RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015838
(399 letters)
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 227 bits (579), Expect = 3e-73
Identities = 117/251 (46%), Positives = 156/251 (62%), Gaps = 2/251 (0%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S +
Sbjct: 1 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 60
Query: 200 F-FPKSCCTSVNEVICHGIP-DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
+PKS C S+NEV+CHGIP D++ L+DGDIVNIDVTV G HGD ++ + VG
Sbjct: 61 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 120
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG FH P
Sbjct: 121 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQ 180
Query: 318 IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTE 377
+ HY + V+K G TFTIEPM+NAG R DGWT T D SAQ+EHT++VT+
Sbjct: 181 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTD 240
Query: 378 TGVEVLTARLP 388
G E+LT R
Sbjct: 241 NGCEILTLRKD 251
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 203 bits (516), Expect = 5e-64
Identities = 99/246 (40%), Positives = 145/246 (58%), Gaps = 1/246 (0%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
+ IKTP +IE+M++ + L ++I PG T +++ +V E P+ Y
Sbjct: 2 IRIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYG 61
Query: 200 FFPKSCCTSVNEVICHGIPD-SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
+ + C SVNE + HG+P + ++GDIV++DV Y+G++GD TY VG DE +
Sbjct: 62 GYKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGK 121
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNI 318
+LV+ T E LEKAI ++KPG+R ++ I GF+V++ Y GHG+G H P I
Sbjct: 122 ELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQI 181
Query: 319 PHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTET 378
P+Y V++ G T IEPM++ G WR + DGWTAVT DG R A FEHT+L+TE
Sbjct: 182 PNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITEN 241
Query: 379 GVEVLT 384
G E+LT
Sbjct: 242 GAEILT 247
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 169 bits (428), Expect = 2e-50
Identities = 51/255 (20%), Positives = 85/255 (33%), Gaps = 23/255 (9%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
++ + + RE R+V I+PG+T EI + + +
Sbjct: 49 LDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGL 108
Query: 200 FFPKSCCTSVNEVI-CHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
FP C + D+ L+ DI ID + G D F +
Sbjct: 109 AFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIID---CAFTVTFNPKYD 165
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSG---------FSVVKSYCGHGIG 309
L++ + I VR ++GE I +++ GH IG
Sbjct: 166 TLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIG 225
Query: 310 ELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQF 369
+ A + M+ G+ + IE + G V G +AQF
Sbjct: 226 QYRIHAGKTVPIVKGGEATRMEEGEVYAIETFGS----------TGKGVVDIKGSYTAQF 275
Query: 370 EHTLLVTETGVEVLT 384
EHT+L+ T EV++
Sbjct: 276 EHTILLRPTCKEVVS 290
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 158 bits (399), Expect = 1e-46
Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 2/245 (0%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFF 201
+KT ++++ ++E I +V + +PG+TT E+D + E G +P++ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 202 PKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADE-ASRQL 260
P C SVNE + HGIP R + +GD+VNIDV+ G + D ++ VG +D+ +++
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 261 VQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPH 320
E AI+ VKPG + IG+ ++ A + V+K+ GHG+G H AP
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVL 182
Query: 321 YSRNKAVG-VMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETG 379
+ ++ G IEP I++ + W T+D AQ EHT++VT+ G
Sbjct: 183 NYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDG 242
Query: 380 VEVLT 384
+ T
Sbjct: 243 PILTT 247
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 143 bits (360), Expect = 9e-41
Identities = 52/264 (19%), Positives = 93/264 (35%), Gaps = 29/264 (10%)
Query: 145 PDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKS 204
P++I +R I A RPG+ ++ +H G Y +
Sbjct: 2 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGA-----RYPSYNTI 56
Query: 205 CCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQC 263
+ N I H + ++ DGD+V ID YKG GD+ T+ V G +A R++
Sbjct: 57 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 116
Query: 264 TYECLEKAISIVKPGVRFREIGEVINRHAT---------------MSGFSVVKSYCGHGI 308
E LE ++ + +PG E+ + R + + + + HG+
Sbjct: 117 VLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGL 176
Query: 309 GELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQ 368
+ +++ G T+ P + +
Sbjct: 177 SHWLGLDVHDVGVYGQDRSRILEPGMVLTVAPGL--------YIAPDAEVPEQYRGIGIR 228
Query: 369 FEHTLLVTETGVEVLTARLPSSPK 392
E +++TETG E LTA + P+
Sbjct: 229 IEDDIVITETGNENLTASVVKKPE 252
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 136 bits (342), Expect = 1e-38
Identities = 55/242 (22%), Positives = 92/242 (38%), Gaps = 25/242 (10%)
Query: 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFP 202
KT ++IE + + C IA + + AA I G E+ V G +
Sbjct: 1 KTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPAFDTIIAS 60
Query: 203 KSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQ 262
+ HG+ +++E GD+V ID+ Y + D+ T VG+ +E R++ +
Sbjct: 61 GHRSA-----LPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYE 115
Query: 263 CTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYS 322
E ++A+ KPG+ +E+ + G+ Y H +G +
Sbjct: 116 IVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYG---DYFIHSLGHGVGLEIHEWPRI 172
Query: 323 RNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEV 382
V+K G TIEP I + E T+L+TE G +
Sbjct: 173 SQYDETVLKEGMVITIEPGI-----------------YIPKLGGVRIEDTVLITENGAKR 215
Query: 383 LT 384
LT
Sbjct: 216 LT 217
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 128 bits (321), Expect = 3e-35
Identities = 56/253 (22%), Positives = 95/253 (37%), Gaps = 17/253 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNYHF 200
IK+ ++ +R RIA A + V E+ +A + A +
Sbjct: 2 IKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMD 61
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQL 260
+ +N H +RK+ GDI++++ G + L T F+ + + +L
Sbjct: 62 TWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRL 121
Query: 261 VQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSY-CGHGIGELFH-CAPNI 318
Q E E + ++KPG R +I +N +++ GH G L H
Sbjct: 122 WQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGREA 181
Query: 319 PHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTET 378
R V++ G ++EPMI M P+G G + L+V E
Sbjct: 182 GLELREDIDTVLEPGMVVSMEPMI--------MLPEGLP-----GAGGYREHDILIVNEN 228
Query: 379 GVEVLTARLPSSP 391
G E +T + P P
Sbjct: 229 GAENIT-KFPYGP 240
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 122 bits (306), Expect = 2e-33
Identities = 66/241 (27%), Positives = 102/241 (42%), Gaps = 30/241 (12%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
E++ + IA++V + A ++ RPG+ E+ + + +
Sbjct: 3 TEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIME--------LGGKPAFPVNL 54
Query: 208 SVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCT 264
S+NE+ H P D+ L++GD + IDV V+ G D T VG + +L++
Sbjct: 55 SINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEE---DELMEAA 111
Query: 265 YECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN-IPHYSR 323
E L AIS+ + GV +E+G+ I GF + + GH I A IP+ R
Sbjct: 112 KEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYR 171
Query: 324 NKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVL 383
V+K G F IEP G A AQFEHT++V + V V
Sbjct: 172 PHDNYVLKEGDVFAIEPFATIG---------------ARNGIVAQFEHTIIVEKDSVIVT 216
Query: 384 T 384
T
Sbjct: 217 T 217
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 47
Score = 41.5 bits (97), Expect = 4e-06
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 9 ETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSV 57
E +S SC CG+ A C C A +C C W H +
Sbjct: 5 EDSSESCWNCGRKASETCSGC-------NTARYCGSFCQHKDWEKHHHI 46
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing
protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 39.9 bits (93), Expect = 9e-06
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 14 SCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSV 57
SCV CG+ A +C C +C+ C + W H+ +
Sbjct: 1 SCVNCGREAMSECTGCH-------KVNYCSTFCQRKDWKDHQHI 37
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
protein 10, ZMYND10 {Human (Homo sapiens) [TaxId:
9606]}
Length = 47
Score = 36.9 bits (85), Expect = 2e-04
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 7/52 (13%)
Query: 6 DAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSV 57
+A C C A +C +C + +C ++C W H
Sbjct: 2 EAVAPERPRCAYCSAEASKRCSRC-------QNEWYCCRECQVKHWEKHGKT 46
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 31.9 bits (72), Expect = 0.062
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 269 EKAISIVKP-GVRFREIGEVINRHATMSGFSVVKSYCGHGIGELF--HCAPNIPHYSRNK 325
E+ VKP GV+ R +GE++ R GF +V EL H A +
Sbjct: 5 ERTFLAVKPDGVQRRLVGEIVRR-FERKGFKLVALKLVQASEELLREHYAELRERPFYGR 63
Query: 326 AVGVMKVGQTFTIEPMINAGV--WRDRMWP 353
V M G + V R +
Sbjct: 64 LVKYMASGPVVAMVWQGLDVVRTSRALIGA 93
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 149
Score = 31.5 bits (71), Expect = 0.070
Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 7/109 (6%)
Query: 268 LEKAISIVKP-GVRFREIGEVINRHATMSGFSVVKSYCGHGIGELF--HCAPNIPHYSRN 324
+EK+ ++KP GV+ +G +I R G+ ++ + E+ H
Sbjct: 1 MEKSFIMIKPDGVQRGLVGTIIKR-FEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFK 59
Query: 325 KAVGVMKVGQTFTIEPMINAGV--WRDRMWPDGWTAVTADGKRSAQFEH 371
V + G + V R + + G F
Sbjct: 60 NLVAYISKGPVVAMVWEGVDMVKQGRKLIGETN-PLTSNTGTIRGDFCL 107
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 31.5 bits (71), Expect = 0.093
Identities = 20/91 (21%), Positives = 28/91 (30%), Gaps = 6/91 (6%)
Query: 268 LEKAISIVKP-GVRFREIGEVINRHATMSGFSVVKSYCGHGIGELF--HCAPNIPHYSRN 324
LE+ +KP GV+ +GE+I R GF +V E H
Sbjct: 3 LERTFIAIKPDGVQRGLVGEIIKR-FEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFP 61
Query: 325 KAVGVMKVGQTFTIEPMINAGV--WRDRMWP 353
V M G + V R +
Sbjct: 62 GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGE 92
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 30.3 bits (68), Expect = 0.16
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 268 LEKAISIVKP-GVRFREIGEVINRHATMSGFSVVKSYCGHGIGELF--HCAPNIPHYSRN 324
+E+ ++KP GVR +GE++ R GF + EL H A +
Sbjct: 1 MERTFVMIKPDGVRRGLVGEILAR-FERKGFRIAALKLMQISQELAERHYAEHREKPFFP 59
Query: 325 KAVGVMKVGQTFTIEPMINAGVWRDRMWPDG 355
V + G + V R
Sbjct: 60 GLVRFITSGPVVAMVLEGPGVVAEVRKMMGA 90
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus
halodenitrificans [TaxId: 1482]}
Length = 149
Score = 30.0 bits (67), Expect = 0.24
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 6/90 (6%)
Query: 269 EKAISIVKP-GVRFREIGEVINRHATMSGFSVVKSYCGHG----IGELFHCAPNIPHYSR 323
E+ +VKP GV+ +GEV+ R G + + + P +
Sbjct: 2 ERTFLMVKPDGVQRNLVGEVVKR-FESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 60
Query: 324 NKAVGVMKVGQTFTIEPMINAGVWRDRMWP 353
E + A R +
Sbjct: 61 LVGGATSGPVFAMVWEGLNAAATARQILGA 90
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 28.8 bits (64), Expect = 0.74
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 268 LEKAISIVKP-GVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHC 314
LE+ +KP GV+ I E+I+R GF +V +
Sbjct: 3 LERTFIAIKPDGVQRGLISEIISR-FERKGFKLVGIKVLIPTKQFAQQ 49
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 28.4 bits (63), Expect = 0.85
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 269 EKAISIVKP-GVRFREIGEVINRHATMSGFSVVKSYCGHGIGELF--HCAPNIPHYSRNK 325
E+ + ++KP G+ + IGE+I+R G ++ EL H A +
Sbjct: 2 ERTLVLIKPDGIERQLIGEIISR-IERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGS 60
Query: 326 AVGVMKVGQTFTIEPM 341
+ + G
Sbjct: 61 LLEFITSGPVVAAIVE 76
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 27.1 bits (60), Expect = 1.1
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 106 PISSKLTVPAYIELPDWALDG---TPKVEPN---SDLQHVVEIKTPDQIERMR 152
P+S K+ VP + +W L+G + S ++ + T + +
Sbjct: 1 PVSIKVQVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQK 53
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 27.7 bits (61), Expect = 1.6
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 269 EKAISIVKP-GVRFREIGEVINRHATMSGFSVVKSYCGH 306
E+ +VKP GV+ IG+++ R G +V
Sbjct: 3 ERTFVMVKPDGVQRGLIGDIVTR-LETKGLKMVGGKFMR 40
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 76
Score = 26.2 bits (58), Expect = 2.1
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 198 YHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTV 235
+ K ++N + + +L+ DIV I V+V
Sbjct: 40 HTDLGKGFLYAINARTKRRVGEDYELQFNDIVKI-VSV 76
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 27.3 bits (60), Expect = 2.1
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 268 LEKAISIVKP-GVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFH 313
+E+ ++KP GV+ IGEVI R GF++
Sbjct: 1 MEQTFIMIKPDGVQRGLIGEVICR-FEKKGFTLKGLKLISVERSFAE 46
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha,
PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 25.8 bits (57), Expect = 2.6
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 227 DIVNIDVTVYYKGVHGDL 244
I +DV + Y HGDL
Sbjct: 38 QIPGLDVLLGYTDAHGDL 55
>d1u5ha_ c.1.12.5 (A:) Citrate lyase, beta subunit {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 223
Score = 27.1 bits (59), Expect = 3.1
Identities = 17/139 (12%), Positives = 28/139 (20%), Gaps = 4/139 (2%)
Query: 84 KKGQART--PKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGT--PKVEPNSDLQHV 139
+K AR P +R + L A PK E + + +
Sbjct: 43 QKPAARNALRDTPLDPERTVVRINAGGTADQARDLEALAGTAYTTVMLPKAESAAQVIEL 102
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
+E R A + G + G Y +
Sbjct: 103 APRDVIALVETARGAVCAAEIAAADPTVGMMWGAEDLIATLGGSSSRRADGAYRDVARHV 162
Query: 200 FFPKSCCTSVNEVICHGIP 218
S +
Sbjct: 163 RSTILLAASAFGRLALDAV 181
>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV
{Lactobacillus delbrueckii [TaxId: 1584]}
Length = 272
Score = 27.3 bits (59), Expect = 3.2
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 135 DLQHVVEIKTPDQIERMRETCRIAREVLDAAARMI----RPGVTTDEIDRVVHEATITAG 190
DL+ ++ I + + +E E + + +DA + + R G T+ AG
Sbjct: 19 DLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENFANYAGRVNFGAG 78
Query: 191 GYPSPLNYHF 200
+ H
Sbjct: 79 DKRLGIIGHM 88
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 153
Score = 26.2 bits (57), Expect = 4.9
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 269 EKAISIVKP-GVRFREIGEVINRHATMSGFSVVK 301
E+ + I+KP V IGE+I+R G +V
Sbjct: 3 ERTLVIIKPDAVVRGLIGEIISR-FEKKGLKIVG 35
>d2i09a2 d.327.1.1 (A:108-226) Phosphopentomutase DeoB
{Streptococcus mutans [TaxId: 1309]}
Length = 119
Score = 25.5 bits (56), Expect = 5.9
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 148 IERMRETCRIAREVLDAA----ARMI-RP 171
++ + C AR + R+I RP
Sbjct: 72 LDELYRICEYARSITLERPALLGRIIARP 100
>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp. pcc
6803 [TaxId: 1148]}
Length = 249
Score = 26.5 bits (58), Expect = 5.9
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 146 DQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEA 185
R+ I R+VL++ + I+R+V EA
Sbjct: 161 PTPGDRRQFKEIYRDVLNSL------PLDEATINRIVEEA 194
>d1ulva4 b.30.5.5 (A:2-273) Glucodextranase, domain N {Arthrobacter
globiformis [TaxId: 1665]}
Length = 272
Score = 26.3 bits (58), Expect = 6.5
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 354 DGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLP 388
DGWT + ADG+ G T ++P
Sbjct: 188 DGWTDLAADGRLDNASA----TAGPGNISQTGQIP 218
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 125
Score = 25.6 bits (55), Expect = 7.0
Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 7/101 (6%)
Query: 49 ASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLP--HFDWTGTLRPYP 106
+ + S + G + G K + + P
Sbjct: 21 PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPML 80
Query: 107 ISSK--LTVP---AYIELPDWALDGTPKVEPNSDLQHVVEI 142
K L +P AY + G+ + P S L +E
Sbjct: 81 TGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 121
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
40051]}
Length = 845
Score = 26.3 bits (58), Expect = 8.1
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 279 VRFREIGEVINRHATMSGFS 298
VRF I ++IN S FS
Sbjct: 469 VRFARINQIINED-LHSVFS 487
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.428
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,585,324
Number of extensions: 75819
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 38
Length of query: 399
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,213,086
Effective search space: 378482832
Effective search space used: 378482832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)