -0.1 37 14-58 2-41 (46)
90 COG4306 Uncharacterized protei 52.4 2.6 5.6E-05 35.9 -1.5 22 11-32 27-48 (160)
91 COG3350 Uncharacterized conser 47.4 7.7 0.00017 28.0 0.5 12 39-50 28-39 (53)
92 KOG2858 Uncharacterized conser 46.6 8.2 0.00018 38.6 0.7 37 5-49 10-47 (390)
93 COG2888 Predicted Zn-ribbon RN 46.4 9.9 0.00022 28.2 0.9 21 15-35 30-50 (61)
94 PRK14890 putative Zn-ribbon RN 44.3 12 0.00026 27.7 1.1 22 14-35 27-48 (59)
95 COG4068 Uncharacterized protei 41.5 11 0.00025 27.7 0.6 23 24-48 9-31 (64)
96 cd02341 ZZ_ZZZ3 Zinc finger, Z 40.1 11 0.00025 26.6 0.4 39 14-59 2-44 (48)
97 COG5406 Nucleosome binding fac 39.7 98 0.0021 33.7 7.2 82 145-234 298-384 (1001)
98 PF13248 zf-ribbon_3: zinc-rib 39.7 15 0.00033 22.2 0.9 18 12-29 2-22 (26)
99 PF07305 DUF1454: Protein of u 39.4 1.9E+02 0.0042 26.6 8.2 74 254-341 114-187 (200)
100 PF12855 Ecl1: Life-span regul 38.7 17 0.00037 25.1 1.1 16 37-52 21-36 (43)
101 PF00254 FKBP_C: FKBP-type pep 38.0 82 0.0018 24.6 5.2 50 221-279 3-59 (94)
102 PF03833 PolC_DP2: DNA polymer 36.1 12 0.00026 41.7 0.0 37 4-43 647-684 (900)
103 COG1996 RPC10 DNA-directed RNA 35.7 15 0.00032 26.3 0.4 22 9-30 3-31 (49)
104 cd02335 ZZ_ADA2 Zinc finger, Z 35.6 11 0.00024 26.6 -0.2 37 14-58 2-44 (49)
105 PRK01490 tig trigger factor; P 35.4 1.9E+02 0.0041 29.7 8.8 57 172-252 131-191 (435)
106 PRK14714 DNA polymerase II lar 35.4 17 0.00037 42.2 1.1 25 8-32 663-688 (1337)
107 PF09297 zf-NADH-PPase: NADH p 35.2 15 0.00032 23.4 0.3 20 12-31 3-29 (32)
108 PRK00398 rpoP DNA-directed RNA 34.7 19 0.00041 24.9 0.9 21 11-31 2-29 (46)
109 PF09538 FYDLN_acid: Protein o 34.5 19 0.00042 30.0 1.0 22 12-33 9-36 (108)
110 cd02340 ZZ_NBR1_like Zinc fing 34.0 16 0.00034 25.1 0.3 34 14-58 2-38 (43)
111 PF05184 SapB_1: Saposin-like 33.7 77 0.0017 20.5 3.7 34 154-187 3-36 (39)
112 PF12773 DZR: Double zinc ribb 32.8 27 0.00059 24.2 1.4 31 11-43 11-47 (50)
113 PF10415 FumaraseC_C: Fumarase 31.7 59 0.0013 23.6 3.0 35 150-184 10-49 (55)
114 TIGR00115 tig trigger factor. 31.3 2.4E+02 0.0053 28.6 8.7 58 172-252 119-180 (408)
115 PRK14891 50S ribosomal protein 31.3 22 0.00048 30.5 0.8 36 12-50 4-41 (131)
116 TIGR02098 MJ0042_CXXC MJ0042 f 30.8 25 0.00055 23.0 0.9 21 12-32 2-34 (38)
117 cd02345 ZZ_dah Zinc finger, ZZ 30.0 17 0.00038 25.6 0.0 37 14-58 2-44 (49)
118 PF14205 Cys_rich_KTR: Cystein 29.6 22 0.00048 25.9 0.5 21 14-34 6-39 (55)
119 smart00659 RPOLCX RNA polymera 29.6 25 0.00054 24.4 0.7 20 12-31 2-27 (44)
120 PF13717 zinc_ribbon_4: zinc-r 29.4 27 0.00059 23.0 0.9 20 12-31 2-33 (36)
121 PF04181 RPAP2_Rtr1: Rtr1/RPAP 29.2 28 0.0006 27.1 1.0 12 39-50 59-70 (79)
122 PF10571 UPF0547: Uncharacteri 28.4 30 0.00064 21.2 0.8 17 14-30 2-21 (26)
123 COG1054 Predicted sulfurtransf 28.4 42 0.00091 33.1 2.3 49 3-56 234-286 (308)
124 PRK00420 hypothetical protein; 27.7 25 0.00054 29.6 0.5 24 9-32 20-49 (112)
125 PF02829 3H: 3H domain; Inter 27.7 1.4E+02 0.003 24.4 4.9 68 229-298 23-97 (98)
126 PRK14559 putative protein seri 27.5 35 0.00076 37.3 1.8 31 12-44 15-46 (645)
127 cd04938 TGS_Obg-like TGS_Obg-l 27.4 1E+02 0.0022 23.9 3.9 47 169-231 28-74 (76)
128 PF07754 DUF1610: Domain of un 26.9 31 0.00068 20.8 0.7 8 23-30 16-23 (24)
129 PF04945 YHS: YHS domain; Int 26.8 27 0.00058 24.2 0.5 12 39-50 25-36 (47)
130 cd02334 ZZ_dystrophin Zinc fin 25.1 22 0.00048 25.2 -0.2 29 14-50 2-34 (49)
131 PF09506 Salt_tol_Pase: Glucos 24.8 2.5E+02 0.0054 28.3 6.9 52 143-194 97-148 (381)
132 PF01155 HypA: Hydrogenase exp 24.6 23 0.0005 29.6 -0.2 23 12-34 70-97 (113)
133 cd02344 ZZ_HERC2 Zinc finger, 24.5 25 0.00054 24.6 -0.0 35 14-58 2-40 (45)
134 KOG2611 Neurochondrin/leucine- 24.4 38 0.00082 35.6 1.3 69 225-293 583-661 (698)
135 PF03604 DNA_RNApol_7kD: DNA d 24.3 40 0.00087 21.7 0.9 17 14-30 2-24 (32)
136 PF09723 Zn-ribbon_8: Zinc rib 24.3 39 0.00084 23.0 0.9 23 13-35 6-38 (42)
137 TIGR00354 polC DNA polymerase, 24.2 35 0.00076 38.6 1.1 33 7-42 620-653 (1095)
138 PRK05728 DNA polymerase III su 24.2 3.7E+02 0.008 23.2 7.4 101 150-260 14-119 (142)
139 PF03477 ATP-cone: ATP cone do 24.1 57 0.0012 25.5 2.0 32 160-191 39-74 (90)
140 PF14446 Prok-RING_1: Prokaryo 24.1 35 0.00076 24.8 0.7 21 11-31 4-29 (54)
141 PF12631 GTPase_Cys_C: Catalyt 24.1 1.8E+02 0.0039 22.0 4.8 42 253-294 10-51 (73)
142 TIGR02300 FYDLN_acid conserved 24.1 37 0.0008 29.1 1.0 21 12-32 9-35 (129)
143 PF13719 zinc_ribbon_5: zinc-r 24.0 39 0.00085 22.3 0.9 20 12-31 2-33 (37)
144 PF05142 DUF702: Domain of unk 23.9 34 0.00073 30.3 0.7 21 12-32 4-29 (154)
145 PRK12380 hydrogenase nickel in 23.9 39 0.00084 28.3 1.0 23 12-34 70-97 (113)
146 cd02338 ZZ_PCMF_like Zinc fing 23.4 26 0.00057 24.7 -0.1 29 14-50 2-34 (49)
147 TIGR02399 salt_tol_Pase glucos 23.0 2.7E+02 0.0059 28.1 6.8 52 143-194 103-154 (389)
148 KOG0320 Predicted E3 ubiquitin 22.5 45 0.00097 30.4 1.2 39 12-51 117-164 (187)
149 TIGR00100 hypA hydrogenase nic 22.3 43 0.00094 28.1 1.1 23 12-34 70-97 (115)
150 PF11023 DUF2614: Protein of u 20.8 38 0.00083 28.4 0.4 21 12-32 69-94 (114)
151 smart00834 CxxC_CXXC_SSSS Puta 20.7 52 0.0011 21.6 1.0 19 13-31 6-34 (41)
152 cd02339 ZZ_Mind_bomb Zinc fing 20.3 32 0.00069 23.9 -0.1 35 14-58 2-40 (45)
153 PF08394 Arc_trans_TRASH: Arch 20.2 52 0.0011 22.0 0.9 33 15-50 1-33 (37)
154 PF10122 Mu-like_Com: Mu-like 20.2 35 0.00076 24.5 0.0 23 13-35 5-36 (51)
No 1
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-115 Score=810.97 Aligned_cols=361 Identities=64% Similarity=1.091 Sum_probs=346.8
Q ss_pred cccccccc--cCCccccccchhhccCCCCCCccccChhHhhhhhHHHHHhhhhhccCCCCCCCCCCccccccchhcccCC
Q 015838 10 TTSLSCVR--CGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQ 87 (399)
Q Consensus 10 ~~~~~c~~--c~~~~~l~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (399)
....+|.+ |+++|+||||+|+|++|+ .+|||+|+|||.+|.+||++|.++. . ....
T Consensus 4 ~~~~~c~~~~c~~~a~l~Cp~c~~~~i~--~~~fc~q~cf~~~w~~hK~~h~~~~---~-----------------~~~~ 61 (369)
T KOG2738|consen 4 IAKISCEGLQCGSEASLQCPTCLKLGIK--SAYFCAQECFKNSWLSHKKLHRKAL---R-----------------IRKE 61 (369)
T ss_pred chhceeeccccCChhhccCchhhhcCCC--cccccCchhhhcchhhhhhhcccch---h-----------------hhhh
Confidence 55688966 999999999999999998 5899999999999999999997421 0 2235
Q ss_pred CCCCCCCCCcccCccccccCCCCcccCCCCCCCccccCCCCCCcCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 015838 88 ARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAAR 167 (399)
Q Consensus 88 ~~~~~~~~~~~~g~~~p~~~~~~~~vp~~i~~p~y~~~g~~~~e~~~~~~~~r~iKs~~EIe~~R~A~~ia~~~l~~~~~ 167 (399)
+.|+|||.|.|+|+||||++||+|.||++|+||||+.+|.+.+|+.......+.|++++||+.||+||+|++++|+.|..
T Consensus 62 g~~~p~p~~~~~g~Lr~~pvsprr~VP~hI~rPdya~~g~s~se~~~~~s~~i~i~~~e~ie~mR~ac~LarevLd~Aa~ 141 (369)
T KOG2738|consen 62 GQYNPWPKFRFTGPLRPGPVSPRRPVPDHIPRPDYADSGVSLSEQPEISSNEIKILDPEGIEGMRKACRLAREVLDYAAT 141 (369)
T ss_pred ccCCCCccccccCCccccCCCCCCcCCccCCCCchhhcCCcccccccccccceeccCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999999999999999999999988777788999999999999999999999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCCCCcCCCCCeEEEEEeeEeCCEEeceeeE
Q 015838 168 MIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNET 247 (399)
Q Consensus 168 ~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT 247 (399)
+++||+|++|||+++|++++++|+|||||||++||+|+|+|+|+++|||+|+.|+||+||||+||++++++|||+|+++|
T Consensus 142 ~v~PgvTTdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNEviCHGIPD~RpLedGDIvNiDVtvY~~GyHGDlneT 221 (369)
T KOG2738|consen 142 LVRPGVTTDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNEVICHGIPDSRPLEDGDIVNIDVTVYLNGYHGDLNET 221 (369)
T ss_pred hcCCCccHHHHHHHHHHHHHhcCCcCCCcccCCCchhhhcchhheeecCCCCcCcCCCCCEEeEEEEEEeccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCcccccceeeccCCccccCCCCCCCCCCCCC
Q 015838 248 YFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAV 327 (399)
Q Consensus 248 ~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~~~~~~GHGIG~~~he~P~i~~~~~~~~~ 327 (399)
|+||+++++.++|++.++||++.||+.+|||++++||++.|++++.++||++++.|||||||..||..|+|+||++|++.
T Consensus 222 ffvG~Vde~~k~LVkvT~EcL~kaI~~~kpGv~freiG~iI~kha~~~g~sVVr~ycGHGig~~FH~~PnipHya~n~a~ 301 (369)
T KOG2738|consen 222 FFVGNVDEKAKKLVKVTRECLEKAIAIVKPGVSFREIGNIIQKHATKNGYSVVRSYCGHGIGRVFHCAPNIPHYAKNKAP 301 (369)
T ss_pred eEeeccCHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhhhcCceeehhhhccccccccccCCCchhhcccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeCCCeeeccCCCCCCCC
Q 015838 328 GVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSPK 392 (399)
Q Consensus 328 ~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe~G~EiLT~~~~~~~~ 392 (399)
++|++||+|||||||+.|+|++.+|||+||++|+||.+++|||||+|||++|+||||.+.+++|-
T Consensus 302 GvM~~G~tFTIEPmit~G~~~d~tWPD~WT~vTaDG~~sAQFEhTlLVT~tG~EILT~r~~~~p~ 366 (369)
T KOG2738|consen 302 GVMKPGQTFTIEPMITIGTWEDITWPDDWTAVTADGKRSAQFEHTLLVTETGCEILTKRLPNSPW 366 (369)
T ss_pred ceeecCceEEeeeeecccccccccCCCCceEEecCCceecceeeEEEEecccceehhcccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998843
No 2
>PLN03158 methionine aminopeptidase; Provisional
Probab=100.00 E-value=1.6e-104 Score=797.63 Aligned_cols=391 Identities=85% Similarity=1.443 Sum_probs=365.9
Q ss_pred CccccccccccccCCccccccchhhccCCCCCCccccChhHhhhhhHHHHHhhhhhccCCCCCCCCCCccccccchhccc
Q 015838 6 DAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKK 85 (399)
Q Consensus 6 ~~~~~~~~~c~~c~~~~~l~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (399)
+++++..++|++|+|+|+||||+|+|+|+++..||||||+|||.+|++||.+|+..+... ......+..+.|.||...
T Consensus 3 ~~~~~~~~~c~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~~~~--~~~~~~~~~~~~~~~~~~ 80 (396)
T PLN03158 3 EALTTSPLACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSSHKSVHTKAKLSS--IGQNSDAPAEGWLYCLKK 80 (396)
T ss_pred cccCCCcccccCCCCcccccCccchhcCCCCCCceeECHHHHHHHHHHHHHHHHhhhhcc--cccccccccccccccccc
Confidence 456777788999999999999999999998778999999999999999999997533210 011222335678899987
Q ss_pred CCCCCCCCCCCcccCccccccCCCCcccCCCCCCCccccCCCCCCcCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHH
Q 015838 86 GQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAA 165 (399)
Q Consensus 86 ~~~~~~~~~~~~~~g~~~p~~~~~~~~vp~~i~~p~y~~~g~~~~e~~~~~~~~r~iKs~~EIe~~R~A~~ia~~~l~~~ 165 (399)
+...+++||+|+|||+||||++||++.||+||++|+|+.+|.|.++....+.+.|+|||++||+.||+|+++++++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~p~y~~~~~~~~~~~~~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a 160 (396)
T PLN03158 81 GQARTSKLPDFDWTGPLRPYPISPRRVVPDHIPKPDWALDGTPKIEPNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAA 160 (396)
T ss_pred cccccCCCCCCCCCcccccCCCCCCCCCCccCCCCccccCCCCccccccccccceeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999988877666678899999999999999999999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCCCCcCCCCCeEEEEEeeEeCCEEecee
Q 015838 166 ARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLN 245 (399)
Q Consensus 166 ~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~ 245 (399)
.+.++||+||.||+++++++++++|++|+++||.+||+++|+|.|++++||+|++++|++||+|+||++++++||++|++
T Consensus 161 ~~~irpGvTe~EI~~~v~~~~~~~Ga~ps~l~y~~fp~svcts~N~~i~Hgip~~r~L~~GDiV~iDvg~~~~GY~aD~t 240 (396)
T PLN03158 161 ARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGDLN 240 (396)
T ss_pred HHHccCCCCHHHHHHHHHHHHHHcCCccccccccCCCceeeecccccccCCCCCCccCCCCCEEEEEEeEEECCEEEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCcccccceeeccCCccccCCCCCCCCCCC
Q 015838 246 ETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNK 325 (399)
Q Consensus 246 RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~~~~~~GHGIG~~~he~P~i~~~~~~~ 325 (399)
|||+||++++++++++++++++++++|+++|||++++||+++++++++++||+++++|+|||||+.+||.|.|+||.+++
T Consensus 241 RT~~VG~~~~e~~~l~e~~~eal~~aI~~vkPGv~~~dI~~~i~~~~~~~G~~~v~~~~GHGIG~~~He~P~i~~~~~~~ 320 (396)
T PLN03158 241 ETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVVKSYCGHGIGELFHCAPNIPHYARNK 320 (396)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCccCCccCCccccccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred CCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeCCCeeeccCCCCCCCCcccccc
Q 015838 326 AVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSPKVYPWLN 398 (399)
Q Consensus 326 ~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe~G~EiLT~~~~~~~~~~~~~~ 398 (399)
..++|+|||||||||||+.|.+.+.+|||+||++|.||.+++|||||||||++|+|+||.+.|++|+...||.
T Consensus 321 ~~~~l~~GMVfTIEP~i~~g~~~~~~~~d~wt~~t~dG~~~aq~E~tvlVTe~G~EiLT~~~~~~~~~~~~~~ 393 (396)
T PLN03158 321 AVGVMKAGQVFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSPDVFPWLK 393 (396)
T ss_pred CCCEecCCcEEEECCeeccCcccceecCCCceEEecCCceeeEeeeEEEEeCCcceECCCCCCCCcccccccC
Confidence 7789999999999999999999999999999999999999999999999999999999999999999888985
No 3
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-62 Score=459.98 Aligned_cols=249 Identities=46% Similarity=0.744 Sum_probs=239.6
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCC
Q 015838 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD 219 (399)
Q Consensus 140 r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~ 219 (399)
+.+|+++||+.||+|++|++++++.+.+.++||+|+.||++++++.+.++|++|++++|.+||..+|+|+|++++||+|+
T Consensus 3 i~ikt~~eiek~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe~v~HgiP~ 82 (255)
T COG0024 3 ISIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNEVVAHGIPG 82 (255)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehhheeeecCCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCC-HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCC
Q 015838 220 -SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNAD-EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF 297 (399)
Q Consensus 220 -~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~-~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~ 297 (399)
+++|++||+|+||+|+.++||++|.++||.||+.+ +..++|.+++++|++++|+.+|||++++||+++|+++++++||
T Consensus 83 d~~vlk~GDiv~IDvg~~~dG~~~Dsa~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l~~Ig~aIq~~~~~~G~ 162 (255)
T COG0024 83 DKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGF 162 (255)
T ss_pred CCcccCCCCEEEEEEEEEECCeeeeEEEEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCC
Confidence 67999999999999999999999999999999666 5777899999999999999999999999999999999999999
Q ss_pred cccccceeeccCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCC-CCceEEeeCCeeeEEEEEEEEEe
Q 015838 298 SVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWP-DGWTAVTADGKRSAQFEHTLLVT 376 (399)
Q Consensus 298 ~~~~~~~GHGIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wp-D~wt~~t~~g~~~~~~EdtvlVT 376 (399)
++++.|+|||||..+|+.|.++||..+....+|+|||||+||||++.|++....++ |+||++|.|+..++||||||+||
T Consensus 163 ~vVr~~~GHgig~~~He~p~ip~y~~~~~~~~l~~Gmv~aIEPmi~~G~~~~~~~~~d~Wt~~t~d~~~~aq~EHTv~Vt 242 (255)
T COG0024 163 SVVRNLTGHGIGRELHEEPSIPNYGKDGTGVRLKEGMVFAIEPMINTGSGEVVEGPSDRWTLVTKDGSLSAQFEHTVIVT 242 (255)
T ss_pred EEeecccCCccCcccCCCCeeccccCCCCCcccCCCCEEEEeeEEEcCCCceEecCCCCeEEEeCCCCEEeEEEEEEEEe
Confidence 99999999999999999999999987766689999999999999999999999999 99999999999999999999999
Q ss_pred CCCeeeccCCCC
Q 015838 377 ETGVEVLTARLP 388 (399)
Q Consensus 377 e~G~EiLT~~~~ 388 (399)
++|+|+||.+.+
T Consensus 243 ~~g~eilT~~~~ 254 (255)
T COG0024 243 EDGCEILTLRPE 254 (255)
T ss_pred CCCcEEeeCCCC
Confidence 999999998743
No 4
>PRK12897 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=1.1e-56 Score=428.16 Aligned_cols=246 Identities=35% Similarity=0.576 Sum_probs=234.2
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCC
Q 015838 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD 219 (399)
Q Consensus 140 r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~ 219 (399)
+.|||++||+.||+|+++++++++++.+.++||+||.||++.++..+.++|+.....+|.+||..+++|.|+..+|+.|+
T Consensus 2 ~~iKs~~EI~~~r~A~~i~~~~~~~~~~~~~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~i~~g~n~~~~H~~p~ 81 (248)
T PRK12897 2 ITIKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICASVNDEMCHAFPA 81 (248)
T ss_pred ceeCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccCCCCcceEeccCCEeecCCCC
Confidence 47999999999999999999999999999999999999999999999999998765567789988999999999999999
Q ss_pred CCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCcc
Q 015838 220 SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV 299 (399)
Q Consensus 220 ~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~ 299 (399)
+++|++||+|++|+++.++||++|++|||++|+++++++++|++++++++++++++|||++++||++++++++++.||..
T Consensus 82 ~~~l~~Gd~V~iD~g~~~~GY~sD~tRT~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~~a~~~~~~~~g~~~ 161 (248)
T PRK12897 82 DVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSV 161 (248)
T ss_pred CcccCCCCEEEEEeeEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccceeeccCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeCCC
Q 015838 300 VKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETG 379 (399)
Q Consensus 300 ~~~~~GHGIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe~G 379 (399)
.++++|||||+.+||.|.+.++.+.++..+|+|||||||||+++.|......|.|+|++.|.+|.+++|+||||+||++|
T Consensus 162 ~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~l~~Gmv~tiEP~~~~~~~~~~~~~~~~~~~~~~g~~g~r~edtv~Vt~~G 241 (248)
T PRK12897 162 ARDFTGHGIGKEIHEEPAIFHFGKQGQGPELQEGMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITKDG 241 (248)
T ss_pred CCCeEECccCCcccCCCccCCCCCCCCCCCcCCCCEEEECCeEecCCCceEECCCCcEEEcCCCCeEeecceEEEEeCCc
Confidence 88999999999999999998765556677999999999999999988878889999999999999999999999999999
Q ss_pred eeeccC
Q 015838 380 VEVLTA 385 (399)
Q Consensus 380 ~EiLT~ 385 (399)
+|+||.
T Consensus 242 ~e~lt~ 247 (248)
T PRK12897 242 PIILTK 247 (248)
T ss_pred cEEeec
Confidence 999996
No 5
>PRK07281 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=2.1e-56 Score=433.35 Aligned_cols=250 Identities=28% Similarity=0.528 Sum_probs=233.0
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCC----CCCCceeeeCCCCccc
Q 015838 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY----HFFPKSCCTSVNEVIC 214 (399)
Q Consensus 139 ~r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~----~~fp~~v~~g~n~~~~ 214 (399)
++.|||++||+.||+|++|+.+++.++.+.++||+||.||++.++..+.++|+++..+++ .+||.++|+|.|+.++
T Consensus 1 m~~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~pG~te~ei~~~~~~~~~~~g~~~~~~G~~~~~~~f~~~v~~G~n~~~~ 80 (286)
T PRK07281 1 MITLKSAREIEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPYATCCGLNDEVA 80 (286)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCcccccCCCCcccCCCcceEEecccccc
Confidence 357999999999999999999999999999999999999999999999999998877654 5699999999999999
Q ss_pred cCCCCCCcCCCCCeEEEEEee---------------------------EeCCEEeceeeEEEeCCCCHHHHHHHHHHHHH
Q 015838 215 HGIPDSRKLEDGDIVNIDVTV---------------------------YYKGVHGDLNETYFVGNADEASRQLVQCTYEC 267 (399)
Q Consensus 215 Hg~p~~r~L~~GDiV~iD~g~---------------------------~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea 267 (399)
|+.|++++|++||+|+||+++ .|+||++|++|||++|++++++++++++++++
T Consensus 81 H~~p~~~~l~~Gd~v~iD~g~~~~~~~y~~d~~~~~~~~~~~~~~~~~~~~gy~~D~~rT~~vG~~~~~~~~l~~~~~ea 160 (286)
T PRK07281 81 HAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTESYRGGLADSCWAYAVGTPSDEVKNLMDVTKEA 160 (286)
T ss_pred CCCCCCcCcCCCCEEEEEecccccccccccccccccccccccccccccccCCEEeeeEEEEECCCCCHHHHHHHHHHHHH
Confidence 999999999999999999997 48999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHcCCcccccceeeccCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCc
Q 015838 268 LEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVW 347 (399)
Q Consensus 268 ~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~~~~~~GHGIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~ 347 (399)
++++++.+|||++++||+++++++++++||...++++|||||+.+||.|.++++...+...+|+|||||+|||+++.|.+
T Consensus 161 ~~~ai~~~kpG~~~~di~~a~~~~~~~~G~~~~~~~~GHGIGl~~hE~P~i~~~~~~~~~~~Le~GMV~tiEPgiy~~~~ 240 (286)
T PRK07281 161 MYRGIEQAVVGNRIGDIGAAIQEYAESRGYGVVRDLVGHGVGPTMHEEPMVPNYGTAGRGLRLREGMVLTIEPMINTGTW 240 (286)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHcCCccCCCeeeeeCCCccCCCCcCCCcccCCCCCEECCCCEEEECCeeEcCCc
Confidence 99999999999999999999999999999998889999999999999999987655566789999999999999999876
Q ss_pred c-cccCCCCceEEeeCCeeeEEEEEEEEEeCCCeeeccCCCC
Q 015838 348 R-DRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLP 388 (399)
Q Consensus 348 ~-~~~wpD~wt~~t~~g~~~~~~EdtvlVTe~G~EiLT~~~~ 388 (399)
. ...++|+||+++.+|.+++|+|||||||++|+|+||...+
T Consensus 241 ~~~~~~~~gw~~~~~~g~~gvr~EdtvlVT~~G~e~LT~~~~ 282 (286)
T PRK07281 241 EIDTDMKTGWAHKTLDGGLSCQYEHQFVITKDGPVILTSQGE 282 (286)
T ss_pred ceecccCCCceEEecCCCcEEEeccEEEEeCCcceECCCCCc
Confidence 4 3347899999999999999999999999999999997643
No 6
>PRK12896 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=5.4e-55 Score=417.27 Aligned_cols=249 Identities=41% Similarity=0.693 Sum_probs=235.3
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCC
Q 015838 138 HVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGI 217 (399)
Q Consensus 138 ~~r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~ 217 (399)
++++|||++||+.||+|+++++++++++.+.++||+||.||++.+.+.+.++|+.+++..+.+||..+++|.|...+|+.
T Consensus 6 ~~~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~i~pG~te~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~~~h~~ 85 (255)
T PRK12896 6 RGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEGYYGFPGSTCISVNEEVAHGI 85 (255)
T ss_pred CceeECCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHCCCEeCcccCCCCCcceEecCCCeeEecC
Confidence 35689999999999999999999999999999999999999999999999999998877788899999999999999999
Q ss_pred CCCCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCC
Q 015838 218 PDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF 297 (399)
Q Consensus 218 p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~ 297 (399)
|++++|++||+|++|+++.++||++|++|||++|++++++++++++++++++++++++|||++++||++++++++++.||
T Consensus 86 p~~~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~G~ 165 (255)
T PRK12896 86 PGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGY 165 (255)
T ss_pred CCCccCCCCCEEEEEEeEEECcEEEeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeccCCccccCCCC-CCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEe
Q 015838 298 SVVKSYCGHGIGELFHCAPNI-PHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVT 376 (399)
Q Consensus 298 ~~~~~~~GHGIG~~~he~P~i-~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVT 376 (399)
...++++|||||+.+||.|.+ .++...+++.+|++||||+|||+++.|....+.|+|+|++.+.+|.+++|+||||+||
T Consensus 166 ~~~~~~~GHgiG~~~he~p~~~~~~~~~~~~~~le~GmV~~iEp~i~~g~~~~~~~~~~~~~~~~~~~~~~~~edtv~vt 245 (255)
T PRK12896 166 SVVRDLTGHGVGRSLHEEPSVILTYTDPLPNRLLRPGMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVT 245 (255)
T ss_pred EeccCcccCCcCcccccCCCccccCCCCCCCCEecCCcEEEEeceEEcCCCceEEcCCCCEEEecCCCeEEEEEEEEEEc
Confidence 887889999999999999954 3343345678999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeccCC
Q 015838 377 ETGVEVLTAR 386 (399)
Q Consensus 377 e~G~EiLT~~ 386 (399)
++|+|+||.+
T Consensus 246 ~~G~e~Lt~~ 255 (255)
T PRK12896 246 RDGPEILTDR 255 (255)
T ss_pred CCcceecCCC
Confidence 9999999974
No 7
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=100.00 E-value=1.2e-54 Score=413.39 Aligned_cols=246 Identities=49% Similarity=0.833 Sum_probs=234.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCCC
Q 015838 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDS 220 (399)
Q Consensus 141 ~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~ 220 (399)
.|||++||++||+|+++++++++++.+.++||+||.||++.++..+.++|+.+...++.+||.++++|.|+.++|+.|++
T Consensus 2 ~iKs~~Ei~~~r~A~~i~~~~~~~~~~~i~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~~~H~~~~~ 81 (247)
T TIGR00500 2 SLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYGFPGSVCISVNEVVIHGIPDK 81 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHCCCCccccCCCCCCceeEeccccEEEecCCCC
Confidence 69999999999999999999999999999999999999999999999999988777788899999999999999999999
Q ss_pred CcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCccc
Q 015838 221 RKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300 (399)
Q Consensus 221 r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~~ 300 (399)
++|++||+|++|+++.|+||++|++|||++|++++++++++++++++++++++.+|||++++||+++++++++++|+...
T Consensus 82 ~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~g~~~~ 161 (247)
T TIGR00500 82 KVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVV 161 (247)
T ss_pred cccCCCCEEEEEEEEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccceeeccCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeCCCe
Q 015838 301 KSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGV 380 (399)
Q Consensus 301 ~~~~GHGIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe~G~ 380 (399)
++++|||||+.+||.|.++.+....++.+|++||||+|||+++.+......++++|+....+|.+++|+||||+||++|+
T Consensus 162 ~~~~GHgiG~~~~e~p~i~~~~~~~~~~~l~~gmv~~iEp~i~~~~~~~~~~~~~~~~~~~~~~~g~ried~v~Vt~~G~ 241 (247)
T TIGR00500 162 REYCGHGIGRKFHEEPQIPNYGKKFTNVRLKEGMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITDNGP 241 (247)
T ss_pred cCccCCccCcccCCCCccCCcCcCCCCCEecCCCEEEEeeEEEcCCCcEEECCCCCEEEccCCCeEEEEeEEEEEcCCcc
Confidence 88899999999999998887655556789999999999999999877777889999999999999999999999999999
Q ss_pred eeccCC
Q 015838 381 EVLTAR 386 (399)
Q Consensus 381 EiLT~~ 386 (399)
|+||.|
T Consensus 242 e~Lt~~ 247 (247)
T TIGR00500 242 EILTER 247 (247)
T ss_pred EEccCC
Confidence 999975
No 8
>PRK12318 methionine aminopeptidase; Provisional
Probab=100.00 E-value=2.1e-54 Score=421.09 Aligned_cols=246 Identities=46% Similarity=0.791 Sum_probs=229.2
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCC--CCCceeeeCCCCccccCC
Q 015838 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH--FFPKSCCTSVNEVICHGI 217 (399)
Q Consensus 140 r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~--~fp~~v~~g~n~~~~Hg~ 217 (399)
++|||++||+.||+|++|++++++++.+.++||+||.||+++++..+.+.|+.|+.++|. +||.++|+|.|+.++|+.
T Consensus 41 i~IKs~~EIe~~R~Aa~I~~~a~~a~~~~irpG~tE~Eiaa~~~~~~~~~G~~~~~~~~~~~~f~~~v~~g~n~~~~H~~ 120 (291)
T PRK12318 41 IIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPLNYGSPPFPKTICTSLNEVICHGI 120 (291)
T ss_pred eEECCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCccccccCCCCCCcceEeeccceeecCC
Confidence 479999999999999999999999999999999999999999998888899988877774 599999999999999999
Q ss_pred CCCCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCC
Q 015838 218 PDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF 297 (399)
Q Consensus 218 p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~ 297 (399)
|++++|++||+|++|+++.++||++|++|||++|+++++++++++++.++++++++.+|||++++||+++++++++++||
T Consensus 121 p~~~~l~~GD~V~vD~g~~~~GY~aDitRT~~vG~~~~~~~~~~~~~~~a~~~~i~~~rpG~~~~dv~~a~~~~~~~~G~ 200 (291)
T PRK12318 121 PNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGF 200 (291)
T ss_pred CCCCccCCCCEEEEEEeEEECcEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeccCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCC-CCceEEeeCCeeeEEEEEEEEEe
Q 015838 298 SVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWP-DGWTAVTADGKRSAQFEHTLLVT 376 (399)
Q Consensus 298 ~~~~~~~GHGIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wp-D~wt~~t~~g~~~~~~EdtvlVT 376 (399)
....+++|||||+.+||.|.++.+ ++++..+|++||||+|||+++.+.+....++ |+|++.+.||..++|+||||+||
T Consensus 201 ~~~~~~~GHgIGl~~hE~P~i~~~-~~~~~~~L~~GMV~~iEP~i~~~~~~g~~~~~~~~~~~~~~g~~~~~~edtv~VT 279 (291)
T PRK12318 201 SVVDQFVGHGVGIKFHENPYVPHH-RNSSKIPLAPGMIFTIEPMINVGKKEGVIDPINHWEARTCDNQPSAQWEHTILIT 279 (291)
T ss_pred ccCCCcccCCcCccccCCCcccCc-CCCCCCEeCCCCEEEECCEEEcCCCceEEecCCCcEEEecCCCeeeeeeeEEEEc
Confidence 977789999999999999999865 3445679999999999999998655444444 89999999999999999999999
Q ss_pred CCCeeeccCC
Q 015838 377 ETGVEVLTAR 386 (399)
Q Consensus 377 e~G~EiLT~~ 386 (399)
++|+|+||..
T Consensus 280 e~G~e~LT~~ 289 (291)
T PRK12318 280 ETGYEILTLL 289 (291)
T ss_pred CCcceeCCCC
Confidence 9999999974
No 9
>PRK05716 methionine aminopeptidase; Validated
Probab=100.00 E-value=1.1e-53 Score=407.51 Aligned_cols=249 Identities=53% Similarity=0.860 Sum_probs=236.1
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCC
Q 015838 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP 218 (399)
Q Consensus 139 ~r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p 218 (399)
+..|||++||+.||+|++++.++++.+.+.++||+||.||++.+.+.+.++|+.+.+.++..||.++++|.|+..+|+.|
T Consensus 2 ~~~iKs~~Ei~~~r~A~~i~~~~~~~a~~~i~pG~se~ela~~~~~~~~~~G~~~~~~~~~~~~~~~~~g~~~~~~h~~~ 81 (252)
T PRK05716 2 AITIKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGYHGFPKSICTSVNEVVCHGIP 81 (252)
T ss_pred ceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHCCCEecccCCCCCCcCeEecccceeecCCC
Confidence 45899999999999999999999999999999999999999999999999999877666778888999999999999999
Q ss_pred CCCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCc
Q 015838 219 DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFS 298 (399)
Q Consensus 219 ~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~ 298 (399)
++++|++||+|.+|+++.++||++|++|||++|++++++++++++++++++++++++|||++++||+++++++++++|+.
T Consensus 82 ~~~~l~~Gd~v~id~g~~~~gY~~d~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~~~~~~~~~g~~ 161 (252)
T PRK05716 82 SDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFS 161 (252)
T ss_pred CCcccCCCCEEEEEEEEEECCEEEEeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccceeeccCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeCC
Q 015838 299 VVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTET 378 (399)
Q Consensus 299 ~~~~~~GHGIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe~ 378 (399)
..++++|||||+.+||.|.++.|...+++.+|+|||||+|||+++.+.+..+.|+|+|++.+.+|.+++++||||+||++
T Consensus 162 ~~~~~~GHgiG~~~~e~p~~~~~~~~~~~~~le~Gmv~~vEp~i~~~~~~~~~~~~~~~~~~~~g~~g~~~ed~v~Vt~~ 241 (252)
T PRK05716 162 VVREYCGHGIGRKFHEEPQIPHYGAPGDGPVLKEGMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTED 241 (252)
T ss_pred eecCccccccCCccCCCCccCcCCCCCCCCEecCCCEEEEccEEEcCCCceEEcCCCCEEEccCCCcEEeeeeEEEEcCC
Confidence 87889999999999999998876556677899999999999999998888889999999999999999999999999999
Q ss_pred CeeeccCCC
Q 015838 379 GVEVLTARL 387 (399)
Q Consensus 379 G~EiLT~~~ 387 (399)
|+|+||..+
T Consensus 242 G~e~Lt~~~ 250 (252)
T PRK05716 242 GPEILTLRP 250 (252)
T ss_pred ccEEeeCCC
Confidence 999999764
No 10
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=100.00 E-value=7.3e-50 Score=378.10 Aligned_cols=238 Identities=55% Similarity=0.890 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCCCCcCCCCC
Q 015838 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (399)
Q Consensus 148 Ie~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GD 227 (399)
|+.||+|+++++++++++.+.++||+||.||++.+.+.+.++|+.+..+++..||..+++|.|+..+|+.|++++|++||
T Consensus 1 I~~lr~A~~i~~~~~~~~~~~~~pG~tE~ev~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~l~~Gd 80 (238)
T cd01086 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICTSVNEVVCHGIPDDRVLKDGD 80 (238)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCcceecCCCCceeCCCCCCcccCCCC
Confidence 68999999999999999999999999999999999999999999988778888998899999999999999999999999
Q ss_pred eEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCcccccceeec
Q 015838 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHG 307 (399)
Q Consensus 228 iV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~~~~~~GHG 307 (399)
+|.+|+++.++||++|++|||++|+++++++++++.+.++++++++++|||++++||++++++++++.|+....+++|||
T Consensus 81 ~v~id~g~~~~GY~ad~~RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~G~~~~~~~~GHg 160 (238)
T cd01086 81 IVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGHG 160 (238)
T ss_pred EEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcceecCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777889999
Q ss_pred cCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeCCCeeeccC
Q 015838 308 IGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTA 385 (399)
Q Consensus 308 IG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe~G~EiLT~ 385 (399)
||+.+||.|.+..+...+++.+|++||||+|||+++.+.+....|+++|+..+.+|.+++|+||||+||++|+|+||.
T Consensus 161 iG~~~~e~p~~~~~~~~~~~~~le~Gmv~~iep~i~~~~~~~~~~~~~~~~~~~~g~~g~~~edtv~Vte~G~e~Lt~ 238 (238)
T cd01086 161 IGRKFHEEPQIPNYGRPGTGPKLKPGMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITEDGPEILTL 238 (238)
T ss_pred CCCccccCCCcCCccCCCCCCEecCCCEEEEeeEEECCCCceEECCCCCEEEcCCCCEEEeeeeEEEEcCCcceeCCC
Confidence 999999999887555556778999999999999999988888899999999999999999999999999999999984
No 11
>PRK09795 aminopeptidase; Provisional
Probab=100.00 E-value=1e-48 Score=392.49 Aligned_cols=225 Identities=26% Similarity=0.421 Sum_probs=207.7
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCcccc
Q 015838 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215 (399)
Q Consensus 136 ~~~~r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~H 215 (399)
...+|+|||++||+.||+|++|++++++.+.+.++||+||.||++.++..+.++|+.+. +|+++|++|.|+..+|
T Consensus 121 ~~~lR~iKs~~Ei~~~r~a~~i~~~~~~~~~~~i~~G~tE~e~~~~~~~~~~~~G~~~~-----~f~~iv~sG~~~~~ph 195 (361)
T PRK09795 121 PDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKA-----SFDTIVASGWRGALPH 195 (361)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHCCCCcC-----CCCeEEEEeccccccC
Confidence 35689999999999999999999999999999999999999999999999999998753 5888999999999999
Q ss_pred CCCCCCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCC--CCHH---HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 015838 216 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN--ADEA---SRQLVQCTYECLEKAISIVKPGVRFREIGEVINR 290 (399)
Q Consensus 216 g~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~--~~~~---~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~ 290 (399)
+.|++++|++||+|++|+|+.|+||++|++|||++|. ++++ ++++|+++.++++++++++|||++++||++++++
T Consensus 196 ~~~~~~~l~~gd~v~~d~g~~~~gY~sd~tRt~~~g~~~~~~~~~~~~~~~~~v~~a~~~~~~~~rpG~~~~~v~~~~~~ 275 (361)
T PRK09795 196 GKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARR 275 (361)
T ss_pred CCCCCceecCCCEEEEEeccccCCEeecceEEEEeCCcCCchhHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999963 3433 7899999999999999999999999999999999
Q ss_pred HHHHcCCc-ccccceeeccCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEE
Q 015838 291 HATMSGFS-VVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQF 369 (399)
Q Consensus 291 ~~~~~G~~-~~~~~~GHGIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~ 369 (399)
++++.||. ...+++|||||+++||.|.+. .+++.+|+|||||+|||++|. ++.+|+|+
T Consensus 276 ~~~~~g~~~~~~h~~GHgiGl~~he~p~i~----~~~~~~l~~gmv~~iEpgiy~-----------------~~~~gvri 334 (361)
T PRK09795 276 VITEAGYGDYFGHNTGHAIGIEVHEDPRFS----PRDTTTLQPGMLLTVEPGIYL-----------------PGQGGVRI 334 (361)
T ss_pred HHHHcCCCccCCCCCCccCCccccCCCCcC----CCCCCCcCCCCEEEECCEEEe-----------------CCCCEEEE
Confidence 99999997 456789999999999999885 345689999999999999986 36678999
Q ss_pred EEEEEEeCCCeeeccCC
Q 015838 370 EHTLLVTETGVEVLTAR 386 (399)
Q Consensus 370 EdtvlVTe~G~EiLT~~ 386 (399)
||||+||++|+|+||..
T Consensus 335 Ed~v~vt~~G~e~Lt~~ 351 (361)
T PRK09795 335 EDVVLVTPQGAEVLYAM 351 (361)
T ss_pred eeEEEECCCCcEeCcCC
Confidence 99999999999999975
No 12
>PRK10879 proline aminopeptidase P II; Provisional
Probab=100.00 E-value=7.5e-48 Score=394.69 Aligned_cols=243 Identities=23% Similarity=0.346 Sum_probs=213.2
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCcccc
Q 015838 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215 (399)
Q Consensus 136 ~~~~r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~H 215 (399)
+..+|+|||++||+.||+|++++..++.++++.++||+||.||++.+...+.++|+.. ..|+.++++|.|..++|
T Consensus 167 l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~~~pG~tE~ei~a~~~~~~~~~G~~~-----~~~~~iv~~G~na~~~H 241 (438)
T PRK10879 167 VHEMRLFKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARY-----PSYNTIVGSGENGCILH 241 (438)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHCCCCC-----CCCCcEEEEcCcccccc
Confidence 3568999999999999999999999999999999999999999999999999999753 24788999999999999
Q ss_pred CCCCCCcCCCCCeEEEEEeeEeCCEEeceeeEEEe-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-
Q 015838 216 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT- 293 (399)
Q Consensus 216 g~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~v-G~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~- 293 (399)
+.|++++|++||+|++|+|+.++||++|++|||+| |+++++++++|++++++++++++++|||+++++|++++.+++.
T Consensus 242 ~~~~~~~l~~GDlVliD~G~~~~GY~sDitRT~~v~G~~s~~q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~~ 321 (438)
T PRK10879 242 YTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVS 321 (438)
T ss_pred CCCCccccCCCCEEEEEeCeEECCEEEEeEEEEEECCcCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 8999999999999999999999999999999999999886653
Q ss_pred ---H--------------cCCc-ccccceeeccCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCC
Q 015838 294 ---M--------------SGFS-VVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDG 355 (399)
Q Consensus 294 ---~--------------~G~~-~~~~~~GHGIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~ 355 (399)
+ .++. ...|.+||+||+++|+.|.+. .+...+|+|||||||||++|... ...||+.
T Consensus 322 ~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~iGldvHd~~~~~----~~~~~~L~~GmV~tvEPgiY~~~--~~~~~~~ 395 (438)
T PRK10879 322 GLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLGLDVHDVGVYG----QDRSRILEPGMVLTVEPGLYIAP--DADVPEQ 395 (438)
T ss_pred HHHHhCCcCCCHHHHHHhccCccccCCCCccccCcCcCcCCCcC----CCCCCcCCCCCEEEECCEEEECC--CcCcccc
Confidence 2 3332 345679999999999988653 23567999999999999999742 1223433
Q ss_pred ceEEeeCCeeeEEEEEEEEEeCCCeeeccCCCCCCCCccc
Q 015838 356 WTAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSPKVYP 395 (399)
Q Consensus 356 wt~~t~~g~~~~~~EdtvlVTe~G~EiLT~~~~~~~~~~~ 395 (399)
| ...|+|+||||+||++|+|+||...|+++++++
T Consensus 396 ~------~~~GiRiED~VlVT~~G~e~LT~~~pk~~~~iE 429 (438)
T PRK10879 396 Y------RGIGIRIEDDIVITETGNENLTASVVKKPDEIE 429 (438)
T ss_pred c------CccEEEeccEEEECCCcCeEcCccCCCCHHHHH
Confidence 2 345899999999999999999999999988664
No 13
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-47 Score=383.22 Aligned_cols=230 Identities=32% Similarity=0.501 Sum_probs=213.1
Q ss_pred CcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccc
Q 015838 135 DLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVIC 214 (399)
Q Consensus 135 ~~~~~r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~ 214 (399)
.+..+|+|||+.||+.||+|++++..++..+++.++||+||.||.+.++..+.+.|+... .|+++|++|.|+..+
T Consensus 147 ~i~~lR~iKs~~EI~~ir~A~~i~~~a~~~~~~~~~~g~tE~ev~a~l~~~~~~~G~~~~-----sf~~iv~~G~n~a~p 221 (384)
T COG0006 147 LVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGP-----SFDTIVASGENAALP 221 (384)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCcc-----CcCcEEeccccccCc
Confidence 346789999999999999999999999999999999999999999999999999996542 488999999999999
Q ss_pred cCCCCCCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 015838 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (399)
Q Consensus 215 Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~ 294 (399)
|+.|+++.+++||+|+||+|+.|+||++|+||||++|+++++++++|+.++++++++++++|||++++||+.++++++.+
T Consensus 222 H~~~~~~~~~~gd~vliD~G~~~~gY~sDiTRT~~~G~~~~~~~~iy~~V~~aq~aa~~~~rpG~~~~~vd~~ar~~i~~ 301 (384)
T COG0006 222 HYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEK 301 (384)
T ss_pred CCCCCcccccCCCEEEEEeeeEECCccccceeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-cccceeeccC--CccccCCC-CCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEE
Q 015838 295 SGFSV-VKSYCGHGIG--ELFHCAPN-IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFE 370 (399)
Q Consensus 295 ~G~~~-~~~~~GHGIG--~~~he~P~-i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~E 370 (399)
.|+.. ..+.+|||+| +++||.|. +. .+...+|+|||||++||++|. +|.+|+|+|
T Consensus 302 ~g~~~~~~h~~GHgvG~~l~vhE~p~~~~----~~~~~~L~~GMv~t~Epg~y~-----------------~g~~GirIE 360 (384)
T COG0006 302 AGYGLYFLHGTGHGVGFVLDVHEHPQYLS----PGSDTTLEPGMVFSIEPGIYI-----------------PGGGGVRIE 360 (384)
T ss_pred cCCcccccCCccccCCCCcccCcCccccC----CCCCccccCCcEEEecccccc-----------------CCCceEEEE
Confidence 88763 3455999999 99999995 54 456789999999999998776 488999999
Q ss_pred EEEEEeCCCeeeccCCCCCCC
Q 015838 371 HTLLVTETGVEVLTARLPSSP 391 (399)
Q Consensus 371 dtvlVTe~G~EiLT~~~~~~~ 391 (399)
|+|+||++|+|+|| ..|+..
T Consensus 361 d~vlVte~G~e~LT-~~~~~~ 380 (384)
T COG0006 361 DTVLVTEDGFEVLT-RVPKEL 380 (384)
T ss_pred EEEEEcCCCceecc-cCCcce
Confidence 99999999999999 767654
No 14
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=100.00 E-value=2.6e-46 Score=352.51 Aligned_cols=225 Identities=23% Similarity=0.274 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCC-CCCCCCCceeeeCCCCccccCCCCCCcCCCC
Q 015838 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNYHFFPKSCCTSVNEVICHGIPDSRKLEDG 226 (399)
Q Consensus 148 Ie~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~-l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~G 226 (399)
|++||+|++|++++++++.+.++||+||.||++.+++++.+.|+...+ ..+..+.+++++|.|+..+|+.|++++|++|
T Consensus 1 I~~ir~Aa~i~d~~~~~~~~~i~pG~tE~ei~a~~~~~~~~~ga~~~~~~~~~~~~~~v~~G~~~~~~H~~~~~r~l~~G 80 (228)
T cd01090 1 IALIRHGARIADIGGAAVVEAIREGVPEYEVALAGTQAMVREIAKTFPEVELMDTWTWFQSGINTDGAHNPVTNRKVQRG 80 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCcccccCcceEEEeeccccccCCCCCCcccCCC
Confidence 689999999999999999999999999999999999999999875322 1223333578999999999999999999999
Q ss_pred CeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCccc-cccee
Q 015838 227 DIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV-KSYCG 305 (399)
Q Consensus 227 DiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~~-~~~~G 305 (399)
|+|++|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||+++++++++++||... .+.+|
T Consensus 81 D~v~~d~g~~~~GY~ad~~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~~G~~~~~~~~~G 160 (228)
T cd01090 81 DILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHDLLRYRTFGYG 160 (228)
T ss_pred CEEEEEEeEEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999853 45689
Q ss_pred eccCCccccCCCC-CCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeCCCeeecc
Q 015838 306 HGIGELFHCAPNI-PHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLT 384 (399)
Q Consensus 306 HGIG~~~he~P~i-~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe~G~EiLT 384 (399)
||||+.+||.|.- ......+++.+|+|||||+|||+++... + .+|.+++|+||||+||++|+|+||
T Consensus 161 HgiGl~~he~~~~~g~~~~~~~~~~Le~GMV~~iEP~i~~~~--------~-----~~g~gG~ried~v~Vt~~G~e~Lt 227 (228)
T cd01090 161 HSFGVLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIMLPE--------G-----QPGAGGYREHDILVINENGAENIT 227 (228)
T ss_pred cccccccccCCCccccccCCCCCCccCCCCEEEECCEEeecc--------c-----CCCCcEEEeeeEEEECCCccccCc
Confidence 9999999998631 1011234568999999999999998621 1 136789999999999999999998
Q ss_pred C
Q 015838 385 A 385 (399)
Q Consensus 385 ~ 385 (399)
.
T Consensus 228 ~ 228 (228)
T cd01090 228 G 228 (228)
T ss_pred C
Confidence 4
No 15
>PRK15173 peptidase; Provisional
Probab=100.00 E-value=3.8e-46 Score=368.39 Aligned_cols=228 Identities=24% Similarity=0.382 Sum_probs=203.2
Q ss_pred CcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccc
Q 015838 135 DLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVIC 214 (399)
Q Consensus 135 ~~~~~r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~ 214 (399)
.+..+|+|||++||+.||+|++++.++++++.+.++||+||.||++.+..++.+.|... +..|+ ++.+|.+ ..+
T Consensus 88 ~i~~lR~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~~G~tE~el~a~~~~~~~~~g~~~----~~~~~-~i~~G~~-~~~ 161 (323)
T PRK15173 88 IFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETH----FSRFH-LISVGAD-FSP 161 (323)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCC----CCCCc-EEEECCC-Ccc
Confidence 34678999999999999999999999999999999999999999999988888776532 11233 5666766 468
Q ss_pred cCCCCCCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 015838 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (399)
Q Consensus 215 Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~ 294 (399)
|+.|++++|++||+|++|+++.|+||++|++|||++|+++++++++|++++++++++++++|||++++||++++++++++
T Consensus 162 h~~~~~~~l~~Gd~V~iD~g~~~~GY~aDitRT~~vG~p~~~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~~~ 241 (323)
T PRK15173 162 KLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKK 241 (323)
T ss_pred CCCCCCCccCCCCEEEEEeCccCCCEeeeeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc-ccccceeeccCC--ccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEE
Q 015838 295 SGFS-VVKSYCGHGIGE--LFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEH 371 (399)
Q Consensus 295 ~G~~-~~~~~~GHGIG~--~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~Ed 371 (399)
.|+. ..++++|||||+ .+||.|.+.. +++.+|++||||+|||++|. .+.+|+++||
T Consensus 242 ~G~~~~~~~~~GHGiG~~lg~~E~P~i~~----~~~~~Le~GMV~tiEPgiy~-----------------~g~ggvriED 300 (323)
T PRK15173 242 SGLPNYNRGHLGHGNGVFLGLEESPFVST----HATESFTSGMVLSLETPYYG-----------------YNLGSIMIED 300 (323)
T ss_pred cCCccccCCCCCCcCCCCCCcCCCCCCCC----CCCCccCCCCEEEECCEEEc-----------------CCCcEEEEee
Confidence 9997 566789999996 8899998863 35679999999999999886 3567899999
Q ss_pred EEEEeCCCeeeccCCCCCC
Q 015838 372 TLLVTETGVEVLTARLPSS 390 (399)
Q Consensus 372 tvlVTe~G~EiLT~~~~~~ 390 (399)
||+||++|+|+||. .|++
T Consensus 301 tvlVTe~G~e~LT~-~p~~ 318 (323)
T PRK15173 301 MILINKEGIEFLSK-LPRD 318 (323)
T ss_pred EEEEcCCcceeCCC-CCcc
Confidence 99999999999996 3443
No 16
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=100.00 E-value=4.7e-46 Score=353.46 Aligned_cols=223 Identities=27% Similarity=0.328 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCCCCcCCCCC
Q 015838 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (399)
Q Consensus 148 Ie~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GD 227 (399)
|++||+|+++++++++++.+.++||+||.||++.++..+.++|+.+ .|+.++++|.|...+|+.|++++|++||
T Consensus 1 i~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~G~~~------~~~~~v~~g~~~~~~H~~~~~~~l~~Gd 74 (243)
T cd01087 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARL------AYSYIVAAGSNAAILHYVHNDQPLKDGD 74 (243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCCc------CCCCeEEECCCccccCCCcCCCcCCCCC
Confidence 6899999999999999999999999999999999999999999873 3778899999999999999999999999
Q ss_pred eEEEEEeeEeCCEEeceeeEEEe-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCC---------
Q 015838 228 IVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF--------- 297 (399)
Q Consensus 228 iV~iD~g~~~~GY~~D~~RT~~v-G~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~--------- 297 (399)
+|++|+++.++||++|++|||++ |++++++++++++++++++++++++|||++++||++++++++++.|+
T Consensus 75 ~v~vD~g~~~~GY~ad~~Rt~~vgg~~~~~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~~~~~~g~~~~~~ 154 (243)
T cd01087 75 LVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDV 154 (243)
T ss_pred EEEEEeCceECCEeeeeeEEEEeCCcCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcCcccCch
Confidence 99999999999999999999999 69999999999999999999999999999999999999999987642
Q ss_pred ----------cccccceeeccCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeE
Q 015838 298 ----------SVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSA 367 (399)
Q Consensus 298 ----------~~~~~~~GHGIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~ 367 (399)
....+.+|||||+.+||.|.+. ...+++.+|++||||+|||++|.+.+.... ++. .+.+++
T Consensus 155 ~~~~~~~~~~~~~~h~~GhgiGl~~~e~p~~~--~~~~~~~~l~~GMv~~iEp~iy~~~~~~~~-~~~------~~~~g~ 225 (243)
T cd01087 155 DEIVESGAYAKFFPHGLGHYLGLDVHDVGGYL--RYLRRARPLEPGMVITIEPGIYFIPDLLDV-PEY------FRGGGI 225 (243)
T ss_pred HhhhhhhhhhhhcCCCCccccCcccccCcccc--ccCCCCCCCCCCCEEEECCEEEeCCccccc-ccc------cceeEE
Confidence 2445679999999999999762 113466899999999999999874321111 222 257899
Q ss_pred EEEEEEEEeCCCeeeccC
Q 015838 368 QFEHTLLVTETGVEVLTA 385 (399)
Q Consensus 368 ~~EdtvlVTe~G~EiLT~ 385 (399)
|+||||+||++|+|+||+
T Consensus 226 ~ied~v~Vt~~G~e~Lt~ 243 (243)
T cd01087 226 RIEDDVLVTEDGPENLTR 243 (243)
T ss_pred EeeeEEEEcCCcceeCcC
Confidence 999999999999999984
No 17
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=100.00 E-value=1.4e-45 Score=373.48 Aligned_cols=228 Identities=22% Similarity=0.275 Sum_probs=199.3
Q ss_pred CcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH----cCCCCCCCCCCCCCceeeeCCC
Q 015838 135 DLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATIT----AGGYPSPLNYHFFPKSCCTSVN 210 (399)
Q Consensus 135 ~~~~~r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~----~G~~ps~l~~~~fp~~v~~g~n 210 (399)
.+..+|+|||++||++||+|++|++++++++.+.++||+||.||++.+...... .|+. +..|.+++.+|.|
T Consensus 151 ~~~~lR~iKs~~EI~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~~~~~g~~-----~~~~~~iv~sG~~ 225 (391)
T TIGR02993 151 LVNWQRAVKSETEISYMRVAARIVEKMHQRIFERIEPGMRKCDLVADIYDAGIRGVDGFGGD-----YPAIVPLLPSGAD 225 (391)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhhcccCcCCC-----cCCcccccccCcc
Confidence 346789999999999999999999999999999999999999999988655432 1221 1235557789999
Q ss_pred CccccCCCCCCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 015838 211 EVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINR 290 (399)
Q Consensus 211 ~~~~Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~ 290 (399)
+..+|+.|++++|++||+|++|+++.|+||++|++|||++|+++++++++|+.+.++++++++++|||++++||++++++
T Consensus 226 ~a~pH~~~~~~~l~~gd~v~iD~g~~~~GY~sD~tRT~~vG~p~~~~~~~~~~~~~a~~~~i~~ikpG~~~~dv~~~~~~ 305 (391)
T TIGR02993 226 ASAPHLTWDDSPMKVGEGTFFEIAGCYKRYHCPLSRTVFLGKPTQAFLDAEKAVLEGMEAGLEAAKPGNTCEDIANAFFA 305 (391)
T ss_pred ccCCCCCCCCCcccCCCEEEEEeeeecccCccceeEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcccccceeeccCCccccC-----CCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCee
Q 015838 291 HATMSGFSVVKSYCGHGIGELFHCA-----PNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKR 365 (399)
Q Consensus 291 ~~~~~G~~~~~~~~GHGIG~~~he~-----P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~ 365 (399)
+++++||.. .+++|||||+.+|+. |.+. .+++.+|++||||+|||++|. ++ .
T Consensus 306 ~~~~~G~~~-~h~~GhgiGl~~~~~~~e~~~~l~----~~~~~~L~~GMv~tvEpgiy~-----------------~~-~ 362 (391)
T TIGR02993 306 VLKKYGIHK-DSRTGYPIGLSYPPDWGERTMSLR----PGDNTVLKPGMTFHFMTGLWM-----------------ED-W 362 (391)
T ss_pred HHHHcCCcc-CCCceeeeccCcCCCCCCcccccc----CCCCceecCCCEEEEcceeEe-----------------CC-C
Confidence 999999975 467999999998742 3333 356689999999999999886 23 3
Q ss_pred eEEEEEEEEEeCCCeeeccCCCCCCC
Q 015838 366 SAQFEHTLLVTETGVEVLTARLPSSP 391 (399)
Q Consensus 366 ~~~~EdtvlVTe~G~EiLT~~~~~~~ 391 (399)
|+++||||+||++|+|+||.. |++.
T Consensus 363 Gvried~v~VT~~G~e~Lt~~-p~~l 387 (391)
T TIGR02993 363 GLEITESILITETGVECLSSV-PRKL 387 (391)
T ss_pred CeEEeeEEEECCCcceecccC-Cccc
Confidence 689999999999999999974 5543
No 18
>PRK14575 putative peptidase; Provisional
Probab=100.00 E-value=2.9e-45 Score=372.59 Aligned_cols=227 Identities=24% Similarity=0.380 Sum_probs=204.0
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCcccc
Q 015838 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215 (399)
Q Consensus 136 ~~~~r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~H 215 (399)
+..+|+|||++||+.||+|+++++++++++.+.++||+||.||++.+.+++.+.|.... ..| .++.+|.+ ..+|
T Consensus 172 l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~~----~~~-~~v~~G~~-~~~h 245 (406)
T PRK14575 172 FNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHF----SRF-HLISVGAD-FSPK 245 (406)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCcC----CcC-ceEEECCC-cccC
Confidence 46789999999999999999999999999999999999999999999998888776431 113 35667776 5689
Q ss_pred CCCCCCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHc
Q 015838 216 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMS 295 (399)
Q Consensus 216 g~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~ 295 (399)
+.|++++|++||+|++|+++.++||++|++|||++|+++++++++|++++++++++++++|||++++||++++++++++.
T Consensus 246 ~~~~~~~l~~Gd~v~iD~g~~~~GY~sditRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~a~~~~~~~~ 325 (406)
T PRK14575 246 LIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKS 325 (406)
T ss_pred CCCCCCcCCCCCEEEEEeceEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc-ccccceeeccCC--ccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEE
Q 015838 296 GFS-VVKSYCGHGIGE--LFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHT 372 (399)
Q Consensus 296 G~~-~~~~~~GHGIG~--~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~Edt 372 (399)
||. ..++++|||+|+ .+||.|.+.. +++.+|+|||||+|||++|. .+.+|+++|||
T Consensus 326 G~~~~~~~~~GHGiG~~lg~~e~P~i~~----~~~~~Le~GMv~tiEpgiy~-----------------~g~gGvriEDt 384 (406)
T PRK14575 326 GLPNYNRGHLGHGNGVFLGLEESPFVST----HATESFTSGMVLSLETPYYG-----------------YNLGSIMIEDM 384 (406)
T ss_pred CCccccCCCCCCcccCCCCCccCCCCCC----CCCCCcCCCCEEEECCeeec-----------------CCCcEEEEEeE
Confidence 997 456789999995 8999998863 45679999999999999886 35678999999
Q ss_pred EEEeCCCeeeccCCCCCC
Q 015838 373 LLVTETGVEVLTARLPSS 390 (399)
Q Consensus 373 vlVTe~G~EiLT~~~~~~ 390 (399)
|+||++|+|+||. .|++
T Consensus 385 vlVT~~G~e~LT~-~p~~ 401 (406)
T PRK14575 385 ILINKEGIEFLSK-LPRD 401 (406)
T ss_pred EEEcCCCcccCCC-CCcc
Confidence 9999999999996 4544
No 19
>PRK14576 putative endopeptidase; Provisional
Probab=100.00 E-value=1e-44 Score=368.42 Aligned_cols=228 Identities=23% Similarity=0.343 Sum_probs=205.3
Q ss_pred CcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccc
Q 015838 135 DLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVIC 214 (399)
Q Consensus 135 ~~~~~r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~ 214 (399)
.+..+|+|||++||+.||+|++++++++.++.+.++||+||.||++.++..+.+.|... +..| .++++|.| ..+
T Consensus 170 ~l~~lR~iKs~~EI~~~r~A~~i~~~~~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~----~~~~-~~v~~G~~-~~~ 243 (405)
T PRK14576 170 LFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETN----FSRF-NLISVGDN-FSP 243 (405)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCc----CCCC-CEEEECCc-ccC
Confidence 34678999999999999999999999999999999999999999999999999887531 1123 46788887 568
Q ss_pred cCCCCCCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 015838 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (399)
Q Consensus 215 Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~ 294 (399)
|+.|++++|++||+|++|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||++++++++++
T Consensus 244 h~~~~~~~l~~Gd~v~~d~g~~~~GY~sd~tRT~~~G~p~~~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~a~~~~~~~ 323 (405)
T PRK14576 244 KIIADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKT 323 (405)
T ss_pred CCCCCCcccCCCCEEEEEeceeECCEEeeeeEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc-ccccceeeccC--CccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEE
Q 015838 295 SGFS-VVKSYCGHGIG--ELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEH 371 (399)
Q Consensus 295 ~G~~-~~~~~~GHGIG--~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~Ed 371 (399)
.||. ..++++|||+| +.+||.|.+. .+++.+|++||||+|||+++. .|.+|+++||
T Consensus 324 ~G~~~~~~~~~GHgiG~~l~~~e~P~i~----~~~~~~Le~GMv~~vEp~~y~-----------------~g~ggvriED 382 (405)
T PRK14576 324 SGLPHYNRGHLGHGDGVFLGLEEVPFVS----TQATETFCPGMVLSLETPYYG-----------------IGVGSIMLED 382 (405)
T ss_pred cCCccccCCCCCCCCCCCCCcCcCCCcC----CCCCCccCCCCEEEECCceee-----------------cCCCEEEEee
Confidence 9997 45678999999 7899999875 245679999999999998775 4778999999
Q ss_pred EEEEeCCCeeeccCCCCCC
Q 015838 372 TLLVTETGVEVLTARLPSS 390 (399)
Q Consensus 372 tvlVTe~G~EiLT~~~~~~ 390 (399)
||+||++|+|+||.. |++
T Consensus 383 tvlVTe~G~e~LT~~-p~~ 400 (405)
T PRK14576 383 MILITDSGFEFLSKL-DRD 400 (405)
T ss_pred EEEECCCccccCCCC-Ccc
Confidence 999999999999985 443
No 20
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=100.00 E-value=5.2e-43 Score=352.66 Aligned_cols=245 Identities=20% Similarity=0.280 Sum_probs=216.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCC----CCCCCceeeeCCCCccccC
Q 015838 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLN----YHFFPKSCCTSVNEVICHG 216 (399)
Q Consensus 141 ~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~----~~~fp~~v~~g~n~~~~Hg 216 (399)
.+|+++||+.||+|++|++++++.+.+.++||+|+.||++.+++.+.+.++. .+.+ +.+|+..+|+|+|+.++|+
T Consensus 12 ~i~~~~eI~~~r~Aa~Ia~~~l~~~~~~ikpG~t~~el~~~~~~~i~~~~a~-~~~~~~~~~~g~afpt~vSvN~~v~H~ 90 (389)
T TIGR00495 12 SLSNPEVVTKYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETAK-IFKKEKEMEKGIAFPTCISVNNCVGHF 90 (389)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhh-hhcccccccCCCCCCeEEecCCeeeCC
Confidence 6899999999999999999999999999999999999999999999887653 2211 2333333677899999999
Q ss_pred CC--C--CCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCC-----CCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 015838 217 IP--D--SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN-----ADEASRQLVQCTYECLEKAISIVKPGVRFREIGEV 287 (399)
Q Consensus 217 ~p--~--~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~-----~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~a 287 (399)
+| + +++|++||+|+||+|++++||++|++|||+||+ ++++++++++++++|++++|+.+|||++.+||+++
T Consensus 91 ~P~~~d~~~~Lk~GDvVkIDlG~~idGY~aD~arTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~~~dI~~a 170 (389)
T TIGR00495 91 SPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTNTQVTEA 170 (389)
T ss_pred CCCCCCCCcCcCCCCEEEEEEEEEECCEEEEEEEEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 99 2 489999999999999999999999999999995 56789999999999999999999999999999999
Q ss_pred HHHHHHHcCCcccccceeeccCCcccc-CCCC-CCCCC----CCCCceecCCcEEEEccccccCCcccccCCCCceE---
Q 015838 288 INRHATMSGFSVVKSYCGHGIGELFHC-APNI-PHYSR----NKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTA--- 358 (399)
Q Consensus 288 i~~~~~~~G~~~~~~~~GHGIG~~~he-~P~i-~~~~~----~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~--- 358 (399)
++++++++||.++++++|||||..+|+ .|.| +++.. ......|++||||+|||+++.|......++|.||+
T Consensus 171 i~~v~~~~G~~~v~~~~gH~igr~~~~g~~~Ii~~~~~~~~~~~~~~~le~gev~aIEp~vs~G~g~v~~~~~~~tiy~~ 250 (389)
T TIGR00495 171 INKVAHSYGCTPVEGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTAEFEENEVYAVDILVSTGEGKAKDADQRTTIYKR 250 (389)
T ss_pred HHHHHHHcCCeecCCceeecccceeccCCCeeeecCCccccCCCCCCEecCCCEEEEeeeecCCCceEEECCCeeEEEEE
Confidence 999999999999999999999999998 7875 55532 12457999999999999999999988888887875
Q ss_pred -----------------------------------------------------------EeeCCeeeEEEEEEEEEeCCC
Q 015838 359 -----------------------------------------------------------VTADGKRSAQFEHTLLVTETG 379 (399)
Q Consensus 359 -----------------------------------------------------------~t~~g~~~~~~EdtvlVTe~G 379 (399)
..++|..-+|||+||+|+++|
T Consensus 251 ~~~~~y~lk~~~sr~~l~ei~~~f~~~PF~~R~l~~~~~~~~gl~e~~~~~~l~~ypvl~e~~g~~Vaqf~~Tv~v~~~g 330 (389)
T TIGR00495 251 DPSKTYGLKMKASRAFFSEIERRFDAMPFTLRNFEDEKRARMGLVECVKHELLQPYPVLYEKEGEFVAQFKFTVLLMPNG 330 (389)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHhCCCCCcchHHhcchhhHHHHHHHHHHCCCcccCCceEeeCCCeEEEEEEEEEECCCC
Confidence 345688899999999999999
Q ss_pred eeeccCC
Q 015838 380 VEVLTAR 386 (399)
Q Consensus 380 ~EiLT~~ 386 (399)
+++||..
T Consensus 331 ~~~~t~~ 337 (389)
T TIGR00495 331 PMRITSG 337 (389)
T ss_pred cEEeCCC
Confidence 9999985
No 21
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=100.00 E-value=9.8e-43 Score=321.73 Aligned_cols=207 Identities=31% Similarity=0.505 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCCCCcCCCCC
Q 015838 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (399)
Q Consensus 148 Ie~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GD 227 (399)
|++||+|++++++++.++.+.++||+||.||++.+++.+.++|+.+ .+||+++++|.|...+|+.|++++|++||
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~~-----~~~~~~v~~g~~~~~~h~~~~~~~l~~gd 75 (208)
T cd01092 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEG-----PSFDTIVASGPNSALPHGVPSDRKIEEGD 75 (208)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC-----CCCCcEEEECccccccCCCCCCcCcCCCC
Confidence 6899999999999999999999999999999999999999999864 35889999999999999999999999999
Q ss_pred eEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCcc-cccceee
Q 015838 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV-VKSYCGH 306 (399)
Q Consensus 228 iV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~-~~~~~GH 306 (399)
+|++|+++.++||++|++|||++|+++++++++++++.++++.+++.+|||++++||+++++++++++|+.. ..+.+||
T Consensus 76 ~v~id~g~~~~gy~~d~~RT~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~~~g~~~~~~~~~Gh 155 (208)
T cd01092 76 LVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGEYFIHRTGH 155 (208)
T ss_pred EEEEEeeeeECCEeccceeEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCccccCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999863 4566999
Q ss_pred ccCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeCCCe
Q 015838 307 GIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGV 380 (399)
Q Consensus 307 GIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe~G~ 380 (399)
|||+.+||.|.+. .+++.+|++||||+|||+++. ++.+++++||||+||++|+
T Consensus 156 ~iG~~~~e~p~i~----~~~~~~l~~gmv~~iep~~~~-----------------~~~~g~~~ed~v~vt~~g~ 208 (208)
T cd01092 156 GVGLEVHEAPYIS----PGSDDVLEEGMVFTIEPGIYI-----------------PGKGGVRIEDDVLVTEDGC 208 (208)
T ss_pred ccCcccCcCCCcC----CCCCCCcCCCCEEEECCeEEe-----------------cCCCEEEeeeEEEECCCCC
Confidence 9999999999875 346689999999999998876 3667899999999999984
No 22
>PRK13607 proline dipeptidase; Provisional
Probab=100.00 E-value=5.7e-43 Score=358.42 Aligned_cols=244 Identities=20% Similarity=0.199 Sum_probs=196.3
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccC
Q 015838 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG 216 (399)
Q Consensus 137 ~~~r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg 216 (399)
..+|+|||++||+.||+|++++.++++++++.++||+||.||++.+.... ..++. ...|+.++++|.|+.++|+
T Consensus 156 ~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~i~pG~tE~ei~~~~~~~~-~~~~~-----~~~y~~iva~G~naa~~H~ 229 (443)
T PRK13607 156 HYHRAYKTDYELACMREAQKIAVAGHRAAKEAFRAGMSEFDINLAYLTAT-GQRDN-----DVPYGNIVALNEHAAVLHY 229 (443)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHh-CCCCc-----CCCCCcEEEecCcceEecC
Confidence 56899999999999999999999999999999999999999998654332 22221 2358889999999999999
Q ss_pred CCCCC-cCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH---
Q 015838 217 IPDSR-KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA--- 292 (399)
Q Consensus 217 ~p~~r-~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~--- 292 (399)
.|+++ ++++||+|++|+|+.++||++|++|||+ |+++++++++|+++.+|++++++++|||++++||+.++.+++
T Consensus 230 ~~~~~~~~~~Gd~vliD~Ga~~~GY~sDiTRTf~-g~~~~~~~~ly~~v~~aq~aai~~ikPG~~~~dv~~aa~~~i~~~ 308 (443)
T PRK13607 230 TKLDHQAPAEMRSFLIDAGAEYNGYAADITRTYA-AKEDNDFAALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKL 308 (443)
T ss_pred CccCCCCCCCCCEEEEEeeEEECCEEecceEEEe-cCCCHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 99874 6899999999999999999999999999 888999999999999999999999999999999999988665
Q ss_pred -HHcCCc----------------ccccceeeccCCccccCCCCCCC------------CCCCCCceecCCcEEEEccccc
Q 015838 293 -TMSGFS----------------VVKSYCGHGIGELFHCAPNIPHY------------SRNKAVGVMKVGQTFTIEPMIN 343 (399)
Q Consensus 293 -~~~G~~----------------~~~~~~GHGIG~~~he~P~i~~~------------~~~~~~~~l~~GmvftIEP~i~ 343 (399)
.+.|+. ...|.+||+||+++||.+.+..+ ..-+...+|+|||||||||++|
T Consensus 309 L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iGldvHd~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~GmV~TvEPGiY 388 (443)
T PRK13607 309 LRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLGLQVHDVAGFMQDDRGTHLAAPEKHPYLRCTRVLEPGMVLTIEPGLY 388 (443)
T ss_pred HHHcCCCCCCCHHHHHhCCCceEecCCCccCccCcccccCCCcccccccccccccccccccccCCcCCCCcEEEECCeee
Confidence 445443 34577999999999998644211 0012347999999999999999
Q ss_pred cCCcccccCCC-------CceEE-eeCCeeeEEEEEEEEEeCCCeeeccCCC
Q 015838 344 AGVWRDRMWPD-------GWTAV-TADGKRSAQFEHTLLVTETGVEVLTARL 387 (399)
Q Consensus 344 ~g~~~~~~wpD-------~wt~~-t~~g~~~~~~EdtvlVTe~G~EiLT~~~ 387 (399)
+.......|.+ +|..+ .-.+.+|+|+||+||||++|+|+||...
T Consensus 389 ~~~~ll~~~~~~~~~~~in~~~i~~~~~~GGvRIED~vlVT~~G~e~Lt~~~ 440 (443)
T PRK13607 389 FIDSLLAPLREGPFSKHFNWQKIDALKPFGGIRIEDNVVVHENGVENMTRDL 440 (443)
T ss_pred eChhhhchhhhhhhhhhccHHHHHhhcCCCEEeecceEEEcCCCCeECChhh
Confidence 84211111111 11111 0125679999999999999999999753
No 23
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=100.00 E-value=2.9e-41 Score=317.30 Aligned_cols=209 Identities=19% Similarity=0.205 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCC---CCcC
Q 015838 149 ERMRETCRIAREVLDAAARMIRPG--VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD---SRKL 223 (399)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pG--vTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~---~r~L 223 (399)
+.||.+..+ .++++.+.+.++|| +||.||++.+++.+...|.++. ..||.+||+|.|+.++|+.|+ +++|
T Consensus 5 ~~~~~~~~~-~~~~~~~~~~i~~G~~~tE~eiaa~~~~~~~~~g~~~~----~~f~~~v~~g~n~~~~H~~p~~~~~r~l 79 (224)
T cd01085 5 AHIRDGVAL-VEFLAWLEQEVPKGETITELSAADKLEEFRRQQKGYVG----LSFDTISGFGPNGAIVHYSPTEESNRKI 79 (224)
T ss_pred HHHHHHHHH-HHHHHHHHHHhccCCCEeHHHHHHHHHHHHHHcCCCcC----CCcceEEEecCccCcCCCCcCcccCccc
Confidence 356666666 59999999999999 9999999999987777665432 358999999999999999998 9999
Q ss_pred CCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHcCCccccc
Q 015838 224 EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIV-KPGVRFREIGEVINRHATMSGFSVVKS 302 (399)
Q Consensus 224 ~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~l-kPG~~~~eI~~ai~~~~~~~G~~~~~~ 302 (399)
++||+|++|+++.++||++|++|||++|+++++++++++.+++++.++++.+ +||+++++|.+++++++.+.|+.. .+
T Consensus 80 ~~GD~V~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~g~~~-~h 158 (224)
T cd01085 80 SPDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDY-GH 158 (224)
T ss_pred CCCCEEEEEeCccCCCcccccEEeecCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCC-CC
Confidence 9999999999999999999999999999999999999999999999999988 599999999999999999999864 46
Q ss_pred ceeeccC--CccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeCCCe
Q 015838 303 YCGHGIG--ELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGV 380 (399)
Q Consensus 303 ~~GHGIG--~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe~G~ 380 (399)
++||||| +.+||.|.++ +. .++..+|+|||||+|||++|. +|.+++++||||+||++|+
T Consensus 159 ~~GHgIG~~l~~hE~P~i~-~~-~~~~~~L~~GmvftiEP~iy~-----------------~g~~gvried~v~Vt~~G~ 219 (224)
T cd01085 159 GTGHGVGSFLNVHEGPQSI-SP-APNNVPLKAGMILSNEPGYYK-----------------EGKYGIRIENLVLVVEAET 219 (224)
T ss_pred CCCCCCCCCCcCCCCCCcC-Cc-CCCCCCcCCCCEEEECCEeEe-----------------CCCeEEEeeEEEEEeeCCc
Confidence 6999999 5889999875 21 345679999999999999986 4678899999999999997
Q ss_pred ee
Q 015838 381 EV 382 (399)
Q Consensus 381 Ei 382 (399)
.-
T Consensus 220 ~~ 221 (224)
T cd01085 220 TE 221 (224)
T ss_pred CC
Confidence 54
No 24
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=100.00 E-value=2.9e-40 Score=335.65 Aligned_cols=237 Identities=24% Similarity=0.315 Sum_probs=203.7
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHc----CCCCCCCCCCCCCceeeeCCCCcccc
Q 015838 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITA----GGYPSPLNYHFFPKSCCTSVNEVICH 215 (399)
Q Consensus 140 r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~----G~~ps~l~~~~fp~~v~~g~n~~~~H 215 (399)
+..+|++||+.||+|++|++++++.+.+.++||+|+.||+..++..+.+. |+.. ..+||+ ++|.|++.+|
T Consensus 150 ~~~~s~~EI~~~R~AaeIa~~vl~~~~~~IkpG~se~EIa~~ie~~ir~~~~~~G~~~----g~aFPt--~vS~N~~aaH 223 (470)
T PTZ00053 150 LEKLSEEQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADGLKC----GWAFPT--GCSLNHCAAH 223 (470)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcCCcc----cCCCCc--eeecCccccC
Confidence 45589999999999999999999999999999999999999888866554 5432 257986 5689999999
Q ss_pred CCCC---CCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 015838 216 GIPD---SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292 (399)
Q Consensus 216 g~p~---~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~ 292 (399)
++|+ +++|++||+|.||+|+.++||++|++|||++| ++++++++++++|++++|++++||++++||++++++++
T Consensus 224 ~tP~~gd~~vLk~GDvVkID~G~~vdGYiaD~ArTv~vg---~~~~~L~eAv~eA~~aaI~~~kpGv~~~dI~~AIqevi 300 (470)
T PTZ00053 224 YTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAFN---PKYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVI 300 (470)
T ss_pred CCCCCCCCcEecCCCeEEEEEeEEECCEEEeEEEEEEeC---HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 9995 68999999999999999999999999999997 68899999999999999999999999999999999999
Q ss_pred HHcCCc---------ccccceeeccCC-ccccCCCCCCCCCCCCCceecCCcEEEEccccccCCccccc-----------
Q 015838 293 TMSGFS---------VVKSYCGHGIGE-LFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRM----------- 351 (399)
Q Consensus 293 ~~~G~~---------~~~~~~GHGIG~-~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~----------- 351 (399)
+++||. .+++++|||||+ .+|+.|.+|.+. ..+..+|++||||+|||+++.|...+..
T Consensus 301 es~G~e~~Gk~f~~k~I~nltGHgIG~y~iHe~k~iP~v~-~~~~~~LeeGmVfaIEPf~stG~G~v~~~~~~siY~~~~ 379 (470)
T PTZ00053 301 ESYEVEIKGKTYPIKSIRNLNGHSIGPYIIHGGKSVPIVK-GGENTRMEEGELFAIETFASTGRGYVNEDLECSHYMKDP 379 (470)
T ss_pred HHcCCcccCcccccccccCCcccCCCCccccCCCcCCeeC-CCCCCEecCCCEEEEcceeeCCCCeEecCCCceeeeEcC
Confidence 999974 468999999997 899988888664 4556799999999999999988753221
Q ss_pred -------------------------------CCCCce----------------------EEeeCCeeeEEEEEEEEEeCC
Q 015838 352 -------------------------------WPDGWT----------------------AVTADGKRSAQFEHTLLVTET 378 (399)
Q Consensus 352 -------------------------------wpD~wt----------------------~~t~~g~~~~~~EdtvlVTe~ 378 (399)
|=|+-+ .+..+|.+.+||||||||+++
T Consensus 380 ~~~~~~lk~~~ar~ll~~I~~~f~tlPF~~R~l~~~~~~~~~~gl~~lv~~giv~~Yp~L~e~~G~~VAQfehTvll~p~ 459 (470)
T PTZ00053 380 GAEFVPLRLPKAKQLLKHINTNFGTLAFCRRWLDRLGQDRHLLALKQLVDAGIVNPYPPLCDVRGSYTSQMEHTILLRPT 459 (470)
T ss_pred cCCcCCCCCHHHHHHHHHHHHHCCCCCcchhhhhccchhHHHHHHHHHHHCCCcccCCccCccCCCEEeEEEEEEEECCC
Confidence 101100 034568889999999999999
Q ss_pred CeeeccCC
Q 015838 379 GVEVLTAR 386 (399)
Q Consensus 379 G~EiLT~~ 386 (399)
|.|+||+.
T Consensus 460 ~~~vis~g 467 (470)
T PTZ00053 460 CKEVLSRG 467 (470)
T ss_pred CCEecCCC
Confidence 99999975
No 25
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=100.00 E-value=1.1e-40 Score=308.41 Aligned_cols=204 Identities=35% Similarity=0.521 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HHHcCCCCCCCCCCCCCceeeeCCCCccccCCCCCCcCCCCC
Q 015838 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEA-TITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (399)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~-~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GD 227 (399)
|+||+|++|++++++++.+.++||+||.||.+.+.++ +.++|... .+||.++++|.|...+|+.|++++|++||
T Consensus 1 e~~R~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~~g~~~-----~~~~~~~~~g~~~~~~~~~~~~~~l~~gd 75 (207)
T PF00557_consen 1 ECMRKAARIADAAMEAAMEALRPGMTEYEIAAAIERAMLRRHGGEE-----PAFPPIVGSGPNTDLPHYTPTDRRLQEGD 75 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCBHHHHHHHHHHHHHHHTTTTE-----ESSESEEEECCCCGETTTBCCSSBESTTE
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHcCCCc-----ccCCceEecCCcceecceeccceeeecCC
Confidence 6899999999999999999999999999999999998 56667432 35888999999999999999999999999
Q ss_pred eEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCC-cccccceee
Q 015838 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF-SVVKSYCGH 306 (399)
Q Consensus 228 iV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~-~~~~~~~GH 306 (399)
+|+||+++.++||++|++||+++| ++++++++++.++++++.+++.+|||++++||++++.+.++++|| ....+.+||
T Consensus 76 ~v~id~~~~~~gy~~d~~Rt~~~G-~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~g~~~~~~~~~GH 154 (207)
T PF00557_consen 76 IVIIDFGPRYDGYHADIARTFVVG-PTPEQRRAYEAAREALEAAIEALRPGVTGSDVYEAVREVLEEYGLEEPYPHGLGH 154 (207)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESS-SHHHHHHHHHHHHHHHHHHHHH-STTSBHHHHHHHHHHHHHHTTEGEEBTSSSEE
T ss_pred cceeeccceeeeeEeeeeeEEEEe-ecccccchhhhhHHHHHhHhhhcccccccchhhHHHHHHHHhhcccceeeecccc
Confidence 999999999999999999999999 999999999999999999999999999999999999999999999 566778999
Q ss_pred ccCCccccC-CCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeC
Q 015838 307 GIGELFHCA-PNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTE 377 (399)
Q Consensus 307 GIG~~~he~-P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe 377 (399)
|||+.+|+. |++.. .+++.+|++||||+|||+++. .++.+++++||||+|||
T Consensus 155 ~iG~~~~~~~P~i~~---~~~~~~l~~gmv~~iep~~~~----------------~~~~~g~~~ed~v~Vte 207 (207)
T PF00557_consen 155 GIGLEFHEPGPNIAR---PGDDTVLEPGMVFAIEPGLYF----------------IPGWGGVRFEDTVLVTE 207 (207)
T ss_dssp EESSSSSEEEEEESS---TTTSSB--TTBEEEEEEEEEE----------------ETTSEEEEEBEEEEEES
T ss_pred cccccccccceeeec---ccccceecCCCceeEeeeEEc----------------cCCCcEEEEEEEEEECc
Confidence 999999997 98763 346789999999999998774 13567999999999996
No 26
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=100.00 E-value=3.6e-40 Score=310.63 Aligned_cols=214 Identities=27% Similarity=0.413 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCC--CCC-CCC--CCCCCceeeeCCCCccccCCC----
Q 015838 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGG--YPS-PLN--YHFFPKSCCTSVNEVICHGIP---- 218 (399)
Q Consensus 148 Ie~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~--~ps-~l~--~~~fp~~v~~g~n~~~~Hg~p---- 218 (399)
+++||+|++|++++++.+.+.++||+||.||+..+++.+.+... ++. ..+ ...|| .+++.|+..+|+.|
T Consensus 1 ~~~~r~A~~I~~~~~~~~~~~i~pG~te~ei~~~~e~~i~~~~~~~~~~~~~g~~g~~~~--~~v~~n~~~~H~~p~~~~ 78 (228)
T cd01089 1 VTKYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFP--TCISVNNCVCHFSPLKSD 78 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHhhcccccCcccccCCCCcC--eEeccCceeecCCCCCCC
Confidence 36899999999999999999999999999998888777776322 221 122 23455 44557999999996
Q ss_pred CCCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCH-----HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 015838 219 DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADE-----ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT 293 (399)
Q Consensus 219 ~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~-----~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~ 293 (399)
++++|++||+|+||+|+.++||++|++|||++|++++ ++++++++++++++++++++|||++++||+++++++++
T Consensus 79 ~~~~l~~Gd~v~iD~g~~~~GY~sD~tRT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~~~dv~~a~~~~~~ 158 (228)
T cd01089 79 ATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIV 158 (228)
T ss_pred CCcccCCCCEEEEEEEEEECCEEEEEEEEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999998875 89999999999999999999999999999999999999
Q ss_pred HcCCcccccceeeccCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEE
Q 015838 294 MSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTL 373 (399)
Q Consensus 294 ~~G~~~~~~~~GHGIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~Edtv 373 (399)
++||.++..++||++|..++..|... +-...|++||||++||+++. +|.+++++||||
T Consensus 159 ~~G~~~~~~~~~h~~g~~~~~~~~~~-----~~~~~l~~gmvf~~ep~~~~-----------------~g~~~~~~~~Tv 216 (228)
T cd01089 159 DYGCTPVEGVLSHQLKRVVSSGEGKA-----KLVECVKHGLLFPYPVLYEK-----------------EGEVVAQFKLTV 216 (228)
T ss_pred HcCCEEecCccccCcCceEecCCCCc-----cchhhccCCcccccceeEcc-----------------CCCeEEEEEEEE
Confidence 99999999999999998654443211 12468999999999998876 688999999999
Q ss_pred EEeCCCeeeccC
Q 015838 374 LVTETGVEVLTA 385 (399)
Q Consensus 374 lVTe~G~EiLT~ 385 (399)
+||++|+|.||.
T Consensus 217 ~vt~~G~e~lt~ 228 (228)
T cd01089 217 LLTPNGVTVLTG 228 (228)
T ss_pred EEcCCCCeeCCC
Confidence 999999999984
No 27
>PRK08671 methionine aminopeptidase; Provisional
Probab=100.00 E-value=1.1e-39 Score=318.03 Aligned_cols=227 Identities=33% Similarity=0.531 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCC---CCcC
Q 015838 147 QIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD---SRKL 223 (399)
Q Consensus 147 EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~---~r~L 223 (399)
+|+.||+|++|++++++.+.+.++||+|+.||++.+++.+.+.|+.++ ||.. ++.|+..+|+.|. +++|
T Consensus 1 ~i~~~r~A~~I~~~~~~~~~~~i~pG~se~ei~~~~~~~i~~~g~~~a------fp~~--vs~n~~~~H~~p~~~d~~~l 72 (291)
T PRK08671 1 ELEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPA------FPCN--ISINEVAAHYTPSPGDERVF 72 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCccC------CCCE--EeeCCCccCCCCCCCCCccc
Confidence 589999999999999999999999999999999999999999998764 7854 4578888999986 6899
Q ss_pred CCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCcccccc
Q 015838 224 EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSY 303 (399)
Q Consensus 224 ~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~~~~~ 303 (399)
++||+|+||+|+.++||++|++||+++| ++++++++++.+|++++++.+|||++++||+++++++++++||....++
T Consensus 73 ~~GDvV~iD~G~~~dGY~aD~arT~~vG---~~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~~G~~~~~~~ 149 (291)
T PRK08671 73 PEGDVVKLDLGAHVDGYIADTAVTVDLG---GKYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNL 149 (291)
T ss_pred CCCCEEEEEEeEEECCEEEEEEEEEEeC---hhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccCCC
Confidence 9999999999999999999999999998 4788999999999999999999999999999999999999999988889
Q ss_pred eeeccCC-ccccCCCCCCCCCCCCCceecCCcEEEEccccccCCccccc-------------------------------
Q 015838 304 CGHGIGE-LFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRM------------------------------- 351 (399)
Q Consensus 304 ~GHGIG~-~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~------------------------------- 351 (399)
+|||||+ .+|+.|.+|.+. ..++.+|++||||+|||+++.|......
T Consensus 150 ~GHgiG~~~~he~p~ip~~~-~~~~~~le~GmV~aIEp~~t~G~G~v~~~~~~~iy~~~~~~~~k~~~~r~~~~~i~~~~ 228 (291)
T PRK08671 150 TGHGLERYELHAGPSIPNYD-EGGGVKLEEGDVYAIEPFATDGEGKVVEGPEVEIYSLLRNRPVRLPAARKLLEEIEEEY 228 (291)
T ss_pred cccCcCCCcccCCCccCccC-CCCCceeCCCCEEEEcceEECCCCeEecCCceEEEeecCCCCCCCHHHHHHHHHHHHHC
Confidence 9999996 799999998754 4457899999999999999887653221
Q ss_pred --CC-------CCce--------------------EEeeCCeeeEEEEEEEEEeCCCeeeccC
Q 015838 352 --WP-------DGWT--------------------AVTADGKRSAQFEHTLLVTETGVEVLTA 385 (399)
Q Consensus 352 --wp-------D~wt--------------------~~t~~g~~~~~~EdtvlVTe~G~EiLT~ 385 (399)
.| |... ...++|..-+||||||+||++|++++|.
T Consensus 229 ~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~~yp~l~e~~~~~vaq~~~Tv~v~~~g~~~~t~ 291 (291)
T PRK08671 229 NTLPFAERWLEGLFGEDKLELRRLLKAGALYGYPVLKEVKGGLVSQAEHTVIVTEDGCEVTTK 291 (291)
T ss_pred CCCCcchHHhhccchhhHHHHHHHHHCCCcccCCccEecCCCEEEEEEEEEEECCCCcEEecC
Confidence 11 0000 1456788899999999999999999984
No 28
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=100.00 E-value=4.5e-40 Score=312.69 Aligned_cols=227 Identities=16% Similarity=0.183 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----hcCCC--CcHHHHHHHHHHHHHHcCCCCCCCC----CCCCCceeeeCCCC-cccc
Q 015838 148 IERMRETCRIAREVLDAAAR-----MIRPG--VTTDEIDRVVHEATITAGGYPSPLN----YHFFPKSCCTSVNE-VICH 215 (399)
Q Consensus 148 Ie~~R~A~~ia~~~l~~~~~-----~i~pG--vTe~Ei~~~v~~~~~~~G~~ps~l~----~~~fp~~v~~g~n~-~~~H 215 (399)
++.||+|++++..+|...+. .|.+| +|+.+|+..++..+.+.+.....+. -..||+++++|.|. ...|
T Consensus 1 ~~~~~~a~~~~~~~~~~~~~~~~~~~id~~~~~t~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~y~~iv~sG~~~~~l~h 80 (243)
T cd01091 1 LNNIKKASDATVDVLKKFFVDEVEEIIDQEKKVTHSKLSDKVEKAIEDKKKYKAKLDPEQLDWCYPPIIQSGGNYDLLKS 80 (243)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhCchhhhcCCCHHHcCcccCCeEeECcCcccCCC
Confidence 46899999999999976665 99999 9999999999999998874411111 35799999999998 8999
Q ss_pred CCCCCCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHc
Q 015838 216 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMS 295 (399)
Q Consensus 216 g~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~ 295 (399)
+.++++.++.|++|++|+|++|+||++|++|||++| ++++++++|++++++++++++++|||++++||++++.+++++.
T Consensus 81 ~~~s~~~~~~~~~vl~d~G~~y~gY~sditRT~~v~-p~~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~~~ 159 (243)
T cd01091 81 SSSSDKLLYHFGVIICSLGARYKSYCSNIARTFLID-PTSEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKK 159 (243)
T ss_pred CCCCccccCCCCEEEEEeCcccCCEeecceEEEEcC-CCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999997 7999999999999999999999999999999999999999998
Q ss_pred CCccc---ccceeeccCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEE
Q 015838 296 GFSVV---KSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHT 372 (399)
Q Consensus 296 G~~~~---~~~~GHGIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~Edt 372 (399)
|.... .+.+|||||+++||.|.+.. .+++.+|++||||+|||+++.-.. ...+++ .++.+++++|||
T Consensus 160 ~~~~~~~~~~~~GHgiGle~hE~~~~l~---~~~~~~L~~GMvf~vepGi~~~~~-~~~~~~------~~~~~gv~ieDt 229 (243)
T cd01091 160 KPELEPNFTKNLGFGIGLEFRESSLIIN---AKNDRKLKKGMVFNLSIGFSNLQN-PEPKDK------ESKTYALLLSDT 229 (243)
T ss_pred ChhHHHhCcCCcccccCcccccCccccC---CCCCCCcCCCCEEEEeCCcccccC-ccccCc------cCCeeEEEEEEE
Confidence 85433 34599999999999876432 345679999999999999873110 001111 236789999999
Q ss_pred EEEeCCCe-eeccC
Q 015838 373 LLVTETGV-EVLTA 385 (399)
Q Consensus 373 vlVTe~G~-EiLT~ 385 (399)
|+||++|+ |+||.
T Consensus 230 V~Vt~~G~~~~LT~ 243 (243)
T cd01091 230 ILVTEDEPAIVLTN 243 (243)
T ss_pred EEEcCCCCceecCC
Confidence 99999999 99984
No 29
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=100.00 E-value=1.5e-39 Score=297.48 Aligned_cols=206 Identities=33% Similarity=0.553 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCCCCcCCCCC
Q 015838 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (399)
Q Consensus 148 Ie~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GD 227 (399)
|+.||+|+++++++++.+.+.++||+||.||.+.+++.+.++|+.+ .|+..+.+|.|...+|+.|++++|++||
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~~------~~~~~v~~g~~~~~~h~~~~~~~i~~gd 74 (207)
T cd01066 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYP------AGPTIVGSGARTALPHYRPDDRRLQEGD 74 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC------CCCcEEEECccccCcCCCCCCCCcCCCC
Confidence 5789999999999999999999999999999999999999999843 3677888888888999999999999999
Q ss_pred eEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCC-cccccceee
Q 015838 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF-SVVKSYCGH 306 (399)
Q Consensus 228 iV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~-~~~~~~~GH 306 (399)
+|++|+++.++||++|++|||++|+++++++++++.+.++++.+++.+|||+++.||+++++++++++|+ ....+++||
T Consensus 75 ~v~~d~g~~~~gy~~d~~rt~~~g~~~~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~~~g~~~~~~~~~Gh 154 (207)
T cd01066 75 LVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGH 154 (207)
T ss_pred EEEEEeceeECCCccceeceeEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCccccCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 466788999
Q ss_pred ccCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeCCCe
Q 015838 307 GIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGV 380 (399)
Q Consensus 307 GIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe~G~ 380 (399)
|||+.+||.|.+. .+.+.+|++||||+|||+++. ++.+++++||||+||++|+
T Consensus 155 ~iG~~~~e~~~~~----~~~~~~l~~gmv~~iep~~~~-----------------~~~~g~~~ed~v~vt~~g~ 207 (207)
T cd01066 155 GIGLEIHEPPVLK----AGDDTVLEPGMVFAVEPGLYL-----------------PGGGGVRIEDTVLVTEDGP 207 (207)
T ss_pred ccCcccCCCCCcC----CCCCCCcCCCCEEEECCEEEE-----------------CCCcEEEeeeEEEEeCCCC
Confidence 9999999998844 345679999999999998886 3467899999999999985
No 30
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=100.00 E-value=7e-39 Score=312.72 Aligned_cols=229 Identities=30% Similarity=0.421 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCC---CC
Q 015838 145 PDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD---SR 221 (399)
Q Consensus 145 ~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~---~r 221 (399)
-+||+.||+|++|++++++.+.+.++||+|+.||++.++..+.+.|+.+ +||..+ +.|+..+|+.|. ++
T Consensus 2 ~~~i~~~r~A~~I~~~~~~~~~~~i~~G~se~el~~~~e~~~~~~g~~~------aFp~~v--s~n~~~~H~~p~~~d~~ 73 (295)
T TIGR00501 2 IERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEP------AFPCNI--SINECAAHFTPKAGDKT 73 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC------CCCcce--ecCCEeeCCCCCCCcCc
Confidence 3789999999999999999999999999999999999999999999886 488654 579999999985 67
Q ss_pred cCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCcccc
Q 015838 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVK 301 (399)
Q Consensus 222 ~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~~~ 301 (399)
+|++||+|+||+|+.++||++|++|||++|+ .++++++++++|++++++.+|||++++||+++++++++++||..+.
T Consensus 74 ~l~~GDvV~iD~G~~~dGY~aD~arT~~vG~---~~~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai~~vi~~~G~~~i~ 150 (295)
T TIGR00501 74 VFKDGDVVKLDLGAHVDGYIADTAITVDLGD---QYDNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPIS 150 (295)
T ss_pred cCCCCCEEEEEEeEEECCEEEEEEEEEEeCc---HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeeec
Confidence 8999999999999999999999999999985 3789999999999999999999999999999999999999999888
Q ss_pred cceeeccC-CccccCCCCCCCCCCCCCceecCCcEEEEccccccCCccccc-----------------------------
Q 015838 302 SYCGHGIG-ELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRM----------------------------- 351 (399)
Q Consensus 302 ~~~GHGIG-~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~----------------------------- 351 (399)
+++||||| +.+|+.+.+|.+. .+...+|++||||+|||+++.|......
T Consensus 151 ~~~GHgig~~~~h~g~~ip~i~-~~~~~~le~GmV~aIEP~~~~G~G~v~~~~~~~iy~~~~~~~~k~~~~r~~l~~i~~ 229 (295)
T TIGR00501 151 NLTGHSMAPYRLHGGKSIPNVK-ERDTTKLEEGDVVAIEPFATDGVGYVTDGGEVSIYAFLAERPVRLDSARNLLKTIDE 229 (295)
T ss_pred CCCCcceecccccCCCccCeec-CCCCCEeCCCCEEEEceeEECCcCeEecCCCeEEEeECCCCCCCCHHHHHHHHHHHH
Confidence 99999999 4789887777553 3456799999999999999876542211
Q ss_pred ----CC------CCce----------------------EEeeCCeeeEEEEEEEEEeCCCeeeccC
Q 015838 352 ----WP------DGWT----------------------AVTADGKRSAQFEHTLLVTETGVEVLTA 385 (399)
Q Consensus 352 ----wp------D~wt----------------------~~t~~g~~~~~~EdtvlVTe~G~EiLT~ 385 (399)
.| ++-. ...++|..-+||||||+|+++|++++|.
T Consensus 230 ~~~~~pF~~r~l~~~~~~~~~~~l~~~~~~~~~~~yp~l~e~~g~~vaq~~~Tv~v~~~g~~~~t~ 295 (295)
T TIGR00501 230 NYGTLPFARRWLDKLGDEKYLFALNNLIRHGLIYDYPVLNEISGGYVAQWEHTILVEEHGKEVTTK 295 (295)
T ss_pred HCCCCCcchhHhcccchhHHHHHHHHHHHCCCccCCCccEeeCCCEEEEEEEEEEECCCccEEcCC
Confidence 11 1100 1456788899999999999999999984
No 31
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=100.00 E-value=6.6e-39 Score=312.49 Aligned_cols=226 Identities=32% Similarity=0.470 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCCC---CcCC
Q 015838 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDS---RKLE 224 (399)
Q Consensus 148 Ie~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~---r~L~ 224 (399)
++.||+|+++++++++++.+.++||+|+.||++.+++.+.++|+.++ ||. ++|.|+..+|+.|+. ++|+
T Consensus 1 ~~~~r~Aa~I~~~a~~~~~~~i~pG~te~ei~~~~~~~i~~~G~~~a------fp~--~is~n~~~~H~~p~~~d~~~l~ 72 (291)
T cd01088 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGPA------FPV--NLSINECAAHYTPNAGDDTVLK 72 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCCCCC------CCc--eeccCCEeeCCCCCCCCCcccC
Confidence 36899999999999999999999999999999999999999997654 774 568999999999964 8999
Q ss_pred CCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCcccccce
Q 015838 225 DGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYC 304 (399)
Q Consensus 225 ~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~~~~~~ 304 (399)
+||+|.+|+|+.++||++|++|||++|+ +++++++++++|++++++++|||++++||+++++++++++||..+.+++
T Consensus 73 ~GDvV~iD~G~~~dGY~sD~arT~~vg~---~~~~l~ea~~~A~~~ai~~ikPG~~~~dV~~ai~~~i~~~G~~~~~~~~ 149 (291)
T cd01088 73 EGDVVKLDFGAHVDGYIADSAFTVDFDP---KYDDLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLT 149 (291)
T ss_pred CCCEEEEEEEEEECCEEEEEEEEEecCh---hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCEEeecCC
Confidence 9999999999999999999999999985 7889999999999999999999999999999999999999999888999
Q ss_pred eeccCC-ccccCCCCCCCCCCCCCceecCCcEEEEccccccCCccccc--------------------------------
Q 015838 305 GHGIGE-LFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRM-------------------------------- 351 (399)
Q Consensus 305 GHGIG~-~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~-------------------------------- 351 (399)
|||||+ .+|+.|.+|.+.. +.+.+|+|||||+|||+++.|......
T Consensus 150 GHgig~~~~h~~~~ip~~~~-~~~~~le~gmV~aIEp~~s~G~G~v~~~~~~~iy~~~~~~~~~~~~~r~~~~~i~~~~~ 228 (291)
T cd01088 150 GHSIERYRLHAGKSIPNVKG-GEGTRLEEGDVYAIEPFATTGKGYVHDGPECSIYMLNRDKPLRLPRARKLLDVIYENFG 228 (291)
T ss_pred ccCccCccccCCCccCccCC-CCCCEeCCCCEEEEceeEECCCCeeecCCceEEEEEcCCCCCCCHHHHHHHHHHHHHCC
Confidence 999994 7999988887643 346899999999999999887653211
Q ss_pred -------CCCCc--e--------------------EEeeCCeeeEEEEEEEEEeCCCeeeccC
Q 015838 352 -------WPDGW--T--------------------AVTADGKRSAQFEHTLLVTETGVEVLTA 385 (399)
Q Consensus 352 -------wpD~w--t--------------------~~t~~g~~~~~~EdtvlVTe~G~EiLT~ 385 (399)
|=++- . ...++|..-+||||||+||++|++++|.
T Consensus 229 ~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~~~y~~l~e~~g~~vaq~~~T~~v~~~g~~~~t~ 291 (291)
T cd01088 229 TLPFARRWLDRLGETKLLMALKNLCKAGIVYPYPVLKEISGGYVAQFEHTIIVREDGKEVTTR 291 (291)
T ss_pred CCCcChHHhhccchhhHHHHHHHHHHCCCcccCCccEeeCCCeEEEEEEEEEECCCCcEecCC
Confidence 11111 0 1456788999999999999999999984
No 32
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.5e-39 Score=311.20 Aligned_cols=239 Identities=23% Similarity=0.301 Sum_probs=214.3
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccC
Q 015838 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG 216 (399)
Q Consensus 137 ~~~r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg 216 (399)
..+|.||||.|++.||+||.|+.+++-..+..-|++..|..|.+.++..++.+|+.- .+||+.|+.|.|....|+
T Consensus 223 ~~lRlIKSpaEl~~Mr~a~~I~sq~~~~~m~~sr~~~~E~~l~a~~eye~r~rGad~-----~AYpPVVAgG~na~tIHY 297 (488)
T KOG2414|consen 223 ERLRLIKSPAELELMREACNIASQTFSETMFGSRDFHNEAALSALLEYECRRRGADR-----LAYPPVVAGGKNANTIHY 297 (488)
T ss_pred HHHHccCCHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhhHhhhhhhheeecCccc-----cccCCeeecCcccceEEE
Confidence 457899999999999999999999999999999999999999999999999999974 479999999999999999
Q ss_pred CCCCCcCCCCCeEEEEEeeEeCCEEeceeeEEEe-CCCCHHHHHHHHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHH-
Q 015838 217 IPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKP--GVRFREIGEVINRHA- 292 (399)
Q Consensus 217 ~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~v-G~~~~~~~~l~~~~~ea~~~~i~~lkP--G~~~~eI~~ai~~~~- 292 (399)
.-++..|.++|.|++|.|+.++||.+|++|||.+ |+.++.|++||+++...++..|+.|+| |.++.+|+....+.+
T Consensus 298 ~~Nnq~l~d~emVLvDaGcelgGYvSDITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~c~~~~g~sL~~l~~~s~~Ll~ 377 (488)
T KOG2414|consen 298 VRNNQLLKDDEMVLVDAGCELGGYVSDITRTWPISGKFSDAQRDLYEAVLQVQEECIKYCKPSNGTSLSQLFERSNELLG 377 (488)
T ss_pred eecccccCCCcEEEEecCcccCceEccceeccCCCCccCcHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 899999999999999999999999999 999999998766554
Q ss_pred ---HHcCCc------------ccccceeeccCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCce
Q 015838 293 ---TMSGFS------------VVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWT 357 (399)
Q Consensus 293 ---~~~G~~------------~~~~~~GHGIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt 357 (399)
++.|.. ...|+.||-+|+++|+-|.++. +..|+|||||||||++|.+.. ..||..+
T Consensus 378 ~~Lk~lGI~kt~~ee~~~~~klcPHhVgHyLGmDVHD~p~v~r------~~pL~pg~ViTIEPGvYIP~d--~d~P~~F- 448 (488)
T KOG2414|consen 378 QELKELGIRKTDREEMIQAEKLCPHHVGHYLGMDVHDCPTVSR------DIPLQPGMVITIEPGVYIPED--DDPPEEF- 448 (488)
T ss_pred HHHHHhCcccchHHHHHhhhhcCCcccchhcCcccccCCCCCC------CccCCCCceEEecCceecCcc--CCCchHh-
Confidence 445532 3467899999999999999873 358999999999999998532 1455444
Q ss_pred EEeeCCeeeEEEEEEEEEeCCCeeeccCCCCCCCCcc
Q 015838 358 AVTADGKRSAQFEHTLLVTETGVEVLTARLPSSPKVY 394 (399)
Q Consensus 358 ~~t~~g~~~~~~EdtvlVTe~G~EiLT~~~~~~~~~~ 394 (399)
...|+|+||.|+|+|+|+|+||...|+++..+
T Consensus 449 -----rGIGiRIEDDV~i~edg~evLT~a~pKei~~i 480 (488)
T KOG2414|consen 449 -----RGIGIRIEDDVAIGEDGPEVLTAACPKEIIEI 480 (488)
T ss_pred -----cCceEEeecceEeccCCceeehhcccCCHHHH
Confidence 45689999999999999999999999998654
No 33
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=278.16 Aligned_cols=254 Identities=21% Similarity=0.320 Sum_probs=205.4
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccC
Q 015838 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG 216 (399)
Q Consensus 137 ~~~r~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg 216 (399)
...|.|||+.||+.||.|++|++++..+++++++||+.|.++...+......+|.-.. .+|..++|+|.|..+.|+
T Consensus 180 ~E~RviKs~~EieviRya~kISseaH~~vM~~~~pg~~Eyq~eslF~hh~y~~GGcRh----~sYtcIc~sG~ns~vLHY 255 (492)
T KOG2737|consen 180 AECRVIKSSLEIEVIRYANKISSEAHIEVMRAVRPGMKEYQLESLFLHHSYSYGGCRH----LSYTCICASGDNSAVLHY 255 (492)
T ss_pred hhheeeCCHHHHHHHHHHHhhccHHHHHHHHhCCchHhHHhHHHHHHHhhhccCCccc----cccceeeecCCCcceeec
Confidence 4679999999999999999999999999999999999999999999888888876432 468889999999999998
Q ss_pred ----CCCCCcCCCCCeEEEEEeeEeCCEEeceeeEEEe-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 015838 217 ----IPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH 291 (399)
Q Consensus 217 ----~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~v-G~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~ 291 (399)
.|+++.+|+||++++|.|+.|.+|.+|++++|.+ |+.+++|+.+|++++.++.++++++|||+...|++....++
T Consensus 256 gha~apNd~~iqdgd~cLfDmGaey~~yaSDITcsFP~nGKFTadqk~VYnaVLda~navm~a~KpGv~W~Dmh~La~kv 335 (492)
T KOG2737|consen 256 GHAGAPNDRTIQDGDLCLFDMGAEYHFYASDITCSFPVNGKFTADQKLVYNAVLDASNAVMEAMKPGVWWVDMHKLAEKV 335 (492)
T ss_pred cccCCCCCcccCCCCEEEEecCcceeeeecccceeccCCCccchhHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 8999999999999999999999999999999999 89999999999999999999999999999999999876654
Q ss_pred ----HHHcCC---------------cccccceeeccCCccccCCCCC-CCCCC--------CCCceecCCcEEEEccccc
Q 015838 292 ----ATMSGF---------------SVVKSYCGHGIGELFHCAPNIP-HYSRN--------KAVGVMKVGQTFTIEPMIN 343 (399)
Q Consensus 292 ----~~~~G~---------------~~~~~~~GHGIG~~~he~P~i~-~~~~~--------~~~~~l~~GmvftIEP~i~ 343 (399)
+++.|. -..+|-+||-+|+++|+----| .+.+. +..+.|++|||+||||+.|
T Consensus 336 lle~laq~gIl~gdvd~m~~ar~~~vF~PHGLGH~lGlDvHDvGGyp~~~~rp~~P~l~~LR~aR~L~e~MviTvEPGcY 415 (492)
T KOG2737|consen 336 LLEHLAQMGILKGDVDEMVEARLGAVFMPHGLGHFLGLDVHDVGGYPEGVERPDEPGLRSLRTARHLKEGMVITVEPGCY 415 (492)
T ss_pred HHHHHHhcCceeccHHHHHHhccCeeeccccccccccccccccCCCCCCCCCCCcchhhhhhhhhhhhcCcEEEecCChh
Confidence 344443 1234668999999999742222 22221 2346899999999999988
Q ss_pred cCCccc-ccCCCCceE--E------eeCCeeeEEEEEEEEEeCCCeeeccCCCCCCCCccc
Q 015838 344 AGVWRD-RMWPDGWTA--V------TADGKRSAQFEHTLLVTETGVEVLTARLPSSPKVYP 395 (399)
Q Consensus 344 ~g~~~~-~~wpD~wt~--~------t~~g~~~~~~EdtvlVTe~G~EiLT~~~~~~~~~~~ 395 (399)
+-.+-. ....|--++ + --.+.+|+|+||.|+||.+|+|.||. .|+.+++++
T Consensus 416 Fi~~Ll~ealadp~~~~f~n~e~~~rfr~~GGVRIEdDv~vt~~G~enlt~-vprtveeIE 475 (492)
T KOG2737|consen 416 FIDFLLDEALADPARAEFLNREVLQRFRGFGGVRIEDDVVVTKSGIENLTC-VPRTVEEIE 475 (492)
T ss_pred HHHHHHHHHhcChHhhhhhhHHHHHHhhccCceEeeccEEEeccccccccC-CCCCHHHHH
Confidence 744311 111111000 0 01378899999999999999999996 466665543
No 34
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=99.91 E-value=1.1e-23 Score=217.33 Aligned_cols=243 Identities=18% Similarity=0.274 Sum_probs=195.4
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHH-----HHhcCCC--CcHHHHHHHHHHHHHHc----CCCCCCCCCCCCCce
Q 015838 136 LQHVVEIKTPDQIERMRETCRIAREVLDAA-----ARMIRPG--VTTDEIDRVVHEATITA----GGYPSPLNYHFFPKS 204 (399)
Q Consensus 136 ~~~~r~iKs~~EIe~~R~A~~ia~~~l~~~-----~~~i~pG--vTe~Ei~~~v~~~~~~~----G~~ps~l~~~~fp~~ 204 (399)
+..+..||++.||+.+|+|++++..+|... ..+|..| ||..-|...+..++.+. |..|..+ -+.||++
T Consensus 131 ls~l~avKDd~Ei~~irksa~~s~~vm~k~~~~~~~~aiD~ekkvthskLsD~~e~~I~~~k~s~~l~~~~~-d~cY~PI 209 (960)
T KOG1189|consen 131 LSKLFAVKDDEEIANIRKSAAASSAVMNKYLVDELVEAIDEEKKVTHSKLSDLMESAIEDKKYSPGLDPDLL-DMCYPPI 209 (960)
T ss_pred hhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhccccCcccCcccc-ccccChh
Confidence 467889999999999999999999999843 3455555 57777777777776653 3444222 3569999
Q ss_pred eeeCCC-CccccCCCCCCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHH
Q 015838 205 CCTSVN-EVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFRE 283 (399)
Q Consensus 205 v~~g~n-~~~~Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~e 283 (399)
+.+|.+ ..-+....++..| + +|+..+|++|++||++++|||+| .|+.++++.|+..+.+|.+++..||||++.++
T Consensus 210 iqSGg~ydlk~sa~s~~~~L--~-~I~cs~G~RynsYCSNv~RT~Li-dpssemq~nY~fLl~aqe~il~~lrpG~ki~d 285 (960)
T KOG1189|consen 210 IQSGGKYDLKPSAVSDDNHL--H-VILCSLGIRYNSYCSNVSRTYLI-DPSSEMQENYEFLLAAQEEILKLLRPGTKIGD 285 (960)
T ss_pred hhcCCccccccccccccccc--c-eEEeeccchhhhhhccccceeee-cchHHHHHHHHHHHHHHHHHHHhhcCCCchhH
Confidence 999988 4445666778888 4 99999999999999999999999 68999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccccc---eeeccCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEe
Q 015838 284 IGEVINRHATMSGFSVVKSY---CGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVT 360 (399)
Q Consensus 284 I~~ai~~~~~~~G~~~~~~~---~GHGIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t 360 (399)
||.++.+++++.+...+..+ .|.|||++|+|.-.+.+ .+++.+|++||||.|.-++..-+.. .
T Consensus 286 VY~~~l~~v~k~~Pel~~~~~k~lG~~iGlEFREssl~in---aKnd~~lk~gmvFni~lGf~nl~n~-----------~ 351 (960)
T KOG1189|consen 286 VYEKALDYVEKNKPELVPNFTKNLGFGIGLEFRESSLVIN---AKNDRVLKKGMVFNISLGFSNLTNP-----------E 351 (960)
T ss_pred HHHHHHHHHHhcCcchhhhhhhhcccccceeeeccccccc---ccchhhhccCcEEEEeeccccccCc-----------c
Confidence 99999999999998754333 79999999999876553 4667899999999999877653221 0
Q ss_pred eCCeeeEEEEEEEEEeCCCe-eeccCCCCCCCCccccc
Q 015838 361 ADGKRSAQFEHTLLVTETGV-EVLTARLPSSPKVYPWL 397 (399)
Q Consensus 361 ~~g~~~~~~EdtvlVTe~G~-EiLT~~~~~~~~~~~~~ 397 (399)
..+.+++.+.|||||+++++ ++||...+.-.+...+|
T Consensus 352 ~~~~yaL~l~DTvlv~e~~p~~vLT~~~K~~~dv~~~f 389 (960)
T KOG1189|consen 352 SKNSYALLLSDTVLVGEDPPAEVLTDSAKAVKDVSYFF 389 (960)
T ss_pred cccchhhhccceeeecCCCcchhhcccchhhcccceee
Confidence 12458899999999999997 99998766655543333
No 35
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.85 E-value=2.2e-20 Score=190.65 Aligned_cols=224 Identities=18% Similarity=0.219 Sum_probs=184.5
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHH----HhcCCC--CcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeee-CC
Q 015838 137 QHVVEIKTPDQIERMRETCRIAREVLDAAA----RMIRPG--VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT-SV 209 (399)
Q Consensus 137 ~~~r~iKs~~EIe~~R~A~~ia~~~l~~~~----~~i~pG--vTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~-g~ 209 (399)
..++++|+++|++.||.+----..++-+.+ ..+..| +||.+++..+++.=.++..+-. ..|+++..+ |.
T Consensus 302 ~~~kAiKN~~E~~gmr~shirD~~Alve~~~wle~~~~~g~~itE~~~A~kle~fR~~~~~fmg----lSFeTIS~s~G~ 377 (606)
T KOG2413|consen 302 SRAKAIKNDDELKGMRNSHIRDGAALVEYFAWLEKELHKGYTITEYDAADKLEEFRSRQDHFMG----LSFETISSSVGP 377 (606)
T ss_pred HHHHHhcChHHhhhhhhcchhhHHHHHHHHHHHhhhhhcCcccchhhHHHHHHHHHHhhccccC----cCcceeeccCCC
Confidence 446789999999999987654444554444 345567 8999999999887766655533 359998866 99
Q ss_pred CCccccCCCC---CCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHH
Q 015838 210 NEVICHGIPD---SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKP-GVRFREIG 285 (399)
Q Consensus 210 n~~~~Hg~p~---~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkP-G~~~~eI~ 285 (399)
|..+.|+.|. ++.+.+-.+.++|-|+.|.-=.+|++||+.+|+|+++.++.|..++...-+...++-| |.....+.
T Consensus 378 NgAviHYsP~~e~n~~i~~~kiyL~DSGaQY~DGTTDvTRT~HfgePs~eek~~yT~VLkGhi~la~~vFP~~t~g~~lD 457 (606)
T KOG2413|consen 378 NGAVIHYSPPAETNRIVSPDKIYLCDSGAQYLDGTTDVTRTVHFGEPTAEEKEAYTLVLKGHIALARAVFPKGTKGSVLD 457 (606)
T ss_pred CceeeecCCCccccceecCceEEEEccCcccccCccceeEEEecCCCCHHHHHHHHHHHHhhhHhhhcccCCCCCcchhH
Confidence 9999999996 4689999999999999986669999999999999999999999999999888887766 78888899
Q ss_pred HHHHHHHHHcCCcccccceeeccCC--ccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCC
Q 015838 286 EVINRHATMSGFSVVKSYCGHGIGE--LFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADG 363 (399)
Q Consensus 286 ~ai~~~~~~~G~~~~~~~~GHGIG~--~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g 363 (399)
..++..+.+.|+.+. |-+|||||. .+||+|....+..-.+...|++||++++||+.|. ||
T Consensus 458 ~laR~~LW~~gLDy~-HgTGHGVG~fLnVhE~P~~is~r~~~~~~~l~ag~~~s~EPGYY~-----------------dg 519 (606)
T KOG2413|consen 458 ALARSALWKAGLDYG-HGTGHGVGSFLNVHEGPIGIGYRPYSSNFPLQAGMVFSIEPGYYK-----------------DG 519 (606)
T ss_pred HHHHHHHHhhccccC-CCCCcccccceEeccCCceeeeeecCCCchhcCceEeccCCcccc-----------------cC
Confidence 999999999998875 449999994 6899997665542344568999999999998886 69
Q ss_pred eeeEEEEEEEEEeCCCeee
Q 015838 364 KRSAQFEHTLLVTETGVEV 382 (399)
Q Consensus 364 ~~~~~~EdtvlVTe~G~Ei 382 (399)
.+|+|+|+.++|.+.+...
T Consensus 520 ~fGIRienv~~vvd~~~~~ 538 (606)
T KOG2413|consen 520 EFGIRIENVVEVVDAGTKH 538 (606)
T ss_pred cceEEEeeEEEEEeccccc
Confidence 9999999999998776444
No 36
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=99.80 E-value=9.9e-19 Score=164.96 Aligned_cols=234 Identities=24% Similarity=0.315 Sum_probs=189.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----HcCCCCCCCCCCCCCceeeeCCCCccccCCC
Q 015838 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATI----TAGGYPSPLNYHFFPKSCCTSVNEVICHGIP 218 (399)
Q Consensus 143 Ks~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~----~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p 218 (399)
...+...-+|+|+++.+++-..+.+.|+||||..||...++...+ +.|.. +..+||. ..|.|.+..|+.|
T Consensus 80 ~~~~i~~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li~e~gl~----aGi~FPt--G~SlN~cAAHyTp 153 (397)
T KOG2775|consen 80 TESDIYQDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLILENGLN----AGIGFPT--GCSLNHCAAHYTP 153 (397)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHhcccc----ccccCCC--cccccchhhhcCC
Confidence 445667889999999999999999999999999999998876544 33333 2467985 4578999999999
Q ss_pred C---CCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHc
Q 015838 219 D---SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMS 295 (399)
Q Consensus 219 ~---~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~ 295 (399)
+ ..+|+.+|+..||+|.+.+|-..|.+.|+.+ ++....|+.+++++-..+|+...-.++..||+++|+++++.+
T Consensus 154 NaGd~tVLqydDV~KiDfGthi~GrIiDsAFTv~F---~p~~d~Ll~AvreaT~tGIkeaGiDvRlcdiG~aiqEVmeSy 230 (397)
T KOG2775|consen 154 NAGDKTVLKYDDVMKIDFGTHIDGRIIDSAFTVAF---NPKYDPLLAAVREATNTGIKEAGIDVRLCDIGEAIQEVMESY 230 (397)
T ss_pred CCCCceeeeecceEEEeccccccCeEeeeeeEEee---CccccHHHHHHHHHHhhhhhhcCceeeehhhhHHHHHHhhhe
Confidence 5 4689999999999999999999999999998 456777999999999999999999999999999999999987
Q ss_pred CCc---------ccccceeeccCC-ccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccc------cCC------
Q 015838 296 GFS---------VVKSYCGHGIGE-LFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDR------MWP------ 353 (399)
Q Consensus 296 G~~---------~~~~~~GHGIG~-~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~------~wp------ 353 (399)
-.. .+++++||+|+. .+|..-.+|.. +++....|++|..|+||..-+.|..-+. .+.
T Consensus 231 EvEi~Gk~~~VKpIrnLnGHSI~~yrIH~gksVPiV-kgge~trmee~e~yAIETFgSTGkG~v~ddmecSHymkn~~~~ 309 (397)
T KOG2775|consen 231 EVEINGKTYQVKPIRNLNGHSIAQYRIHGGKSVPIV-KGGEQTRMEEGEIYAIETFGSTGKGYVHDDMECSHYMKNFELG 309 (397)
T ss_pred EEEeCCceecceeccccCCCcccceEeecCccccee-cCCcceeecCCeeEEEEeeccCCcceecCCcccchhhhhcccc
Confidence 532 367899999996 46766666643 3567789999999999987766653111 111
Q ss_pred -----------------CCce-----------------------------------EEeeCCeeeEEEEEEEEEeCCCee
Q 015838 354 -----------------DGWT-----------------------------------AVTADGKRSAQFEHTLLVTETGVE 381 (399)
Q Consensus 354 -----------------D~wt-----------------------------------~~t~~g~~~~~~EdtvlVTe~G~E 381 (399)
++|. +...+|.+.+|||||||..+.+.|
T Consensus 310 ~vplrl~~~K~ll~~I~knfgTLaFcrR~lDrlGetKyLmAlk~Lc~~Giv~pyPPLcDi~G~ytAQfEHTIll~pt~KE 389 (397)
T KOG2775|consen 310 HVPLRLQRSKGLLNTIDKNFGTLAFCRRWLDRLGETKYLMALKNLCDMGIVQPYPPLCDIKGSYTAQFEHTILLSPTGKE 389 (397)
T ss_pred ccccccHHHHHHHHHHhhccccccccHHHHHHhhhHHHHHHHHhhhhcccccCCCcccccCcceeeeeceeeEecchhcc
Confidence 1110 033579999999999999999999
Q ss_pred eccCC
Q 015838 382 VLTAR 386 (399)
Q Consensus 382 iLT~~ 386 (399)
|+|+.
T Consensus 390 VvsrG 394 (397)
T KOG2775|consen 390 VVSRG 394 (397)
T ss_pred hhccc
Confidence 99864
No 37
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=99.70 E-value=1.9e-16 Score=161.36 Aligned_cols=244 Identities=14% Similarity=0.188 Sum_probs=180.0
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHH---hcCCC---CcHHHHHHHHHHHHH----------HcCCCCCCCCCC
Q 015838 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAAR---MIRPG---VTTDEIDRVVHEATI----------TAGGYPSPLNYH 199 (399)
Q Consensus 136 ~~~~r~iKs~~EIe~~R~A~~ia~~~l~~~~~---~i~pG---vTe~Ei~~~v~~~~~----------~~G~~ps~l~~~ 199 (399)
+..+..+|+.+||+.+|.+++.....|..... .+..| +|...+...+...+- +.|-....+--+
T Consensus 164 Lsk~~~~KD~~E~an~~~ss~~s~~~M~~~~~em~~~~D~~~kit~~KlsD~mes~iddv~f~q~~s~~l~~~~~d~lew 243 (1001)
T COG5406 164 LSKMFLTKDAEEIANCRASSAASSVLMRYFVKEMEMLWDGAFKITHGKLSDLMESLIDDVEFFQTKSLKLGDIDLDQLEW 243 (1001)
T ss_pred hhHHhccccHHHHhhccccchHHHHHHHHHHHHHHHHHhhhhhhccchHHHHhhhhcchhhhhhhcCccccccchhhhhh
Confidence 35677999999999999999999988884332 22222 344444444433221 112111111124
Q ss_pred CCCceeeeCCC-CccccCCCCCCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 015838 200 FFPKSCCTSVN-EVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPG 278 (399)
Q Consensus 200 ~fp~~v~~g~n-~~~~Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG 278 (399)
.|.+++.+|.. ...+..+..++.|- ||.|.+.+|.+|+|||++++|||++ +|+.++++.|+.++.+|...+..+|||
T Consensus 244 ~ytpiiqsg~~~Dl~psa~s~~~~l~-gd~vl~s~GiRYn~YCSn~~RT~l~-dp~~e~~~Ny~fl~~lQk~i~~~~rpG 321 (1001)
T COG5406 244 CYTPIIQSGGSIDLTPSAFSFPMELT-GDVVLLSIGIRYNGYCSNMSRTILT-DPDSEQQKNYEFLYMLQKYILGLVRPG 321 (1001)
T ss_pred hcchhhccCceeecccccccCchhhc-CceEEEEeeeeeccccccccceEEe-CCchHhhhhHHHHHHHHHHHHhhcCCC
Confidence 57778888765 44455556666774 8999999999999999999999999 689999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHcCCcccccc---eeeccCCccccCCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCC
Q 015838 279 VRFREIGEVINRHATMSGFSVVKSY---CGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDG 355 (399)
Q Consensus 279 ~~~~eI~~ai~~~~~~~G~~~~~~~---~GHGIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~ 355 (399)
....+||..+.+++++.|.....+| .|-+||+.|++.-.+.+. +++++|+.||+|.|.-++..-.. .-|
T Consensus 322 ~~~g~iY~~~~~yi~~~~pel~pnF~~nvG~~igiefR~s~~~~nv---kn~r~lq~g~~fnis~gf~nl~~---~~~-- 393 (1001)
T COG5406 322 TDSGIIYSEAEKYISSNGPELGPNFIYNVGLMIGIEFRSSQKPFNV---KNGRVLQAGCIFNISLGFGNLIN---PHP-- 393 (1001)
T ss_pred CCchhHHHHHHHHHHhcCCccCchHhhhhhhhccccccccccceec---cCCceeccccEEEEeecccccCC---CCc--
Confidence 9999999999999999998765544 799999999887554432 34589999999999887654211 011
Q ss_pred ceEEeeCCeeeEEEEEEEEEeCCCeeeccCCCCCCCCcccc
Q 015838 356 WTAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSPKVYPW 396 (399)
Q Consensus 356 wt~~t~~g~~~~~~EdtvlVTe~G~EiLT~~~~~~~~~~~~ 396 (399)
...+.+++-||+-|+-+-+.++|..+.- ...+.|
T Consensus 394 ------~Nnyal~l~dt~qi~ls~p~~~t~~~ka-q~~isf 427 (1001)
T COG5406 394 ------KNNYALLLIDTEQISLSNPIVFTDSPKA-QGDISF 427 (1001)
T ss_pred ------ccchhhhhccceEeecCCceecccCccc-ccceeE
Confidence 2447789999999998889999987443 333444
No 38
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=99.70 E-value=1.1e-15 Score=147.64 Aligned_cols=244 Identities=21% Similarity=0.288 Sum_probs=182.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC--CCCC---CCCCCCCCceeeeCCCCcccc
Q 015838 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAG--GYPS---PLNYHFFPKSCCTSVNEVICH 215 (399)
Q Consensus 141 ~iKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G--~~ps---~l~~~~fp~~v~~g~n~~~~H 215 (399)
.|-++.-+..+|-|++|+..+|..+.+.+.||++..||...-...+.+.- .|-. .-...+||+ |+++|+.+||
T Consensus 14 tia~~~vvtKYk~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfPT--~Isvnncv~h 91 (398)
T KOG2776|consen 14 TIANDSVVTKYKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDFEKGIAFPT--SISVNNCVCH 91 (398)
T ss_pred ccccHHHHhhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHhhhHHHHHHHHHHHhhhhhhhccccccc--eecccceeec
Confidence 56678899999999999999999999999999999999877766665431 1211 112356884 6689999999
Q ss_pred CCCC----CCcCCCCCeEEEEEeeEeCCEEeceeeEEEeCC-----CCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHH
Q 015838 216 GIPD----SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN-----ADEASRQLVQCTYECLEKAISIVKPGVRFREIGE 286 (399)
Q Consensus 216 g~p~----~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~-----~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ 286 (399)
..|- +..|++||+|.||+|++++||.+.++.|++|+. ++....+++.++..|.+++++.+|||.+-..|-+
T Consensus 92 ~sPlksd~~~~Lk~GDvVKIdLG~HiDGfiA~vaHT~VV~~~~~~~vtG~kADvI~AAh~A~eaa~rllkpgn~n~~vT~ 171 (398)
T KOG2776|consen 92 FSPLKSDADYTLKEGDVVKIDLGVHIDGFIALVAHTIVVGPAPDTPVTGRKADVIAAAHLAAEAALRLLKPGNTNTQVTR 171 (398)
T ss_pred cCcCCCCCcccccCCCEEEEEeeeeeccceeeeeeeEEeccCCCCcccCchhHHHHHHHHHHHHHHHHhCCCCCCchhhH
Confidence 9982 578999999999999999999999999999984 4467889999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccceeeccCCcccc-CCCCCCCC-----CCCCCceecCCcEEEEccccccCCcccccCCCC-ceE-
Q 015838 287 VINRHATMSGFSVVKSYCGHGIGELFHC-APNIPHYS-----RNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDG-WTA- 358 (399)
Q Consensus 287 ai~~~~~~~G~~~~~~~~GHGIG~~~he-~P~i~~~~-----~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~-wt~- 358 (399)
+|.+.+.++++..+.+...|-.=..+-. .+.|.... +.-....++.+.|+++.-..+.|......-++. -|+
T Consensus 172 ~i~k~aas~~c~pVegmlshql~~~~idGeKtIi~n~sdqq~~~~e~~~fe~~Evya~Di~~stg~~~~K~~~~~~~t~y 251 (398)
T KOG2776|consen 172 AIVKTAASYGCKPVEGMLSHQLKQHVIDGEKTIIQNPSDQQKKEHEKTEFEEHEVYAIDILVSTGEGSPKEGDDRAPTIY 251 (398)
T ss_pred HHHHHHHHhCCcccccchhHHHHhhhhcCCceEecCcchhhhccccccccccceeEEEEEEEecCCCcccccccccceeE
Confidence 9999999999876555455544433321 12221110 111234677777777776555554322211111 000
Q ss_pred -------------------------------------------------------------EeeCCeeeEEEEEEEEEeC
Q 015838 359 -------------------------------------------------------------VTADGKRSAQFEHTLLVTE 377 (399)
Q Consensus 359 -------------------------------------------------------------~t~~g~~~~~~EdtvlVTe 377 (399)
...+|...+||+.|||+..
T Consensus 252 ~kd~~~~y~LKlKaSR~~~seI~k~~g~~PF~~rs~~~e~r~rmGl~Ec~~~~ll~p~pVl~~kp~~~vaqfk~TvllmP 331 (398)
T KOG2776|consen 252 YKDESVSYMLKLKASRALLSEIKKKFGVMPFTLRSLEEEFRARLGLVECTNHGLLVPYPVLYEKPGEFVAQFKFTVLLMP 331 (398)
T ss_pred EeccchHHHHHHHHHHHHHHHHHhhcCcccccccchhhHHHhhhhhHHhccCccccccceeecCCcchhhheeeEEEecc
Confidence 3457888999999999999
Q ss_pred CCeeeccCC
Q 015838 378 TGVEVLTAR 386 (399)
Q Consensus 378 ~G~EiLT~~ 386 (399)
+|.-.||..
T Consensus 332 ng~~~l~~~ 340 (398)
T KOG2776|consen 332 NGSLRLTGS 340 (398)
T ss_pred CCCccccCC
Confidence 999999874
No 39
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.36 E-value=3.7e-13 Score=141.78 Aligned_cols=49 Identities=35% Similarity=0.807 Sum_probs=43.3
Q ss_pred cccc-cCCccccccchhhccCCCCCCccccChhHhhhhhHHHHHhhhhhc
Q 015838 14 SCVR-CGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAK 62 (399)
Q Consensus 14 ~c~~-c~~~~~l~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h~~~~ 62 (399)
.|.. =+|+|+||||+|+|+|+++..||||||+|||.+|++||.+|+.+.
T Consensus 64 ~c~~h~~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~ 113 (606)
T PLN03144 64 VCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWRHHRVLHERAA 113 (606)
T ss_pred eEeecCCCcccccCccchhcCCCcCcceeeCHHHHHHHHHHHHHHHHHhh
Confidence 3544 478999999999999998778999999999999999999998654
No 40
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=97.88 E-value=5.5e-06 Score=55.55 Aligned_cols=35 Identities=40% Similarity=1.113 Sum_probs=29.7
Q ss_pred ccccCCccccccchhhccCCCCCCccccChhHhhhhhHHHHH
Q 015838 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKS 56 (399)
Q Consensus 15 c~~c~~~~~l~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~ 56 (399)
|..|++++...|+.|.. .+|||.+|.+.+|..||.
T Consensus 1 C~~C~~~~~~~C~~C~~-------~~YCs~~Cq~~~w~~Hk~ 35 (37)
T PF01753_consen 1 CAVCGKPALKRCSRCKS-------VYYCSEECQRADWPYHKF 35 (37)
T ss_dssp -TTTSSCSSEEETTTSS-------SEESSHHHHHHHHHHHCC
T ss_pred CcCCCCCcCCcCCCCCC-------EEecCHHHHHHHHHHHhh
Confidence 66799988889999953 489999999999999975
No 41
>PLN03158 methionine aminopeptidase; Provisional
Probab=97.50 E-value=0.00071 Score=69.01 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=81.8
Q ss_pred EEeceeeEEEeCCCC--HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCC-cccccceeec--cCCcccc
Q 015838 240 VHGDLNETYFVGNAD--EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF-SVVKSYCGHG--IGELFHC 314 (399)
Q Consensus 240 Y~~D~~RT~~vG~~~--~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~-~~~~~~~GHG--IG~~~he 314 (399)
.++++.++..|..+. +.+|++.+.+.++++++++.+|||++-.||..++++.+.++|. ....++.+.. +....
T Consensus 127 ~~~~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a~~~irpGvTe~EI~~~v~~~~~~~Ga~ps~l~y~~fp~svcts~-- 204 (396)
T PLN03158 127 PNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSV-- 204 (396)
T ss_pred cccccccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCccccccccCCCceeeecc--
Confidence 356777888887655 5678889999999999999999999999999999999888763 3222221111 11111
Q ss_pred CCCCCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeC
Q 015838 315 APNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTE 377 (399)
Q Consensus 315 ~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe 377 (399)
...+.|+. .++.+|++|+++.|+.+.+. +|. .+.+..|++|.+
T Consensus 205 N~~i~Hgi--p~~r~L~~GDiV~iDvg~~~-----------------~GY-~aD~tRT~~VG~ 247 (396)
T PLN03158 205 NEVICHGI--PDARKLEDGDIVNVDVTVYY-----------------KGC-HGDLNETFFVGN 247 (396)
T ss_pred cccccCCC--CCCccCCCCCEEEEEEeEEE-----------------CCE-EEeEEeEEEcCC
Confidence 12344542 23468999999999987765 454 458899999964
No 42
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=97.43 E-value=0.0014 Score=61.91 Aligned_cols=103 Identities=21% Similarity=0.265 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCcccc-cceeeccCCccccCCCCCCCCCCCCCceecCC
Q 015838 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVK-SYCGHGIGELFHCAPNIPHYSRNKAVGVMKVG 333 (399)
Q Consensus 255 ~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~~~-~~~GHGIG~~~he~P~i~~~~~~~~~~~l~~G 333 (399)
+.+|++.+.+.++++++++.++||++-.||..++.+.+.++|..... .+.++...........++|+. ..+.+|++|
T Consensus 2 ~~lr~A~~i~~~~~~~~~~~~~pG~tE~ev~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~h~~--~~~~~l~~G 79 (238)
T cd01086 2 EGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICTSVNEVVCHGI--PDDRVLKDG 79 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCcceecCCCCceeCCC--CCCcccCCC
Confidence 45789999999999999999999999999999999999999974211 111110000000011234432 235689999
Q ss_pred cEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeC
Q 015838 334 QTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTE 377 (399)
Q Consensus 334 mvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe 377 (399)
+++.++.+... +| +.+.+..|+.|.+
T Consensus 80 d~v~id~g~~~-----------------~G-Y~ad~~RT~~~G~ 105 (238)
T cd01086 80 DIVNIDVGVEL-----------------DG-YHGDSARTFIVGE 105 (238)
T ss_pred CEEEEEEEEEE-----------------CC-EEEEEEEEEECCC
Confidence 99999997654 34 4568999999964
No 43
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=97.40 E-value=0.0027 Score=57.43 Aligned_cols=102 Identities=25% Similarity=0.289 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCCCCcCCCCCe
Q 015838 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDI 228 (399)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDi 228 (399)
+.+|++.+.+.++++.+.+.++||++..||...+.+.+.+.|.........+. .+.....+...-...++.+|++|.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~~~g~~~~~~~~~Gh--~iG~~~~e~~~~~~~~~~~l~~gmv 179 (207)
T cd01066 102 DEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGH--GIGLEIHEPPVLKAGDDTVLEPGMV 179 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCccccCCCCCcc--ccCcccCCCCCcCCCCCCCcCCCCE
Confidence 57888999999999999999999999999999999999998864211111111 1222111111111124679999999
Q ss_pred EEEEEeeEeC-CEEeceeeEEEeCC
Q 015838 229 VNIDVTVYYK-GVHGDLNETYFVGN 252 (399)
Q Consensus 229 V~iD~g~~~~-GY~~D~~RT~~vG~ 252 (399)
+.|+.+.+.. ++..-+..|++|.+
T Consensus 180 ~~iep~~~~~~~~g~~~ed~v~vt~ 204 (207)
T cd01066 180 FAVEPGLYLPGGGGVRIEDTVLVTE 204 (207)
T ss_pred EEECCEEEECCCcEEEeeeEEEEeC
Confidence 9999999977 58888999999853
No 44
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=97.32 E-value=8.4e-05 Score=71.19 Aligned_cols=40 Identities=38% Similarity=0.917 Sum_probs=34.9
Q ss_pred ccccccCCccc-cccchhhccCCCCCCccccChhHhhhhhHHHHHhhh
Q 015838 13 LSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHL 59 (399)
Q Consensus 13 ~~c~~c~~~~~-l~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h~ 59 (399)
..|++||.+.. .+|..|+.. -||+|+|.|-.|-.||++.+
T Consensus 320 ~fCstCG~~ga~KrCs~CKav-------~YCdqeCQk~hWf~HKK~C~ 360 (396)
T KOG1710|consen 320 QFCSTCGHPGAKKRCSQCKAV-------AYCDQECQKFHWFIHKKVCS 360 (396)
T ss_pred ccccccCCCCccchhhhhHHH-------HHHHHHHHHhhhHHHHHHHH
Confidence 45888998764 999999865 58999999999999999886
No 45
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=97.17 E-value=0.0054 Score=56.20 Aligned_cols=101 Identities=22% Similarity=0.302 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCCCCcCCCCCe
Q 015838 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDI 228 (399)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDi 228 (399)
+.+|++.+.+.++++.+.+.++||++-.||.+.+++.+.+.|..+......++ .+.....+...-...++++|++|.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~~~g~~~~~~~~~Gh--~iG~~~~e~p~i~~~~~~~l~~gmv 180 (208)
T cd01092 103 DELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGEYFIHRTGH--GVGLEVHEAPYISPGSDDVLEEGMV 180 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCccccCCCCCcc--ccCcccCcCCCcCCCCCCCcCCCCE
Confidence 46678888999999999999999999999999999999998864321111111 1111111110001124689999999
Q ss_pred EEEEEeeEeCCE-EeceeeEEEeC
Q 015838 229 VNIDVTVYYKGV-HGDLNETYFVG 251 (399)
Q Consensus 229 V~iD~g~~~~GY-~~D~~RT~~vG 251 (399)
+.|+.+.+..|+ -.-+..|++|.
T Consensus 181 ~~iep~~~~~~~~g~~~ed~v~vt 204 (208)
T cd01092 181 FTIEPGIYIPGKGGVRIEDDVLVT 204 (208)
T ss_pred EEECCeEEecCCCEEEeeeEEEEC
Confidence 999998876554 34467788874
No 46
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=97.11 E-value=0.0037 Score=61.23 Aligned_cols=98 Identities=21% Similarity=0.247 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCcccccceeeccCCccccCCCCCCCCCC-CCCceecCC
Q 015838 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRN-KAVGVMKVG 333 (399)
Q Consensus 255 ~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~~~~~~GHGIG~~~he~P~i~~~~~~-~~~~~l~~G 333 (399)
+.++++.+.+.++++++++.++||++..||.+.+++.+.+.|.. .++.+++... ...+||..+ +++.+|++|
T Consensus 2 ~~~r~Aa~I~~~a~~~~~~~i~pG~te~ei~~~~~~~i~~~G~~-----~afp~~is~n--~~~~H~~p~~~d~~~l~~G 74 (291)
T cd01088 2 EKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAG-----PAFPVNLSIN--ECAAHYTPNAGDDTVLKEG 74 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCCC-----CCCCceeccC--CEeeCCCCCCCCCcccCCC
Confidence 35788999999999999999999999999999999999999843 2222333222 234455433 345789999
Q ss_pred cEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeC
Q 015838 334 QTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTE 377 (399)
Q Consensus 334 mvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe 377 (399)
+++.|+.+... +| +.+-+..|+.|.+
T Consensus 75 DvV~iD~G~~~-----------------dG-Y~sD~arT~~vg~ 100 (291)
T cd01088 75 DVVKLDFGAHV-----------------DG-YIADSAFTVDFDP 100 (291)
T ss_pred CEEEEEEEEEE-----------------CC-EEEEEEEEEecCh
Confidence 99999997654 34 3556777877754
No 47
>PRK05716 methionine aminopeptidase; Validated
Probab=96.91 E-value=0.011 Score=56.19 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCC--ccccC-C-CCCCcCCC
Q 015838 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE--VICHG-I-PDSRKLED 225 (399)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~--~~~Hg-~-p~~r~L~~ 225 (399)
..|++.+.+.++++++.+.++||++-.||.+.+++.+.+.|..+. .++.++. +.....+ .+.++ . .++.+|++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~~~~~~~~~g~~~~-~~~~GHg--iG~~~~e~p~~~~~~~~~~~~~le~ 195 (252)
T PRK05716 119 EDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVV-REYCGHG--IGRKFHEEPQIPHYGAPGDGPVLKE 195 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeee-cCccccc--cCCccCCCCccCcCCCCCCCCEecC
Confidence 456777788899999999999999999999999999999887542 2222222 2222111 11111 1 24678999
Q ss_pred CCeEEEEEeeEe------------------CCEEeceeeEEEeCC
Q 015838 226 GDIVNIDVTVYY------------------KGVHGDLNETYFVGN 252 (399)
Q Consensus 226 GDiV~iD~g~~~------------------~GY~~D~~RT~~vG~ 252 (399)
|.++.|+.+.+. +++-.-+..|++|.+
T Consensus 196 Gmv~~vEp~i~~~~~~~~~~~~~~~~~~~~g~~g~~~ed~v~Vt~ 240 (252)
T PRK05716 196 GMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTE 240 (252)
T ss_pred CCEEEEccEEEcCCCceEEcCCCCEEEccCCCcEEeeeeEEEEcC
Confidence 999999988874 335566778888864
No 48
>PRK12896 methionine aminopeptidase; Reviewed
Probab=96.89 E-value=0.007 Score=57.65 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=74.4
Q ss_pred eeEEEeCCCCH--HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCcccc-cceee----ccCCccccCCC
Q 015838 245 NETYFVGNADE--ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVK-SYCGH----GIGELFHCAPN 317 (399)
Q Consensus 245 ~RT~~vG~~~~--~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~~~-~~~GH----GIG~~~he~P~ 317 (399)
.|++.|-.+.+ .+|++.+.+.++++++++.++||++-.||...+...+.+.|..... .+.+. ..|.. ..
T Consensus 5 ~~~~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~i~pG~te~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n----~~ 80 (255)
T PRK12896 5 GRGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEGYYGFPGSTCISVN----EE 80 (255)
T ss_pred CCceeECCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHCCCEeCcccCCCCCcceEecCC----Ce
Confidence 57777854433 5667888888899999999999999999999999999998865211 01111 11111 11
Q ss_pred CCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeC
Q 015838 318 IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTE 377 (399)
Q Consensus 318 i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe 377 (399)
++|+. ..+.+|++|+++.++.+... +| +.+.+.-|++|.+
T Consensus 81 ~~h~~--p~~~~l~~Gd~v~iD~g~~~-----------------~g-Y~aD~~RT~~vG~ 120 (255)
T PRK12896 81 VAHGI--PGPRVIKDGDLVNIDVSAYL-----------------DG-YHGDTGITFAVGP 120 (255)
T ss_pred eEecC--CCCccCCCCCEEEEEEeEEE-----------------Cc-EEEeeEEEEECCC
Confidence 23432 13368999999999987654 23 4567788888753
No 49
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=96.74 E-value=0.022 Score=54.06 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCc--cccC--CCCCCcCCC
Q 015838 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHG--IPDSRKLED 225 (399)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~--~~Hg--~p~~r~L~~ 225 (399)
..|++..++.++++.+.+.++||++-.||...+.+.+.+.|..+. ..+.++ .+.....+. +..+ ..++.+|++
T Consensus 117 ~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~g~~~~-~~~~GH--giG~~~~e~p~i~~~~~~~~~~~l~~ 193 (247)
T TIGR00500 117 EAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVV-REYCGH--GIGRKFHEEPQIPNYGKKFTNVRLKE 193 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec-cCccCC--ccCcccCCCCccCCcCcCCCCCEecC
Confidence 456777788899999999999999999999999999999886542 122222 222222221 1111 123678999
Q ss_pred CCeEEEEEeeEe------------------CCEEeceeeEEEeCC
Q 015838 226 GDIVNIDVTVYY------------------KGVHGDLNETYFVGN 252 (399)
Q Consensus 226 GDiV~iD~g~~~------------------~GY~~D~~RT~~vG~ 252 (399)
|.++.|+.+.+. +++-.-+..|++|.+
T Consensus 194 gmv~~iEp~i~~~~~~~~~~~~~~~~~~~~~~~g~ried~v~Vt~ 238 (247)
T TIGR00500 194 GMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITD 238 (247)
T ss_pred CCEEEEeeEEEcCCCcEEECCCCCEEEccCCCeEEEEeEEEEEcC
Confidence 999999998875 235556777888853
No 50
>PRK15173 peptidase; Provisional
Probab=96.69 E-value=0.02 Score=56.99 Aligned_cols=103 Identities=12% Similarity=0.101 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCCCCcCCCCCe
Q 015838 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDI 228 (399)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDi 228 (399)
+..|++.+++.++++.+++.++||++-.||...+.+.+.+.|.......+.+.......+..+.-.-...++.+|++|.+
T Consensus 202 ~~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~~~~G~~~~~~~~~GHGiG~~lg~~E~P~i~~~~~~~Le~GMV 281 (323)
T PRK15173 202 EITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFLGLEESPFVSTHATESFTSGMV 281 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCCCCCcCCCCCCcCCCCCCCCCCCCccCCCCE
Confidence 34577888899999999999999999999999999999998853221111111111111222211111124578999999
Q ss_pred EEEEEeeEeCC-EEeceeeEEEeC
Q 015838 229 VNIDVTVYYKG-VHGDLNETYFVG 251 (399)
Q Consensus 229 V~iD~g~~~~G-Y~~D~~RT~~vG 251 (399)
+.|+.+.+..| +-.-+..|++|.
T Consensus 282 ~tiEPgiy~~g~ggvriEDtvlVT 305 (323)
T PRK15173 282 LSLETPYYGYNLGSIMIEDMILIN 305 (323)
T ss_pred EEECCEEEcCCCcEEEEeeEEEEc
Confidence 99999987544 235678899985
No 51
>PRK09795 aminopeptidase; Provisional
Probab=96.60 E-value=0.032 Score=56.23 Aligned_cols=106 Identities=18% Similarity=0.190 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCCCCcC
Q 015838 144 TPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKL 223 (399)
Q Consensus 144 s~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L 223 (399)
.+++-+.+|++-+++.++.+++.++++||++-.||++.+.+.+.+.|.........++ .+.....+.-.....++.+|
T Consensus 235 ~~~~~~~~~~~~~~v~~a~~~~~~~~rpG~~~~~v~~~~~~~~~~~g~~~~~~h~~GH--giGl~~he~p~i~~~~~~~l 312 (361)
T PRK09795 235 VSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGHNTGH--AIGIEVHEDPRFSPRDTTTL 312 (361)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCccCCCCCCc--cCCccccCCCCcCCCCCCCc
Confidence 3555567889999999999999999999999999999999999988754321111111 12222211111111246899
Q ss_pred CCCCeEEEEEeeEeCCE-EeceeeEEEeC
Q 015838 224 EDGDIVNIDVTVYYKGV-HGDLNETYFVG 251 (399)
Q Consensus 224 ~~GDiV~iD~g~~~~GY-~~D~~RT~~vG 251 (399)
++|.++.|+.+.+..|. -.-+..|++|.
T Consensus 313 ~~gmv~~iEpgiy~~~~~gvriEd~v~vt 341 (361)
T PRK09795 313 QPGMLLTVEPGIYLPGQGGVRIEDVVLVT 341 (361)
T ss_pred CCCCEEEECCEEEeCCCCEEEEeeEEEEC
Confidence 99999999999987553 34567888884
No 52
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=96.58 E-value=0.033 Score=52.52 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccC------CCCCCcC
Q 015838 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG------IPDSRKL 223 (399)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg------~p~~r~L 223 (399)
..|++..++.++++++.++++||++-.||++.+.+.+.++|...... ..+...+.....+. +|+ .-++.+|
T Consensus 110 ~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~~G~~~~~~--~~~GHgiGl~~he~-~~~~g~~~~~~~~~~L 186 (228)
T cd01090 110 AHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHDLLRYRT--FGYGHSFGVLSHYY-GREAGLELREDIDTVL 186 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCcccc--cccCcccccccccC-CCccccccCCCCCCcc
Confidence 46778889999999999999999999999999999999988643211 11111222222221 111 1135889
Q ss_pred CCCCeEEEEEeeEeC----C-EEeceeeEEEeCC
Q 015838 224 EDGDIVNIDVTVYYK----G-VHGDLNETYFVGN 252 (399)
Q Consensus 224 ~~GDiV~iD~g~~~~----G-Y~~D~~RT~~vG~ 252 (399)
++|.++.|+-+.+.. | .---+..|++|.+
T Consensus 187 e~GMV~~iEP~i~~~~~~~g~gG~ried~v~Vt~ 220 (228)
T cd01090 187 EPGMVVSMEPMIMLPEGQPGAGGYREHDILVINE 220 (228)
T ss_pred CCCCEEEECCEEeecccCCCCcEEEeeeEEEECC
Confidence 999999999998862 2 1223788888853
No 53
>PRK14575 putative peptidase; Provisional
Probab=96.50 E-value=0.028 Score=57.62 Aligned_cols=99 Identities=11% Similarity=0.147 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceee--eCCCC--ccccCCCCCCcCCC
Q 015838 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNE--VICHGIPDSRKLED 225 (399)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~--~g~n~--~~~Hg~p~~r~L~~ 225 (399)
..|++.+++.++.+.++++++||++-.||++.+.+.+.+.|.......+ +...+. .|..+ .+.+ -++.+|++
T Consensus 286 ~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~a~~~~~~~~G~~~~~~~~--~GHGiG~~lg~~e~P~i~~--~~~~~Le~ 361 (406)
T PRK14575 286 ITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGH--LGHGNGVFLGLEESPFVST--HATESFTS 361 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCC--CCCcccCCCCCccCCCCCC--CCCCCcCC
Confidence 4567788889999999999999999999999999999888753321111 111222 12222 1111 24578999
Q ss_pred CCeEEEEEeeEeCC-EEeceeeEEEeCC
Q 015838 226 GDIVNIDVTVYYKG-VHGDLNETYFVGN 252 (399)
Q Consensus 226 GDiV~iD~g~~~~G-Y~~D~~RT~~vG~ 252 (399)
|.++.|..+.+..| +-.-+..|++|.+
T Consensus 362 GMv~tiEpgiy~~g~gGvriEDtvlVT~ 389 (406)
T PRK14575 362 GMVLSLETPYYGYNLGSIMIEDMILINK 389 (406)
T ss_pred CCEEEECCeeecCCCcEEEEEeEEEEcC
Confidence 99999999988654 3356789999953
No 54
>PRK12897 methionine aminopeptidase; Reviewed
Probab=96.48 E-value=0.025 Score=53.93 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCC--ccccCC-C-CCCcCCC
Q 015838 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE--VICHGI-P-DSRKLED 225 (399)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~--~~~Hg~-p-~~r~L~~ 225 (399)
..|++.+++.++++.+++.++||++..||++.+.+.+.+.|.... .++.++. +..+..+ .+.+.. + +..+|++
T Consensus 118 ~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~~a~~~~~~~~g~~~~-~~~~GHg--iGl~~hE~P~i~~~~~~~~~~~l~~ 194 (248)
T PRK12897 118 EAEKLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSVA-RDFTGHG--IGKEIHEEPAIFHFGKQGQGPELQE 194 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHcCCccC-CCeEECc--cCCcccCCCccCCCCCCCCCCCcCC
Confidence 356666888999999999999999999999999999998886432 2222221 2222222 112221 2 3468999
Q ss_pred CCeEEEEEeeEe-----------------CC-EEeceeeEEEeCC
Q 015838 226 GDIVNIDVTVYY-----------------KG-VHGDLNETYFVGN 252 (399)
Q Consensus 226 GDiV~iD~g~~~-----------------~G-Y~~D~~RT~~vG~ 252 (399)
|.++.+.-+.+. +| +-.-+..|++|.+
T Consensus 195 Gmv~tiEP~~~~~~~~~~~~~~~~~~~~~~g~~g~r~edtv~Vt~ 239 (248)
T PRK12897 195 GMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITK 239 (248)
T ss_pred CCEEEECCeEecCCCceEECCCCcEEEcCCCCeEeecceEEEEeC
Confidence 999999988872 34 5667788888853
No 55
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=96.46 E-value=0.027 Score=57.40 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCcc----ccCCC-CCCcCC
Q 015838 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVI----CHGIP-DSRKLE 224 (399)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~----~Hg~p-~~r~L~ 224 (399)
.+|++.+++.++.++++++++||+|-.||++.+.+.+.+.|... ....+++ +..+..... +.-.| ++.+|+
T Consensus 271 ~~~~~~~~~~~a~~~~i~~ikpG~~~~dv~~~~~~~~~~~G~~~--~h~~Ghg--iGl~~~~~~~e~~~~l~~~~~~~L~ 346 (391)
T TIGR02993 271 AFLDAEKAVLEGMEAGLEAAKPGNTCEDIANAFFAVLKKYGIHK--DSRTGYP--IGLSYPPDWGERTMSLRPGDNTVLK 346 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCcc--CCCceee--eccCcCCCCCCccccccCCCCceec
Confidence 46678889999999999999999999999999999999988643 1222332 211111000 00012 357899
Q ss_pred CCCeEEEEEeeEeCCEEeceeeEEEeC
Q 015838 225 DGDIVNIDVTVYYKGVHGDLNETYFVG 251 (399)
Q Consensus 225 ~GDiV~iD~g~~~~GY~~D~~RT~~vG 251 (399)
+|.++.|.-+.+..|+-.-+..|++|.
T Consensus 347 ~GMv~tvEpgiy~~~~Gvried~v~VT 373 (391)
T TIGR02993 347 PGMTFHFMTGLWMEDWGLEITESILIT 373 (391)
T ss_pred CCCEEEEcceeEeCCCCeEEeeEEEEC
Confidence 999999999999877666778899985
No 56
>PRK14576 putative endopeptidase; Provisional
Probab=96.39 E-value=0.04 Score=56.53 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceee--eCCCCccccCCCCCCcCCCCC
Q 015838 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNEVICHGIPDSRKLEDGD 227 (399)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~--~g~n~~~~Hg~p~~r~L~~GD 227 (399)
..|++-+++.+++++++++++||++-.||+..+.+.+.+.|.......+.++ .+. .+..+.-....-++.+|++|.
T Consensus 285 ~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~a~~~~~~~~G~~~~~~~~~GH--giG~~l~~~e~P~i~~~~~~~Le~GM 362 (405)
T PRK14576 285 LTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTSGLPHYNRGHLGH--GDGVFLGLEEVPFVSTQATETFCPGM 362 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCCCCC--CCCCCCCcCcCCCcCCCCCCccCCCC
Confidence 4667788889999999999999999999999999999998863321111111 222 222222111112467899999
Q ss_pred eEEEEEeeEeCC-EEeceeeEEEeC
Q 015838 228 IVNIDVTVYYKG-VHGDLNETYFVG 251 (399)
Q Consensus 228 iV~iD~g~~~~G-Y~~D~~RT~~vG 251 (399)
++.++.+.+..| .-.-+..|++|.
T Consensus 363 v~~vEp~~y~~g~ggvriEDtvlVT 387 (405)
T PRK14576 363 VLSLETPYYGIGVGSIMLEDMILIT 387 (405)
T ss_pred EEEECCceeecCCCEEEEeeEEEEC
Confidence 999998776544 234478899985
No 57
>PRK12318 methionine aminopeptidase; Provisional
Probab=96.28 E-value=0.046 Score=53.60 Aligned_cols=86 Identities=20% Similarity=0.245 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCc--cccCCC-CCCcCCCC
Q 015838 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHGIP-DSRKLEDG 226 (399)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~--~~Hg~p-~~r~L~~G 226 (399)
.+|++..++.++++.+.+.++||++..||++.+.+.+.+.|.... ..+.++ .+.....+. +.+..+ ++.+|++|
T Consensus 159 ~~~~~~~~~~~a~~~~i~~~rpG~~~~dv~~a~~~~~~~~G~~~~-~~~~GH--gIGl~~hE~P~i~~~~~~~~~~L~~G 235 (291)
T PRK12318 159 IKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVV-DQFVGH--GVGIKFHENPYVPHHRNSSKIPLAPG 235 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccC-CCcccC--CcCccccCCCcccCcCCCCCCEeCCC
Confidence 457788899999999999999999999999999999999886432 112222 122222221 112122 24689999
Q ss_pred CeEEEEEeeEeC
Q 015838 227 DIVNIDVTVYYK 238 (399)
Q Consensus 227 DiV~iD~g~~~~ 238 (399)
.++.|+-+.+..
T Consensus 236 MV~~iEP~i~~~ 247 (291)
T PRK12318 236 MIFTIEPMINVG 247 (291)
T ss_pred CEEEECCEEEcC
Confidence 999999888764
No 58
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=96.19 E-value=0.044 Score=52.27 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCce----eeeCCCCccccCCC-CCCcC
Q 015838 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKS----CCTSVNEVICHGIP-DSRKL 223 (399)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~----v~~g~n~~~~Hg~p-~~r~L 223 (399)
+..|++.+++.++.+++.++++||++-.||.+.+.+.+.+.+..-. ..|++. +.....+....-.+ ++++|
T Consensus 119 ~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~~~~~~~~----~~~~~~~GHgiGle~hE~~~~l~~~~~~~L 194 (243)
T cd01091 119 SEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKKKPELE----PNFTKNLGFGIGLEFRESSLIINAKNDRKL 194 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhChhHH----HhCcCCcccccCcccccCccccCCCCCCCc
Confidence 4567788899999999999999999999999999998887652111 012222 22222221111112 35889
Q ss_pred CCCCeEEEEEeeE-e----------CCEEeceeeEEEeCC
Q 015838 224 EDGDIVNIDVTVY-Y----------KGVHGDLNETYFVGN 252 (399)
Q Consensus 224 ~~GDiV~iD~g~~-~----------~GY~~D~~RT~~vG~ 252 (399)
++|.++.|..|.+ . ..|-.-+..|++|.+
T Consensus 195 ~~GMvf~vepGi~~~~~~~~~~~~~~~~gv~ieDtV~Vt~ 234 (243)
T cd01091 195 KKGMVFNLSIGFSNLQNPEPKDKESKTYALLLSDTILVTE 234 (243)
T ss_pred CCCCEEEEeCCcccccCccccCccCCeeEEEEEEEEEEcC
Confidence 9999999999987 3 257778899999954
No 59
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.041 Score=52.81 Aligned_cols=87 Identities=22% Similarity=0.233 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCc-cccccee--eccCCccccCCCCCCCCCCCCCceec
Q 015838 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFS-VVKSYCG--HGIGELFHCAPNIPHYSRNKAVGVMK 331 (399)
Q Consensus 255 ~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~-~~~~~~G--HGIG~~~he~P~i~~~~~~~~~~~l~ 331 (399)
+.+|++-+.+.++++++.+.++||++..||.+.++++++++|.- ...++-| -.+.+.+.+ .+.|+..+ +..+|+
T Consensus 12 ek~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe--~v~HgiP~-d~~vlk 88 (255)
T COG0024 12 EKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNE--VVAHGIPG-DKKVLK 88 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehhh--eeeecCCC-CCcccC
Confidence 34666777788899999999999999999999999999986642 2222222 222222211 12333323 567999
Q ss_pred CCcEEEEcccccc
Q 015838 332 VGQTFTIEPMINA 344 (399)
Q Consensus 332 ~GmvftIEP~i~~ 344 (399)
+|.++.|.-++..
T Consensus 89 ~GDiv~IDvg~~~ 101 (255)
T COG0024 89 EGDIVKIDVGAHI 101 (255)
T ss_pred CCCEEEEEEEEEE
Confidence 9999999987765
No 60
>PRK07281 methionine aminopeptidase; Reviewed
Probab=96.11 E-value=0.056 Score=52.91 Aligned_cols=85 Identities=11% Similarity=0.126 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCc--cccC-CC-CCCcCCC
Q 015838 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHG-IP-DSRKLED 225 (399)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~--~~Hg-~p-~~r~L~~ 225 (399)
..|++.+++.++++++++.++||++-.||++.+.+.+.++|... ..++.++ .+.....+. +.+. .+ .+.+|++
T Consensus 149 ~~~~l~~~~~ea~~~ai~~~kpG~~~~di~~a~~~~~~~~G~~~-~~~~~GH--GIGl~~hE~P~i~~~~~~~~~~~Le~ 225 (286)
T PRK07281 149 EVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRGYGV-VRDLVGH--GVGPTMHEEPMVPNYGTAGRGLRLRE 225 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-CCCeeee--eCCCccCCCCcCCCcccCCCCCEECC
Confidence 36788999999999999999999999999999999998877532 1122222 122222221 1221 12 3468999
Q ss_pred CCeEEEEEeeEe
Q 015838 226 GDIVNIDVTVYY 237 (399)
Q Consensus 226 GDiV~iD~g~~~ 237 (399)
|.++.|..+++.
T Consensus 226 GMV~tiEPgiy~ 237 (286)
T PRK07281 226 GMVLTIEPMINT 237 (286)
T ss_pred CCEEEECCeeEc
Confidence 999999999875
No 61
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=96.10 E-value=0.064 Score=50.75 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC----CCC------------CCCCCCCCCceeeeCCCCcc
Q 015838 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAG----GYP------------SPLNYHFFPKSCCTSVNEVI 213 (399)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G----~~p------------s~l~~~~fp~~v~~g~n~~~ 213 (399)
..|++...+.++++.+.+.++||++-.||.+.+.+.+.+.+ ..+ .......+...+.....+..
T Consensus 104 ~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~GhgiGl~~~e~p 183 (243)
T cd01087 104 EQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDVHDVG 183 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcCcccCchHhhhhhhhhhhhcCCCCccccCcccccCc
Confidence 45677788899999999999999999999999988887653 211 00000111112222222211
Q ss_pred cc--CCCCCCcCCCCCeEEEEEeeEeCC-----------EEeceeeEEEeC
Q 015838 214 CH--GIPDSRKLEDGDIVNIDVTVYYKG-----------VHGDLNETYFVG 251 (399)
Q Consensus 214 ~H--g~p~~r~L~~GDiV~iD~g~~~~G-----------Y~~D~~RT~~vG 251 (399)
.. ...++.+|++|.++.|..+.+..+ +-.-+..|++|.
T Consensus 184 ~~~~~~~~~~~l~~GMv~~iEp~iy~~~~~~~~~~~~~~~g~~ied~v~Vt 234 (243)
T cd01087 184 GYLRYLRRARPLEPGMVITIEPGIYFIPDLLDVPEYFRGGGIRIEDDVLVT 234 (243)
T ss_pred cccccCCCCCCCCCCCEEEECCEEEeCCcccccccccceeEEEeeeEEEEc
Confidence 11 112467899999999999998654 566678899885
No 62
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=96.09 E-value=0.046 Score=50.15 Aligned_cols=97 Identities=22% Similarity=0.250 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HHHcCCcccccceeeccCCccccCCCCCCCCCCCCCceecCC
Q 015838 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH-ATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVG 333 (399)
Q Consensus 255 ~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~-~~~~G~~~~~~~~GHGIG~~~he~P~i~~~~~~~~~~~l~~G 333 (399)
+..|++.+.+.++++++++.++||++-.||...+.+. +.+.|........-=+.|.. ..++|+. .++..|++|
T Consensus 1 e~~R~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~~g~~~~~~~~~~~~g~~----~~~~~~~--~~~~~l~~g 74 (207)
T PF00557_consen 1 ECMRKAARIADAAMEAAMEALRPGMTEYEIAAAIERAMLRRHGGEEPAFPPIVGSGPN----TDLPHYT--PTDRRLQEG 74 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCBHHHHHHHHHHHHHHHTTTTEESSESEEEECCC----CGETTTB--CCSSBESTT
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHcCCCcccCCceEecCCc----ceeccee--ccceeeecC
Confidence 3578899999999999999999999999999999987 67777432111001111211 1223442 235689999
Q ss_pred cEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEE
Q 015838 334 QTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLV 375 (399)
Q Consensus 334 mvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlV 375 (399)
+++.|+-+... +.+.+.+..|+++
T Consensus 75 d~v~id~~~~~------------------~gy~~d~~Rt~~~ 98 (207)
T PF00557_consen 75 DIVIIDFGPRY------------------DGYHADIARTFVV 98 (207)
T ss_dssp EEEEEEEEEEE------------------TTEEEEEEEEEES
T ss_pred Ccceeecccee------------------eeeEeeeeeEEEE
Confidence 99999986554 2345667788876
No 63
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=96.02 E-value=0.054 Score=55.30 Aligned_cols=104 Identities=18% Similarity=0.196 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCccccc--ceeeccCCc--cccCCCCCCCCCC--CCCce
Q 015838 256 ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKS--YCGHGIGEL--FHCAPNIPHYSRN--KAVGV 329 (399)
Q Consensus 256 ~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~~~~--~~GHGIG~~--~he~P~i~~~~~~--~~~~~ 329 (399)
..+++-+.+.++++.+++.++||++..||.+.+++.+++.+-..... ...+|++.. +--.-.++||..+ +.+.+
T Consensus 21 ~~r~Aa~Ia~~~l~~~~~~ikpG~t~~el~~~~~~~i~~~~a~~~~~~~~~~~g~afpt~vSvN~~v~H~~P~~~d~~~~ 100 (389)
T TIGR00495 21 KYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETAKIFKKEKEMEKGIAFPTCISVNNCVGHFSPLKSDQDYI 100 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCeEEecCCeeeCCCCCCCCCCcC
Confidence 46677788889999999999999999999999998888765221111 011222211 1111234555432 22478
Q ss_pred ecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeC
Q 015838 330 MKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTE 377 (399)
Q Consensus 330 l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe 377 (399)
|++|.++.|.-+... || +.+-+.+|+.|.+
T Consensus 101 Lk~GDvVkIDlG~~i-----------------dG-Y~aD~arTv~vG~ 130 (389)
T TIGR00495 101 LKEGDVVKIDLGCHI-----------------DG-FIALVAHTFVVGV 130 (389)
T ss_pred cCCCCEEEEEEEEEE-----------------CC-EEEEEEEEEEECC
Confidence 999999999987665 34 4677899999974
No 64
>PRK08671 methionine aminopeptidase; Provisional
Probab=96.01 E-value=0.12 Score=50.58 Aligned_cols=95 Identities=26% Similarity=0.286 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCC--------CCCC
Q 015838 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGI--------PDSR 221 (399)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~--------p~~r 221 (399)
..+++.+.+.++++.+.+.++||++..||.+.+.+.+.+.|..+. .+..++. .|.+ ..|.- .++.
T Consensus 102 ~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~~G~~~~-~~~~GHg----iG~~--~~he~p~ip~~~~~~~~ 174 (291)
T PRK08671 102 KYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPI-RNLTGHG----LERY--ELHAGPSIPNYDEGGGV 174 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-CCCcccC----cCCC--cccCCCccCccCCCCCc
Confidence 456788888999999999999999999999999999999987653 2222221 1211 12221 2367
Q ss_pred cCCCCCeEEEEEeeE-eCCEEeceeeEEEeC
Q 015838 222 KLEDGDIVNIDVTVY-YKGVHGDLNETYFVG 251 (399)
Q Consensus 222 ~L~~GDiV~iD~g~~-~~GY~~D~~RT~~vG 251 (399)
+|++|+++.|+..+. -.|+..|-.+|-+..
T Consensus 175 ~le~GmV~aIEp~~t~G~G~v~~~~~~~iy~ 205 (291)
T PRK08671 175 KLEEGDVYAIEPFATDGEGKVVEGPEVEIYS 205 (291)
T ss_pred eeCCCCEEEEcceEECCCCeEecCCceEEEe
Confidence 899999999998766 467777777776664
No 65
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=95.80 E-value=0.099 Score=49.13 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCC-CCCCCCceeeeCCCCccccCCCCCCcCCCCC
Q 015838 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPL-NYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (399)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l-~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GD 227 (399)
...+++.+.+.++++++.+.++||++-.||+..+.+.+.+.|..+..- ..+.+...+.++.+.. .-..+|++|.
T Consensus 120 ~~~~~~~~~~~ea~~~~~~~~kpG~~~~dv~~a~~~~~~~~G~~~~~~~~~h~~g~~~~~~~~~~-----~~~~~l~~gm 194 (228)
T cd01089 120 GKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVEGVLSHQLKRVVSSGEGKA-----KLVECVKHGL 194 (228)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHcCCEEecCccccCcCceEecCCCCc-----cchhhccCCc
Confidence 467788889999999999999999999999999999999999422110 0011111222222111 0146799999
Q ss_pred eEEEEEeeEeCC-EEeceeeEEEeCC
Q 015838 228 IVNIDVTVYYKG-VHGDLNETYFVGN 252 (399)
Q Consensus 228 iV~iD~g~~~~G-Y~~D~~RT~~vG~ 252 (399)
++.+....+..| +-.-+..|++|.+
T Consensus 195 vf~~ep~~~~~g~~~~~~~~Tv~vt~ 220 (228)
T cd01089 195 LFPYPVLYEKEGEVVAQFKLTVLLTP 220 (228)
T ss_pred ccccceeEccCCCeEEEEEEEEEEcC
Confidence 999999998765 7889999999953
No 66
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.041 Score=53.30 Aligned_cols=85 Identities=20% Similarity=0.270 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCC-cccccceee--ccCCccccCCCCCCCCCCCCCceecC
Q 015838 256 ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF-SVVKSYCGH--GIGELFHCAPNIPHYSRNKAVGVMKV 332 (399)
Q Consensus 256 ~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~-~~~~~~~GH--GIG~~~he~P~i~~~~~~~~~~~l~~ 332 (399)
.+|++-+.+++++++|..++|||++..||.+++.+.+-++|. +-..+|.|. ++=..+.|- |-|.. .+.+.|+.
T Consensus 124 ~mR~ac~LarevLd~Aa~~v~PgvTTdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNEv--iCHGI--PD~RpLed 199 (369)
T KOG2738|consen 124 GMRKACRLAREVLDYAATLVRPGVTTDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNEV--ICHGI--PDSRPLED 199 (369)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhcCCcCCCcccCCCchhhhcchhhe--eecCC--CCcCcCCC
Confidence 466777888999999999999999999999999998888773 322222111 111111110 11110 13468999
Q ss_pred CcEEEEcccccc
Q 015838 333 GQTFTIEPMINA 344 (399)
Q Consensus 333 GmvftIEP~i~~ 344 (399)
|..+.|...+|.
T Consensus 200 GDIvNiDVtvY~ 211 (369)
T KOG2738|consen 200 GDIVNIDVTVYL 211 (369)
T ss_pred CCEEeEEEEEEe
Confidence 999999998887
No 67
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=95.52 E-value=0.14 Score=50.20 Aligned_cols=98 Identities=17% Similarity=0.213 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCcccccceeeccCCccccCCCCCCCCCC-CCCceecCC
Q 015838 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRN-KAVGVMKVG 333 (399)
Q Consensus 255 ~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~~~~~~GHGIG~~~he~P~i~~~~~~-~~~~~l~~G 333 (399)
+..+++-+.+.++++.+++.++||++..||.+.+++.+.+.|... .| .-.|.. ....+||..+ .++.+|++|
T Consensus 6 ~~~r~A~~I~~~~~~~~~~~i~~G~se~el~~~~e~~~~~~g~~~--aF-p~~vs~----n~~~~H~~p~~~d~~~l~~G 78 (295)
T TIGR00501 6 EKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEP--AF-PCNISI----NECAAHFTPKAGDKTVFKDG 78 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC--CC-Ccceec----CCEeeCCCCCCCcCccCCCC
Confidence 356788888999999999999999999999999999999988542 10 001111 1112333322 234689999
Q ss_pred cEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeC
Q 015838 334 QTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTE 377 (399)
Q Consensus 334 mvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe 377 (399)
.++.|+.+... +| +-+-+..|+.|.+
T Consensus 79 DvV~iD~G~~~-----------------dG-Y~aD~arT~~vG~ 104 (295)
T TIGR00501 79 DVVKLDLGAHV-----------------DG-YIADTAITVDLGD 104 (295)
T ss_pred CEEEEEEeEEE-----------------CC-EEEEEEEEEEeCc
Confidence 99999986554 45 4567788988864
No 68
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=95.21 E-value=0.19 Score=51.01 Aligned_cols=98 Identities=27% Similarity=0.279 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCC------CCCcC
Q 015838 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP------DSRKL 223 (399)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p------~~r~L 223 (399)
..|+.-.+..++.+++.++++||++-.||++..++.+.+.|........ +...+. ...-.|-.| ++.+|
T Consensus 263 ~~~~iy~~V~~aq~aa~~~~rpG~~~~~vd~~ar~~i~~~g~~~~~~h~--~GHgvG---~~l~vhE~p~~~~~~~~~~L 337 (384)
T COG0006 263 EQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLYFLHG--TGHGVG---FVLDVHEHPQYLSPGSDTTL 337 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcCCcccccCC--ccccCC---CCcccCcCccccCCCCCccc
Confidence 3457778899999999999999999999999999999996643321111 111121 001123222 46799
Q ss_pred CCCCeEEEEEeeEe-CCEEeceeeEEEeCC
Q 015838 224 EDGDIVNIDVTVYY-KGVHGDLNETYFVGN 252 (399)
Q Consensus 224 ~~GDiV~iD~g~~~-~GY~~D~~RT~~vG~ 252 (399)
++|-++.++.+.++ +++-.-+..+++|.+
T Consensus 338 ~~GMv~t~Epg~y~~g~~GirIEd~vlVte 367 (384)
T COG0006 338 EPGMVFSIEPGIYIPGGGGVRIEDTVLVTE 367 (384)
T ss_pred cCCcEEEeccccccCCCceEEEEEEEEEcC
Confidence 99999999999885 558889999999965
No 69
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=94.73 E-value=0.016 Score=36.91 Aligned_cols=29 Identities=38% Similarity=1.151 Sum_probs=22.2
Q ss_pred cccccccCCccccccchhhccCCCCCCccccChhHhh
Q 015838 12 SLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFK 48 (399)
Q Consensus 12 ~~~c~~c~~~~~l~c~~c~~~~~~~~~~~~c~q~cf~ 48 (399)
+..|..|++.++-.||.|.. .+||-+|+|
T Consensus 2 ~~~C~vC~~~~kY~Cp~C~~--------~~CSl~C~k 30 (30)
T PF04438_consen 2 RKLCSVCGNPAKYRCPRCGA--------RYCSLACYK 30 (30)
T ss_dssp -EEETSSSSEESEE-TTT----------EESSHHHHH
T ss_pred cCCCccCcCCCEEECCCcCC--------ceeCcEeEC
Confidence 45799999988899998864 499999997
No 70
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=94.44 E-value=0.4 Score=50.01 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHc----CCcccccceeeccCCccccCCCCCCCCCC-CCCcee
Q 015838 256 ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMS----GFSVVKSYCGHGIGELFHCAPNIPHYSRN-KAVGVM 330 (399)
Q Consensus 256 ~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~----G~~~~~~~~GHGIG~~~he~P~i~~~~~~-~~~~~l 330 (399)
..+++.+.+..+++.+++.++||++..||...+++.+++. |...-..| .-++++. -..+||..+ +++.+|
T Consensus 160 ~~R~AaeIa~~vl~~~~~~IkpG~se~EIa~~ie~~ir~~~~~~G~~~g~aF-Pt~vS~N----~~aaH~tP~~gd~~vL 234 (470)
T PTZ00053 160 DLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADGLKCGWAF-PTGCSLN----HCAAHYTPNTGDKTVL 234 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcCCcccCCC-CceeecC----ccccCCCCCCCCCcEe
Confidence 3667777788888899999999999999999887765543 43211111 1123321 123444332 345799
Q ss_pred cCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEe
Q 015838 331 KVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVT 376 (399)
Q Consensus 331 ~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVT 376 (399)
+.|.++.|..+... +| +-+-+..||.|.
T Consensus 235 k~GDvVkID~G~~v-----------------dG-YiaD~ArTv~vg 262 (470)
T PTZ00053 235 TYDDVCKLDFGTHV-----------------NG-RIIDCAFTVAFN 262 (470)
T ss_pred cCCCeEEEEEeEEE-----------------CC-EEEeEEEEEEeC
Confidence 99999999987654 34 345677888774
No 71
>PRK10879 proline aminopeptidase P II; Provisional
Probab=93.32 E-value=0.97 Score=46.90 Aligned_cols=101 Identities=24% Similarity=0.345 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH----HHcCCCCCC-------CCC-CCCCcee----eeCCCCccc
Q 015838 151 MRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEAT----ITAGGYPSP-------LNY-HFFPKSC----CTSVNEVIC 214 (399)
Q Consensus 151 ~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~----~~~G~~ps~-------l~~-~~fp~~v----~~g~n~~~~ 214 (399)
.|++.+++.++++++++.++||++-.+|...+.+.+ .+.|..+.. ..+ ..|+..+ ...+.+...
T Consensus 284 q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~iGldvHd~~~ 363 (438)
T PRK10879 284 QREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLGLDVHDVGV 363 (438)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhCCcCCCHHHHHHhccCccccCCCCccccCcCcCcCCC
Confidence 466777888899999999999999999988776544 334432210 000 0123222 111121111
Q ss_pred cCCCCCCcCCCCCeEEEEEeeEeC----------CEEeceeeEEEeC
Q 015838 215 HGIPDSRKLEDGDIVNIDVTVYYK----------GVHGDLNETYFVG 251 (399)
Q Consensus 215 Hg~p~~r~L~~GDiV~iD~g~~~~----------GY~~D~~RT~~vG 251 (399)
....++++|++|.++.|.-+.+.. |+-.-+..|++|.
T Consensus 364 ~~~~~~~~L~~GmV~tvEPgiY~~~~~~~~~~~~~~GiRiED~VlVT 410 (438)
T PRK10879 364 YGQDRSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDIVIT 410 (438)
T ss_pred cCCCCCCcCCCCCEEEECCEEEECCCcCcccccCccEEEeccEEEEC
Confidence 111135799999999999999863 4566778899985
No 72
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=90.98 E-value=0.18 Score=37.34 Aligned_cols=34 Identities=24% Similarity=0.634 Sum_probs=25.6
Q ss_pred cccchhhccCCCCCCccccChhHhhhhhHHHHHhhh
Q 015838 24 LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHL 59 (399)
Q Consensus 24 l~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h~ 59 (399)
..||.|.+. ||. ..-|||++|-+..++.+|+..+
T Consensus 4 kHC~~CG~~-Ip~-~~~fCS~~C~~~~~k~qk~~~~ 37 (59)
T PF09889_consen 4 KHCPVCGKP-IPP-DESFCSPKCREEYRKRQKRMRK 37 (59)
T ss_pred CcCCcCCCc-CCc-chhhhCHHHHHHHHHHHHHHHH
Confidence 357777543 443 4678999999999999998775
No 73
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=90.76 E-value=4.2 Score=38.15 Aligned_cols=96 Identities=17% Similarity=0.099 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceee--eCCCCc--cccCCCCCCcCCCC
Q 015838 152 RETCRIAREVLDAAARMI-RPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNEV--ICHGIPDSRKLEDG 226 (399)
Q Consensus 152 R~A~~ia~~~l~~~~~~i-~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~--~g~n~~--~~Hg~p~~r~L~~G 226 (399)
|++..++.++..++.+.+ +||++-.+|++.+.+.+.+.|.+-. ...++ .+. ....+. +.+...++++|++|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~g~~~~--h~~GH--gIG~~l~~hE~P~i~~~~~~~~~L~~G 189 (224)
T cd01085 114 KRDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDYG--HGTGH--GVGSFLNVHEGPQSISPAPNNVPLKAG 189 (224)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCC--CCCCC--CCCCCCcCCCCCCcCCcCCCCCCcCCC
Confidence 344445556666666666 5999999999999999888775310 00111 122 111221 11011245789999
Q ss_pred CeEEEEEeeEeC-CEEeceeeEEEeC
Q 015838 227 DIVNIDVTVYYK-GVHGDLNETYFVG 251 (399)
Q Consensus 227 DiV~iD~g~~~~-GY~~D~~RT~~vG 251 (399)
.++.|.-+.+.. .+-.-+..|++|.
T Consensus 190 mvftiEP~iy~~g~~gvried~v~Vt 215 (224)
T cd01085 190 MILSNEPGYYKEGKYGIRIENLVLVV 215 (224)
T ss_pred CEEEECCEeEeCCCeEEEeeEEEEEe
Confidence 999999999864 3556688888884
No 74
>PRK13607 proline dipeptidase; Provisional
Probab=87.82 E-value=3.4 Score=42.98 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH----HHcCCCCC-------CCCC--CCCCce----eeeCCCCccc
Q 015838 152 RETCRIAREVLDAAARMIRPGVTTDEIDRVVHEAT----ITAGGYPS-------PLNY--HFFPKS----CCTSVNEVIC 214 (399)
Q Consensus 152 R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~----~~~G~~ps-------~l~~--~~fp~~----v~~g~n~~~~ 214 (399)
++.-.++.++.+++.++++||++-.||...+++.+ .+.|.... .-++ ..||.. +...+.+.-.
T Consensus 271 ~~ly~~v~~aq~aai~~ikPG~~~~dv~~aa~~~i~~~L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iGldvHd~~~ 350 (443)
T PRK13607 271 AALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKLLRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLGLQVHDVAG 350 (443)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhCCCceEecCCCccCccCcccccCCC
Confidence 46778889999999999999999999998877554 44544321 0000 113322 2222222210
Q ss_pred c----------------CCCCCCcCCCCCeEEEEEeeEeCC
Q 015838 215 H----------------GIPDSRKLEDGDIVNIDVTVYYKG 239 (399)
Q Consensus 215 H----------------g~p~~r~L~~GDiV~iD~g~~~~G 239 (399)
. ..-..++|++|.++.|+-|+|+.+
T Consensus 351 ~~~~~~~~~~~~~~~~~~l~~~~~L~~GmV~TvEPGiY~~~ 391 (443)
T PRK13607 351 FMQDDRGTHLAAPEKHPYLRCTRVLEPGMVLTIEPGLYFID 391 (443)
T ss_pred cccccccccccccccccccccCCcCCCCcEEEECCeeeeCh
Confidence 0 011357999999999999998765
No 75
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=85.79 E-value=0.47 Score=35.46 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=20.3
Q ss_pred cccccchhhccCC---CCCCccccChhHhhhhh
Q 015838 22 AHLQCPKCMELKL---PREGAAFCTQDCFKASW 51 (399)
Q Consensus 22 ~~l~c~~c~~~~~---~~~~~~~c~q~cf~~~w 51 (399)
.+..||+|.|.-. ......|||+-|-.-+-
T Consensus 5 ~~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDL 37 (62)
T PRK00418 5 ITVNCPTCGKPVEWGEISPFRPFCSKRCQLIDL 37 (62)
T ss_pred ccccCCCCCCcccccCCCCcCCcccHHHHhhhH
Confidence 3477888888742 11245799999987653
No 76
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=84.42 E-value=1.2 Score=32.59 Aligned_cols=38 Identities=24% Similarity=0.859 Sum_probs=29.7
Q ss_pred ccccCC----ccccccchhhccCCCCCCccccChhHhhhhhHHHHHhhh
Q 015838 15 CVRCGK----PAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHL 59 (399)
Q Consensus 15 c~~c~~----~~~l~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h~ 59 (399)
|..|.+ ...+.||.| ||| ++||.+=.+.+...|+.+-.
T Consensus 2 Cpv~~~~~~~~v~~~Cp~c---Gip----thcS~ehw~~D~e~H~~~c~ 43 (55)
T PF13824_consen 2 CPVCKKDLPAHVNFECPDC---GIP----THCSEEHWEDDYEEHRQLCE 43 (55)
T ss_pred CCCCccccccccCCcCCCC---CCc----CccCHHHHHHhHHHHHHHHH
Confidence 666766 556888876 787 89999999888888888653
No 77
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=82.40 E-value=7.1 Score=39.16 Aligned_cols=101 Identities=23% Similarity=0.284 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHc-------------CCcc-----cccceeeccCCccccCCC
Q 015838 256 ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMS-------------GFSV-----VKSYCGHGIGELFHCAPN 317 (399)
Q Consensus 256 ~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~-------------G~~~-----~~~~~GHGIG~~~he~P~ 317 (399)
..+..-+.+..++...++.++||++..||-....+.+.+. |... +.+..+ |-.|.
T Consensus 23 KYk~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfPT~Isvnncv~-------h~sPl 95 (398)
T KOG2776|consen 23 KYKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDFEKGIAFPTSISVNNCVC-------HFSPL 95 (398)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCchHHHHHHhhhHHHHHHHHHHHhhhhhhhccccccceecccceee-------ccCcC
Confidence 4556667788888999999999999999876554443322 2211 011111 12232
Q ss_pred CCCCCCCCCCceecCCcEEEEccccccCCcccccCCCCceEEeeCCeeeEEEEEEEEEeCCCeeeccCC
Q 015838 318 IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTAR 386 (399)
Q Consensus 318 i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~wpD~wt~~t~~g~~~~~~EdtvlVTe~G~EiLT~~ 386 (399)
. ++.+.+|++|.++-|..+... || +-+-+.||++|++.--.-+|++
T Consensus 96 k-----sd~~~~Lk~GDvVKIdLG~Hi-----------------DG-fiA~vaHT~VV~~~~~~~vtG~ 141 (398)
T KOG2776|consen 96 K-----SDADYTLKEGDVVKIDLGVHI-----------------DG-FIALVAHTIVVGPAPDTPVTGR 141 (398)
T ss_pred C-----CCCcccccCCCEEEEEeeeee-----------------cc-ceeeeeeeEEeccCCCCcccCc
Confidence 2 344689999999999987776 34 3466899999986543344544
No 78
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=81.39 E-value=4.4 Score=35.24 Aligned_cols=28 Identities=39% Similarity=1.115 Sum_probs=21.5
Q ss_pred ccccccCC-ccccccchhhccCCCCCCccccChhHhh
Q 015838 13 LSCVRCGK-PAHLQCPKCMELKLPREGAAFCTQDCFK 48 (399)
Q Consensus 13 ~~c~~c~~-~~~l~c~~c~~~~~~~~~~~~c~q~cf~ 48 (399)
..|.-|.+ +.+-+||.|. . .|||-.|||
T Consensus 6 ~tC~ic~e~~~KYKCpkC~---v-----PYCSl~CfK 34 (157)
T KOG2857|consen 6 TTCVICLESEIKYKCPKCS---V-----PYCSLPCFK 34 (157)
T ss_pred eeehhhhcchhhccCCCCC---C-----ccccchhhh
Confidence 45666877 4489999997 2 489999985
No 79
>PRK01343 zinc-binding protein; Provisional
Probab=79.89 E-value=1.1 Score=32.97 Aligned_cols=26 Identities=27% Similarity=0.703 Sum_probs=18.2
Q ss_pred cccchhhccCCCCCCccccChhHhhhh
Q 015838 24 LQCPKCMELKLPREGAAFCTQDCFKAS 50 (399)
Q Consensus 24 l~c~~c~~~~~~~~~~~~c~q~cf~~~ 50 (399)
..||+|.|.-.. ....|||+-|-.-+
T Consensus 10 ~~CP~C~k~~~~-~~rPFCS~RC~~iD 35 (57)
T PRK01343 10 RPCPECGKPSTR-EAYPFCSERCRDID 35 (57)
T ss_pred CcCCCCCCcCcC-CCCcccCHHHhhhh
Confidence 557777776543 34579999998765
No 80
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.96 E-value=1.4 Score=32.94 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=9.9
Q ss_pred CccccChhHhhhh
Q 015838 38 GAAFCTQDCFKAS 50 (399)
Q Consensus 38 ~~~~c~q~cf~~~ 50 (399)
...|||+-|.-=+
T Consensus 25 frPFCSkRCklID 37 (65)
T COG3024 25 FRPFCSKRCKLID 37 (65)
T ss_pred cCcchhHhhhhcc
Confidence 4579999997544
No 81
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=77.34 E-value=0.88 Score=33.48 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=13.0
Q ss_pred cccchhhccCCC---CCCccccChhHhhhh
Q 015838 24 LQCPKCMELKLP---REGAAFCTQDCFKAS 50 (399)
Q Consensus 24 l~c~~c~~~~~~---~~~~~~c~q~cf~~~ 50 (399)
..||+|.|.-.. -....|||+-|-.-+
T Consensus 3 v~CP~C~k~~~~~~~n~~rPFCS~RCk~iD 32 (57)
T PF03884_consen 3 VKCPICGKPVEWSPENPFRPFCSERCKLID 32 (57)
T ss_dssp EE-TTT--EEE-SSSSS--SSSSHHHHHHH
T ss_pred ccCCCCCCeecccCCCCcCCcccHhhcccC
Confidence 346666655332 014569999997544
No 82
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=71.77 E-value=15 Score=40.31 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCC-----CccccCCCCCCcCCC
Q 015838 151 MRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVN-----EVICHGIPDSRKLED 225 (399)
Q Consensus 151 ~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n-----~~~~Hg~p~~r~L~~ 225 (399)
|.++-..--.+.+++..+++||..-.+|...+...+.+.+-.-. ..|++.+.+|.. ..+.-..-+++.|+.
T Consensus 259 mq~nY~fLl~aqe~il~~lrpG~ki~dVY~~~l~~v~k~~Pel~----~~~~k~lG~~iGlEFREssl~inaKnd~~lk~ 334 (960)
T KOG1189|consen 259 MQENYEFLLAAQEEILKLLRPGTKIGDVYEKALDYVEKNKPELV----PNFTKNLGFGIGLEFRESSLVINAKNDRVLKK 334 (960)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCcchh----hhhhhhcccccceeeecccccccccchhhhcc
Confidence 45566666667777888999999999999999998888764322 135555444332 111122235699999
Q ss_pred CCeEEEEEeeE-------eCCEEeceeeEEEeCC
Q 015838 226 GDIVNIDVTVY-------YKGVHGDLNETYFVGN 252 (399)
Q Consensus 226 GDiV~iD~g~~-------~~GY~~D~~RT~~vG~ 252 (399)
|++.+|.+|.. .+-|.--++-|+.||+
T Consensus 335 gmvFni~lGf~nl~n~~~~~~yaL~l~DTvlv~e 368 (960)
T KOG1189|consen 335 GMVFNISLGFSNLTNPESKNSYALLLSDTVLVGE 368 (960)
T ss_pred CcEEEEeeccccccCcccccchhhhccceeeecC
Confidence 99999999865 2346667899999985
No 83
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=67.74 E-value=34 Score=33.76 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH----HHHcCCcccccceeeccCCcc-ccCCCCCCCC-CCCCCc
Q 015838 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH----ATMSGFSVVKSYCGHGIGELF-HCAPNIPHYS-RNKAVG 328 (399)
Q Consensus 255 ~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~----~~~~G~~~~~~~~GHGIG~~~-he~P~i~~~~-~~~~~~ 328 (399)
.+.++..++-+++...+.+.+|||++.-||-+.+++. +.+.|...- .|...|... |++ .||- +.++..
T Consensus 86 ~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li~e~gl~aG---i~FPtG~SlN~cA---AHyTpNaGd~t 159 (397)
T KOG2775|consen 86 QDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLILENGLNAG---IGFPTGCSLNHCA---AHYTPNAGDKT 159 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHhcccccc---ccCCCcccccchh---hhcCCCCCCce
Confidence 4677778888888889999999999999998887654 445665422 333334332 222 2222 235668
Q ss_pred eecCCcEEEEccccc
Q 015838 329 VMKVGQTFTIEPMIN 343 (399)
Q Consensus 329 ~l~~GmvftIEP~i~ 343 (399)
+|+...|.-|.-+..
T Consensus 160 VLqydDV~KiDfGth 174 (397)
T KOG2775|consen 160 VLKYDDVMKIDFGTH 174 (397)
T ss_pred eeeecceEEEecccc
Confidence 999999988876443
No 84
>PF02069 Metallothio_Pro: Prokaryotic metallothionein; InterPro: IPR000518 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium and nickel. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ]. An empirical classification into three classes was proposed by Kojima [], with class III MTs including atypical polypeptides composed of gamma-glutamylcysteinyl units. Class I and class II MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. The MT superfamily is subdivided into families, subfamilies, subgroups, and isolated isoforms and alleles. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects [], e.g., low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range. Family 14 consists of prokaryota MTs. Its members are recognised by the sequence pattern K-C-A-C-x(2)-C-L-C.The taxonomic range of the members extends to cyanobacteria. Known characteristics are: 53 to 56 AAs; 9 conserved Cys; one conserved tyrosine residue; one conserved histidine residue; contain other unusual residues. ; GO: 0046872 metal ion binding; PDB: 1JJD_A.
Probab=67.40 E-value=2.5 Score=30.53 Aligned_cols=20 Identities=20% Similarity=0.703 Sum_probs=15.1
Q ss_pred ccCCCCCCccccChhHhhhh
Q 015838 31 ELKLPREGAAFCTQDCFKAS 50 (399)
Q Consensus 31 ~~~~~~~~~~~c~q~cf~~~ 50 (399)
+..|.+++.|||||.|-...
T Consensus 20 ~~Ai~~dGk~YCS~aCA~gH 39 (52)
T PF02069_consen 20 EEAIQKDGKYYCSEACANGH 39 (52)
T ss_dssp TTSEESSS-EESSHHHHHTS
T ss_pred hHhHHhCCEeeecHHHhccC
Confidence 56676788999999998653
No 85
>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.
Probab=63.08 E-value=5 Score=27.10 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=16.8
Q ss_pred ccccccCCccccccc-hhhccCCCCCCccccChhHhhh
Q 015838 13 LSCVRCGKPAHLQCP-KCMELKLPREGAAFCTQDCFKA 49 (399)
Q Consensus 13 ~~c~~c~~~~~l~c~-~c~~~~~~~~~~~~c~q~cf~~ 49 (399)
..|..|++.....=- .-+..+- ....|||+.|...
T Consensus 7 ~~C~~C~~~~~~~~~~~~~~~~g--~~~~FCS~~C~~~ 42 (43)
T PF06467_consen 7 KTCSYCKKYIPNKPTMIEVQYDG--KMKQFCSQSCLSS 42 (43)
T ss_dssp EE-TTT--EEECCC----EE-TT--TTSCCSSHHHHHH
T ss_pred CcCcccCCcccCCCccccccccC--cccChhCHHHHhh
Confidence 567778876542210 1222222 2468999999864
No 86
>PRK04023 DNA polymerase II large subunit; Validated
Probab=61.73 E-value=4.7 Score=45.51 Aligned_cols=38 Identities=26% Similarity=0.522 Sum_probs=26.2
Q ss_pred CCCccccccccccccCCccc-cccchhhccCCCCCCccccCh
Q 015838 4 GSDAAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQ 44 (399)
Q Consensus 4 ~~~~~~~~~~~c~~c~~~~~-l~c~~c~~~~~~~~~~~~c~q 44 (399)
|....+...+.|..||+.+. .+||.|-+.-- ..+||..
T Consensus 618 g~~eVEVg~RfCpsCG~~t~~frCP~CG~~Te---~i~fCP~ 656 (1121)
T PRK04023 618 GTIEVEIGRRKCPSCGKETFYRRCPFCGTHTE---PVYRCPR 656 (1121)
T ss_pred CceeecccCccCCCCCCcCCcccCCCCCCCCC---cceeCcc
Confidence 44556666788999998864 78888877622 3466654
No 87
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=59.86 E-value=3.2 Score=43.54 Aligned_cols=37 Identities=24% Similarity=0.854 Sum_probs=28.9
Q ss_pred ccccCCccccccchhhccCCCCCCccccChhHhhhhhHHHHHhhhh
Q 015838 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLK 60 (399)
Q Consensus 15 c~~c~~~~~l~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h~~ 60 (399)
|..|.++|-+-| |- ..-|||=+|..+.|++|++..+.
T Consensus 530 C~nC~~EAiy~C--CW-------NTSYCsveCQQ~HW~~H~ksCrr 566 (588)
T KOG3612|consen 530 CYNCLDEAIYHC--CW-------NTSYCSVECQQGHWPEHRKSCRR 566 (588)
T ss_pred HHhhhHHHHHHh--hc-------cccccCcchhhccchhHhhhhcc
Confidence 888888887665 22 23469999999999999998753
No 88
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=59.52 E-value=31 Score=26.76 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=32.6
Q ss_pred cCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCC-ccccCCCCCCcCCCCCeEEE
Q 015838 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE-VICHGIPDSRKLEDGDIVNI 231 (399)
Q Consensus 169 i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~-~~~Hg~p~~r~L~~GDiV~i 231 (399)
++.|.|-.+++..+|..+.++=.+ ....|.+. ....-.+-+.+|++||+|.|
T Consensus 21 L~~GaTV~D~a~~iH~di~~~f~~-----------A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI 73 (75)
T cd01666 21 LRRGSTVEDVCNKIHKDLVKQFKY-----------ALVWGSSVKHSPQRVGLDHVLEDEDVVQI 73 (75)
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCe-----------eEEeccCCcCCCeECCCCCEecCCCEEEE
Confidence 566999999999999777654211 11112111 11223456788999999987
No 89
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=56.96 E-value=3.4 Score=28.73 Aligned_cols=37 Identities=27% Similarity=0.578 Sum_probs=26.1
Q ss_pred cccccCCccc---cccchhhccCCCCCCccccChhHhhhhhHHHHHhh
Q 015838 14 SCVRCGKPAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (399)
Q Consensus 14 ~c~~c~~~~~---l~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h 58 (399)
.|.+|+++.. .+|-.|.+- ---++||......|+.-|
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~--------dLC~~Cf~~~~~~H~~~H 41 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDF--------DLCSSCYAKGKKGHPPDH 41 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCC--------cCHHHHHCcCcCCCCCCC
Confidence 5888988654 678888643 336899998875665555
No 90
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.41 E-value=2.6 Score=35.90 Aligned_cols=22 Identities=32% Similarity=0.806 Sum_probs=18.0
Q ss_pred ccccccccCCccccccchhhcc
Q 015838 11 TSLSCVRCGKPAHLQCPKCMEL 32 (399)
Q Consensus 11 ~~~~c~~c~~~~~l~c~~c~~~ 32 (399)
+...|+-||+.+-+|||.|...
T Consensus 27 ~eafcskcgeati~qcp~csas 48 (160)
T COG4306 27 MEAFCSKCGEATITQCPICSAS 48 (160)
T ss_pred HHHHHhhhchHHHhcCCccCCc
Confidence 3466999999999999999753
No 91
>COG3350 Uncharacterized conserved protein [Function unknown]
Probab=47.42 E-value=7.7 Score=28.01 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=9.3
Q ss_pred ccccChhHhhhh
Q 015838 39 AAFCTQDCFKAS 50 (399)
Q Consensus 39 ~~~c~q~cf~~~ 50 (399)
=|||||+|-...
T Consensus 28 YYFcse~~~~~F 39 (53)
T COG3350 28 YYFCSEECKEKF 39 (53)
T ss_pred EEEeCHHHHHHH
Confidence 489999996543
No 92
>KOG2858 consensus Uncharacterized conserved protein [General function prediction only]
Probab=46.58 E-value=8.2 Score=38.57 Aligned_cols=37 Identities=27% Similarity=0.685 Sum_probs=28.5
Q ss_pred CCccccccccccccCCccc-cccchhhccCCCCCCccccChhHhhh
Q 015838 5 SDAAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQDCFKA 49 (399)
Q Consensus 5 ~~~~~~~~~~c~~c~~~~~-l~c~~c~~~~~~~~~~~~c~q~cf~~ 49 (399)
+--.+.+.-.|..|+++.. -+||.|+- -+|+=+|-|.
T Consensus 10 ~~~~~~~~vlCgVClknE~KYkCPRCl~--------rtCsLeCskk 47 (390)
T KOG2858|consen 10 KSGGGLHSVLCGVCLKNEPKYKCPRCLA--------RTCSLECSKK 47 (390)
T ss_pred ccccccchhhhhhcccCcccccCcchhh--------hheecccccc
Confidence 3344556678999999885 89999984 5999999853
No 93
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=46.38 E-value=9.9 Score=28.15 Aligned_cols=21 Identities=38% Similarity=0.956 Sum_probs=11.0
Q ss_pred ccccCCccccccchhhccCCC
Q 015838 15 CVRCGKPAHLQCPKCMELKLP 35 (399)
Q Consensus 15 c~~c~~~~~l~c~~c~~~~~~ 35 (399)
|..||+..--+|.+|-|+|-+
T Consensus 30 CPnCGe~~I~Rc~~CRk~g~~ 50 (61)
T COG2888 30 CPNCGEVEIYRCAKCRKLGNP 50 (61)
T ss_pred CCCCCceeeehhhhHHHcCCc
Confidence 444554444555555565554
No 94
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=44.34 E-value=12 Score=27.71 Aligned_cols=22 Identities=32% Similarity=0.791 Sum_probs=10.9
Q ss_pred cccccCCccccccchhhccCCC
Q 015838 14 SCVRCGKPAHLQCPKCMELKLP 35 (399)
Q Consensus 14 ~c~~c~~~~~l~c~~c~~~~~~ 35 (399)
.|..||+..--+|..|-|++.+
T Consensus 27 ~CPnCG~~~I~RC~~CRk~~~~ 48 (59)
T PRK14890 27 LCPNCGEVIIYRCEKCRKQSNP 48 (59)
T ss_pred eCCCCCCeeEeechhHHhcCCc
Confidence 3444555433455555555543
No 95
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=41.51 E-value=11 Score=27.71 Aligned_cols=23 Identities=22% Similarity=0.716 Sum_probs=16.7
Q ss_pred cccchhhccCCCCCCccccChhHhh
Q 015838 24 LQCPKCMELKLPREGAAFCTQDCFK 48 (399)
Q Consensus 24 l~c~~c~~~~~~~~~~~~c~q~cf~ 48 (399)
..|+.|-|. ||. +--|||.+|-.
T Consensus 9 ~HC~VCg~a-Ip~-de~~CSe~C~e 31 (64)
T COG4068 9 RHCVVCGKA-IPP-DEQVCSEECGE 31 (64)
T ss_pred ccccccCCc-CCC-ccchHHHHHHH
Confidence 458888776 432 56799999984
No 96
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=40.05 E-value=11 Score=26.61 Aligned_cols=39 Identities=31% Similarity=0.584 Sum_probs=26.9
Q ss_pred cccccCC-ccc---cccchhhccCCCCCCccccChhHhhhhhHHHHHhhh
Q 015838 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHL 59 (399)
Q Consensus 14 ~c~~c~~-~~~---l~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h~ 59 (399)
.|.+|++ +.. .+|..|.+.+ |=--|+||...= .||.-|.
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~~d------~DlC~~C~~~~~-~H~~~H~ 44 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDDGD------FDLCQDCVVKGE-SHQEDHW 44 (48)
T ss_pred CCCCCCCCccccceEECCCCCCCC------CccCHHHHhCcC-CCCCCCc
Confidence 5888998 554 7799887532 333579998764 6776664
No 97
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=39.73 E-value=98 Score=33.68 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCC--CC---ccccCCCC
Q 015838 145 PDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSV--NE---VICHGIPD 219 (399)
Q Consensus 145 ~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~--n~---~~~Hg~p~ 219 (399)
.+....|..+..+-. .....++||.+-.+|...+...+.+.|-.-.| +|-..+..+. .. ..+-..-+
T Consensus 298 ~e~~~Ny~fl~~lQk----~i~~~~rpG~~~g~iY~~~~~yi~~~~pel~p----nF~~nvG~~igiefR~s~~~~nvkn 369 (1001)
T COG5406 298 SEQQKNYEFLYMLQK----YILGLVRPGTDSGIIYSEAEKYISSNGPELGP----NFIYNVGLMIGIEFRSSQKPFNVKN 369 (1001)
T ss_pred hHhhhhHHHHHHHHH----HHHhhcCCCCCchhHHHHHHHHHHhcCCccCc----hHhhhhhhhccccccccccceeccC
Confidence 344445555544444 44558999999999999999999888764332 2322232222 11 11222335
Q ss_pred CCcCCCCCeEEEEEe
Q 015838 220 SRKLEDGDIVNIDVT 234 (399)
Q Consensus 220 ~r~L~~GDiV~iD~g 234 (399)
+|+||.|++.+|.+|
T Consensus 370 ~r~lq~g~~fnis~g 384 (1001)
T COG5406 370 GRVLQAGCIFNISLG 384 (1001)
T ss_pred CceeccccEEEEeec
Confidence 699999999999985
No 98
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=39.69 E-value=15 Score=22.24 Aligned_cols=18 Identities=33% Similarity=0.994 Sum_probs=9.1
Q ss_pred cccccccCCccc---cccchh
Q 015838 12 SLSCVRCGKPAH---LQCPKC 29 (399)
Q Consensus 12 ~~~c~~c~~~~~---l~c~~c 29 (399)
...|..||++.. .-||.|
T Consensus 2 ~~~Cp~Cg~~~~~~~~fC~~C 22 (26)
T PF13248_consen 2 EMFCPNCGAEIDPDAKFCPNC 22 (26)
T ss_pred cCCCcccCCcCCcccccChhh
Confidence 345666666432 345555
No 99
>PF07305 DUF1454: Protein of unknown function (DUF1454); InterPro: IPR009918 This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
Probab=39.41 E-value=1.9e+02 Score=26.57 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCcccccceeeccCCccccCCCCCCCCCCCCCceecCC
Q 015838 254 DEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVG 333 (399)
Q Consensus 254 ~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~~G~~~~~~~~GHGIG~~~he~P~i~~~~~~~~~~~l~~G 333 (399)
.++++..-+.+.+=+.+.+...-|..+..+.-+.+++.+.+..- ..|.-|-+|-. -+|.. +++ +.|
T Consensus 114 ~~e~kaar~~a~~YmaAl~r~F~Ptls~eQs~~kl~~lL~~gk~---~~yy~q~~GAi----RYVva--d~g-----ekg 179 (200)
T PF07305_consen 114 GPEQKAARALAIEYMAALMRQFEPTLSPEQSQEKLQKLLTKGKG---SRYYSQTEGAI----RYVVA--DNG-----EKG 179 (200)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHcCCC---CcceeeccCce----EEEEe--cCC-----Cce
Confidence 36777777778888888899999999999999999998887543 24456666632 11211 122 568
Q ss_pred cEEEEccc
Q 015838 334 QTFTIEPM 341 (399)
Q Consensus 334 mvftIEP~ 341 (399)
++|+|||.
T Consensus 180 lTFAVEPI 187 (200)
T PF07305_consen 180 LTFAVEPI 187 (200)
T ss_pred eEEEeeee
Confidence 99999994
No 100
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=38.70 E-value=17 Score=25.13 Aligned_cols=16 Identities=19% Similarity=0.733 Sum_probs=13.2
Q ss_pred CCccccChhHhhhhhH
Q 015838 37 EGAAFCTQDCFKASWT 52 (399)
Q Consensus 37 ~~~~~c~q~cf~~~w~ 52 (399)
+.+-|||++|-..++.
T Consensus 21 ~~~lYCSe~Cr~~D~~ 36 (43)
T PF12855_consen 21 DGSLYCSEECRLKDQE 36 (43)
T ss_pred CCccccCHHHHhHhhh
Confidence 4788999999988754
No 101
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=37.95 E-value=82 Score=24.55 Aligned_cols=50 Identities=28% Similarity=0.274 Sum_probs=36.3
Q ss_pred CcCCCCCeEEEEEeeEe-CCEEecee------eEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015838 221 RKLEDGDIVNIDVTVYY-KGVHGDLN------ETYFVGNADEASRQLVQCTYECLEKAISIVKPGV 279 (399)
Q Consensus 221 r~L~~GDiV~iD~g~~~-~GY~~D~~------RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~ 279 (399)
+..++||.|.|++.++. +|-.-|-+ .+|.+|.- ....+++.++..+++|-
T Consensus 3 ~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~---------~~i~g~e~al~~m~~Ge 59 (94)
T PF00254_consen 3 RTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSG---------QVIPGLEEALIGMKVGE 59 (94)
T ss_dssp SSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSS---------SSSHHHHHHHTTSBTTE
T ss_pred ccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccC---------ccccchhhhcccccCCC
Confidence 56789999999999997 77666666 56777741 13346677777888874
No 102
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=36.11 E-value=12 Score=41.65 Aligned_cols=37 Identities=30% Similarity=0.694 Sum_probs=0.0
Q ss_pred CCCccccccccccccCCccc-cccchhhccCCCCCCccccC
Q 015838 4 GSDAAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCT 43 (399)
Q Consensus 4 ~~~~~~~~~~~c~~c~~~~~-l~c~~c~~~~~~~~~~~~c~ 43 (399)
|+..++...|+|..||+.+- .+||.|-..-.+ -|+|.
T Consensus 647 g~i~vei~~r~Cp~Cg~~t~~~~Cp~CG~~T~~---~~~Cp 684 (900)
T PF03833_consen 647 GTIEVEIGRRRCPKCGKETFYNRCPECGSHTEP---VYVCP 684 (900)
T ss_dssp -----------------------------------------
T ss_pred CeeEEeeecccCcccCCcchhhcCcccCCcccc---ceecc
Confidence 45667777899999999885 889999876544 57775
No 103
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=35.69 E-value=15 Score=26.26 Aligned_cols=22 Identities=32% Similarity=0.991 Sum_probs=16.7
Q ss_pred ccccccccccCCccc-------cccchhh
Q 015838 9 ETTSLSCVRCGKPAH-------LQCPKCM 30 (399)
Q Consensus 9 ~~~~~~c~~c~~~~~-------l~c~~c~ 30 (399)
+++..+|..||+.-. .+||-|-
T Consensus 3 ~~~~Y~C~~Cg~~~~~~~~~~~irCp~Cg 31 (49)
T COG1996 3 AMMEYKCARCGREVELDQETRGIRCPYCG 31 (49)
T ss_pred ceEEEEhhhcCCeeehhhccCceeCCCCC
Confidence 466788999998543 6799774
No 104
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=35.63 E-value=11 Score=26.57 Aligned_cols=37 Identities=27% Similarity=0.677 Sum_probs=23.7
Q ss_pred cccccCCccc----cccchhhccCCCCCCccccChhHhhhhh--HHHHHhh
Q 015838 14 SCVRCGKPAH----LQCPKCMELKLPREGAAFCTQDCFKASW--TSHKSVH 58 (399)
Q Consensus 14 ~c~~c~~~~~----l~c~~c~~~~~~~~~~~~c~q~cf~~~w--~~hk~~h 58 (399)
.|.+|.+... .+|..|.+. -.-++||...= ..|+.-|
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~--------dLC~~Cf~~g~~~~~H~~~H 44 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDF--------DLCLECFSAGAEIGKHRNDH 44 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCc--------chhHHhhhCcCCCCCCCCCC
Confidence 5888988553 778888653 33679997652 2444444
No 105
>PRK01490 tig trigger factor; Provisional
Probab=35.41 E-value=1.9e+02 Score=29.74 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=38.1
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCCCCcCCCCCeEEEEEeeEeCCEEec----eeeE
Q 015838 172 GVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGD----LNET 247 (399)
Q Consensus 172 GvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D----~~RT 247 (399)
-+|+.+|+..+.+....++-+ .+.+++++.||.|.+|+....+|=.-+ -..+
T Consensus 131 ~vtde~vd~~i~~l~~~~a~~------------------------~~~~~~~~~gD~V~vd~~~~~~g~~~~~~~~~~~~ 186 (435)
T PRK01490 131 EVTDEDVDEELERLRKQFATL------------------------VPVERPAENGDRVTIDFVGSIDGEEFEGGKAEDFS 186 (435)
T ss_pred CCCHHHHHHHHHHHHHhCCcc------------------------ccccccCCCCCEEEEEEEEEECCEECcCCCCCceE
Confidence 357888888888766554422 112366899999999999998774422 2356
Q ss_pred EEeCC
Q 015838 248 YFVGN 252 (399)
Q Consensus 248 ~~vG~ 252 (399)
|.+|.
T Consensus 187 ~~lg~ 191 (435)
T PRK01490 187 LELGS 191 (435)
T ss_pred EEEcC
Confidence 66763
No 106
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=35.41 E-value=17 Score=42.21 Aligned_cols=25 Identities=28% Similarity=0.663 Sum_probs=14.9
Q ss_pred cccccccccccCCccc-cccchhhcc
Q 015838 8 AETTSLSCVRCGKPAH-LQCPKCMEL 32 (399)
Q Consensus 8 ~~~~~~~c~~c~~~~~-l~c~~c~~~ 32 (399)
.+...++|..||.... ..||.|-..
T Consensus 663 VEV~~rkCPkCG~~t~~~fCP~CGs~ 688 (1337)
T PRK14714 663 VEVGRRRCPSCGTETYENRCPDCGTH 688 (1337)
T ss_pred EEEEEEECCCCCCccccccCcccCCc
Confidence 3344577877777543 566666544
No 107
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=35.15 E-value=15 Score=23.41 Aligned_cols=20 Identities=40% Similarity=1.017 Sum_probs=11.5
Q ss_pred cccccccCCccc-------cccchhhc
Q 015838 12 SLSCVRCGKPAH-------LQCPKCME 31 (399)
Q Consensus 12 ~~~c~~c~~~~~-------l~c~~c~~ 31 (399)
.+-|..||.++. ++||.|-.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 366888988653 78998854
No 108
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=34.68 E-value=19 Score=24.86 Aligned_cols=21 Identities=33% Similarity=0.980 Sum_probs=15.1
Q ss_pred ccccccccCCcc-------ccccchhhc
Q 015838 11 TSLSCVRCGKPA-------HLQCPKCME 31 (399)
Q Consensus 11 ~~~~c~~c~~~~-------~l~c~~c~~ 31 (399)
+..+|..||... .+.||.|-.
T Consensus 2 ~~y~C~~CG~~~~~~~~~~~~~Cp~CG~ 29 (46)
T PRK00398 2 AEYKCARCGREVELDEYGTGVRCPYCGY 29 (46)
T ss_pred CEEECCCCCCEEEECCCCCceECCCCCC
Confidence 456799999743 378998854
No 109
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=34.54 E-value=19 Score=30.00 Aligned_cols=22 Identities=32% Similarity=0.780 Sum_probs=15.6
Q ss_pred cccccccCCc----c-c-cccchhhccC
Q 015838 12 SLSCVRCGKP----A-H-LQCPKCMELK 33 (399)
Q Consensus 12 ~~~c~~c~~~----~-~-l~c~~c~~~~ 33 (399)
+|.|.+||+- . . +.||.|...-
T Consensus 9 KR~Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred cccCCCCcchhccCCCCCccCCCCCCcc
Confidence 5899999971 1 1 6799887653
No 110
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=33.99 E-value=16 Score=25.15 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=23.6
Q ss_pred cccccCCccc---cccchhhccCCCCCCccccChhHhhhhhHHHHHhh
Q 015838 14 SCVRCGKPAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (399)
Q Consensus 14 ~c~~c~~~~~---l~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h 58 (399)
.|.+|+++.. .+|..|.. |.--++||... .| .-|
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d--------~dLC~~C~~~~--~H-~~H 38 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPD--------YDLCESCEAKG--VH-PEH 38 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCC--------ccchHHhhCcC--CC-CCC
Confidence 5888988764 67877763 44468899876 55 445
No 111
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=33.74 E-value=77 Score=20.50 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 015838 154 TCRIAREVLDAAARMIRPGVTTDEIDRVVHEATI 187 (399)
Q Consensus 154 A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~ 187 (399)
.|.+...++..+...+....|+.+|...+.+.+.
T Consensus 3 ~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~ 36 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLKNNKTEEEIKKALEKACN 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHh
Confidence 4667888899999999999999999999988764
No 112
>PF12773 DZR: Double zinc ribbon
Probab=32.82 E-value=27 Score=24.24 Aligned_cols=31 Identities=35% Similarity=0.840 Sum_probs=22.3
Q ss_pred ccccccccCCccc------cccchhhccCCCCCCccccC
Q 015838 11 TSLSCVRCGKPAH------LQCPKCMELKLPREGAAFCT 43 (399)
Q Consensus 11 ~~~~c~~c~~~~~------l~c~~c~~~~~~~~~~~~c~ 43 (399)
..+.|..||.+.. +.||.|....-+ ...||.
T Consensus 11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~--~~~fC~ 47 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPDQSKKICPNCGAENPP--NAKFCP 47 (50)
T ss_pred cccCChhhcCChhhccCCCCCCcCCcCCCcC--CcCccC
Confidence 3577888987554 569999998544 667775
No 113
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=31.74 E-value=59 Score=23.59 Aligned_cols=35 Identities=23% Similarity=0.491 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHH---H-hcCCC-CcHHHHHHHHHH
Q 015838 150 RMRETCRIAREVLDAAA---R-MIRPG-VTTDEIDRVVHE 184 (399)
Q Consensus 150 ~~R~A~~ia~~~l~~~~---~-~i~pG-vTe~Ei~~~v~~ 184 (399)
.+.+|++|+.+++..-. + .+.-| +|+.|++++++-
T Consensus 10 GYe~aa~iAk~A~~~g~svre~v~~~g~lt~ee~d~ll~p 49 (55)
T PF10415_consen 10 GYEKAAEIAKEALAEGRSVREVVLEEGLLTEEELDELLDP 49 (55)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHTTSS-HHHHHHHTSH
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHcCH
Confidence 57889999999887632 2 34556 799999988753
No 114
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=31.31 E-value=2.4e+02 Score=28.65 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=38.8
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCCCCcCCCCCeEEEEEeeEeCCEEece----eeE
Q 015838 172 GVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDL----NET 247 (399)
Q Consensus 172 GvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~----~RT 247 (399)
-+|+.+|++.+.+....++-+-. -++++++.||.|.+|+....+|=.-+- ..+
T Consensus 119 ~vtde~vd~~i~~l~~~~a~~~~-----------------------~~~~~~~~gD~V~v~~~~~~dg~~~~~~~~~~~~ 175 (408)
T TIGR00115 119 EVTDEDVDEELEKLREQNATLVP-----------------------VERRAAEKGDRVTIDFEGFIDGEAFEGGKAENFS 175 (408)
T ss_pred CCCHHHHHHHHHHHHHhCCcccc-----------------------ccccccCCCCEEEEEEEEEECCEECcCCCCCCeE
Confidence 35888889888887766553210 023578999999999998877644332 236
Q ss_pred EEeCC
Q 015838 248 YFVGN 252 (399)
Q Consensus 248 ~~vG~ 252 (399)
|.+|.
T Consensus 176 ~~lg~ 180 (408)
T TIGR00115 176 LELGS 180 (408)
T ss_pred EEECC
Confidence 66763
No 115
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=31.26 E-value=22 Score=30.47 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=20.6
Q ss_pred cccccccCCccccccc--hhhccCCCCCCccccChhHhhhh
Q 015838 12 SLSCVRCGKPAHLQCP--KCMELKLPREGAAFCTQDCFKAS 50 (399)
Q Consensus 12 ~~~c~~c~~~~~l~c~--~c~~~~~~~~~~~~c~q~cf~~~ 50 (399)
..+|..||...---.- --.+-|. .-+|||..|.|..
T Consensus 4 ~e~CsFcG~kIyPG~G~~fVR~DGk---vf~FcssKC~k~f 41 (131)
T PRK14891 4 TRTCDYTGEEIEPGTGTMFVRKDGT---VLHFVDSKCEKNY 41 (131)
T ss_pred eeeecCcCCcccCCCCcEEEecCCC---EEEEecHHHHHHH
Confidence 4679889985531000 0122222 3689999997544
No 116
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=30.79 E-value=25 Score=22.99 Aligned_cols=21 Identities=24% Similarity=0.784 Sum_probs=13.4
Q ss_pred cccccccCC------------ccccccchhhcc
Q 015838 12 SLSCVRCGK------------PAHLQCPKCMEL 32 (399)
Q Consensus 12 ~~~c~~c~~------------~~~l~c~~c~~~ 32 (399)
...|..|+. ...++||.|...
T Consensus 2 ~~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~ 34 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDSQLGANGGKVRCGKCGHV 34 (38)
T ss_pred EEECCCCCCEEEeCHHHcCCCCCEEECCCCCCE
Confidence 456777876 112788888753
No 117
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=30.02 E-value=17 Score=25.64 Aligned_cols=37 Identities=27% Similarity=0.643 Sum_probs=23.8
Q ss_pred cccccCC-ccc---cccchhhccCCCCCCccccChhHhhhhh--HHHHHhh
Q 015838 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKASW--TSHKSVH 58 (399)
Q Consensus 14 ~c~~c~~-~~~---l~c~~c~~~~~~~~~~~~c~q~cf~~~w--~~hk~~h 58 (399)
.|.+|.+ +.. .+|-.|.+ |---++||...= ..|+.-|
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d--------ydLC~~Cf~~~~~~~~H~~~H 44 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRD--------YSLCLGCYTKGRETKRHNSLH 44 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCC--------cCchHHHHhCCCcCCCCCCCC
Confidence 5888988 554 77888854 333679997552 3454444
No 118
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=29.63 E-value=22 Score=25.86 Aligned_cols=21 Identities=43% Similarity=0.989 Sum_probs=14.4
Q ss_pred cccccCCccc-------------cccchhhccCC
Q 015838 14 SCVRCGKPAH-------------LQCPKCMELKL 34 (399)
Q Consensus 14 ~c~~c~~~~~-------------l~c~~c~~~~~ 34 (399)
.|..||+.+. |-||.|++..+
T Consensus 6 ~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~Etl 39 (55)
T PF14205_consen 6 LCPICGNKTRLKIREDTVLKNFPLYCPKCKQETL 39 (55)
T ss_pred ECCCCCCccceeeecCceeccccccCCCCCceEE
Confidence 5788886432 55998888755
No 119
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=29.58 E-value=25 Score=24.37 Aligned_cols=20 Identities=25% Similarity=0.723 Sum_probs=14.0
Q ss_pred cccccccCCcc------ccccchhhc
Q 015838 12 SLSCVRCGKPA------HLQCPKCME 31 (399)
Q Consensus 12 ~~~c~~c~~~~------~l~c~~c~~ 31 (399)
..+|..||.+. .++||.|--
T Consensus 2 ~Y~C~~Cg~~~~~~~~~~irC~~CG~ 27 (44)
T smart00659 2 IYICGECGRENEIKSKDVVRCRECGY 27 (44)
T ss_pred EEECCCCCCEeecCCCCceECCCCCc
Confidence 35788899844 377888753
No 120
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=29.36 E-value=27 Score=23.00 Aligned_cols=20 Identities=25% Similarity=0.796 Sum_probs=13.2
Q ss_pred cccccccCC------------ccccccchhhc
Q 015838 12 SLSCVRCGK------------PAHLQCPKCME 31 (399)
Q Consensus 12 ~~~c~~c~~------------~~~l~c~~c~~ 31 (399)
.-.|..|+. ..+++|+.|..
T Consensus 2 ~i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEKIPPKGRKVRCSKCGH 33 (36)
T ss_pred EEECCCCCCEEeCCHHHCCCCCcEEECCCCCC
Confidence 445777775 22388998864
No 121
>PF04181 RPAP2_Rtr1: Rtr1/RPAP2 family; InterPro: IPR007308 This entry represents a domain found in PAP2 (RNAP II associated polypeptide) protein and the yeast Rtr1 proteins. Its function is not known however it is thought to be a zinc finger.
Probab=29.22 E-value=28 Score=27.06 Aligned_cols=12 Identities=58% Similarity=1.423 Sum_probs=10.5
Q ss_pred ccccChhHhhhh
Q 015838 39 AAFCTQDCFKAS 50 (399)
Q Consensus 39 ~~~c~q~cf~~~ 50 (399)
+.|||..||+++
T Consensus 59 ~~fCS~~C~~~s 70 (79)
T PF04181_consen 59 SKFCSKDCYKAS 70 (79)
T ss_pred cCcCCHHHHHHH
Confidence 479999999886
No 122
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=28.42 E-value=30 Score=21.22 Aligned_cols=17 Identities=35% Similarity=0.995 Sum_probs=11.2
Q ss_pred cccccCCccc---cccchhh
Q 015838 14 SCVRCGKPAH---LQCPKCM 30 (399)
Q Consensus 14 ~c~~c~~~~~---l~c~~c~ 30 (399)
.|..|++... ..||.|-
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG 21 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCG 21 (26)
T ss_pred cCCCCcCCchhhcCcCCCCC
Confidence 5777887654 5677663
No 123
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=28.37 E-value=42 Score=33.05 Aligned_cols=49 Identities=16% Similarity=0.372 Sum_probs=35.0
Q ss_pred CCCCccccccccccccCCccc----cccchhhccCCCCCCccccChhHhhhhhHHHHH
Q 015838 3 GGSDAAETTSLSCVRCGKPAH----LQCPKCMELKLPREGAAFCTQDCFKASWTSHKS 56 (399)
Q Consensus 3 ~~~~~~~~~~~~c~~c~~~~~----l~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~ 56 (399)
=..+..+..-..|..|..+.. ++|+-|...-.+ .||.+|....=..+-.
T Consensus 234 v~~~l~~~~~~~C~~C~~p~~~~~~~~~~~~~~~~~~-----~C~~ec~~~~~~r~~e 286 (308)
T COG1054 234 VPIGLVEGDHTPCDNCRNPLCNLLFISCEYCEGKYCG-----CCSDECSEEPRLRYEE 286 (308)
T ss_pred ccCcccCCCcchhhhcCCCCCHHHhhcchhhhcccCC-----CccHHHhhhhhhHHHH
Confidence 344555666678999999886 778988866554 8999999776443433
No 124
>PRK00420 hypothetical protein; Validated
Probab=27.72 E-value=25 Score=29.58 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=17.5
Q ss_pred ccccccccccCC------ccccccchhhcc
Q 015838 9 ETTSLSCVRCGK------PAHLQCPKCMEL 32 (399)
Q Consensus 9 ~~~~~~c~~c~~------~~~l~c~~c~~~ 32 (399)
.+.+..|..||- ....+||.|.+.
T Consensus 20 ~ml~~~CP~Cg~pLf~lk~g~~~Cp~Cg~~ 49 (112)
T PRK00420 20 KMLSKHCPVCGLPLFELKDGEVVCPVHGKV 49 (112)
T ss_pred HHccCCCCCCCCcceecCCCceECCCCCCe
Confidence 445677999985 334789999874
No 125
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=27.71 E-value=1.4e+02 Score=24.45 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=49.1
Q ss_pred EEEEEeeEeCCEEeceeeEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCC-------cHHHHHHHHHHHHHHcCCc
Q 015838 229 VNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGV-------RFREIGEVINRHATMSGFS 298 (399)
Q Consensus 229 V~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~~i~~lkPG~-------~~~eI~~ai~~~~~~~G~~ 298 (399)
..+|+.+.+.+|- .+++.+.+- -..+..+.++...+.....+..+--|+ +-.+..+.|.+.+++.||-
T Consensus 23 ~V~DV~veHp~YG-~i~~~L~i~-sr~Dv~~Fi~~l~~~~~~~Ls~LT~GvH~HtI~a~~~e~l~~I~~~L~~~G~L 97 (98)
T PF02829_consen 23 RVLDVIVEHPVYG-EITGNLNIS-SRRDVDKFIEKLEKSKAKPLSSLTGGVHYHTIEAPDEEDLDKIEEALKKKGFL 97 (98)
T ss_dssp EEEEEEEEETTTE-EEEEEEEE--SHHHHHHHHHHHHH--S--STTGGGGEEEEEEEESSHHHHHHHHHHHHHTT-B
T ss_pred EEEEEEEeCCCCc-EEEEEEecC-CHHHHHHHHHHHhccCCcchHHhcCCEeeEEEEECCHHHHHHHHHHHHHCCCc
Confidence 4458999999988 999999994 356677777777777666777777774 4578899999999999973
No 126
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=27.46 E-value=35 Score=37.33 Aligned_cols=31 Identities=26% Similarity=0.624 Sum_probs=24.3
Q ss_pred cccccccCCccc-cccchhhccCCCCCCccccCh
Q 015838 12 SLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQ 44 (399)
Q Consensus 12 ~~~c~~c~~~~~-l~c~~c~~~~~~~~~~~~c~q 44 (399)
.+.|..||.+-. ..||.|-+..-+ ..-||.+
T Consensus 15 akFC~~CG~~l~~~~Cp~CG~~~~~--~~~fC~~ 46 (645)
T PRK14559 15 NRFCQKCGTSLTHKPCPQCGTEVPV--DEAHCPN 46 (645)
T ss_pred CccccccCCCCCCCcCCCCCCCCCc--ccccccc
Confidence 356999998765 789999998665 6778865
No 127
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=27.42 E-value=1e+02 Score=23.86 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=29.7
Q ss_pred cCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCCccccCCCCCCcCCCCCeEEE
Q 015838 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNI 231 (399)
Q Consensus 169 i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDiV~i 231 (399)
++.|.|-.+++..+|.-+.+.=.+ ..-.+ ......+..|++||+|.|
T Consensus 28 l~~g~tv~d~a~~IH~d~~~~F~~-----------A~v~~-----~~~vg~d~~l~d~DVv~i 74 (76)
T cd04938 28 VKKGTTVGDVARKIHGDLEKGFIE-----------AVGGR-----RRLEGKDVILGKNDILKF 74 (76)
T ss_pred EcCCCCHHHHHHHHhHHHHhccEE-----------EEEcc-----CEEECCCEEecCCCEEEE
Confidence 456889999999999766543111 11111 122234678999999987
No 128
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=26.88 E-value=31 Score=20.83 Aligned_cols=8 Identities=38% Similarity=1.190 Sum_probs=5.8
Q ss_pred ccccchhh
Q 015838 23 HLQCPKCM 30 (399)
Q Consensus 23 ~l~c~~c~ 30 (399)
...||.|-
T Consensus 16 ~f~CPnCG 23 (24)
T PF07754_consen 16 PFPCPNCG 23 (24)
T ss_pred eEeCCCCC
Confidence 37788884
No 129
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=26.81 E-value=27 Score=24.16 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=9.4
Q ss_pred ccccChhHhhhh
Q 015838 39 AAFCTQDCFKAS 50 (399)
Q Consensus 39 ~~~c~q~cf~~~ 50 (399)
=+|||+.|-...
T Consensus 25 Y~FCS~~C~~~F 36 (47)
T PF04945_consen 25 YYFCSEGCKEKF 36 (47)
T ss_dssp EEESSHHHHHHH
T ss_pred EEEcCHHHHHHH
Confidence 489999997554
No 130
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=25.08 E-value=22 Score=25.24 Aligned_cols=29 Identities=31% Similarity=0.820 Sum_probs=19.5
Q ss_pred cccccCC-ccc---cccchhhccCCCCCCccccChhHhhhh
Q 015838 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKAS 50 (399)
Q Consensus 14 ~c~~c~~-~~~---l~c~~c~~~~~~~~~~~~c~q~cf~~~ 50 (399)
.|.+|++ +.. .+|-.|.... --|+||...
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~D--------LC~~Cf~~g 34 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYD--------LCQSCFFSG 34 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcC--------chHHHHhCC
Confidence 5888986 343 7788887533 368899653
No 131
>PF09506 Salt_tol_Pase: Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase); InterPro: IPR012765 Proteins in this family are glucosylglycerol-phosphate phosphatases, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=24.79 E-value=2.5e+02 Score=28.34 Aligned_cols=52 Identities=12% Similarity=0.248 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCC
Q 015838 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPS 194 (399)
Q Consensus 143 Ks~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps 194 (399)
-|+.||+.+-++-..-+..+..-...+-|..+..||...++..+.+.-+.|.
T Consensus 97 Vs~~El~FLa~vP~~m~~~L~~~l~~~~p~l~~~~i~~~~~~sVldt~~SPT 148 (381)
T PF09506_consen 97 VSDAELAFLAAVPERMEALLKEFLPAILPELSQEEIEKLIEASVLDTRVSPT 148 (381)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCcccCHHHHHHHHHHHHhcCCCCCc
Confidence 3789999999999999999999999999999999999999999988776664
No 132
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=24.55 E-value=23 Score=29.56 Aligned_cols=23 Identities=26% Similarity=0.813 Sum_probs=15.0
Q ss_pred cccccccCCccc-----cccchhhccCC
Q 015838 12 SLSCVRCGKPAH-----LQCPKCMELKL 34 (399)
Q Consensus 12 ~~~c~~c~~~~~-----l~c~~c~~~~~ 34 (399)
...|..||+.-. ..||.|....+
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGSPDV 97 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSSS-E
T ss_pred cEECCCCCCEEecCCCCCCCcCCcCCCc
Confidence 456999998553 67999987654
No 133
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=24.50 E-value=25 Score=24.57 Aligned_cols=35 Identities=29% Similarity=0.786 Sum_probs=23.1
Q ss_pred cccccCC-ccc---cccchhhccCCCCCCccccChhHhhhhhHHHHHhh
Q 015838 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (399)
Q Consensus 14 ~c~~c~~-~~~---l~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h 58 (399)
.|.+|+. +.. .+|-.|.+ |-.-+.||.. +.|..-|
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~d--------yDLC~~Cf~~--~~H~~~H 40 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDD--------FDFCENCFKT--RKHNTRH 40 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCC--------ccchHHhhCC--CCcCCCC
Confidence 5888886 443 77888874 3446889987 3454444
No 134
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=24.43 E-value=38 Score=35.64 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=45.9
Q ss_pred CCCeEEEEEeeEeCCEEeceeeEEEeCC--------CCHHHHHH--HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 015838 225 DGDIVNIDVTVYYKGVHGDLNETYFVGN--------ADEASRQL--VQCTYECLEKAISIVKPGVRFREIGEVINRHAT 293 (399)
Q Consensus 225 ~GDiV~iD~g~~~~GY~~D~~RT~~vG~--------~~~~~~~l--~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~ 293 (399)
.+|.-.+-+++.|.||++|+++-|+.|- .-+..... -...-+..-..++.++||..-.++-.+.++++.
T Consensus 583 snD~taLvvS~aYkG~WsDLsELWFLGMQt~~G~lPLvPWLs~~AL~S~W~e~ivk~L~kVk~~tl~~nv~sAYe~~L~ 661 (698)
T KOG2611|consen 583 SNDPTALVVSIAYKGYWSDLSELWFLGMQTMCGVLPLVPWLSEFALESGWAEGIVKTLKKVKIGTLPANVKSAYEDFLS 661 (698)
T ss_pred cCCCceEEeehhhhhhhhhHHHHHHHhHHHHcCcccchhhhcHHHHhcccHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 3677778899999999999999999871 11222211 112233444567788999877777776666544
No 135
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=24.35 E-value=40 Score=21.74 Aligned_cols=17 Identities=35% Similarity=1.118 Sum_probs=11.6
Q ss_pred cccccCCccc------cccchhh
Q 015838 14 SCVRCGKPAH------LQCPKCM 30 (399)
Q Consensus 14 ~c~~c~~~~~------l~c~~c~ 30 (399)
+|..||.... ++||.|-
T Consensus 2 ~C~~Cg~~~~~~~~~~irC~~CG 24 (32)
T PF03604_consen 2 ICGECGAEVELKPGDPIRCPECG 24 (32)
T ss_dssp BESSSSSSE-BSTSSTSSBSSSS
T ss_pred CCCcCCCeeEcCCCCcEECCcCC
Confidence 5778887543 6788774
No 136
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=24.30 E-value=39 Score=22.97 Aligned_cols=23 Identities=26% Similarity=0.830 Sum_probs=16.1
Q ss_pred ccccccCC----------ccccccchhhccCCC
Q 015838 13 LSCVRCGK----------PAHLQCPKCMELKLP 35 (399)
Q Consensus 13 ~~c~~c~~----------~~~l~c~~c~~~~~~ 35 (399)
.+|..||. .....||.|....+.
T Consensus 6 y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~~~~ 38 (42)
T PF09723_consen 6 YRCEECGHEFEVLQSISEDDPVPCPECGSTEVR 38 (42)
T ss_pred EEeCCCCCEEEEEEEcCCCCCCcCCCCCCCceE
Confidence 56888884 234789999885543
No 137
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=24.23 E-value=35 Score=38.64 Aligned_cols=33 Identities=33% Similarity=0.688 Sum_probs=26.7
Q ss_pred ccccccccccccCCccc-cccchhhccCCCCCCcccc
Q 015838 7 AAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFC 42 (399)
Q Consensus 7 ~~~~~~~~c~~c~~~~~-l~c~~c~~~~~~~~~~~~c 42 (399)
.++...|+|..||+.+- .+||.|-..-.+ .++|
T Consensus 620 ~vev~~RKCPkCG~yTlk~rCP~CG~~Te~---~~pc 653 (1095)
T TIGR00354 620 EVEIAIRKCPQCGKESFWLKCPVCGELTEQ---LYYG 653 (1095)
T ss_pred EEEEEEEECCCCCcccccccCCCCCCcccc---ccce
Confidence 45666799999999885 899999987544 6889
No 138
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=24.18 E-value=3.7e+02 Score=23.18 Aligned_cols=101 Identities=17% Similarity=0.112 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeeCCCC----ccccCCCCCCcCCC
Q 015838 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE----VICHGIPDSRKLED 225 (399)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps~l~~~~fp~~v~~g~n~----~~~Hg~p~~r~L~~ 225 (399)
.++-+|+|+++++..-.+.+.-.-++ +....+.+.+...... | |-+-...|... .+.-+. ++..-..
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~-~~a~~lD~~LW~~~~~-s------FlPH~~~~~~~~~~~PV~l~~-~~~~~~~ 84 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE-EQAEALDEALWTFRDE-S------FLPHGLAGEGPAAGQPVLLTW-PGKRNAN 84 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHHHHhcCCCCC-c------CCCCCcCCCCCCCCCCEEEEc-CCCCCCC
Confidence 78889999999988766655444444 4667777777754322 1 21111111110 011010 1111123
Q ss_pred CCeEEEEEeeEeCCEEeceeeEEEe-CCCCHHHHHH
Q 015838 226 GDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQL 260 (399)
Q Consensus 226 GDiV~iD~g~~~~GY~~D~~RT~~v-G~~~~~~~~l 260 (399)
++-|+|.+....-.+.+...|.+-+ |. +++.++.
T Consensus 85 ~~~~LinL~~~~p~~~~~F~Rvieiv~~-d~~~~~~ 119 (142)
T PRK05728 85 HRDLLINLDGAVPAFAAAFERVVDFVGY-DEAAKQA 119 (142)
T ss_pred CCcEEEECCCCCcchhhcccEEEEEeCC-CHHHHHH
Confidence 4556776777777777888888665 43 5554443
No 139
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=24.13 E-value=57 Score=25.47 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCC----CCcHHHHHHHHHHHHHHcCC
Q 015838 160 EVLDAAARMIRP----GVTTDEIDRVVHEATITAGG 191 (399)
Q Consensus 160 ~~l~~~~~~i~p----GvTe~Ei~~~v~~~~~~~G~ 191 (399)
++...+...+.- ++|+.||..++...+.+.|.
T Consensus 39 ~i~~~V~~~l~~~~~~~is~~eI~~~v~~~L~~~~~ 74 (90)
T PF03477_consen 39 EIASEVENKLYDSGKEEISTEEIQDIVENALMEEGF 74 (90)
T ss_dssp HHHHHHHTC-ST----TEEHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHhccCCCeeHHHHHHHHHHHHHcCCh
Confidence 333444444444 99999999999999997663
No 140
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=24.12 E-value=35 Score=24.85 Aligned_cols=21 Identities=33% Similarity=0.860 Sum_probs=16.6
Q ss_pred ccccccccCCccc-----cccchhhc
Q 015838 11 TSLSCVRCGKPAH-----LQCPKCME 31 (399)
Q Consensus 11 ~~~~c~~c~~~~~-----l~c~~c~~ 31 (399)
...+|..||+.-+ .+||.|..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~Cga 29 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGA 29 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCC
Confidence 3567999999774 78999975
No 141
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=24.11 E-value=1.8e+02 Score=22.03 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 015838 253 ADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (399)
Q Consensus 253 ~~~~~~~l~~~~~ea~~~~i~~lkPG~~~~eI~~ai~~~~~~ 294 (399)
.+.+++.+++.+.+.+..+++.++.|.+..=+...++..++.
T Consensus 10 ~~~Rq~~~L~~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~ 51 (73)
T PF12631_consen 10 TNARQRQLLEQALEHLEDALEALENGLPLDLVAEDLREALES 51 (73)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999997765555555555443
No 142
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=24.06 E-value=37 Score=29.14 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=15.2
Q ss_pred cccccccCCcc------ccccchhhcc
Q 015838 12 SLSCVRCGKPA------HLQCPKCMEL 32 (399)
Q Consensus 12 ~~~c~~c~~~~------~l~c~~c~~~ 32 (399)
+|.|.+||+-- -..||.|...
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~~ 35 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGEQ 35 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCCc
Confidence 58899998722 2678888766
No 143
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=23.96 E-value=39 Score=22.29 Aligned_cols=20 Identities=30% Similarity=0.924 Sum_probs=12.5
Q ss_pred cccccccCC------------ccccccchhhc
Q 015838 12 SLSCVRCGK------------PAHLQCPKCME 31 (399)
Q Consensus 12 ~~~c~~c~~------------~~~l~c~~c~~ 31 (399)
...|..|+. ...++||.|..
T Consensus 2 ~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~ 33 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKLPAGGRKVRCPKCGH 33 (37)
T ss_pred EEECCCCCceEEcCHHHcccCCcEEECCCCCc
Confidence 445777764 22378888864
No 144
>PF05142 DUF702: Domain of unknown function (DUF702) ; InterPro: IPR007818 This is a family of plant proteins of unknown function.
Probab=23.95 E-value=34 Score=30.32 Aligned_cols=21 Identities=33% Similarity=0.888 Sum_probs=15.3
Q ss_pred cccccccCCccccc-----cchhhcc
Q 015838 12 SLSCVRCGKPAHLQ-----CPKCMEL 32 (399)
Q Consensus 12 ~~~c~~c~~~~~l~-----c~~c~~~ 32 (399)
...|+-||++|++- |-+|-|.
T Consensus 4 g~~CqdCGNqAkk~C~~~rCRtCCk~ 29 (154)
T PF05142_consen 4 GISCQDCGNQAKKDCSHRRCRTCCKS 29 (154)
T ss_pred CcchhhhcchhhcCCCcchhhhhhcc
Confidence 35799999999854 5566553
No 145
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=23.86 E-value=39 Score=28.29 Aligned_cols=23 Identities=30% Similarity=0.738 Sum_probs=16.1
Q ss_pred cccccccCCccc-----cccchhhccCC
Q 015838 12 SLSCVRCGKPAH-----LQCPKCMELKL 34 (399)
Q Consensus 12 ~~~c~~c~~~~~-----l~c~~c~~~~~ 34 (399)
.-.|..||.... +.||.|...++
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCHGERL 97 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCCCCCc
Confidence 456888997432 56999987654
No 146
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=23.42 E-value=26 Score=24.71 Aligned_cols=29 Identities=28% Similarity=0.707 Sum_probs=19.7
Q ss_pred cccccC-Cccc---cccchhhccCCCCCCccccChhHhhhh
Q 015838 14 SCVRCG-KPAH---LQCPKCMELKLPREGAAFCTQDCFKAS 50 (399)
Q Consensus 14 ~c~~c~-~~~~---l~c~~c~~~~~~~~~~~~c~q~cf~~~ 50 (399)
.|.+|+ ++.. .+|-.|.+ |---++||...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d--------~dlC~~Cf~~~ 34 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYD--------YDLCADCYDSG 34 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCC--------CccchhHHhCC
Confidence 588898 4553 67888854 33367999765
No 147
>TIGR02399 salt_tol_Pase glucosylglycerol 3-phosphatase. Proteins in this family are glucosylglycerol-phosphate phosphatase, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=23.04 E-value=2.7e+02 Score=28.14 Aligned_cols=52 Identities=13% Similarity=0.281 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCC
Q 015838 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPS 194 (399)
Q Consensus 143 Ks~~EIe~~R~A~~ia~~~l~~~~~~i~pGvTe~Ei~~~v~~~~~~~G~~ps 194 (399)
-|+.||+.+-++-..-+..+..-...+-|..+..||...++..+.+.-+.|.
T Consensus 103 Vs~~El~FLa~vP~~m~~~L~~~l~~~~p~l~~~~i~~~~~~aVldt~~SPT 154 (389)
T TIGR02399 103 VSKEEVDFLAAVPDLMRPSLEQIVKKIFPNLVQEEIQTHASKSVLDTRFSPT 154 (389)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCcccCHHHHHHHHHHHHhcCCCCCc
Confidence 3789999999999999999999999999999999999999999988776664
No 148
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.53 E-value=45 Score=30.36 Aligned_cols=39 Identities=26% Similarity=0.582 Sum_probs=23.8
Q ss_pred cccccc---cCCccccccchhhccCCCCC------CccccChhHhhhhh
Q 015838 12 SLSCVR---CGKPAHLQCPKCMELKLPRE------GAAFCTQDCFKASW 51 (399)
Q Consensus 12 ~~~c~~---c~~~~~l~c~~c~~~~~~~~------~~~~c~q~cf~~~w 51 (399)
.+.|.. -.|.+...||.|+.---... +-.||+| |.|.+-
T Consensus 117 ~~~~k~v~~~~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~-Cik~al 164 (187)
T KOG0320|consen 117 NRRDKDVDPLRKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQ-CIKDAL 164 (187)
T ss_pred CcccccccccccccccCCCceecchhhccccccccchhHHHH-HHHHHH
Confidence 455655 45566688999986543321 2257764 888763
No 149
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=22.34 E-value=43 Score=28.05 Aligned_cols=23 Identities=30% Similarity=0.859 Sum_probs=16.6
Q ss_pred cccccccCCccc-----cccchhhccCC
Q 015838 12 SLSCVRCGKPAH-----LQCPKCMELKL 34 (399)
Q Consensus 12 ~~~c~~c~~~~~-----l~c~~c~~~~~ 34 (399)
.-.|..||+... ..||.|....+
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (115)
T TIGR00100 70 ECECEDCSEEVSPEIDLYRCPKCHGIML 97 (115)
T ss_pred EEEcccCCCEEecCCcCccCcCCcCCCc
Confidence 456988998542 66999987654
No 150
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=20.78 E-value=38 Score=28.38 Aligned_cols=21 Identities=33% Similarity=0.815 Sum_probs=15.3
Q ss_pred cccccccCCccc-----cccchhhcc
Q 015838 12 SLSCVRCGKPAH-----LQCPKCMEL 32 (399)
Q Consensus 12 ~~~c~~c~~~~~-----l~c~~c~~~ 32 (399)
+-.|.+|+|+++ -+|+-|.+.
T Consensus 69 ~V~CP~C~K~TKmLGr~D~CM~C~~p 94 (114)
T PF11023_consen 69 QVECPNCGKQTKMLGRVDACMHCKEP 94 (114)
T ss_pred eeECCCCCChHhhhchhhccCcCCCc
Confidence 356999999885 458877654
No 151
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.68 E-value=52 Score=21.59 Aligned_cols=19 Identities=32% Similarity=0.908 Sum_probs=13.6
Q ss_pred ccccccCC----------ccccccchhhc
Q 015838 13 LSCVRCGK----------PAHLQCPKCME 31 (399)
Q Consensus 13 ~~c~~c~~----------~~~l~c~~c~~ 31 (399)
.+|..||+ .....||.|..
T Consensus 6 y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 6 YRCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred EEcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 46888887 22367999987
No 152
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=20.31 E-value=32 Score=23.94 Aligned_cols=35 Identities=23% Similarity=0.571 Sum_probs=22.0
Q ss_pred cccccCC-cc---ccccchhhccCCCCCCccccChhHhhhhhHHHHHhh
Q 015838 14 SCVRCGK-PA---HLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (399)
Q Consensus 14 ~c~~c~~-~~---~l~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h 58 (399)
.|.+|++ +. ..+|-.|.+ |---++||.. +.|+.-|
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~d--------yDLC~~C~~~--~~H~~~H 40 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPN--------YDLCTTCYHG--DKHDLEH 40 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCC--------ccchHHHhCC--CCCCCCC
Confidence 5888985 33 277888864 3346889974 3454444
No 153
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=20.18 E-value=52 Score=22.02 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=19.8
Q ss_pred ccccCCccccccchhhccCCCCCCccccChhHhhhh
Q 015838 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKAS 50 (399)
Q Consensus 15 c~~c~~~~~l~c~~c~~~~~~~~~~~~c~q~cf~~~ 50 (399)
|.-||++..-. |.=.|.+-. .-|||...|.++.
T Consensus 1 Cd~CG~~I~~e-P~~~k~~~~--~y~fCC~tC~~~f 33 (37)
T PF08394_consen 1 CDYCGGEITGE-PIVVKIGNK--VYYFCCPTCLSQF 33 (37)
T ss_pred CCccCCcccCC-EEEEEECCe--EEEEECHHHHHHH
Confidence 55577766422 444444443 4689999998654
No 154
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=20.17 E-value=35 Score=24.51 Aligned_cols=23 Identities=26% Similarity=0.885 Sum_probs=15.9
Q ss_pred ccccccCC---c------cccccchhhccCCC
Q 015838 13 LSCVRCGK---P------AHLQCPKCMELKLP 35 (399)
Q Consensus 13 ~~c~~c~~---~------~~l~c~~c~~~~~~ 35 (399)
-.|..|+| . ..++||.|..++.-
T Consensus 5 iRC~~CnklLa~~g~~~~leIKCpRC~tiN~~ 36 (51)
T PF10122_consen 5 IRCGHCNKLLAKAGEVIELEIKCPRCKTINHV 36 (51)
T ss_pred eeccchhHHHhhhcCccEEEEECCCCCccceE
Confidence 45877876 1 13779999988763
Done!