Your job contains 1 sequence.
>015839
MKRKREEEKSKANDSNSNGNGNGNGNGNGNGNSSNNMEIVWQTPANPPVKEDYIFRDGRR
NVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTV
KSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE
HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVV
DVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIR
VHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHHSPPPVSSDKSESSSEDFSIDPM
CTNCPNLAPKGKRLLSSNSLEDLCYGHMRQYQTSLVMLS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015839
(399 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0051719 - symbol:RluA-1 "RluA-1" species:7227 "Dro... 604 7.3e-59 1
FB|FBgn0032256 - symbol:RluA-2 "RluA-2" species:7227 "Dro... 579 3.3e-56 1
MGI|MGI:1918066 - symbol:Rpusd2 "RNA pseudouridylate synt... 578 4.2e-56 1
UNIPROTKB|F1PK69 - symbol:RPUSD2 "Uncharacterized protein... 576 6.8e-56 1
RGD|1306147 - symbol:Rpusd2 "RNA pseudouridylate synthase... 573 1.4e-55 1
UNIPROTKB|Q8IZ73 - symbol:RPUSD2 "RNA pseudouridylate syn... 569 3.7e-55 1
UNIPROTKB|F1P0G3 - symbol:RPUSD2 "Uncharacterized protein... 564 1.3e-54 1
DICTYBASE|DDB_G0281097 - symbol:DDB_G0281097 "pseudouridi... 438 1.4e-54 2
UNIPROTKB|F1N088 - symbol:RPUSD2 "Uncharacterized protein... 561 2.6e-54 1
POMBASE|SPAC18B11.02c - symbol:SPAC18B11.02c "tRNA pseudo... 558 5.5e-54 1
SGD|S000005427 - symbol:RIB2 "Bifunctional DRAP deaminase... 507 1.1e-50 2
SGD|S000002194 - symbol:PUS9 "Mitochondrial tRNA:pseudour... 513 3.2e-49 1
CGD|CAL0002400 - symbol:orf19.3177 species:5476 "Candida ... 491 6.9e-47 1
ASPGD|ASPL0000068180 - symbol:AN10936 species:162425 "Eme... 371 1.2e-45 2
SGD|S000003401 - symbol:PUS6 "tRNA:pseudouridine synthase... 335 2.6e-45 2
WB|WBGene00019498 - symbol:K07E8.7 species:6239 "Caenorha... 473 5.6e-45 1
UNIPROTKB|B4DDD1 - symbol:RPUSD2 "cDNA FLJ57803, highly s... 416 6.1e-39 1
UNIPROTKB|G4MYD1 - symbol:MGG_08117 "DRAP deaminase" spec... 398 4.9e-37 1
CGD|CAL0004292 - symbol:orf19.2788 species:5476 "Candida ... 355 1.8e-32 1
UNIPROTKB|Q59PV5 - symbol:CaO19.2788 "Putative uncharacte... 355 1.8e-32 1
GENEDB_PFALCIPARUM|PFI0685w - symbol:PFI0685w "pseudourid... 215 1.7e-31 3
UNIPROTKB|Q8I312 - symbol:PFI0685w "Pseudouridylate synth... 215 1.7e-31 3
TIGR_CMR|CBU_0487 - symbol:CBU_0487 "ribosomal large subu... 251 1.9e-21 1
TIGR_CMR|DET_1375 - symbol:DET_1375 "ribosomal large subu... 217 6.8e-17 1
UNIPROTKB|P0AA39 - symbol:rluC species:83333 "Escherichia... 221 9.0e-17 1
UNIPROTKB|Q4KFS5 - symbol:rluC "Pseudouridine synthase" s... 217 3.1e-16 1
TIGR_CMR|ECH_0774 - symbol:ECH_0774 "ribosomal large subu... 205 9.5e-15 1
TIGR_CMR|ECH_0486 - symbol:ECH_0486 "ribosomal large subu... 200 7.7e-14 1
UNIPROTKB|O07166 - symbol:Rv3300c "Pseudouridine synthase... 196 1.3e-13 1
TIGR_CMR|CHY_1119 - symbol:CHY_1119 "ribosomal large subu... 194 2.2e-13 1
TIGR_CMR|APH_0549 - symbol:APH_0549 "ribosomal large subu... 189 8.2e-13 1
TIGR_CMR|GSU_0671 - symbol:GSU_0671 "ribosomal large subu... 119 1.3e-12 2
TIGR_CMR|CHY_1505 - symbol:CHY_1505 "ribosomal large subu... 186 2.3e-12 1
UNIPROTKB|P0AA37 - symbol:rluA species:83333 "Escherichia... 170 2.7e-12 1
TIGR_CMR|CBU_0757 - symbol:CBU_0757 "ribosomal large subu... 182 1.0e-11 1
UNIPROTKB|Q9KQH0 - symbol:rluC "Ribosomal large subunit p... 180 1.5e-11 1
TIGR_CMR|VC_2028 - symbol:VC_2028 "ribosomal large subuni... 180 1.5e-11 1
UNIPROTKB|Q9KRH4 - symbol:VC1668 "Pseudouridine synthase"... 169 1.7e-11 1
TIGR_CMR|VC_1668 - symbol:VC_1668 "pseudouridine synthase... 169 1.7e-11 1
TIGR_CMR|CPS_2290 - symbol:CPS_2290 "ribosomal large subu... 181 1.8e-11 1
TIGR_CMR|CPS_4520 - symbol:CPS_4520 "ribosomal large subu... 164 4.9e-11 1
TIGR_CMR|GSU_0082 - symbol:GSU_0082 "ribosomal large subu... 174 8.3e-11 1
UNIPROTKB|Q9KP71 - symbol:rluA "Ribosomal large subunit p... 166 1.4e-10 1
TIGR_CMR|VC_2505 - symbol:VC_2505 "ribosomal large subuni... 166 1.4e-10 1
UNIPROTKB|Q4K5V9 - symbol:rluD "Pseudouridine synthase" s... 171 1.8e-10 1
TIGR_CMR|NSE_0556 - symbol:NSE_0556 "ribosomal large subu... 168 3.4e-10 1
TAIR|locus:2204355 - symbol:AT1G76050 species:3702 "Arabi... 137 3.7e-10 2
UNIPROTKB|Q9KN61 - symbol:VC_A0104 "Pseudouridine synthas... 157 5.8e-10 1
TIGR_CMR|VC_A0104 - symbol:VC_A0104 "ribosomal large subu... 157 5.8e-10 1
TIGR_CMR|APH_0362 - symbol:APH_0362 "ribosomal large subu... 166 7.2e-10 1
TIGR_CMR|GSU_3160 - symbol:GSU_3160 "RNA pseudouridine sy... 161 8.2e-10 1
TIGR_CMR|CJE_0022 - symbol:CJE_0022 "RNA pseudouridine sy... 163 1.3e-09 1
UNIPROTKB|E2R2N3 - symbol:RPUSD4 "Uncharacterized protein... 161 2.3e-09 1
UNIPROTKB|P0AA41 - symbol:truC species:83333 "Escherichia... 157 3.4e-09 1
UNIPROTKB|F6XEH2 - symbol:RPUSD4 "Uncharacterized protein... 161 4.2e-09 1
TIGR_CMR|GSU_3353 - symbol:GSU_3353 "RNA pseudouridine sy... 158 4.6e-09 1
UNIPROTKB|Q96CM3 - symbol:RPUSD4 "RNA pseudouridylate syn... 160 5.5e-09 1
UNIPROTKB|E1BYI6 - symbol:RPUSD4 "Uncharacterized protein... 159 6.1e-09 1
UNIPROTKB|Q9KU20 - symbol:rluD "Ribosomal large subunit p... 158 6.1e-09 1
TIGR_CMR|VC_0709 - symbol:VC_0709 "ribosomal large subuni... 158 6.1e-09 1
TIGR_CMR|CPS_4080 - symbol:CPS_4080 "pseudouridine syntha... 151 8.3e-09 1
TIGR_CMR|SPO_3392 - symbol:SPO_3392 "ribosomal large subu... 148 1.0e-08 1
UNIPROTKB|F1S6H1 - symbol:LOC100737111 "Uncharacterized p... 157 1.2e-08 1
TIGR_CMR|SPO_0516 - symbol:SPO_0516 "ribosomal large subu... 154 2.2e-08 1
ZFIN|ZDB-GENE-060929-444 - symbol:rpusd1 "RNA pseudouridy... 152 2.2e-08 1
TIGR_CMR|CPS_3915 - symbol:CPS_3915 "ribosomal large subu... 153 2.3e-08 1
TIGR_CMR|NSE_0146 - symbol:NSE_0146 "ribosomal large subu... 151 4.2e-08 1
UNIPROTKB|E9PML2 - symbol:RPUSD4 "RNA pseudouridylate syn... 112 4.9e-08 2
UNIPROTKB|Q17QT4 - symbol:RPUSD1 "RNA pseudouridylate syn... 149 5.9e-08 1
MGI|MGI:1919186 - symbol:Rpusd1 "RNA pseudouridylate synt... 148 7.5e-08 1
RGD|1304934 - symbol:Rpusd1 "RNA pseudouridylate synthase... 148 7.5e-08 1
UNIPROTKB|F1RG52 - symbol:RPUSD1 "Uncharacterized protein... 148 7.9e-08 1
ZFIN|ZDB-GENE-040801-238 - symbol:zgc:92006 "zgc:92006" s... 147 1.4e-07 1
UNIPROTKB|P33643 - symbol:rluD "23S rRNA pseudouridine sy... 146 1.5e-07 1
UNIPROTKB|E2R7K0 - symbol:RPUSD1 "Uncharacterized protein... 144 2.1e-07 1
TIGR_CMR|CPS_0536 - symbol:CPS_0536 "RNA pseudouridine sy... 148 2.6e-07 1
UNIPROTKB|Q9UJJ7 - symbol:RPUSD1 "RNA pseudouridylate syn... 142 3.8e-07 1
TIGR_CMR|CJE_1416 - symbol:CJE_1416 "ribosomal large subu... 138 1.2e-06 1
UNIPROTKB|E1C0L7 - symbol:RPUSD1 "Uncharacterized protein... 132 3.0e-06 1
TAIR|locus:2090689 - symbol:AT3G19440 species:3702 "Arabi... 136 4.3e-06 1
DICTYBASE|DDB_G0271796 - symbol:DDB_G0271796 "pseudouridi... 99 1.1e-05 2
TIGR_CMR|CJE_0808 - symbol:CJE_0808 "RNA pseudouridine sy... 123 3.2e-05 1
RGD|1311268 - symbol:Rpusd4 "RNA pseudouridylate synthase... 125 4.8e-05 1
TIGR_CMR|CPS_3649 - symbol:CPS_3649 "tRNA pseudouridine s... 85 0.00012 2
MGI|MGI:1919239 - symbol:Rpusd4 "RNA pseudouridylate synt... 120 0.00018 1
UNIPROTKB|Q9KTL4 - symbol:truC "tRNA pseudouridine syntha... 116 0.00019 1
TIGR_CMR|VC_0888 - symbol:VC_0888 "pseudouridine synthase... 116 0.00019 1
>FB|FBgn0051719 [details] [associations]
symbol:RluA-1 "RluA-1" species:7227 "Drosophila melanogaster"
[GO:0008835 "diaminohydroxyphosphoribosylaminopyrimidine deaminase
activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
process" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
TIGRFAMs:TIGR00005 EMBL:BT003451 ProteinModelPortal:Q86P70
SMR:Q86P70 STRING:Q86P70 PaxDb:Q86P70 PRIDE:Q86P70
FlyBase:FBgn0051719 InParanoid:Q86P70 OrthoDB:EOG473N6H
ArrayExpress:Q86P70 Bgee:Q86P70 Uniprot:Q86P70
Length = 739
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 124/282 (43%), Positives = 170/282 (60%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+D+F+ EF+ P + Y ++ G + V+ E
Sbjct: 288 YYMENGLRKVYPYYFTFTTFTKGRWVGEKILDIFSREFRAHPTEEYERCIQTGTLTVNFE 347
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP+ Y +K + +++ +HRHE PV + I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 348 KVPIDYRLKHNDLLANIVHRHEVPVTCQPIKIVHMDEDIVVVNKPASIPVHPCGRYRHNT 407
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E +L L +HRLDRL SGLL+ R+ KA QQI +V K YI RV GV
Sbjct: 408 VVFILAKEFNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEGV 467
Query: 233 FPEG----EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+G ++ ++V ++Y + +A KGK T F ++S NGT S+VL
Sbjct: 468 FPDGIVECKEPIEV-VSYKIGVCKVSA-----------KGKDCTTTFQKLSQNGTTSVVL 515
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSAD 330
C+P+TGR HQIRVHLQY GYPI ND LY E +G S D
Sbjct: 516 CKPLTGRMHQIRVHLQYLGYPILNDPLYNHEVFGPLKGRSGD 557
>FB|FBgn0032256 [details] [associations]
symbol:RluA-2 "RluA-2" species:7227 "Drosophila melanogaster"
[GO:0043723 "2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone
5'-phosphate deaminase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 SMART:SM00363 EMBL:AE014134
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0564 TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802
OrthoDB:EOG473N6H EMBL:AY058686 RefSeq:NP_609411.1 UniGene:Dm.4124
SMR:Q9VKU8 IntAct:Q9VKU8 MINT:MINT-935784 STRING:Q9VKU8
EnsemblMetazoa:FBtr0080032 GeneID:34440 KEGG:dme:Dmel_CG6187
UCSC:CG6187-RA CTD:34440 FlyBase:FBgn0032256 InParanoid:Q9VKU8
GenomeRNAi:34440 NextBio:788509 Uniprot:Q9VKU8
Length = 547
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 120/278 (43%), Positives = 166/278 (59%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F +G R V PY+F F + K RW + I+D+F EF+ P + Y +++ G++ V+ E
Sbjct: 127 YYFENGLRKVYPYFFTFTTFAKGRWVDEKILDVFVREFRAAPPEEYERSLEAGKLTVNSE 186
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP Y +K + +++ +HRHE PV + + I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 187 KVPKDYKIKHNDLLANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPASIPVHPCGRYRHNT 246
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL EH+L L +HRLDRL SGLL+ R A KA QI +V K Y+ RV G
Sbjct: 247 VVFILAKEHNLKNLRTIHRLDRLTSGLLLFGRTAEKARELELQIRTRQVQKEYVCRVEGR 306
Query: 233 FPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPI 292
FP+G +V+ N + + + +P KGK T F RI G+ SIVLC+P+
Sbjct: 307 FPDG--IVECNEKIDVVSYKIGV-----CKVSP-KGKDCKTTFKRIGEVGSDSIVLCKPL 358
Query: 293 TGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSAD 330
TGR HQIRVHLQ+ GYPI+ND LY E +G D
Sbjct: 359 TGRMHQIRVHLQFLGYPISNDPLYNHEVFGPLKGRGGD 396
>MGI|MGI:1918066 [details] [associations]
symbol:Rpusd2 "RNA pseudouridylate synthase domain
containing 2" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 MGI:MGI:1918066 GO:GO:0003723
EMBL:AL772264 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0564 TIGRFAMs:TIGR00005 HOGENOM:HOG000167783
GeneTree:ENSGT00420000029802 CTD:27079 HOVERGEN:HBG103625
OMA:HLNEEPV OrthoDB:EOG4DV5KW EMBL:AK044767 EMBL:BC117827
EMBL:BC117828 IPI:IPI00120035 RefSeq:NP_775626.1 UniGene:Mm.33617
ProteinModelPortal:Q149F1 SMR:Q149F1 STRING:Q149F1
PhosphoSite:Q149F1 PRIDE:Q149F1 Ensembl:ENSMUST00000028796
GeneID:271842 KEGG:mmu:271842 UCSC:uc008lsz.2 InParanoid:Q149F1
NextBio:393510 Bgee:Q149F1 CleanEx:MM_RPUSD2 Genevestigator:Q149F1
Uniprot:Q149F1
Length = 553
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 113/268 (42%), Positives = 169/268 (63%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G++++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 146 YYFEGGLRKVRPYYFDFQTYCKGRWVGRSLLHVFSTEFRSQPLSYYEAAVRAGRLHLNEE 205
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A + +L + DV+ + KP S+PVHPCG++R N
Sbjct: 206 PVQDLSIVLKDNDFLRNTVHRHEPPVTAEPIHLLAENNDVVVIDKPSSIPVHPCGRFRHN 265
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 266 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSEKIHEQVRDRQLEKEYVCRVAG 325
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+ E + + ++Y R P +GK T F R+S NG S+V
Sbjct: 326 EFPDKEVICKEPILVVSYKVGVCRVD----------P-RGKPCETVFQRLSYNGRSSVVQ 374
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 375 CRPLTGRTHQIRVHLQFLGHPILNDPIY 402
>UNIPROTKB|F1PK69 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
GeneTree:ENSGT00420000029802 OMA:HLNEEPV EMBL:AAEX03016068
Ensembl:ENSCAFT00000014582 Uniprot:F1PK69
Length = 552
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 116/268 (43%), Positives = 167/268 (62%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 140 YYFEGGLRKVRPYYFDFQTYCKGRWVGHSLLHVFSTEFRAQPLSYYEAAVRAGRLHLNEE 199
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A V +L + DV+ V KP S+PVHPCG++R N
Sbjct: 200 PVQDLSIMLKDNDFLRNRVHRHEPPVTAEPVRLLAENEDVVVVDKPSSIPVHPCGRFRHN 259
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 260 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 319
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R DT +GK T F R+S NG S+V
Sbjct: 320 EFPTEEVTCKEPILVVSYKVGVCRV---------DT--RGKPCETVFQRLSYNGHSSVVR 368
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 369 CRPLTGRTHQIRVHLQFLGHPILNDPIY 396
>RGD|1306147 [details] [associations]
symbol:Rpusd2 "RNA pseudouridylate synthase domain containing 2"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
RGD:1306147 GO:GO:0003723 EMBL:CH473949 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802
CTD:27079 OMA:HLNEEPV OrthoDB:EOG4DV5KW IPI:IPI00914730
RefSeq:NP_001129317.1 RefSeq:XP_003749602.1 UniGene:Rn.23750
Ensembl:ENSRNOT00000014129 GeneID:100911166 GeneID:311326
KEGG:rno:100911166 KEGG:rno:311326 UCSC:RGD:1306147 NextBio:663325
Uniprot:D4ACD4
Length = 553
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 111/268 (41%), Positives = 168/268 (62%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G++++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 146 YYFEGGLRKVRPYYFDFQTYCKGRWVGRSLLHVFSTEFRSQPLAYYEAAVRAGRLHLNEE 205
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A + +L + DV+ + KP S+PVHPCG++R N
Sbjct: 206 PVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENDDVVVIDKPSSIPVHPCGRFRHN 265
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 266 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSEKIHEQVRDRQLEKEYVCRVAG 325
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+ E + + ++Y R + GK T F R+S NG S+V
Sbjct: 326 EFPDKEVICKEPILVVSYKVGVCRVDPQ-----------GKPCETVFQRLSYNGRSSVVQ 374
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 375 CRPLTGRTHQIRVHLQFLGHPILNDPIY 402
>UNIPROTKB|Q8IZ73 [details] [associations]
symbol:RPUSD2 "RNA pseudouridylate synthase
domain-containing protein 2" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000167783 EMBL:AK055971 EMBL:BC007697
EMBL:BC016967 EMBL:U67934 IPI:IPI00150963 RefSeq:NP_689473.1
UniGene:Hs.173311 ProteinModelPortal:Q8IZ73 SMR:Q8IZ73
IntAct:Q8IZ73 STRING:Q8IZ73 PhosphoSite:Q8IZ73 DMDM:158563848
PaxDb:Q8IZ73 PeptideAtlas:Q8IZ73 PRIDE:Q8IZ73
Ensembl:ENST00000315616 GeneID:27079 KEGG:hsa:27079 UCSC:uc001zmd.1
CTD:27079 GeneCards:GC15P040861 HGNC:HGNC:24180 HPA:HPA042079
HPA:HPA042194 neXtProt:NX_Q8IZ73 PharmGKB:PA134866412
HOVERGEN:HBG103625 InParanoid:Q8IZ73 OMA:HLNEEPV OrthoDB:EOG4DV5KW
PhylomeDB:Q8IZ73 GenomeRNAi:27079 NextBio:49685 ArrayExpress:Q8IZ73
Bgee:Q8IZ73 CleanEx:HS_RPUSD2 Genevestigator:Q8IZ73 Uniprot:Q8IZ73
Length = 545
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 113/268 (42%), Positives = 167/268 (62%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+Q++E+
Sbjct: 133 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVRAGRLQLNEK 192
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 193 PVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 252
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 253 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 312
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R P +GK T F R+S NG S+V
Sbjct: 313 EFPTEEVTCKEPILVVSYKVGVCRVD----------P-RGKPCETVFQRLSYNGQSSVVR 361
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 362 CRPLTGRTHQIRVHLQFLGHPILNDPIY 389
>UNIPROTKB|F1P0G3 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
GeneTree:ENSGT00420000029802 OMA:HLNEEPV EMBL:AADN02040041
IPI:IPI00585299 Ensembl:ENSGALT00000040443 Uniprot:F1P0G3
Length = 456
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 114/271 (42%), Positives = 167/271 (61%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYY++F ++ K RW G++++ +F+ EF+ +P YY +A + GR++++EE
Sbjct: 44 YYFEGGLRKVRPYYYDFRTYCKGRWVGRSLLHVFSTEFRAQPLSYYRAAARAGRLRLNEE 103
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V + +K++ + + +HRHEPPV A + IL + +V+ V KP S+PVHPCG++R N
Sbjct: 104 PVQDLDVVLKNNDFLRNTVHRHEPPVTAQPIQILVENDEVVVVDKPSSLPVHPCGRFRHN 163
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH+L L +HRLDR+ SG+L+ A+ + +Q+ ++ K Y+ RV G
Sbjct: 164 TVIFILGKEHNLKELHTIHRLDRMTSGVLMFAKTVEVSKRIDEQVRERQLEKEYVCRVVG 223
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FPE E V + + ++Y R P KGK T F R+S NG S+V
Sbjct: 224 EFPEHEVVCEEPILVVSYKVGVCRVD----------P-KGKCCKTIFQRLSYNGKSSVVK 272
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCE 319
C P TGRTHQIRVHLQY GYPI ND +Y E
Sbjct: 273 CLPRTGRTHQIRVHLQYLGYPIVNDPIYNME 303
>DICTYBASE|DDB_G0281097 [details] [associations]
symbol:DDB_G0281097 "pseudouridine synthase family
protein" species:44689 "Dictyostelium discoideum" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
dictyBase:DDB_G0281097 EMBL:AAFI02000040 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 KO:K15454 RefSeq:XP_640817.1
ProteinModelPortal:Q54UF9 STRING:Q54UF9 EnsemblProtists:DDB0238343
GeneID:8622871 KEGG:ddi:DDB_G0281097 OMA:FAKERWF Uniprot:Q54UF9
Length = 578
Score = 438 (159.2 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 86/233 (36%), Positives = 139/233 (59%)
Query: 55 FRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV 114
++D R+++PY + F K RW G++I+D+F++EF D Y+ +K G I+V++++V
Sbjct: 153 YKDNLRHIEPYQYTFKVFAKERWFGQSILDMFSQEFSTNSRDVYLKKIKRGLIKVNDQLV 212
Query: 115 PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV 174
SY +K + I H +HRHEPPV + I+ + +V+ V KP S+PVHPCG++R N+++
Sbjct: 213 SPSYKIKLNDTIIHTVHRHEPPVTGESIKIVSLDENVVVVDKPSSIPVHPCGRFRHNSLM 272
Query: 175 GILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFP 234
IL +EH + L+ VHRLDRL SGLL+LAR A+ QI++G V K+Y+A+V G FP
Sbjct: 273 YILASEHGINQLYGVHRLDRLTSGLLLLARTPDSANKKANQIQSGLVSKQYLAKVIGKFP 332
Query: 235 EGEQVVDVNINYNASAGRST-AESGDSLGDTPLKGKAACTKFTRISTNGTHSI 286
+ + + ++N E G + D P+ ++ + G SI
Sbjct: 333 GSDTINSSSSSFNEQIKLCKHLEDGTFIIDQPIVIQSMRLGINHVGVGGKPSI 385
Score = 143 (55.4 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 31/57 (54%), Positives = 39/57 (68%)
Query: 279 STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAY 335
STN SIVLC P TGRTHQIRVHL++ G+PIAND LY E + +++D +Y
Sbjct: 396 STNT--SIVLCTPKTGRTHQIRVHLKWLGFPIANDPLYNNEFKESFKALTSDGKTSY 450
>UNIPROTKB|F1N088 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802 OMA:HLNEEPV
EMBL:DAAA02028551 IPI:IPI01002170 Ensembl:ENSBTAT00000004148
Uniprot:F1N088
Length = 552
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 112/268 (41%), Positives = 164/268 (61%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F EF+ +P YY +AV+ GR+ ++EE
Sbjct: 140 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFGTEFRAQPLAYYEAAVRAGRLHLNEE 199
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 200 PVQDLSIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 259
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 260 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVVG 319
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R + GK + F R+S NG S+V
Sbjct: 320 EFPTEEVTCKEPILVVSYKVGVCRVDPQ-----------GKPCESVFQRLSYNGHSSVVR 368
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 369 CRPLTGRTHQIRVHLQFLGHPILNDPIY 396
>POMBASE|SPAC18B11.02c [details] [associations]
symbol:SPAC18B11.02c "tRNA pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0009982
"pseudouridine synthase activity" evidence=ISO] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=ISO] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PomBase:SPAC18B11.02c GO:GO:0005829
GO:GO:0005739 GO:GO:0005634 EMBL:CU329670 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000167783 KO:K15454 OrthoDB:EOG4BK8C8
PIR:T37912 RefSeq:NP_592881.1 ProteinModelPortal:Q09709
STRING:Q09709 EnsemblFungi:SPAC18B11.02c.1 GeneID:2542607
KEGG:spo:SPAC18B11.02c OMA:YRKNTVV NextBio:20803656 Uniprot:Q09709
Length = 394
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 114/280 (40%), Positives = 169/280 (60%)
Query: 44 PANPPVKE-DYIFR-DGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSA 101
P P+K+ +Y+F+ DG R V PYY+E+I+ K RW GKT++++F EF+ R YY A
Sbjct: 5 PKRDPLKDCEYVFKGDGLRRVPPYYYEYITFAKLRWYGKTLLEVFNTEFRDRESGYYEKA 64
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
++ G+++V+ ++ V +++ +SH HRHEPPV V I+ ++ + + KP VP
Sbjct: 65 IRNGQVKVNNQIGNVDTLIENGYIVSHHAHRHEPPVSDQPVGIVHEDESYVVIDKPAGVP 124
Query: 162 VHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
VHP G+Y NTV+ IL E+ + L+P +RLDRL SGL+ +++ A+ R + + +
Sbjct: 125 VHPTGRYNHNTVLHILMKENKCSLLYPCNRLDRLTSGLMFFSKSPKAAEEMRVHMISKSL 184
Query: 222 IKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN 281
K Y+ARV G FP +V+ A T L GK A T F RI+ +
Sbjct: 185 KKEYVARVIGEFPNSGEVI-------CDAPLLTVAPTLGLNRIHPDGKEASTVFKRIAFD 237
Query: 282 GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
G S+VLC+P+TGRTHQ+RVHLQY GYPIAND +Y + V
Sbjct: 238 GHTSLVLCKPLTGRTHQLRVHLQYLGYPIANDPIYANKRV 277
>SGD|S000005427 [details] [associations]
symbol:RIB2 "Bifunctional DRAP deaminase and
tRNA:pseudouridine synthase" species:4932 "Saccharomyces
cerevisiae" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA;ISS;IMP;IDA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IDA;IMP] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009231 "riboflavin biosynthetic process"
evidence=IEA;IMP] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISM;IDA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR002125 InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR016193
InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 UniPathway:UPA00275 SGD:S000005427
GO:GO:0005737 EMBL:BK006948 GO:GO:0046872 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0009231 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 GeneTree:ENSGT00420000029802 OrthoDB:EOG4BK8C8
eggNOG:COG0117 KO:K14655 GO:GO:0008835 EMBL:Z21618 EMBL:Z74808
PIR:S50972 RefSeq:NP_014575.1 ProteinModelPortal:Q12362 SMR:Q12362
DIP:DIP-3840N MINT:MINT-495231 STRING:Q12362 PaxDb:Q12362
PeptideAtlas:Q12362 PRIDE:Q12362 EnsemblFungi:YOL066C GeneID:854088
KEGG:sce:YOL066C CYGD:YOL066c OMA:EQCALEK
BioCyc:MetaCyc:YOL066C-MONOMER NextBio:975737 Genevestigator:Q12362
GermOnline:YOL066C GO:GO:0043723 Uniprot:Q12362
Length = 591
Score = 507 (183.5 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 104/267 (38%), Positives = 161/267 (60%)
Query: 52 DY-IFRDGR-RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV 109
DY + DG R ++PY+F + + K RW + +VD+F EF+ R YY + G++ +
Sbjct: 69 DYEVTIDGPLRKIEPYFFTYKTFCKERWRDRKLVDVFVSEFRDREPSYYSKTIAEGKVYL 128
Query: 110 DEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYR 169
++E + ++ I+H +HRHEPPV + + I+ ++ D+L + KP S+PVHP G+YR
Sbjct: 129 NDEPANLDTIIRDGDLITHKVHRHEPPVTSKPIDIVFEDEDILVIDKPSSIPVHPTGRYR 188
Query: 170 KNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARV 229
NT+ +L+ + + + P +RLD+ SGL+ LA+ AD Q++A +V K Y+ARV
Sbjct: 189 FNTITKMLERQLGYS-VHPCNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARV 247
Query: 230 NGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLC 289
G FP G +V+V+ + + + + D K A T F R+S +G SIV C
Sbjct: 248 KGEFPIG--IVEVDKPVRSVNPKVALNAVCEMSDE--NAKHAKTVFQRVSYDGQTSIVKC 303
Query: 290 EPITGRTHQIRVHLQYTGYPIANDMLY 316
+P+TGRTHQIRVHLQY G+PIAND +Y
Sbjct: 304 KPLTGRTHQIRVHLQYLGFPIANDPIY 330
Score = 37 (18.1 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 363 NCPNLAPKGKRLLSS 377
NCP + P G L ++
Sbjct: 497 NCPTIVPMGTVLYTT 511
>SGD|S000002194 [details] [associations]
symbol:PUS9 "Mitochondrial tRNA:pseudouridine synthase"
species:4932 "Saccharomyces cerevisiae" [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;ISM;IMP] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IMP;IDA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
SGD:S000002194 GO:GO:0005739 GO:GO:0005634 EMBL:BK006938
GO:GO:0003723 EMBL:Z71781 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 EMBL:Z74084 EMBL:AY692682 PIR:S67569
RefSeq:NP_010248.1 ProteinModelPortal:Q12069 SMR:Q12069
DIP:DIP-5399N MINT:MINT-553402 STRING:Q12069 PaxDb:Q12069
EnsemblFungi:YDL036C GeneID:851525 KEGG:sce:YDL036C CYGD:YDL036c
GeneTree:ENSGT00420000029802 KO:K15454 OMA:GHPISND
OrthoDB:EOG4BK8C8 NextBio:968911 Genevestigator:Q12069
GermOnline:YDL036C Uniprot:Q12069
Length = 462
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 106/267 (39%), Positives = 162/267 (60%)
Query: 57 DGR-RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
DG R +KPY+F + + K RW K +VD+F EF+ R +YY ++ G + +++E
Sbjct: 102 DGPLRKIKPYHFTYRTFCKERWRDKKLVDVFISEFRDRESEYYKRTIENGDVHINDETAD 161
Query: 116 VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+S +++ I+H +HRHEPPV + + ++ ++ +++ + KP +PVHP G+YR NT+
Sbjct: 162 LSTVIRNGDLITHQVHRHEPPVTSRPIKVIFEDDNIMVIDKPSGIPVHPTGRYRFNTITK 221
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
+LQ + P +RLDRL SGL+ LA+ AD Q++A +V K Y+A+V G FPE
Sbjct: 222 MLQNNLGFV-VNPCNRLDRLTSGLMFLAKTPKGADNIGDQLKAREVTKEYVAKVVGEFPE 280
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKG-KAACTKFTRISTNGTHSIVLCEPITG 294
E +V+ + R + + + KG K A T F RIS +G SIV C+P+TG
Sbjct: 281 TEVIVEKPLKLIEP--RLALNAVCQMDE---KGAKHAKTVFNRISYDGKTSIVKCKPLTG 335
Query: 295 RTHQIRVHLQYTGYPIANDMLYLCEHV 321
R+HQIRVHLQY G+PIAND +Y + V
Sbjct: 336 RSHQIRVHLQYLGHPIANDPIYSNDEV 362
>CGD|CAL0002400 [details] [associations]
symbol:orf19.3177 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA] InterPro:IPR002125 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR016193 InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 CGD:CAL0002400
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0016787
EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 eggNOG:COG0117 KO:K14655
RefSeq:XP_714595.1 RefSeq:XP_714726.1 ProteinModelPortal:Q59YK3
STRING:Q59YK3 GeneID:3643617 GeneID:3643740 KEGG:cal:CaO19.10687
KEGG:cal:CaO19.3177 Uniprot:Q59YK3
Length = 589
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 107/273 (39%), Positives = 162/273 (59%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
+Y+ R V PY++ ++++ K RW + ++D+F +EF+ R D Y AV+ G ++V+
Sbjct: 81 NYVIEGRLRRVTPYFYTYLTYCKLRWQDRKLIDVFIDEFRDRTPDAYRMAVEEGLVKVNS 140
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
++ + +++ ISH +R EPPV + D+ I+ ++ D+L + KP +PVHP G+YR N
Sbjct: 141 QVANLETILRNGDLISHRSYRREPPVSSRDIKIVFEDDDLLVIDKPGGIPVHPTGRYRYN 200
Query: 172 TVVGILQAEHDLAPLF-PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
TV I EH+ + P +RLDRL SGL+ L +++ A+ QI V K YIARV
Sbjct: 201 TVTKIF--EHEKGKIVHPCNRLDRLTSGLMFLGKSSKGANNMMSQIRDRNVTKEYIARVK 258
Query: 231 GVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNG-TH-SIVL 288
G FP +VD ++ + + T D GK A T+F R+S + T+ S+V
Sbjct: 259 GEFPLDRIIVDKPLS--TKSPKLTLNVVDMEN-----GKEAKTEFQRVSYDPITNTSVVK 311
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
C P+TGRTHQIRVHLQ+ GYPIAND +Y E V
Sbjct: 312 CHPLTGRTHQIRVHLQFLGYPIANDPIYSSEFV 344
>ASPGD|ASPL0000068180 [details] [associations]
symbol:AN10936 species:162425 "Emericella nidulans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:BN001304 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 OMA:GHPISND
EnsemblFungi:CADANIAT00000078 Uniprot:C8VCJ6
Length = 572
Score = 371 (135.7 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 85/240 (35%), Positives = 133/240 (55%)
Query: 43 TPANP-PVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSA 101
TP PV+ Y F G R V PY++ + ++ K RW + ++D+F EF+ R YY A
Sbjct: 27 TPCEGLPVR--YYFEGGLRRVYPYHYTYNTYCKERWRNRELIDIFTSEFRDREPGYYKKA 84
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
++ G + V+ + +K+ + ISH LHRHEPPV ++ I+ + D+L + KP VP
Sbjct: 85 LESGNVCVNGKPAGPHTVLKNGEVISHTLHRHEPPVTGNEIGIIHETDDLLVIDKPAGVP 144
Query: 162 VHPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
VH G+Y N+V+ IL+ ++ A + P +RLDRL SG++ + + A AD +++
Sbjct: 145 VHSTGRYHYNSVMEILRIQNGGAYVPRPCNRLDRLTSGVMFVGKTAQGADRMTVKLKERT 204
Query: 221 VIKRYIARVNGVFPEGEQVVDVNI-NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRIS 279
V K Y+ARV G FP+G VVD I + + G + + GK A TKF R++
Sbjct: 205 VQKEYVARVKGRFPDGVVVVDQPIMSVSPKVGLNRVRA---------TGKEAKTKFRRLA 255
Score = 131 (51.2 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 23/33 (69%), Positives = 29/33 (87%)
Query: 284 HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+SIV C P+TGRTHQIRVHLQ+ G+PI+ND +Y
Sbjct: 289 YSIVHCFPLTGRTHQIRVHLQFLGHPISNDPIY 321
Score = 40 (19.1 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 141 DVSILQKEPDVLTVCKPPSVPVHPC 165
D ++ PD V +PP V + PC
Sbjct: 7 DTTLKVPPPD--PVQEPPKVAITPC 29
>SGD|S000003401 [details] [associations]
symbol:PUS6 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IMP;IDA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
SGD:S000003401 GO:GO:0005739 EMBL:BK006941 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 RefSeq:NP_011690.3 GeneID:853085
KEGG:sce:YGR174C RefSeq:NP_011685.3 GeneID:853079 KEGG:sce:YGR169C
KO:K15453 GO:GO:0031119 eggNOG:COG0564 EMBL:Z72954 PIR:S64480
ProteinModelPortal:P53294 SMR:P53294 DIP:DIP-5429N MINT:MINT-544439
STRING:P53294 PaxDb:P53294 PeptideAtlas:P53294 EnsemblFungi:YGR169C
CYGD:YGR169c GeneTree:ENSGT00510000048339 HOGENOM:HOG000167783
OMA:KWYLARV OrthoDB:EOG40CMS0 BioCyc:MetaCyc:MONOMER-16704
NextBio:973044 Genevestigator:P53294 GermOnline:YGR169C
Uniprot:P53294
Length = 404
Score = 335 (123.0 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 86/234 (36%), Positives = 128/234 (54%)
Query: 120 VKSSQKISHFLHRHEPPVMAW--------DV-------SILQKEPDVLTVCKPPSVPVHP 164
+K+ + H+HEPPV W D+ +I+ ++ +L + KP +PVHP
Sbjct: 82 IKNHDVLETTTHKHEPPVKQWCSQEVEAEDLPGRIAGFNIVFEDESILVIDKPSGIPVHP 141
Query: 165 CGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKR 224
GQ+ +NT+ +L+ H + L P +RLD++ SGLLILA+N+ A ++ I + +IK
Sbjct: 142 TGQFYQNTITELLKL-HGVDAL-PCYRLDKITSGLLILAKNSQSAGEIQKSIRSRDMIKI 199
Query: 225 YIARVNGVFPEGEQVVDVNINYNAS------AGRSTAE-----SGDSLGDTPL---KGKA 270
Y+ARV G FP E ++D N NA+ + T E S D P+ K
Sbjct: 200 YLARVKGRFPHSELILD---NENAAETTFEDTSKVTVEMTPIYSIDPKRQFPVGLSTSKD 256
Query: 271 ACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVT 322
A TKF R ++ ++V C+PITGRTHQIR+HL G+PI ND +Y C H+T
Sbjct: 257 AITKFYPIRYFSHADETVVACKPITGRTHQIRIHLARLGHPIVNDSVY-CSHIT 309
Score = 158 (60.7 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 31/91 (34%), Positives = 50/91 (54%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
++G R V+PYY + VK RW GK ++D+ EFK RP YY+ ++ G ++ + VP
Sbjct: 12 QNGLRKVRPYYNRRSAFVKGRWLGKLLIDVLVSEFKLRPRAYYLDQIRKGTYRLIRDGVP 71
Query: 116 V------SYTVKSSQKISHFLHRHEPPVMAW 140
+ + +K+ + H+HEPPV W
Sbjct: 72 LVPDHLMTTIIKNHDVLETTTHKHEPPVKQW 102
>WB|WBGene00019498 [details] [associations]
symbol:K07E8.7 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802 OMA:HLNEEPV
EMBL:FO081602 PIR:T32044 RefSeq:NP_493778.1
ProteinModelPortal:O16686 SMR:O16686 STRING:O16686 PaxDb:O16686
EnsemblMetazoa:K07E8.7 GeneID:173456 KEGG:cel:CELE_K07E8.7
UCSC:K07E8.7 CTD:173456 WormBase:K07E8.7 HOGENOM:HOG000155606
InParanoid:O16686 NextBio:879741 Uniprot:O16686
Length = 432
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 107/285 (37%), Positives = 163/285 (57%)
Query: 48 PVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRI 107
P+K + DG R++ PY+ + + K RW G+ +V++F+ EF +Y A K GRI
Sbjct: 53 PMKVPFKIVDGVRHLAPYWACYRTRTKGRWIGRKMVEVFSGEFLSTNRNYAKIACKMGRI 112
Query: 108 QVD-EEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCG 166
V+ E+M V Y +++ ++ H+ HRHE P+ + ++ + D+ V KPPS+PVH CG
Sbjct: 113 YVNGEQMTDVDYVMRNGDRVEHWAHRHEHPIRDLPIRVISETDDLFVVEKPPSLPVHTCG 172
Query: 167 QYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADL-FRQQIEAGKVIKRY 225
QY +TV+G L+ L +HRLDR SG+L+ A+N + DL F+ ++ G+ K Y
Sbjct: 173 QYAIHTVLGQLRVNEGRTGLRVLHRLDRATSGVLLFAKNY-ETDLEFKTTLKQGEWSKEY 231
Query: 226 IARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHS 285
I +V+GVFP+ EQV + I G G P GK A ++F ++ ++GT S
Sbjct: 232 ICKVDGVFPDEEQVCEQPI------GPLVISMGIQCV-RP-DGKDAKSRFRKLWSDGTQS 283
Query: 286 IVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSAD 330
+V TGRTHQIRVH Q+ G+PIA D +Y +G +AD
Sbjct: 284 VVQVHIETGRTHQIRVHSQFLGHPIAGDQIYNSAVWGPTKGKNAD 328
>UNIPROTKB|B4DDD1 [details] [associations]
symbol:RPUSD2 "cDNA FLJ57803, highly similar to Homo
sapiens RNA pseudouridylate synthase domain containing 2 (RPUSD2),
mRNA" species:9606 "Homo sapiens" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 UniGene:Hs.173311 HGNC:HGNC:24180
HOVERGEN:HBG103625 EMBL:AC091045 EMBL:AK293145 IPI:IPI00908891
SMR:B4DDD1 STRING:B4DDD1 Ensembl:ENST00000559271 UCSC:uc021sjh.1
Uniprot:B4DDD1
Length = 484
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 92/215 (42%), Positives = 125/215 (58%)
Query: 110 DEEMVPVSYTVKSS-QKISHFL----HRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHP 164
DE SY + +K + FL HRHEPPV A + +L + DV+ V KP S+PVHP
Sbjct: 125 DEHFAETSYYFEGGLRKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHP 184
Query: 165 CGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKR 224
CG++R NTV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K
Sbjct: 185 CGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKE 244
Query: 225 YIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN 281
Y+ RV G FP E + ++Y R P +GK T F R+S N
Sbjct: 245 YVCRVEGEFPTEEVTCKEPILVVSYKVGVCRVD----------P-RGKPCETVFQRLSYN 293
Query: 282 GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
G S+V C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 294 GQSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIY 328
>UNIPROTKB|G4MYD1 [details] [associations]
symbol:MGG_08117 "DRAP deaminase" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CM001232 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 KO:K15454 RefSeq:XP_003715073.1
ProteinModelPortal:G4MYD1 EnsemblFungi:MGG_08117T0 GeneID:2678399
KEGG:mgr:MGG_08117 Uniprot:G4MYD1
Length = 487
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 77/203 (37%), Positives = 124/203 (61%)
Query: 38 EIVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDY 97
E++W P PP Y+ DG R V+PY+F + + VK RW G+ +VD+F EF+ RP +Y
Sbjct: 56 EVIW--P--PP----YVIEDGLRRVEPYHFAYRTWVKERWRGRALVDVFESEFRDRPIEY 107
Query: 98 YVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKP 157
Y ++ G + V+ + V ++ +K+ + I+H HRHEPP A V +L ++ +++ + KP
Sbjct: 108 YRECMEKGSVLVNAKKVGPNHILKNGELIAHICHRHEPPCTADPVQVLHEDDEMIVINKP 167
Query: 158 PSVPVHPCGQYRKNTVVGILQAEHDLA-PLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
+PVHP G+Y N+VV ++++E +P +RLDRL SG++ +A+ A +QI
Sbjct: 168 SGMPVHPAGRYNFNSVVEVMRSERSRDFKAYPCNRLDRLTSGIMFIAKTPQAACKMGEQI 227
Query: 217 EAGKVIKRYIARVNGVFPEGEQV 239
V K Y+ARV G FP+GE +
Sbjct: 228 MGRTVRKEYLARVIGRFPDGEVI 250
Score = 202 (76.2 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 55/148 (37%), Positives = 79/148 (53%)
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD----- 241
+P +RLDRL SG++ +A+ A +QI V K Y+ARV G FP+GE + +
Sbjct: 198 YPCNRLDRLTSGIMFIAKTPQAACKMGEQIMGRTVRKEYLARVIGRFPDGEVICNEPILQ 257
Query: 242 ----VNINYNASAGRSTAE---------SGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
+ +N + GR + G+ G+AA + R + G +SIV
Sbjct: 258 ISPKLGLNRVRANGRHARTVFKRLAYYPPAEGQGNEAKPGEAANGRPWR-NKQG-YSIVR 315
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 316 CLPVTGRTHQIRVHLQHLGHPIENDPIY 343
>CGD|CAL0004292 [details] [associations]
symbol:orf19.2788 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
CGD:CAL0004292 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 EMBL:AACQ01000185 RefSeq:XP_711730.1
ProteinModelPortal:Q59PV5 STRING:Q59PV5 GeneID:3646675
KEGG:cal:CaO19.2788 Uniprot:Q59PV5
Length = 402
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 94/289 (32%), Positives = 146/289 (50%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQ-VDE 111
YI + R V PYY +F + VK RW G+TI+D++ +F G + ++ ++ V
Sbjct: 4 YIVENNIRKVIPYYTDFQTFVKKRWEGRTIIDVYESDF-GECQQNILDDIESEKLYIVTN 62
Query: 112 EMVPVSYTV----------KSSQK--ISHFLHRHEPPVMAWDVSILQ---KEPDVLTVCK 156
P ++ K +K I H HRHEPP+ W I++ ++ ++L V K
Sbjct: 63 SNKPTEQSILTGVETLIKRKLDEKDIICHTKHRHEPPI-PWHNDIIKSVYEDDEILVVDK 121
Query: 157 PPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
P +P HP G Y N++ I++ + ++ ++ HRLD++ SG+L+LA+ + F + +
Sbjct: 122 PSGIPTHPTGNYYYNSLSEIIKQQLNMDSIWTCHRLDKVTSGVLVLAKTKNGGVRFSKLM 181
Query: 217 EAGK--VIKRYIARVNGVFPEGEQ-----VVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
K K Y+ARV+G FPEG + VN+N +G DS
Sbjct: 182 RDSKQHTEKTYLARVSGKFPEGIHRYRCPIFAVNMNGYLMSGNMEELPTDST-------- 233
Query: 270 AACTKFTRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F RI N + S+V C PITG+ HQIR+HL+ G+PI ND Y
Sbjct: 234 ---TIFERIKYNASLDQSLVKCVPITGKFHQIRIHLRNLGFPIVNDSFY 279
>UNIPROTKB|Q59PV5 [details] [associations]
symbol:CaO19.2788 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
CGD:CAL0004292 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 EMBL:AACQ01000185 RefSeq:XP_711730.1
ProteinModelPortal:Q59PV5 STRING:Q59PV5 GeneID:3646675
KEGG:cal:CaO19.2788 Uniprot:Q59PV5
Length = 402
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 94/289 (32%), Positives = 146/289 (50%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQ-VDE 111
YI + R V PYY +F + VK RW G+TI+D++ +F G + ++ ++ V
Sbjct: 4 YIVENNIRKVIPYYTDFQTFVKKRWEGRTIIDVYESDF-GECQQNILDDIESEKLYIVTN 62
Query: 112 EMVPVSYTV----------KSSQK--ISHFLHRHEPPVMAWDVSILQ---KEPDVLTVCK 156
P ++ K +K I H HRHEPP+ W I++ ++ ++L V K
Sbjct: 63 SNKPTEQSILTGVETLIKRKLDEKDIICHTKHRHEPPI-PWHNDIIKSVYEDDEILVVDK 121
Query: 157 PPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
P +P HP G Y N++ I++ + ++ ++ HRLD++ SG+L+LA+ + F + +
Sbjct: 122 PSGIPTHPTGNYYYNSLSEIIKQQLNMDSIWTCHRLDKVTSGVLVLAKTKNGGVRFSKLM 181
Query: 217 EAGK--VIKRYIARVNGVFPEGEQ-----VVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
K K Y+ARV+G FPEG + VN+N +G DS
Sbjct: 182 RDSKQHTEKTYLARVSGKFPEGIHRYRCPIFAVNMNGYLMSGNMEELPTDST-------- 233
Query: 270 AACTKFTRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F RI N + S+V C PITG+ HQIR+HL+ G+PI ND Y
Sbjct: 234 ---TIFERIKYNASLDQSLVKCVPITGKFHQIRIHLRNLGFPIVNDSFY 279
>GENEDB_PFALCIPARUM|PFI0685w [details] [associations]
symbol:PFI0685w "pseudouridylate synthase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0020011 EMBL:AL844508 KO:K01718
RefSeq:XP_001352012.1 ProteinModelPortal:Q8I312
EnsemblProtists:PFI0685w:mRNA GeneID:813417 KEGG:pfa:PFI0685w
EuPathDB:PlasmoDB:PF3D7_0914000 HOGENOM:HOG000282881
ProtClustDB:CLSZ2431954 Uniprot:Q8I312
Length = 955
Score = 215 (80.7 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 42/126 (33%), Positives = 71/126 (56%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y ++ R V PY + + K RW GK I D+ EF +Y++ ++K G ++V+++
Sbjct: 43 YFVKNKLRFVSPYVYTYKLFSKKRWVGKKIADVMTSEFCAYDMNYFIESIKKGYVKVNKQ 102
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
MV Y ++S+ I H L E PV+ + IL ++ + + V K S+P HP G Y+ N+
Sbjct: 103 MVSTDYIIQSNDFIEHKLLLFEKPVLCNKIIILYEDQNFICVYKHSSLPTHPVGSYQYNS 162
Query: 173 VVGILQ 178
++ ILQ
Sbjct: 163 LLRILQ 168
Score = 144 (55.7 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 32/65 (49%), Positives = 41/65 (63%)
Query: 254 TAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIA 311
T E+G D LK + TKF +S N + S++LC+PITGRTHQIR HL+ YPI+
Sbjct: 725 TKENGLQFNDYLLK--PSITKFMFLSYNSSIDESLILCQPITGRTHQIRAHLKSLSYPIS 782
Query: 312 NDMLY 316
ND Y
Sbjct: 783 NDAHY 787
Score = 100 (40.3 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 182 DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVF 233
D + ++ +HRLD+L SG++ +N + F Q + K+ K YI RV G F
Sbjct: 508 DKSYIYTLHRLDKLTSGIVFFGKNKKFSTYFSQNLSDNKIKKTYITRVQGDF 559
>UNIPROTKB|Q8I312 [details] [associations]
symbol:PFI0685w "Pseudouridylate synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0020011 EMBL:AL844508 KO:K01718
RefSeq:XP_001352012.1 ProteinModelPortal:Q8I312
EnsemblProtists:PFI0685w:mRNA GeneID:813417 KEGG:pfa:PFI0685w
EuPathDB:PlasmoDB:PF3D7_0914000 HOGENOM:HOG000282881
ProtClustDB:CLSZ2431954 Uniprot:Q8I312
Length = 955
Score = 215 (80.7 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 42/126 (33%), Positives = 71/126 (56%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y ++ R V PY + + K RW GK I D+ EF +Y++ ++K G ++V+++
Sbjct: 43 YFVKNKLRFVSPYVYTYKLFSKKRWVGKKIADVMTSEFCAYDMNYFIESIKKGYVKVNKQ 102
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
MV Y ++S+ I H L E PV+ + IL ++ + + V K S+P HP G Y+ N+
Sbjct: 103 MVSTDYIIQSNDFIEHKLLLFEKPVLCNKIIILYEDQNFICVYKHSSLPTHPVGSYQYNS 162
Query: 173 VVGILQ 178
++ ILQ
Sbjct: 163 LLRILQ 168
Score = 144 (55.7 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 32/65 (49%), Positives = 41/65 (63%)
Query: 254 TAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIA 311
T E+G D LK + TKF +S N + S++LC+PITGRTHQIR HL+ YPI+
Sbjct: 725 TKENGLQFNDYLLK--PSITKFMFLSYNSSIDESLILCQPITGRTHQIRAHLKSLSYPIS 782
Query: 312 NDMLY 316
ND Y
Sbjct: 783 NDAHY 787
Score = 100 (40.3 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 182 DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVF 233
D + ++ +HRLD+L SG++ +N + F Q + K+ K YI RV G F
Sbjct: 508 DKSYIYTLHRLDKLTSGIVFFGKNKKFSTYFSQNLSDNKIKKTYITRVQGDF 559
>TIGR_CMR|CBU_0487 [details] [associations]
symbol:CBU_0487 "ribosomal large subunit pseudouridine
synthase C" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_338279.1
ProteinModelPortal:Q4AAY1 GeneID:1208371 KEGG:cbu:CBU_0487
PATRIC:17929665 OMA:ERWPDYA ProtClustDB:CLSK940424
BioCyc:CBUR227377:GJ7S-484-MONOMER Uniprot:Q4AAY1
Length = 308
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 77/259 (29%), Positives = 123/259 (47%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ + + KG P A++ G ++V++ V Y + +
Sbjct: 13 AGQRLDNFLITRLKGVPSTRIYRAIRKGEVRVNKRRVGADYRLVVGDLVRIPPVQMAAPK 72
Query: 134 EPP------VMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
+P +++ ++ IL +E D+L + KP +PVH G + V+ L+ L
Sbjct: 73 KPATVDEKLLISLEMRILYEEADLLVIDKPAGLPVHG-GSGIQGGVIEALRIMRPKVRLL 131
Query: 188 P-VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG L++A+ S + KVIK+Y+ V G + GE V+V +
Sbjct: 132 ELVHRLDRETSGCLMVAKKRSTLVALHTLLTQRKVIKQYLLLVKGQWQGGECRVEVPLKK 191
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK+A T F + S++ +P+TGRTHQIRVH +
Sbjct: 192 NR------LQSGERMVKVEKEGKSAVTVFRPLKIFEQASLIEAKPLTGRTHQIRVHAAHL 245
Query: 307 GYPIANDMLYLCEHVTHRE 325
GYPIA D Y + V +RE
Sbjct: 246 GYPIAGDEKY-GDKVFNRE 263
>TIGR_CMR|DET_1375 [details] [associations]
symbol:DET_1375 "ribosomal large subunit pseudouridine
synthase, RluA family" species:243164 "Dehalococcoides ethenogenes
195" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_182086.1
ProteinModelPortal:Q3Z6R3 STRING:Q3Z6R3 GeneID:3229324
KEGG:det:DET1375 PATRIC:21609777 OMA:DTITIEI ProtClustDB:CLSK836936
BioCyc:DETH243164:GJNF-1376-MONOMER Uniprot:Q3Z6R3
Length = 300
Score = 217 (81.4 bits), Expect = 6.8e-17, P = 6.8e-17
Identities = 68/225 (30%), Positives = 111/225 (49%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM-AWDV--SILQKEPDVLTVCKPP 158
V+ G IQV+ + S +K+ I+ + PP + A D+ I+ ++ D+L + KPP
Sbjct: 35 VEAGHIQVNGKNAKPSLKLKNGDTITIEIPPETPPELKAEDIPLEIIFQDKDLLLINKPP 94
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLA----PLFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + +T++ G+L E ++ PL P VHRLD+ SGLL++A+N
Sbjct: 95 GLTVHPAPGHPDHTLINGVLALEPEMEDFDDPLRPGIVHRLDKDTSGLLLVAKNREALAN 154
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q + V K Y+ V G E ++ A GR ++ + G+ A
Sbjct: 155 LSAQFKERTVRKYYLTLVQGELHPAEGFIE------APLGRDP-QNRQKIAVVS-NGRPA 206
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T + + +S++ + TGRTHQIRVH G+P+A D +Y
Sbjct: 207 RTGYKVLRYIQGYSLLEVKLETGRTHQIRVHFAAIGHPVAGDAVY 251
>UNIPROTKB|P0AA39 [details] [associations]
symbol:rluC species:83333 "Escherichia coli K-12"
[GO:0000455 "enzyme-directed rRNA pseudouridine synthesis"
evidence=IMP;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 EMBL:M62747
EMBL:M96791 PIR:C64852 RefSeq:NP_415604.1 RefSeq:YP_489354.1
PDB:1V9K PDB:1XPI PDBsum:1V9K PDBsum:1XPI ProteinModelPortal:P0AA39
SMR:P0AA39 DIP:DIP-47832N IntAct:P0AA39 PRIDE:P0AA39
EnsemblBacteria:EBESCT00000000214 EnsemblBacteria:EBESCT00000014626
GeneID:12932031 GeneID:945637 KEGG:ecj:Y75_p1056 KEGG:eco:b1086
PATRIC:32117413 EchoBASE:EB1108 EcoGene:EG11118
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF ProtClustDB:PRK11025
BioCyc:EcoCyc:EG11118-MONOMER BioCyc:ECOL316407:JW1072-MONOMER
BioCyc:MetaCyc:EG11118-MONOMER EvolutionaryTrace:P0AA39
Genevestigator:P0AA39 Uniprot:P0AA39
Length = 319
Score = 221 (82.9 bits), Expect = 9.0e-17, P = 9.0e-17
Identities = 69/251 (27%), Positives = 113/251 (45%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + + KG P ++ G ++V+++ + Y +++ ++ R
Sbjct: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAERE 77
Query: 134 EPPVMAW--------DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP 185
E V DV IL ++ +L + KP VH + G+ +
Sbjct: 78 EEAVSPHLQKVAALADV-ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF 136
Query: 186 LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNIN 245
L VHRLDR SG+L++A+ S +Q+ + K Y+A V G + + V +
Sbjct: 137 LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLL 196
Query: 246 YNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQY 305
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 197 KNI------LQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQY 250
Query: 306 TGYPIANDMLY 316
G+PIA D Y
Sbjct: 251 AGHPIAFDDRY 261
>UNIPROTKB|Q4KFS5 [details] [associations]
symbol:rluC "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
GO:GO:0006364 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF RefSeq:YP_258908.1
ProteinModelPortal:Q4KFS5 SMR:Q4KFS5 STRING:Q4KFS5 GeneID:3477558
KEGG:pfl:PFL_1788 PATRIC:19872807 ProtClustDB:CLSK867667
BioCyc:PFLU220664:GIX8-1796-MONOMER Uniprot:Q4KFS5
Length = 318
Score = 217 (81.4 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 70/255 (27%), Positives = 113/255 (44%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----H 128
V +AG+ I + KG P ++ G ++V++ + Y +++ +
Sbjct: 16 VSPEYAGQRIDNFLLARLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDVVRVPPVR 75
Query: 129 FLHRHEPPVMAW------DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHD 182
R EP +A + SI+ ++ ++ + KP + VH + Q D
Sbjct: 76 VPERDEPVPLAQGLLQRLEASIVFEDKALIVINKPAGIAVHGGSGLNFGVIEAFRQLRPD 135
Query: 183 LAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDV 242
L VHRLDR SGLL++A+ S + V KRY+A V G + + V
Sbjct: 136 AKELELVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWATAVKQV-- 193
Query: 243 NINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHS-IVLCEPITGRTHQIRV 301
A +S SG+ + + +GK A T F + G + +V +P+TGRTHQIRV
Sbjct: 194 ----RAPLLKSNLRSGERMVEVNEEGKEALTVFKVLRRFGDFATMVEAKPVTGRTHQIRV 249
Query: 302 HLQYTGYPIANDMLY 316
H + G+ IA D Y
Sbjct: 250 HTLHAGHCIAGDSKY 264
>TIGR_CMR|ECH_0774 [details] [associations]
symbol:ECH_0774 "ribosomal large subunit pseudouridine
synthase C" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_507572.1
ProteinModelPortal:Q2GG61 STRING:Q2GG61 GeneID:3927994
KEGG:ech:ECH_0774 PATRIC:20576978 OMA:HAYFLSI
ProtClustDB:CLSK749111 BioCyc:ECHA205920:GJNR-777-MONOMER
Uniprot:Q2GG61
Length = 307
Score = 205 (77.2 bits), Expect = 9.5e-15, P = 9.5e-15
Identities = 63/184 (34%), Positives = 97/184 (52%)
Query: 143 SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLIL 202
S++ ++ DVL + KP + V G K ++ I+ D + VHRLD+ SG+L+L
Sbjct: 92 SVVYEDDDVLIINKPAGISVQG-GTKVKISISDIVDKIRDGESMKIVHRLDKDTSGILML 150
Query: 203 ARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVN-INYNASAGRSTAESGDSL 261
ARNA + L + + +V K+Y+A G+ P+ D+ IN++ + + S D +
Sbjct: 151 ARNARISRLIMHEFKNRRVEKKYLALTQGI-PKN----DIGQINHSIIKNKRSL-SLDKV 204
Query: 262 GDTPLKGKAACTKFTRISTNGTHSIVLCE--PITGRTHQIRVHLQYTGYPIANDMLY--L 317
D+ L+ A T F+ + + I L E PITGR HQIR+HL + G I D Y
Sbjct: 205 NDSYLQ--EAVTSFS-VLKKLPYGIGLLELKPITGRKHQIRIHLSHIGCSIIGDKKYGKF 261
Query: 318 CEHV 321
CEHV
Sbjct: 262 CEHV 265
>TIGR_CMR|ECH_0486 [details] [associations]
symbol:ECH_0486 "ribosomal large subunit pseudouridine
synthase, RluA family" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:HEYVRER RefSeq:YP_507302.1 ProteinModelPortal:Q2GGY1
STRING:Q2GGY1 GeneID:3927534 KEGG:ech:ECH_0486 PATRIC:20576444
ProtClustDB:CLSK749443 BioCyc:ECHA205920:GJNR-488-MONOMER
Uniprot:Q2GGY1
Length = 337
Score = 200 (75.5 bits), Expect = 7.7e-14, P = 7.7e-14
Identities = 60/185 (32%), Positives = 96/185 (51%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH--DLAPLF----P--VHRLD 193
+S++ ++ D++ + K P + VHP NT+V L A + L+ + P +HRLD
Sbjct: 96 ISVVYEDHDIIIINKAPGITVHPGAGTNNNTLVNALVAHYGNSLSHVGKATRPGIIHRLD 155
Query: 194 RLVSGLLILARNASKADLFRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGR 252
+ SGL+++A+N K+ F + K IK+ Y+A V G+ P + N N +
Sbjct: 156 KDTSGLMVIAKN-EKSYYFLSDLLLKKQIKKEYLAVVWGL-PNPKS----NTIKNYICVK 209
Query: 253 STAESGDSLGDTPLKGKAACTKF-TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIA 311
+ ++ P KGK A T++ T+ S + S++ C TGRTHQIRVH+ Y G I
Sbjct: 210 PNNKQMMTVTHLPHKGKLAITEYQTQKSFSNIASLIKCRIHTGRTHQIRVHMSYIGNSII 269
Query: 312 NDMLY 316
D Y
Sbjct: 270 GDQKY 274
>UNIPROTKB|O07166 [details] [associations]
symbol:Rv3300c "Pseudouridine synthase" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0005886
GenomeReviews:AL123456_GR GO:GO:0003723 EMBL:BX842582
HOGENOM:HOG000275916 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K06177 EMBL:CP003248 PIR:F70533 RefSeq:NP_217817.1
RefSeq:YP_006516777.1 ProteinModelPortal:O07166 SMR:O07166
EnsemblBacteria:EBMYCT00000003755 GeneID:13318123 GeneID:887958
KEGG:mtu:Rv3300c KEGG:mtv:RVBD_3300c PATRIC:18155955
TubercuList:Rv3300c OMA:FFRMHEV ProtClustDB:CLSK792416
Uniprot:O07166
Length = 305
Score = 196 (74.1 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 69/221 (31%), Positives = 103/221 (46%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP---PVMAWDVSILQKEPDVLTVCKPP 158
V G + D+ V S TV + H L+R P PV +DV +L ++ D++ V KP
Sbjct: 44 VLAGEVVDDDGAVVDSGTVLPPGSVVH-LYRDLPDEVPV-PFDVPVLHQDADIVVVDKPH 101
Query: 159 SVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEA 218
+ P G++ T + L+ E L L P HRLDRL +G+L+ ++
Sbjct: 102 FLATMPRGRHVAQTALVRLRRELGLPELSPAHRLDRLTAGVLLFTTRREVRGSYQTMFAR 161
Query: 219 GKVIKRYIARVNGVFPEG---EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKF 275
G V K Y+AR V P G ++V I ++ E G +T ++
Sbjct: 162 GLVRKTYLARAP-VAP-GLALPRLVRSRIVKRRGHLQAVCEPGVPNAETLVE-------- 211
Query: 276 TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
RI+ +G + + P TGRTHQ+RVH+ G PI D LY
Sbjct: 212 -RIARDGLYRLT---PTTGRTHQLRVHMAALGIPIMGDPLY 248
>TIGR_CMR|CHY_1119 [details] [associations]
symbol:CHY_1119 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
eggNOG:COG0564 TIGRFAMs:TIGR00005 RefSeq:YP_359965.1
ProteinModelPortal:Q3AD19 STRING:Q3AD19 GeneID:3727661
KEGG:chy:CHY_1119 PATRIC:21275376 OMA:ITHILAC
BioCyc:CHYD246194:GJCN-1118-MONOMER Uniprot:Q3AD19
Length = 301
Score = 194 (73.4 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 57/211 (27%), Positives = 102/211 (48%)
Query: 114 VPV-SYTVKSSQKISHFLHRHEPPVMAWD--VSILQKEPDVLTVCKPPSVPVHPCGQYRK 170
VP+ S+ + + H P V + + V +L ++ ++ + KP V HP +
Sbjct: 46 VPLNSHLTTPGEVVIKLPHTLPPAVQSQNAPVKVLYEDDYLIVIDKPAGVLAHPVKNHFA 105
Query: 171 NTVVGI-LQAEHDLAPLF----PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRY 225
++ + L D +F P++RLDR SG +++A+ + A++ + ++ K Y
Sbjct: 106 PSMQELTLSYYRDKGRIFEGFYPIYRLDRNTSGPMLIAKFSLIAEMLNNSLRKRQINKIY 165
Query: 226 IARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHS 285
+A + G P ++ +N+ G S + G G+ ACTK+ + TH+
Sbjct: 166 LALIEG--PLADKSGIINLPLGLLEG-SIIKRAVVPG-----GQPACTKYQTVKAFPTHT 217
Query: 286 IVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
++ E +TGRTHQIR H G+P+A D LY
Sbjct: 218 LLKVELLTGRTHQIRAHFAAIGHPLAGDDLY 248
>TIGR_CMR|APH_0549 [details] [associations]
symbol:APH_0549 "ribosomal large subunit pseudouridine
synthase C" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_505141.1
ProteinModelPortal:Q2GKG0 STRING:Q2GKG0 GeneID:3930562
KEGG:aph:APH_0549 PATRIC:20949758 OMA:YMIATIN
ProtClustDB:CLSK747316 BioCyc:APHA212042:GHPM-573-MONOMER
Uniprot:Q2GKG0
Length = 297
Score = 189 (71.6 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 58/176 (32%), Positives = 91/176 (51%)
Query: 143 SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLIL 202
+I+ K+ +++ + KP V V G ++ +L L VHRLDR SG+LI+
Sbjct: 77 NIIYKDENIIAINKPAGVNVQG-GTKVSISLSDLLNKIIPGEQLHIVHRLDRDTSGVLII 135
Query: 203 ARNASKADLFRQQIEAGKVIKRYIARVNGV--FPEGEQVVDVNINYNASAGRSTAESGDS 260
AR S A + +++ +V K YIA GV F +GE + + Y +SG
Sbjct: 136 ARGQSIARILSEELRFRRVRKEYIAVTKGVPAFSKGEITMPI---Y------CKKQSG-- 184
Query: 261 LGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+G+T L K A T F+ + ++ H+++L P+TGR HQ+R+HL PI D Y
Sbjct: 185 VGET-LIPKEAKTVFSVLQSSKRHAVMLLSPVTGRKHQLRIHLSQFCCPIIGDTKY 239
>TIGR_CMR|GSU_0671 [details] [associations]
symbol:GSU_0671 "ribosomal large subunit pseudouridine
synthase C" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 KO:K06179
RefSeq:NP_951728.1 ProteinModelPortal:Q74FD8 GeneID:2685543
KEGG:gsu:GSU0671 PATRIC:22024099 OMA:MKIEIGA ProtClustDB:CLSK827983
BioCyc:GSUL243231:GH27-690-MONOMER Uniprot:Q74FD8
Length = 296
Score = 119 (46.9 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 25/54 (46%), Positives = 31/54 (57%)
Query: 263 DTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
DTPL GK A T F ++ + S L PI+GR HQIR HL G+P+ D Y
Sbjct: 180 DTPLDGKDAHTDFRTLARDTAVSFALVIPISGRMHQIRKHLSAIGHPVRGDRRY 233
Score = 116 (45.9 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 37/123 (30%), Positives = 62/123 (50%)
Query: 119 TVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQ 178
T+K S + L +P + IL ++ + V KP +PVH + + +V +
Sbjct: 60 TIKESDRTRQLLAAAKP-----QLDILWEDDYCVIVNKPAGLPVHRTAEAGEANLVEL-- 112
Query: 179 AEHDLA------PLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
AEH +A L PV+RLDR SG ILA+++S A + + ++ + K Y+A +G
Sbjct: 113 AEHFMAGRGTAVKLRPVNRLDRGTSGATILAKSSSSAGMLGRYVKEEGLDKLYLAVTDGS 172
Query: 233 FPE 235
P+
Sbjct: 173 LPD 175
>TIGR_CMR|CHY_1505 [details] [associations]
symbol:CHY_1505 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
RefSeq:YP_360337.1 ProteinModelPortal:Q3ABZ7 STRING:Q3ABZ7
GeneID:3727865 KEGG:chy:CHY_1505 PATRIC:21276139
BioCyc:CHYD246194:GJCN-1504-MONOMER Uniprot:Q3ABZ7
Length = 305
Score = 186 (70.5 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 67/256 (26%), Positives = 119/256 (46%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSA-VKCGRIQVDEEMVPVSYTVKSSQKISHFLH 131
V + ++G + AE+ + ++ ++ G++ V+ SY V+ + I+ L
Sbjct: 9 VNSEYSGLRLDKFLAEQEELELSRSFIKKLIEEGKVTVNGLHRKASYKVRGGEIIAVLLP 68
Query: 132 R-HEPPVMAWDV--SILQKEPDVLTVCKPPSVPVHPC-GQYRKNTVVGILQAEHDLAP-- 185
E V ++ I+ ++ D++ V K + VHP G + V +L +L+
Sbjct: 69 PPRELSVKPEEIPLDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLVNALLYHCQNLSGIG 128
Query: 186 --LFP--VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
L P VHRLD+ SGLL++A+N +QI+ K ++ Y V+G E ++D
Sbjct: 129 GVLRPGIVHRLDKDTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWTIVHGYLKNKEGIID 188
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRIST-NGTHSIVLCEPITGRTHQIR 300
+ I + + A + GK A T + + N +++ + +TGRTHQIR
Sbjct: 189 LPIGRHPRDRQKMAVVSN--------GKTAQTVYKVLEEFNKGFTLIQAKLLTGRTHQIR 240
Query: 301 VHLQYTGYPIANDMLY 316
VH Y G+P+ D Y
Sbjct: 241 VHFSYLGHPVLGDPKY 256
>UNIPROTKB|P0AA37 [details] [associations]
symbol:rluA species:83333 "Escherichia coli K-12"
[GO:0031118 "rRNA pseudouridine synthesis" evidence=IMP]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IMP]
[GO:0009451 "RNA modification" evidence=IMP] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA;IMP] [GO:0001522
"pseudouridine synthesis" evidence=IMP] [GO:0008033 "tRNA
processing" evidence=IMP] [GO:0006364 "rRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000455
"enzyme-directed rRNA pseudouridine synthesis" evidence=IMP]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 HOGENOM:HOG000275919
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455
PIR:B64727 RefSeq:NP_414600.1 RefSeq:YP_488364.1 PDB:2I82
PDBsum:2I82 ProteinModelPortal:P0AA37 SMR:P0AA37 DIP:DIP-47988N
PRIDE:P0AA37 EnsemblBacteria:EBESCT00000004777
EnsemblBacteria:EBESCT00000017147 GeneID:12933046 GeneID:946262
KEGG:ecj:Y75_p0058 KEGG:eco:b0058 PATRIC:32115215 EchoBASE:EB2493
EcoGene:EG12609 KO:K06177 OMA:CQIVHRL ProtClustDB:PRK10158
BioCyc:EcoCyc:EG12609-MONOMER BioCyc:ECOL316407:JW0057-MONOMER
BioCyc:MetaCyc:EG12609-MONOMER EvolutionaryTrace:P0AA37
Genevestigator:P0AA37 Uniprot:P0AA37
Length = 219
Score = 170 (64.9 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 60/191 (31%), Positives = 101/191 (52%)
Query: 130 LHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCG-QYRKNTVVGILQAEHDLAPLFP 188
+ + PP W V IL ++ ++ V KP + P + K++V+ +Q ++ A
Sbjct: 3 MENYNPPQEPWLV-ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE--S 59
Query: 189 VHRLDRLVSGLLILA-RNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLD SG++++A A++ +L RQ E + K+Y+ARV G E +VD+ + +
Sbjct: 60 VHRLDMATSGVIVVALTKAAERELKRQFRER-EPKKQYVARVWGHPSPAEGLVDLPLICD 118
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRI--STNGTHSIVLCEPITGRTHQIRVHLQY 305
R + +T GK A T++ + + + T +VL +PITGR+HQ+RVH+
Sbjct: 119 WP-NRPKQKV---CYET---GKPAQTEYEVVEYAADNTARVVL-KPITGRSHQLRVHMLA 170
Query: 306 TGYPIANDMLY 316
G+PI D Y
Sbjct: 171 LGHPILGDRFY 181
>TIGR_CMR|CBU_0757 [details] [associations]
symbol:CBU_0757 "ribosomal large subunit pseudouridine
synthase D" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:YP_338280.2
GeneID:1208648 KEGG:cbu:CBU_0757 PATRIC:17930207
ProtClustDB:CLSK940427 BioCyc:CBUR227377:GJ7S-755-MONOMER
Uniprot:Q4AAY0
Length = 327
Score = 182 (69.1 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 62/249 (24%), Positives = 108/249 (43%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE-EMVPVSYTVKSSQKISHFLHRHEPP 136
AG + + A+ F + ++ G ++VD + V+ +Q I + P
Sbjct: 21 AGARLDQVLAKLFPDYSRSQLQNWIRGGHVKVDGIQKTKAREKVRENQFIE--IEAQLEP 78
Query: 137 VMAW-----DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP--- 188
W + ++ ++ +L + KP + VHP R T++ L + P
Sbjct: 79 NERWVPQPIPLDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALLHYDPSLSVVPRAG 138
Query: 189 -VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
+HRLD+ SGLL++AR + + ++A ++++ Y A V GV G +
Sbjct: 139 IIHRLDKDTSGLLLIARTLASHHALIKAMKARQIVREYEAIVKGVLISGRTI-------E 191
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTG 307
A GR + G+ A T F I H+ + + TGRTHQIRVH+ +
Sbjct: 192 APVGRHPIHR-TRMAVVEF-GRPAITHFRIIKRYRAHTHIRVQLETGRTHQIRVHMAHIH 249
Query: 308 YPIANDMLY 316
+P+A D +Y
Sbjct: 250 HPLAGDPVY 258
>UNIPROTKB|Q9KQH0 [details] [associations]
symbol:rluC "Ribosomal large subunit pseudouridine synthase
C" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 180 (68.4 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 70/263 (26%), Positives = 116/263 (44%)
Query: 68 EFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ--- 124
+FI + AG+ I + + K P ++ G ++V+++ V Y +++
Sbjct: 9 QFID-IDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR 67
Query: 125 --KISHFLHRHEPPVMAWDVS--------ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV 174
++ + +EP + +S I+ ++ +L + KP VH G +
Sbjct: 68 VPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHG-GSGLHFGAI 126
Query: 175 GILQAEHDLAPLFP-VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVF 233
L+A A VHR+DR SG+L++A+ S + Q V K Y A V G +
Sbjct: 127 EALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHW 186
Query: 234 PEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPIT 293
+VV+ + N E + P GK + T+F + ++V P+T
Sbjct: 187 DAECKVVNAPLLKN--------EVNSIVRVNP-NGKPSETRFRILEKFAEATLVQASPVT 237
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GRTHQIRVH QY G+PIA D Y
Sbjct: 238 GRTHQIRVHTQYMGHPIAWDDRY 260
>TIGR_CMR|VC_2028 [details] [associations]
symbol:VC_2028 "ribosomal large subunit pseudouridine
synthase C" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 180 (68.4 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 70/263 (26%), Positives = 116/263 (44%)
Query: 68 EFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ--- 124
+FI + AG+ I + + K P ++ G ++V+++ V Y +++
Sbjct: 9 QFID-IDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR 67
Query: 125 --KISHFLHRHEPPVMAWDVS--------ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV 174
++ + +EP + +S I+ ++ +L + KP VH G +
Sbjct: 68 VPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHG-GSGLHFGAI 126
Query: 175 GILQAEHDLAPLFP-VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVF 233
L+A A VHR+DR SG+L++A+ S + Q V K Y A V G +
Sbjct: 127 EALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHW 186
Query: 234 PEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPIT 293
+VV+ + N E + P GK + T+F + ++V P+T
Sbjct: 187 DAECKVVNAPLLKN--------EVNSIVRVNP-NGKPSETRFRILEKFAEATLVQASPVT 237
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GRTHQIRVH QY G+PIA D Y
Sbjct: 238 GRTHQIRVHTQYMGHPIAWDDRY 260
>UNIPROTKB|Q9KRH4 [details] [associations]
symbol:VC1668 "Pseudouridine synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0009451 KO:K06177 OMA:GWVIGDM
InterPro:IPR006508 TIGRFAMs:TIGR01621 EMBL:AE004244 PIR:E82173
RefSeq:NP_231304.1 ProteinModelPortal:Q9KRH4 DNASU:2613799
GeneID:2613799 KEGG:vch:VC1668 PATRIC:20082398
ProtClustDB:CLSK2298316 Uniprot:Q9KRH4
Length = 235
Score = 169 (64.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 57/173 (32%), Positives = 86/173 (49%)
Query: 144 ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILA 203
IL PD L + K P+V VH ++ + + L+ VHRLD++ SG+L+LA
Sbjct: 4 ILFTHPDFLLINKHPNVSVHK--DDGDTMLLQEVATQTGDGQLYLVHRLDKMTSGILLLA 61
Query: 204 RNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGD 263
RNA+ A Q KV K Y+A + P+ +Q + + S RS+ + +S +
Sbjct: 62 RNATAASELSQGFAKRKVEKFYLA-IGSKKPKKKQGLICG-DMERSR-RSSWKLVNSQ-E 117
Query: 264 TPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
P A T+F + + LC+P TG+THQIRV L+ G I D +Y
Sbjct: 118 NP-----AITQFFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAIVGDPIY 165
>TIGR_CMR|VC_1668 [details] [associations]
symbol:VC_1668 "pseudouridine synthase Rlu family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0009451 KO:K06177 OMA:GWVIGDM
InterPro:IPR006508 TIGRFAMs:TIGR01621 EMBL:AE004244 PIR:E82173
RefSeq:NP_231304.1 ProteinModelPortal:Q9KRH4 DNASU:2613799
GeneID:2613799 KEGG:vch:VC1668 PATRIC:20082398
ProtClustDB:CLSK2298316 Uniprot:Q9KRH4
Length = 235
Score = 169 (64.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 57/173 (32%), Positives = 86/173 (49%)
Query: 144 ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILA 203
IL PD L + K P+V VH ++ + + L+ VHRLD++ SG+L+LA
Sbjct: 4 ILFTHPDFLLINKHPNVSVHK--DDGDTMLLQEVATQTGDGQLYLVHRLDKMTSGILLLA 61
Query: 204 RNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGD 263
RNA+ A Q KV K Y+A + P+ +Q + + S RS+ + +S +
Sbjct: 62 RNATAASELSQGFAKRKVEKFYLA-IGSKKPKKKQGLICG-DMERSR-RSSWKLVNSQ-E 117
Query: 264 TPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
P A T+F + + LC+P TG+THQIRV L+ G I D +Y
Sbjct: 118 NP-----AITQFFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAIVGDPIY 165
>TIGR_CMR|CPS_2290 [details] [associations]
symbol:CPS_2290 "ribosomal large subunit pseudouridine
synthase C" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF
RefSeq:YP_269010.1 ProteinModelPortal:Q482K7 SMR:Q482K7
STRING:Q482K7 GeneID:3520678 KEGG:cps:CPS_2290 PATRIC:21467679
BioCyc:CPSY167879:GI48-2355-MONOMER Uniprot:Q482K7
Length = 360
Score = 181 (68.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 75/260 (28%), Positives = 117/260 (45%)
Query: 69 FISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV-PV-SYTVKSSQKI 126
FI+ + + AG+ I + KG P + ++ G I+V+++ + PV + +I
Sbjct: 54 FIT-IDSEDAGQRIDNFLLRTLKGVPKSHLYRLMRKGEIRVNKKRIKPVYKLLIDDEVRI 112
Query: 127 SHFLHRHEPPVMAWDVSI---LQK----EPDVLTVC-KPPSVPVHPCGQYRKNTVVGILQ 178
+ E ++ + I L+K E D L V KP + VH G ++ L+
Sbjct: 113 APIRVSEEKDAVSTGLHIVANLEKQILFEDDRLIVINKPSGMAVHG-GSGLSFGLIEALR 171
Query: 179 AEHDLAPLFP-VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEG- 236
A A + VHRLDR SG L++A+ S +Q V K Y A V G +P
Sbjct: 172 ALRPEARMLELVHRLDRDTSGCLMVAKKRSTLRHLHEQFRDKNVQKFYHALVKGHWPTKL 231
Query: 237 EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRT 296
+V D + +G + LG K + T+F + ++V P+TGRT
Sbjct: 232 TRVTDALKKNDLKSGERVVVVDNQLG------KESETRFRVLERYRGATLVRAFPVTGRT 285
Query: 297 HQIRVHLQYTGYPIANDMLY 316
HQIRVH Q +G+ IA D Y
Sbjct: 286 HQIRVHCQTSGHSIAMDAKY 305
>TIGR_CMR|CPS_4520 [details] [associations]
symbol:CPS_4520 "ribosomal large subunit pseudouridine
synthase A" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
KO:K06177 RefSeq:YP_271168.1 ProteinModelPortal:Q47VK4 SMR:Q47VK4
STRING:Q47VK4 GeneID:3518755 KEGG:cps:CPS_4520 PATRIC:21471863
OMA:FYATEEA ProtClustDB:CLSK757241
BioCyc:CPSY167879:GI48-4529-MONOMER Uniprot:Q47VK4
Length = 227
Score = 164 (62.8 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 59/185 (31%), Positives = 88/185 (47%)
Query: 141 DVSILQKEPDVLTVCKPPSVPVHP-CGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGL 199
D+ +L K +L+V P +P H C Q N V +L A + VHRLD SG+
Sbjct: 25 DIVVLNKASGILSV--PGRLPEHQDCLQ---NRVQRVLPT----ATI--VHRLDMATSGI 73
Query: 200 LILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGD 259
+I+A N +Q E K K Y+ARV G+ E VD+ + + R +
Sbjct: 74 MIMALNKPAHVAISRQFEQRKTQKSYLARVWGLVELNEGSVDLPL-ISDWPNRPKQKVDH 132
Query: 260 SLGDTPLKGKAACTKFTRISTNGT-----HSIVLCEPITGRTHQIRVHLQYTGYPIANDM 314
GK + T + +S N + ++++ PITGR+HQ+RVH+ G+PI D
Sbjct: 133 E------NGKKSLTHYRVLSHNDSIDEQANTLLELTPITGRSHQLRVHMLALGHPILGDR 186
Query: 315 LYLCE 319
LY E
Sbjct: 187 LYAPE 191
>TIGR_CMR|GSU_0082 [details] [associations]
symbol:GSU_0082 "ribosomal large subunit pseudouridine
synthase D" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:NP_951144.1
ProteinModelPortal:Q74H11 GeneID:2688326 KEGG:gsu:GSU0082
PATRIC:22022908 ProtClustDB:CLSK827625
BioCyc:GSUL243231:GH27-34-MONOMER Uniprot:Q74H11
Length = 322
Score = 174 (66.3 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 63/223 (28%), Positives = 107/223 (47%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM-AWDVS--ILQKEPDVLTVCKPPSVP 161
GR+ VD+ + S ++ +++ + P V A ++ +L ++ DV+ V KP +
Sbjct: 44 GRVTVDDRLEKPSLKLRGGERVVVTVPPPAPAVPEAEEIPLVVLHEDGDVVVVDKPAGMV 103
Query: 162 VHPCGQYRKNTVVGILQAE-HDLA----PLFP--VHRLDRLVSGLLILARNASKADLFRQ 214
VHP T+V L A DL+ + P VHR+D+ SG+L++A++ + +
Sbjct: 104 VHPAAGNPGGTLVNALLAHCTDLSGIGGEIRPGIVHRIDKDTSGVLVVAKSDRAHESLSR 163
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTK 274
Q V + Y+A V G E + ++ + GR + G GK A T
Sbjct: 164 QFHDHTVKRVYLALVYGSPREDKGRIE------GAIGRHPTDRKKMSG-AARHGKHAVTH 216
Query: 275 FTRISTNGTHSIVLCEPI-TGRTHQIRVHLQYTGYPIANDMLY 316
+ R++ T +L + TGRTHQIRVH+ G+P+ D +Y
Sbjct: 217 W-RVAARFTGVTLLRLRLETGRTHQIRVHMAEAGFPLVGDEVY 258
>UNIPROTKB|Q9KP71 [details] [associations]
symbol:rluA "Ribosomal large subunit pseudouridine synthase
A" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 166 (63.5 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 57/192 (29%), Positives = 91/192 (47%)
Query: 133 HEPPVMAWDVSILQKEPDVLTVCKPP---SVPVHPCGQYRKNTVVGILQAEHDLAP-LFP 188
+ PP W + ++ ++ ++ KP SVP P Y +++ L D P +
Sbjct: 6 YNPPKDPW-IDVIYEDEHIIAANKPSGLLSVPGRPVEHY--DSMWARLV---DYCPDVKV 59
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI--NY 246
VHRLD SGL++ A+ ++Q + K Y ARV GV + E V++ + ++
Sbjct: 60 VHRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDW 119
Query: 247 -NASAGRSTAESG-DSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
N + E G DSL T++ + ++V PITGR+HQ+RVH+Q
Sbjct: 120 PNRPKQKVCFEEGRDSL-----------TRYQVVKREEKTTVVRLIPITGRSHQLRVHMQ 168
Query: 305 YTGYPIANDMLY 316
G+PI D LY
Sbjct: 169 SLGHPIVGDDLY 180
>TIGR_CMR|VC_2505 [details] [associations]
symbol:VC_2505 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 166 (63.5 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 57/192 (29%), Positives = 91/192 (47%)
Query: 133 HEPPVMAWDVSILQKEPDVLTVCKPP---SVPVHPCGQYRKNTVVGILQAEHDLAP-LFP 188
+ PP W + ++ ++ ++ KP SVP P Y +++ L D P +
Sbjct: 6 YNPPKDPW-IDVIYEDEHIIAANKPSGLLSVPGRPVEHY--DSMWARLV---DYCPDVKV 59
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI--NY 246
VHRLD SGL++ A+ ++Q + K Y ARV GV + E V++ + ++
Sbjct: 60 VHRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDW 119
Query: 247 -NASAGRSTAESG-DSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
N + E G DSL T++ + ++V PITGR+HQ+RVH+Q
Sbjct: 120 PNRPKQKVCFEEGRDSL-----------TRYQVVKREEKTTVVRLIPITGRSHQLRVHMQ 168
Query: 305 YTGYPIANDMLY 316
G+PI D LY
Sbjct: 169 SLGHPIVGDDLY 180
>UNIPROTKB|Q4K5V9 [details] [associations]
symbol:rluD "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GO:GO:0006364
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
RefSeq:YP_262374.2 GeneID:3479698 KEGG:pfl:PFL_5306 PATRIC:19880091
ProtClustDB:CLSK868730 BioCyc:PFLU220664:GIX8-5347-MONOMER
Uniprot:Q4K5V9
Length = 320
Score = 171 (65.3 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 64/242 (26%), Positives = 110/242 (45%)
Query: 85 LFAEEFKGRPYDYYVSA-VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRH-EPPVMAWDV 142
LFAE + R +SA +K GR+ VD ++ V + + + +A D+
Sbjct: 27 LFAEHSRSR-----LSAWIKDGRLTVDGAVIRPRDIVHGGSILELTAEQEAQGEWIAQDI 81
Query: 143 S--ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF--P----VHRLDR 194
I+ ++ D+L + KP + VHP + T++ L H + + P VHRLD+
Sbjct: 82 ELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALL--HHIPDIINVPRAGIVHRLDK 139
Query: 195 LVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRST 254
+GL+++A+ Q+++ V + Y V GV G ++ NA GR
Sbjct: 140 DTTGLMVVAKTIQAQTQLVAQLQSRSVSRIYECIVIGVVTAGGKI-------NAPIGRH- 191
Query: 255 AESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDM 314
+ + GK A + + + +H+ V + TGRTHQIRVH+ + +P+ D
Sbjct: 192 GQQRQRMAVME-GGKQAVSHYRVLERFRSHTHVRVKLETGRTHQIRVHMAHINFPLVGDP 250
Query: 315 LY 316
Y
Sbjct: 251 AY 252
>TIGR_CMR|NSE_0556 [details] [associations]
symbol:NSE_0556 "ribosomal large subunit pseudouridine
synthase C" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_506438.1
ProteinModelPortal:Q2GDK8 STRING:Q2GDK8 GeneID:3931346
KEGG:nse:NSE_0556 PATRIC:22681159 OMA:DINDNNG
ProtClustDB:CLSK2527953 BioCyc:NSEN222891:GHFU-574-MONOMER
Uniprot:Q2GDK8
Length = 305
Score = 168 (64.2 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 55/176 (31%), Positives = 89/176 (50%)
Query: 144 ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPV-HRLDRLVSGLLIL 202
+L ++ +VL + KP PV Q I A + P + V HRLD+ +G+LI
Sbjct: 93 MLYEDENVLAISKPFGFPV----QSGYGITASIDNAMKSINPEYRVVHRLDKHTTGVLIF 148
Query: 203 ARNASKA-DLFRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDS 260
A+ A +L+R + + +++K+ Y+A V G E + VVD IN G + ++
Sbjct: 149 AKTLDAARELWR--LFSNRLVKKSYLAIVIGELKEKKGVVDCYINKVLFKGEEVMQC-NN 205
Query: 261 LGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+G+ G+ A T+F I S++ P+TGR HQIR + G+P+ ND Y
Sbjct: 206 IGN----GEHAITQFHVIKKFKNTSLIELFPLTGRKHQIRSQMASIGHPVLNDGKY 257
>TAIR|locus:2204355 [details] [associations]
symbol:AT1G76050 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 EMBL:AC007396 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 KO:K15452 EMBL:BX816325
EMBL:AK117781 IPI:IPI00528093 IPI:IPI00545612 RefSeq:NP_177732.2
RefSeq:NP_974151.1 UniGene:At.34707 UniGene:At.68569
UniGene:At.71876 ProteinModelPortal:Q3ECD0 SMR:Q3ECD0 STRING:Q3ECD0
PRIDE:Q3ECD0 EnsemblPlants:AT1G76050.2 GeneID:843937
KEGG:ath:AT1G76050 TAIR:At1g76050 InParanoid:Q3ECD0 OMA:GHCTDLS
PhylomeDB:Q3ECD0 ProtClustDB:CLSN2918520 Genevestigator:Q3ECD0
TIGRFAMs:TIGR00005 Uniprot:Q3ECD0
Length = 430
Score = 137 (53.3 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 38/131 (29%), Positives = 66/131 (50%)
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNA 248
VHRLD+ +GLL++A++ +Q + + + Y++ GV + +++ I ++
Sbjct: 230 VHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDS 289
Query: 249 SAG-RSTAESGDSLGDTPLKGKAACTKFTRIST--NGTHSIVLCEPITGRTHQIRVHLQY 305
S R A G G + + A +++ I T G ++V TGRTHQIR H +Y
Sbjct: 290 SNRIRMAAIPGGVRGG---RARHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAKY 346
Query: 306 TGYPIANDMLY 316
G P+ D +Y
Sbjct: 347 MGVPLLGDEVY 357
Score = 78 (32.5 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 100 SAVKCGRIQVDEEMVP-VSYTVKSSQKISHFLHRHEP-PVMAWDV--SILQKEPDVLTVC 155
S+++ G + V+ +V VS+ VKS +++ + +P A D+ I+ ++ VL V
Sbjct: 102 SSIRLGLVTVNGRVVDKVSHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVN 161
Query: 156 KPPSVPVHPCGQYRKNTVV-GIL 177
KP + VHP T+V GIL
Sbjct: 162 KPAHMVVHPAPGNPTGTLVNGIL 184
>UNIPROTKB|Q9KN61 [details] [associations]
symbol:VC_A0104 "Pseudouridine synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 157 (60.3 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 59/193 (30%), Positives = 91/193 (47%)
Query: 136 PVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP-LFPVHRLDR 194
P D++I+ ++ ++ V KP P G + ++V+ L+A+ A +F +HRLD
Sbjct: 12 PAQGQDITIVYQDDAIVVVNKPAEFLSVP-GVHVHDSVLTRLKAQFTQAEGVFALHRLDM 70
Query: 195 LVSGLLILA--RNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGR 252
SGLL+ A R A+K ++Q + V KRY+A + G E + + + +
Sbjct: 71 STSGLLVFALTRRANKQ--LQKQFISRAVQKRYVALIEGKLSETQGEIQLPL-------- 120
Query: 253 STAESGDSLGDTPLK------GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHL-QY 305
GD L D P + GK A T + + + V P TGRTHQ+RVH +
Sbjct: 121 ----CGD-LDDRPRQKVCWQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHH 175
Query: 306 TGY--PIANDMLY 316
G PI D LY
Sbjct: 176 LGLNAPIVGDDLY 188
>TIGR_CMR|VC_A0104 [details] [associations]
symbol:VC_A0104 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 157 (60.3 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 59/193 (30%), Positives = 91/193 (47%)
Query: 136 PVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP-LFPVHRLDR 194
P D++I+ ++ ++ V KP P G + ++V+ L+A+ A +F +HRLD
Sbjct: 12 PAQGQDITIVYQDDAIVVVNKPAEFLSVP-GVHVHDSVLTRLKAQFTQAEGVFALHRLDM 70
Query: 195 LVSGLLILA--RNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGR 252
SGLL+ A R A+K ++Q + V KRY+A + G E + + + +
Sbjct: 71 STSGLLVFALTRRANKQ--LQKQFISRAVQKRYVALIEGKLSETQGEIQLPL-------- 120
Query: 253 STAESGDSLGDTPLK------GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHL-QY 305
GD L D P + GK A T + + + V P TGRTHQ+RVH +
Sbjct: 121 ----CGD-LDDRPRQKVCWQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHH 175
Query: 306 TGY--PIANDMLY 316
G PI D LY
Sbjct: 176 LGLNAPIVGDDLY 188
>TIGR_CMR|APH_0362 [details] [associations]
symbol:APH_0362 "ribosomal large subunit pseudouridine
synthase, RluA family" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:GVIRREY RefSeq:YP_504969.1 ProteinModelPortal:Q2GKY2
STRING:Q2GKY2 GeneID:3930557 KEGG:aph:APH_0362 PATRIC:20949328
ProtClustDB:CLSK2463740 BioCyc:APHA212042:GHPM-391-MONOMER
Uniprot:Q2GKY2
Length = 324
Score = 166 (63.5 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 55/183 (30%), Positives = 89/183 (48%)
Query: 144 ILQKEPDVLTVCKPPSVPVHPCGQYRKN-TVVGILQAE--HDLAPLF----P--VHRLDR 194
I+ ++ ++ + K P++ VHP G KN T+ L A + L + P +HRLD+
Sbjct: 85 IIYEDEHIIVIDKAPNIAVHP-GHGTKNDTLAHALLAHCGNALCAVGNSHRPGIIHRLDK 143
Query: 195 LVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRST 254
SGL+++A+ + Q +E K K Y+A + GV + N++ S ++
Sbjct: 144 DTSGLMVIAKTEKAYLVLSQALEEKKFRKEYLALIWGVPTTKHCFIQTNLDVKRS-DKTM 202
Query: 255 AESGDSLGDTPLKGKAACTKFTRISTNGT-HSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
E T +GK A T++ T G S+ C TGRTHQIRVH+ + G+ + D
Sbjct: 203 MEV------TLSRGKHANTEYIIEKTFGNVASLARCILHTGRTHQIRVHMSHIGHSVVGD 256
Query: 314 MLY 316
Y
Sbjct: 257 QKY 259
>TIGR_CMR|GSU_3160 [details] [associations]
symbol:GSU_3160 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275920 KO:K06175
OMA:FANHSIE RefSeq:NP_954201.1 ProteinModelPortal:Q747V5
GeneID:2686768 KEGG:gsu:GSU3160 PATRIC:22029179
ProtClustDB:CLSK763245 BioCyc:GSUL243231:GH27-3194-MONOMER
Uniprot:Q747V5
Length = 250
Score = 161 (61.7 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 50/181 (27%), Positives = 84/181 (46%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP--LFPVHRLDRLVSGL 199
+ IL ++ ++ V KP + VH R T LQ DL ++PVHRLD+ SG+
Sbjct: 1 MEILFRDQYLVAVHKPAGLLVHRSPIDRHETRFA-LQEVRDLLGRRVYPVHRLDKPTSGV 59
Query: 200 LILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASA--GRSTAES 257
L+ A + + A G+V K Y+A G+ P E ++D +++ G ++ +
Sbjct: 60 LVFALDPATARSLGDAFAGGRVNKTYLAVTRGIVPP-EGIIDHSLSEEPDRLDGAKSSPA 118
Query: 258 GDSLGDTPLK--GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
T + +A T + +S+ P TGR HQ+R H+++ +PI D
Sbjct: 119 APQPAVTVFRRLAEAELPVVTGRYASSRYSLAELTPHTGRRHQLRRHMKHIFHPIIGDTT 178
Query: 316 Y 316
Y
Sbjct: 179 Y 179
>TIGR_CMR|CJE_0022 [details] [associations]
symbol:CJE_0022 "RNA pseudouridine synthase family
protein" species:195099 "Campylobacter jejuni RM1221" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06180
HOGENOM:HOG000275921 RefSeq:YP_178049.1 ProteinModelPortal:Q5HXD6
STRING:Q5HXD6 GeneID:3230677 KEGG:cjr:CJE0022 PATRIC:20041733
OMA:DFAHARV ProtClustDB:CLSK872338
BioCyc:CJEJ195099:GJC0-21-MONOMER Uniprot:Q5HXD6
Length = 300
Score = 163 (62.4 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 56/181 (30%), Positives = 88/181 (48%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPV-HRLDRLVSGLL 200
V I+ + D + K + HP G++ K ++ + H V HRLD+ SGL+
Sbjct: 69 VEIVFENEDFAILEKESGILSHPNGRHCKYSLSD--EIWHLWGKEACVAHRLDKETSGLI 126
Query: 201 ILARNASKADLFRQQIEAGKVI-KRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGD 259
++A+N KA + + + K++ K Y+A NG E ++D IN +
Sbjct: 127 LVAKN-KKAQIDLKALFEKKLVQKEYLALANGKIEENF-IIDKAINL-----AKNYDDVK 179
Query: 260 SLGDTPLKGKAACTKFTRIS----TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
+ +GK A T+F + N T ++LC+P+TGR HQIRVHL Y + I D L
Sbjct: 180 TRMQICKEGKQAITEFEILEYFPKINAT--LLLCKPLTGRQHQIRVHLHYKNHTILGDPL 237
Query: 316 Y 316
Y
Sbjct: 238 Y 238
>UNIPROTKB|E2R2N3 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Ensembl:ENSCAFT00000035707 Uniprot:E2R2N3
Length = 305
Score = 161 (61.7 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 64/222 (28%), Positives = 99/222 (44%)
Query: 115 PVSYTVKSSQKISHFLHRHEPPVMAWDVS--ILQKEPDVLTVCKPPSVPVH--PCGQYRK 170
PV V + + L R P V+A +S +L ++ D++ + KP +PVH P Q
Sbjct: 69 PVQRRVHELVRFTQQLQRVHPNVLAKALSRGVLHQDKDLVVINKPYGLPVHGGPGVQLCI 128
Query: 171 NTVVGILQAE---HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIA 227
+ V+ IL H PL HRLD+ +G+++LA A ++ +V K+Y A
Sbjct: 129 SDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQEFFRTRQVAKKYWA 188
Query: 228 RVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL-KGKA-----------ACTKF 275
V VVD+ I A G+ D + GK A T++
Sbjct: 189 ITVRVPVPSAGVVDIPITEKAVQGQQQHYKMTLSPDYRMDNGKMVRVRSNRNAHIAVTQY 248
Query: 276 TRISTNGTHSIVLCEPITGRTHQIRVHLQY-TGYPIANDMLY 316
+S+ + ++V +PITG HQ+RVHL + PI D Y
Sbjct: 249 HVLSSTLSSALVELQPITGIKHQLRVHLSFGLNCPILGDHKY 290
>UNIPROTKB|P0AA41 [details] [associations]
symbol:truC species:83333 "Escherichia coli K-12"
[GO:0006399 "tRNA metabolic process" evidence=IMP] [GO:0009451 "RNA
modification" evidence=IMP] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IMP] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA;IMP] [GO:0008033 "tRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U29581
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
eggNOG:COG0564 PIR:C65061 RefSeq:NP_417271.1 RefSeq:YP_490999.1
ProteinModelPortal:P0AA41 SMR:P0AA41
EnsemblBacteria:EBESCT00000002568 EnsemblBacteria:EBESCT00000016436
GeneID:12933253 GeneID:947242 KEGG:ecj:Y75_p2728 KEGG:eco:b2791
PATRIC:32120998 EchoBASE:EB2963 EcoGene:EG13171
HOGENOM:HOG000275920 KO:K06175 OMA:FHPIMGD ProtClustDB:PRK11112
BioCyc:EcoCyc:G7449-MONOMER BioCyc:ECOL316407:JW2762-MONOMER
BioCyc:MetaCyc:G7449-MONOMER Genevestigator:P0AA41 Uniprot:P0AA41
Length = 260
Score = 157 (60.3 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 56/179 (31%), Positives = 81/179 (45%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP--LFPVHRLDRLVSGL 199
+ IL ++ ++ V KP VH R VV ++Q D +F HRLDR SG+
Sbjct: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV-VMQTVRDQIGQHVFTAHRLDRPTSGV 60
Query: 200 LILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI--NYNASAGRSTAES 257
L++ ++ L QQ E ++ KRY A V G E E V+D + + A + E
Sbjct: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFARED 119
Query: 258 -GDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
G T +G A T + +V EP TGR HQ+R HL + +PI D
Sbjct: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178
>UNIPROTKB|F6XEH2 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 OMA:SKARYIP Ensembl:ENSCAFT00000035707
EMBL:AAEX03003379 ProteinModelPortal:F6XEH2 Uniprot:F6XEH2
Length = 378
Score = 161 (61.7 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 64/222 (28%), Positives = 99/222 (44%)
Query: 115 PVSYTVKSSQKISHFLHRHEPPVMAWDVS--ILQKEPDVLTVCKPPSVPVH--PCGQYRK 170
PV V + + L R P V+A +S +L ++ D++ + KP +PVH P Q
Sbjct: 69 PVQRRVHELVRFTQQLQRVHPNVLAKALSRGVLHQDKDLVVINKPYGLPVHGGPGVQLCI 128
Query: 171 NTVVGILQAE---HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIA 227
+ V+ IL H PL HRLD+ +G+++LA A ++ +V K+Y A
Sbjct: 129 SDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQEFFRTRQVAKKYWA 188
Query: 228 RVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL-KGKA-----------ACTKF 275
V VVD+ I A G+ D + GK A T++
Sbjct: 189 ITVRVPVPSAGVVDIPITEKAVQGQQQHYKMTLSPDYRMDNGKMVRVRSNRNAHIAVTQY 248
Query: 276 TRISTNGTHSIVLCEPITGRTHQIRVHLQY-TGYPIANDMLY 316
+S+ + ++V +PITG HQ+RVHL + PI D Y
Sbjct: 249 HVLSSTLSSALVELQPITGIKHQLRVHLSFGLNCPILGDHKY 290
>TIGR_CMR|GSU_3353 [details] [associations]
symbol:GSU_3353 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275914
RefSeq:NP_954393.1 ProteinModelPortal:Q747B4 GeneID:2686435
KEGG:gsu:GSU3353 PATRIC:22029561 OMA:WALLHRL ProtClustDB:CLSK829240
BioCyc:GSUL243231:GH27-3287-MONOMER Uniprot:Q747B4
Length = 296
Score = 158 (60.7 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 47/132 (35%), Positives = 65/132 (49%)
Query: 185 PLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI 244
P +HRLDR SG++I + A ++++ G+V K Y A V G+ VD +
Sbjct: 126 PARVIHRLDRGTSGVMIFPASRRAAAHISRELKEGRVEKVYWALVAGMPLADSWQVDAPV 185
Query: 245 NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
A G S G P+ GKAA T+F ++ ++V P TGRTHQIRVHL
Sbjct: 186 ---AKVGTSR------YGVAPV-GKAALTEFRVVARGNGATLVEARPRTGRTHQIRVHLA 235
Query: 305 YTGYPIANDMLY 316
+ G I D Y
Sbjct: 236 HGGLSIIGDTTY 247
>UNIPROTKB|Q96CM3 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0005739 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564 CTD:84881
HOVERGEN:HBG054698 HOGENOM:HOG000136349 OMA:SKARYIP
OrthoDB:EOG4FFD2H EMBL:AK027400 EMBL:BC014131 IPI:IPI00304069
RefSeq:NP_116184.2 UniGene:Hs.150458 ProteinModelPortal:Q96CM3
SMR:Q96CM3 STRING:Q96CM3 PhosphoSite:Q96CM3 DMDM:74731354
PaxDb:Q96CM3 PRIDE:Q96CM3 Ensembl:ENST00000298317 GeneID:84881
KEGG:hsa:84881 UCSC:uc001qde.3 GeneCards:GC11M126071
HGNC:HGNC:25898 HPA:HPA039689 neXtProt:NX_Q96CM3
PharmGKB:PA134875000 InParanoid:Q96CM3 PhylomeDB:Q96CM3
GenomeRNAi:84881 NextBio:75193 ArrayExpress:Q96CM3 Bgee:Q96CM3
CleanEx:HS_RPUSD4 Genevestigator:Q96CM3 Uniprot:Q96CM3
Length = 377
Score = 160 (61.4 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 65/232 (28%), Positives = 106/232 (45%)
Query: 110 DEEMVPVSYTV--KSSQKISHF---LHRHEPPVMAWDVS--ILQKEPDVLTVCKPPSVPV 162
D + PVS + Q+I F L R P V+A ++ IL ++ +++ + KP +PV
Sbjct: 58 DTKKEPVSTNAVQRRVQEIVRFTRQLQRVHPNVLAKALTRGILHQDKNLVVINKPYGLPV 117
Query: 163 H--PCGQYRKNTVVGILQAE---HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIE 217
H P Q V+ IL H PL HRLD+ +G+++LA + A ++
Sbjct: 118 HGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQELFR 177
Query: 218 AGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRS-----TAESGDSLGDTPL------ 266
+V+K+Y A V VVD+ I + G+ T + D +
Sbjct: 178 TRQVVKKYWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRS 237
Query: 267 -KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQY-TGYPIANDMLY 316
+ A T++ +S+ + ++V +PITG HQ+RVHL + PI D Y
Sbjct: 238 RNAQVAVTQYQVLSSTLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKY 289
>UNIPROTKB|E1BYI6 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0005739
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 CTD:84881 OMA:SKARYIP
EMBL:AADN02042045 EMBL:AADN02042046 IPI:IPI00819761
RefSeq:XP_001231937.2 Ensembl:ENSGALT00000041115 GeneID:768808
KEGG:gga:768808 Uniprot:E1BYI6
Length = 354
Score = 159 (61.0 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 68/263 (25%), Positives = 118/263 (44%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
AG AE + + + K + Q ++ V + +++++ L R P V
Sbjct: 21 AGAVRAQELAERLRAKRSEEEEEKKKKKKQQQQQQEVAAEPARRRARELAA-LQRVHPNV 79
Query: 138 MAWDV---SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQ------AEHDLAPLFP 188
+A + ++ Q E +V+ + KP +PVH G KN + +L PL
Sbjct: 80 LAKALRQRAVYQDE-EVVVLNKPYGLPVHG-GPGVKNCIADVLPILAKMLVNMKAEPLHL 137
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI---- 244
HRLD+ +G+++LARN AD R + +V K Y A G E +V++ +
Sbjct: 138 CHRLDKETTGVMVLARNKEAADRIRLLFKTRQVEKIYWAISVGSPDPAEGIVEIPMVERE 197
Query: 245 ------NYNASAG---RSTAESGDSLGDTPLKG-KAACTKFTRISTNGTHSIVLCEPITG 294
++ + R + E G L + ++A T++ ++++ S++ +PITG
Sbjct: 198 VQSHQPHFKMTLAPNYRMSPEDGKVLKIRKNRNAESAVTQYRVLASSSACSLLELQPITG 257
Query: 295 RTHQIRVHLQY-TGYPIANDMLY 316
HQ+RVHL Y G PI D Y
Sbjct: 258 VKHQLRVHLAYGLGCPILGDHKY 280
>UNIPROTKB|Q9KU20 [details] [associations]
symbol:rluD "Ribosomal large subunit pseudouridine synthase
D" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 158 (60.7 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 53/181 (29%), Positives = 89/181 (49%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHP-CGQYRKNTVVGILQAEHDLAPLFP----VHRLDRLV 196
++I+ ++ D++ + KP VHP GQ K TV+ L + P VHRLD+
Sbjct: 84 LNIVYEDDDIIVINKPRDFVVHPGAGQADK-TVLNALLFHYSPIAEVPRAGIVHRLDKDT 142
Query: 197 SGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAE 256
+GL+++A+ + ++ V + Y A V G G ++D I GR + +
Sbjct: 143 TGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAGG-MIDKPI------GRHSTK 195
Query: 257 SGDSLGDTPLKGKAACTKFTRISTN-GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
+ +P+ GK A T + R++ + H+ + TGRTHQIRVH+ Y +P+ D
Sbjct: 196 R-TLMSVSPM-GKHAVTHY-RVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTA 252
Query: 316 Y 316
Y
Sbjct: 253 Y 253
>TIGR_CMR|VC_0709 [details] [associations]
symbol:VC_0709 "ribosomal large subunit pseudouridine
synthase D" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 158 (60.7 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 53/181 (29%), Positives = 89/181 (49%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHP-CGQYRKNTVVGILQAEHDLAPLFP----VHRLDRLV 196
++I+ ++ D++ + KP VHP GQ K TV+ L + P VHRLD+
Sbjct: 84 LNIVYEDDDIIVINKPRDFVVHPGAGQADK-TVLNALLFHYSPIAEVPRAGIVHRLDKDT 142
Query: 197 SGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAE 256
+GL+++A+ + ++ V + Y A V G G ++D I GR + +
Sbjct: 143 TGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAGG-MIDKPI------GRHSTK 195
Query: 257 SGDSLGDTPLKGKAACTKFTRISTN-GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
+ +P+ GK A T + R++ + H+ + TGRTHQIRVH+ Y +P+ D
Sbjct: 196 R-TLMSVSPM-GKHAVTHY-RVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTA 252
Query: 316 Y 316
Y
Sbjct: 253 Y 253
>TIGR_CMR|CPS_4080 [details] [associations]
symbol:CPS_4080 "pseudouridine synthase Rlu family
protein, TIGR01621" species:167879 "Colwellia psychrerythraea 34H"
[GO:0001522 "pseudouridine synthesis" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06177
RefSeq:YP_270735.1 STRING:Q47WT7 GeneID:3519849 KEGG:cps:CPS_4080
PATRIC:21471031 HOGENOM:HOG000275915 OMA:GWVIGDM
BioCyc:CPSY167879:GI48-4093-MONOMER InterPro:IPR006508
TIGRFAMs:TIGR01621 Uniprot:Q47WT7
Length = 230
Score = 151 (58.2 bits), Expect = 8.3e-09, P = 8.3e-09
Identities = 51/171 (29%), Positives = 83/171 (48%)
Query: 150 DVLTVCKPPSVPVHPCGQYRK---NTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNA 206
D + V K V H G + V LQ++++ L+PVHRLD++ SGL++ A+
Sbjct: 10 DFIVVDKEAGVNFHDEGDIGSGLFSLVKKQLQSQNNNTELYPVHRLDKMTSGLVVFAKTL 69
Query: 207 SKADLFRQQIEAGKVIKRYIARVNGVFPEGEQ-VVDVNINYNASAGRSTAESGDSLGDTP 265
+ A +F Q + K Y+A + P +Q ++ ++ A + R + S+ + P
Sbjct: 70 ACAQIFGQLFNDHDIEKYYLA-IGDKKPIKKQGLIKGDM---AKSRRGMFKLLRSM-ENP 124
Query: 266 LKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F S + L +P +G+THQ+RV L G PI D LY
Sbjct: 125 -----AVTQFFSFSIPNKQRLYLLKPHSGKTHQLRVALASIGAPIVGDPLY 170
>TIGR_CMR|SPO_3392 [details] [associations]
symbol:SPO_3392 "ribosomal large subunit pseudouridine
synthase A" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
TIGRFAMs:TIGR00005 KO:K06177 OMA:CQIVHRL RefSeq:YP_168588.1
ProteinModelPortal:Q5LN20 SMR:Q5LN20 GeneID:3194821
KEGG:sil:SPO3392 PATRIC:23380239 ProtClustDB:CLSK934145
Uniprot:Q5LN20
Length = 215
Score = 148 (57.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 55/186 (29%), Positives = 86/186 (46%)
Query: 133 HEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPLFPVHR 191
+ PP DV L ++ +++ + KP + P G + + ++ +QA A L VHR
Sbjct: 5 YNPPQDPLDV--LHEDAELIVLNKPAGLLSVPGRGAHLADCLLSRVQAAFPGALL--VHR 60
Query: 192 LDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN-ASA 250
LDR SG+++ A+ +Q E K K Y+AR+ G VD+ + + +
Sbjct: 61 LDRDTSGVMVFAQTPHAQRNLGRQFEERKTRKTYVARLWGRLEPKTGTVDLPLIVDWPNR 120
Query: 251 GRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPI 310
R +T GK A T + + G + V P TGR+HQ+RVH Q G+PI
Sbjct: 121 PRQMV-----CHET---GKPAVTDWRVLRYEGDTTRVRLLPRTGRSHQLRVHCQALGHPI 172
Query: 311 ANDMLY 316
D Y
Sbjct: 173 LGDPFY 178
>UNIPROTKB|F1S6H1 [details] [associations]
symbol:LOC100737111 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 OMA:SKARYIP EMBL:CU466237
EMBL:FP102836 RefSeq:XP_003482691.1 Ensembl:ENSSSCT00000016599
Ensembl:ENSSSCT00000025330 GeneID:100737111 KEGG:ssc:100737111
Uniprot:F1S6H1
Length = 376
Score = 157 (60.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 61/222 (27%), Positives = 100/222 (45%)
Query: 115 PVSYTVKSSQKISHFLHRHEPPVMAWDVS--ILQKEPDVLTVCKPPSVPVH--PCGQYRK 170
PV V+ + + L R P V+A +S I+ ++ D+L + KP +PVH P Q
Sbjct: 67 PVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGGPGVQLCI 126
Query: 171 NTVVGILQA---EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIA 227
+ V+ IL H PL HRLD+ +G+++LA A ++ +V K+Y A
Sbjct: 127 SDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQVAKKYWA 186
Query: 228 RVNGVFPEGEQVVDVNINYNASAGRST-----------AESGDSLG-DTPLKGKAACTKF 275
V VVD+ I G+ ++G + T A T++
Sbjct: 187 ITVRVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNAHLAVTQY 246
Query: 276 TRISTNGTHSIVLCEPITGRTHQIRVHLQY-TGYPIANDMLY 316
+S+ + +++ +P+TG HQ+RVHL + PI D Y
Sbjct: 247 QVLSSTLSSALLELQPVTGIKHQLRVHLSFGLDCPILGDHKY 288
>TIGR_CMR|SPO_0516 [details] [associations]
symbol:SPO_0516 "ribosomal large subunit pseudouridine
synthase C" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 OMA:GEKMLCI
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_165778.1
ProteinModelPortal:Q5LW27 GeneID:3196070 KEGG:sil:SPO0516
PATRIC:23374295 ProtClustDB:CLSK933288 Uniprot:Q5LW27
Length = 347
Score = 154 (59.3 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 55/184 (29%), Positives = 80/184 (43%)
Query: 144 ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA---EHDLAPLFPVHRLDRLVSGLL 200
+L ++ D++ + KP + V G + V G+ +A +D P VHRLD+ SG+L
Sbjct: 93 VLHRDDDIIVLNKPAGLAVQG-GSGQTRHVDGLSEALRFGNDENPRL-VHRLDKDTSGVL 150
Query: 201 ILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDS 260
+LAR A K Y A V GV P + ++ + G G+
Sbjct: 151 VLARTREAAARLTAAFRHRNTRKIYWALVAGV-PT-PYLGEIKTGLVKAGGHGARGEGEK 208
Query: 261 LG-------DTPLKGKAACTKF-TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAN 312
+ D K A T + T G S V EP+TGRTHQ+R H+ G+PI
Sbjct: 209 MNVVHLSELDATPGAKRAHTYYATLYRVAGRASWVAMEPVTGRTHQLRAHMAGIGHPIIG 268
Query: 313 DMLY 316
D Y
Sbjct: 269 DGKY 272
>ZFIN|ZDB-GENE-060929-444 [details] [associations]
symbol:rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
ZFIN:ZDB-GENE-060929-444 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 CTD:113000 HOGENOM:HOG000047212
HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10 EMBL:BC124362 IPI:IPI00800847
RefSeq:NP_001070221.1 UniGene:Dr.5843 ProteinModelPortal:Q08C69
STRING:Q08C69 GeneID:767786 KEGG:dre:767786 InParanoid:Q08C69
NextBio:20918166 ArrayExpress:Q08C69 Uniprot:Q08C69
Length = 293
Score = 152 (58.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 54/195 (27%), Positives = 83/195 (42%)
Query: 136 PVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF-P------ 188
P ++S+L + + + V K + + Y K TV Q +H L P
Sbjct: 3 PASLENLSVLYQSTNYIVVNKHWDIRIDSKMWYEKQTVQS--QLKHHFPELADPGTYYGF 60
Query: 189 --VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
H+LD SG L +A N + A + + +V K Y+A V G E +D I
Sbjct: 61 RFCHQLDFSTSGALCVALNKAAAGQAYRCFKDRRVTKAYLALVRGTVTEENLSLDFAIGK 120
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-----SIVLCEPITGRTHQIRV 301
N + G++ + G + C + GT+ + VL +P+TGRTHQ+RV
Sbjct: 121 NTTEGKTHMMCTE--GTEGCENPKPCQTEVTVLEYGTYDGDQVTKVLLQPLTGRTHQLRV 178
Query: 302 HLQYTGYPIANDMLY 316
H G+PI D Y
Sbjct: 179 HCSAIGHPIVGDYTY 193
>TIGR_CMR|CPS_3915 [details] [associations]
symbol:CPS_3915 "ribosomal large subunit pseudouridine
synthase D" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
ProtClustDB:PRK11180 RefSeq:YP_270573.1 ProteinModelPortal:Q47X97
SMR:Q47X97 STRING:Q47X97 GeneID:3521018 KEGG:cps:CPS_3915
PATRIC:21470721 BioCyc:CPSY167879:GI48-3928-MONOMER Uniprot:Q47X97
Length = 324
Score = 153 (58.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 47/180 (26%), Positives = 88/180 (48%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP----VHRLDRLVS 197
++I+ ++ +L + KP + VHP T++ L + + P VHRLD+ +
Sbjct: 84 LNIVYEDDYILVINKPAGLVVHPGAGNPDGTLLNALLHHYPALNVVPRAGIVHRLDKDTT 143
Query: 198 GLLILARN-ASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAE 256
GL+++A+ A++ +L ++ ++ + Y A NGV G +VD I +++ A
Sbjct: 144 GLMVVAKTIAAQTNLV-DALQLREITREYEAVANGVMTAGG-LVDEPIGRHSTKRTQMAV 201
Query: 257 SGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
S G+ + T + + H+ + TGRTHQIRVH+ + +P+ D +Y
Sbjct: 202 S--------YIGRPSVTHYRVMEKYRLHTRLRLRLETGRTHQIRVHMSHITHPLVGDPVY 253
>TIGR_CMR|NSE_0146 [details] [associations]
symbol:NSE_0146 "ribosomal large subunit pseudouridine
synthases, RluA family" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_506045.1
ProteinModelPortal:Q2GEQ1 STRING:Q2GEQ1 GeneID:3931949
KEGG:nse:NSE_0146 PATRIC:22680393 OMA:GVIRREY
ProtClustDB:CLSK2527656 BioCyc:NSEN222891:GHFU-181-MONOMER
Uniprot:Q2GEQ1
Length = 330
Score = 151 (58.2 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 58/181 (32%), Positives = 85/181 (46%)
Query: 148 EPD-VLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF------P--VHRLDRLVSG 198
E D +L + KP + VHP R+ T+V IL+ + L P VHRLD+ +G
Sbjct: 84 EDDCLLVIYKPAGLVVHPGIGNREQTLVNILEHHYPTEKLSSLDSSRPGIVHRLDKDTAG 143
Query: 199 LLILAR-NASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAES 257
LI+A+ N + L Q I+ G + + Y+A V+ V P + I G+
Sbjct: 144 FLIVAKTNPAHLSL-SQMIKEGVIRREYLALVHSV-PAS---LSGEIKKPIKRGQRKMMI 198
Query: 258 GDSLGDTPLKGKAACTKFTRISTNGTH--SIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
G GK A T + I+ S+V C +GRTHQIR+H++ G P+ D L
Sbjct: 199 GRC------SGKPALTYYGVIARTVDRKCSLVHCRLGSGRTHQIRLHMKSIGCPVVGDKL 252
Query: 316 Y 316
Y
Sbjct: 253 Y 253
>UNIPROTKB|E9PML2 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 CTD:84881
UniGene:Hs.150458 GeneID:84881 KEGG:hsa:84881 HGNC:HGNC:25898
GenomeRNAi:84881 NextBio:75193 EMBL:AP001893 IPI:IPI00921381
RefSeq:NP_001138299.1 ProteinModelPortal:E9PML2 SMR:E9PML2
Ensembl:ENST00000533628 UCSC:uc009zbz.3 ArrayExpress:E9PML2
Bgee:E9PML2 Uniprot:E9PML2
Length = 346
Score = 112 (44.5 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 44/147 (29%), Positives = 70/147 (47%)
Query: 110 DEEMVPVSYTV--KSSQKISHF---LHRHEPPVMAWDVS--ILQKEPDVLTVCKPPSVPV 162
D + PVS + Q+I F L R P V+A ++ IL ++ +++ + KP +PV
Sbjct: 58 DTKKEPVSTNAVQRRVQEIVRFTRQLQRVHPNVLAKALTRGILHQDKNLVVINKPYGLPV 117
Query: 163 H--PCGQYRKNTVVGILQAE---HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIE 217
H P Q V+ IL H PL HRLD+ +G+++LA + A ++
Sbjct: 118 HGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQELFR 177
Query: 218 AGKVIKRYIARVNGVFPEGEQVVDVNI 244
+V+K+Y A V VVD+ I
Sbjct: 178 TRQVVKKYWAITVHVPMPSAGVVDIPI 204
Score = 82 (33.9 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 263 DTPL---KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQY-TGYPIANDMLY 316
D P+ + + A T++ +S+ + ++V +PITG HQ+RVHL + PI D Y
Sbjct: 201 DIPIVEKEAQVAVTQYQVLSSTLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKY 258
>UNIPROTKB|Q17QT4 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9913 "Bos taurus" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
EMBL:BC118196 IPI:IPI00690305 RefSeq:NP_001069342.1
UniGene:Bt.55430 STRING:Q17QT4 Ensembl:ENSBTAT00000000204
GeneID:525521 KEGG:bta:525521 CTD:113000 HOGENOM:HOG000047212
HOVERGEN:HBG096261 InParanoid:Q17QT4 OMA:MMLHAHL OrthoDB:EOG4RXZ10
NextBio:20874185 Uniprot:Q17QT4
Length = 308
Score = 149 (57.5 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 43/134 (32%), Positives = 65/134 (48%)
Query: 190 HRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNAS 249
H+LD SG L +A N + A + + +V K Y+A V G E + I N++
Sbjct: 64 HQLDFSTSGALCVALNKAAAGSAYRCFKDRRVTKAYLALVRGHVQESRMTISYAIGKNST 123
Query: 250 AGRSTAE--SGDSLGDTPLKGKAACTKFTRISTNGTH-----SIVLCEPITGRTHQIRVH 302
GR+ G + P K + T+ + +G + S VL +P+TGRTHQ+RVH
Sbjct: 124 EGRTHTMCIEGTQGCENP---KPSLTELV-VLEHGLYAGDPVSKVLLQPLTGRTHQLRVH 179
Query: 303 LQYTGYPIANDMLY 316
G+PI D+ Y
Sbjct: 180 CSALGHPIVGDLTY 193
>MGI|MGI:1919186 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 MGI:MGI:1919186
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
HSSP:P0AA39 eggNOG:COG0564 GeneTree:ENSGT00510000048339 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:AK049334 EMBL:BC018186 IPI:IPI00165813 RefSeq:NP_082285.1
UniGene:Mm.24603 ProteinModelPortal:Q8VCZ8 SMR:Q8VCZ8 STRING:Q8VCZ8
PhosphoSite:Q8VCZ8 PRIDE:Q8VCZ8 Ensembl:ENSMUST00000047273
GeneID:106707 KEGG:mmu:106707 UCSC:uc008bbl.1 InParanoid:Q8VCZ8
OMA:QESITHY NextBio:358344 Bgee:Q8VCZ8 CleanEx:MM_RPUSD1
Genevestigator:Q8VCZ8 Uniprot:Q8VCZ8
Length = 306
Score = 148 (57.2 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 190 HRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNAS 249
H+LD SG L +A N + A + + +V K Y+A V G E + ++ I N++
Sbjct: 64 HQLDFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESQVTINYAIGRNST 123
Query: 250 AGRSTAE--SGDSLGDTPLKGKAACTKFTRISTNGTH-----SIVLCEPITGRTHQIRVH 302
GR+ G + P K + T+ + +G + S VL +P+TGRTHQ+RVH
Sbjct: 124 EGRTHTMCIEGTHGCENP---KPSLTELL-VLEHGLYAGDPVSKVLLKPLTGRTHQLRVH 179
Query: 303 LQYTGYPIANDMLY 316
G+PI D+ Y
Sbjct: 180 CSALGHPIVGDLTY 193
>RGD|1304934 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain containing 1"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
RGD:1304934 GO:GO:0003723 EMBL:CH473948 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
CTD:113000 HOGENOM:HOG000047212 HOVERGEN:HBG096261 OMA:MMLHAHL
OrthoDB:EOG4RXZ10 EMBL:BC161966 IPI:IPI00369268
RefSeq:NP_001099244.1 UniGene:Rn.98412 STRING:B1WC14
Ensembl:ENSRNOT00000015206 GeneID:287148 KEGG:rno:287148
UCSC:RGD:1304934 NextBio:625615 Genevestigator:B1WC14
Uniprot:B1WC14
Length = 306
Score = 148 (57.2 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 190 HRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNAS 249
H+LD SG L +A N + A + + +V K Y+A V G E + ++ I N++
Sbjct: 64 HQLDFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESQVTINYAIGRNST 123
Query: 250 AGRSTAE--SGDSLGDTPLKGKAACTKFTRISTNGTHS-----IVLCEPITGRTHQIRVH 302
GR+ G + P K + T+ + +G +S VL +P+TGRTHQ+RVH
Sbjct: 124 EGRTHTMCIEGTHGCENP---KPSLTELL-VLEHGLYSGDPVSKVLLKPLTGRTHQLRVH 179
Query: 303 LQYTGYPIANDMLY 316
G+PI D+ Y
Sbjct: 180 CSALGHPIVGDLTY 193
>UNIPROTKB|F1RG52 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GeneTree:ENSGT00510000048339 OMA:MMLHAHL
EMBL:FP016225 RefSeq:XP_003124746.1 UniGene:Ssc.2915
Ensembl:ENSSSCT00000008768 GeneID:100524553 KEGG:ssc:100524553
Uniprot:F1RG52
Length = 312
Score = 148 (57.2 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 43/134 (32%), Positives = 65/134 (48%)
Query: 190 HRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNAS 249
H+LD SG L +A N + A + + +V K Y+A V G E + I N++
Sbjct: 64 HQLDFSTSGALCVALNKAAAGSAYRCFKDRRVTKAYLALVRGHIQESRVTISYAIGKNST 123
Query: 250 AGRSTAE--SGDSLGDTPLKGKAACTKFTRISTNGTH-----SIVLCEPITGRTHQIRVH 302
GR+ G + P K + T+ + +G + S VL +P+TGRTHQ+RVH
Sbjct: 124 EGRTHTMCIEGTQGCENP---KPSLTELV-VLEHGLYGGDPVSKVLLQPLTGRTHQLRVH 179
Query: 303 LQYTGYPIANDMLY 316
G+PI D+ Y
Sbjct: 180 CSALGHPIVGDLTY 193
>ZFIN|ZDB-GENE-040801-238 [details] [associations]
symbol:zgc:92006 "zgc:92006" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
ZFIN:ZDB-GENE-040801-238 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
GeneTree:ENSGT00530000063800 HOVERGEN:HBG054698 EMBL:BC078405
IPI:IPI00495929 RefSeq:NP_001003495.1 UniGene:Dr.79840
ProteinModelPortal:Q6DBR0 STRING:Q6DBR0 Ensembl:ENSDART00000020283
GeneID:445101 KEGG:dre:445101 HOGENOM:HOG000136349
InParanoid:Q6DBR0 OMA:SKARYIP OrthoDB:EOG4FFD2H NextBio:20831865
ArrayExpress:Q6DBR0 Bgee:Q6DBR0 Uniprot:Q6DBR0
Length = 358
Score = 147 (56.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 62/234 (26%), Positives = 104/234 (44%)
Query: 110 DEEMVPVS---YTVKSSQKISHFLHRHEPPVMAWDV--SILQKEPDVLTVCKPPSVPVHP 164
D+ VPVS V ++ S L P V A + S L ++ +++ + KP VP+H
Sbjct: 52 DKNEVPVSPLQSRVNELKQFSQQLQSVHPSVFAKALYRSSLYEDQNIIAINKPYDVPLHN 111
Query: 165 CGQYRKNTVVGIL----QAEHDLAP---LFPVHRLDRLVSGLLILARNASKADLFRQQIE 217
R N++ L + ++ P L H+L++ +G+LILA+ A+ + I+
Sbjct: 112 INGIR-NSIAECLPLLAKITDNMRPGSQLHLCHKLEKETTGVLILAKTEEAAEHVQTLIQ 170
Query: 218 AGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRS------------TAESGDSLGDTP 265
+ KV +Y+A GV E V+D+ + A G E GD +
Sbjct: 171 SHKVEMKYLAITVGVPVPSEGVIDIPVIERAVVGPQPHFKMALSPLFKVNEDGDGVTRVR 230
Query: 266 L--KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT-GYPIANDMLY 316
+ AA T++ + S+V +P+TG +Q+RVH+ PI D Y
Sbjct: 231 AHRQAHAAVTRYQVLDNTSGCSLVELQPLTGVKNQLRVHMALALTCPILGDHKY 284
>UNIPROTKB|P33643 [details] [associations]
symbol:rluD "23S rRNA pseudouridine synthase" species:83333
"Escherichia coli K-12" [GO:0000455 "enzyme-directed rRNA
pseudouridine synthesis" evidence=IMP] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0000027 GO:GO:0009982 SUPFAM:SSF55120
EMBL:X57620 EMBL:U50134 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 PIR:E65037
RefSeq:NP_417085.1 RefSeq:YP_490818.1 PDB:1PRZ PDB:1QYU PDB:1V9F
PDB:2IST PDBsum:1PRZ PDBsum:1QYU PDBsum:1V9F PDBsum:2IST
ProteinModelPortal:P33643 SMR:P33643 DIP:DIP-10721N IntAct:P33643
PRIDE:P33643 EnsemblBacteria:EBESCT00000000818
EnsemblBacteria:EBESCT00000015233 GeneID:12934203 GeneID:947087
KEGG:ecj:Y75_p2543 KEGG:eco:b2594 PATRIC:32120591 EchoBASE:EB2022
EcoGene:EG12098 KO:K06180 OMA:KTIPAQT ProtClustDB:PRK11180
BioCyc:EcoCyc:EG12098-MONOMER BioCyc:ECOL316407:JW2576-MONOMER
BioCyc:MetaCyc:EG12098-MONOMER EvolutionaryTrace:P33643
Genevestigator:P33643 Uniprot:P33643
Length = 326
Score = 146 (56.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 52/191 (27%), Positives = 87/191 (45%)
Query: 132 RHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL--FP- 188
R EP + D I+ ++ D++ + KP + VHP TV+ L H P+ P
Sbjct: 76 RFEPQDIPLD--IVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL--HYYPPIADVPR 131
Query: 189 ---VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNIN 245
VHRLD+ +GL+++A+ + ++ ++ + Y A G G VD I+
Sbjct: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG-TVDEPIS 190
Query: 246 YNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQY 305
+ + A P+ GK A T + + H+ + TGRTHQIRVH+ +
Sbjct: 191 RHPTKRTHMAVH-------PM-GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242
Query: 306 TGYPIANDMLY 316
+P+ D +Y
Sbjct: 243 ITHPLVGDPVY 253
>UNIPROTKB|E2R7K0 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00510000048339
CTD:113000 OMA:MMLHAHL EMBL:AAEX03004670 RefSeq:XP_547206.2
ProteinModelPortal:E2R7K0 Ensembl:ENSCAFT00000031177 GeneID:490085
KEGG:cfa:490085 NextBio:20863184 Uniprot:E2R7K0
Length = 302
Score = 144 (55.7 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 41/134 (30%), Positives = 65/134 (48%)
Query: 190 HRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNAS 249
H+LD SG L +A N + A + + +V K Y+A V G E ++ I N++
Sbjct: 64 HQLDFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESRMTINYAIGRNST 123
Query: 250 AGRSTAE--SGDSLGDTPLKGKAACTKFTRISTNGTH-----SIVLCEPITGRTHQIRVH 302
GR+ G + P K + T+ + +G + S VL +P+TGRTHQ+RVH
Sbjct: 124 EGRAHTMCIEGTEGCENP---KPSLTELV-VLEHGLYAGDPVSKVLLQPLTGRTHQLRVH 179
Query: 303 LQYTGYPIANDMLY 316
+P+ D+ Y
Sbjct: 180 CSALSHPVVGDLTY 193
>TIGR_CMR|CPS_0536 [details] [associations]
symbol:CPS_0536 "RNA pseudouridine synthase family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06177
RefSeq:YP_267294.1 ProteinModelPortal:Q489H0 STRING:Q489H0
GeneID:3520534 KEGG:cps:CPS_0536 PATRIC:21464415
HOGENOM:HOG000222064 OMA:MAEFWWG ProtClustDB:CLSK896118
BioCyc:CPSY167879:GI48-631-MONOMER Uniprot:Q489H0
Length = 567
Score = 148 (57.2 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 59/208 (28%), Positives = 93/208 (44%)
Query: 136 PVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDR 194
P D+ I+ ++ V+ V KP + P G+ K++V ++ + A VHRLD
Sbjct: 358 PAEGIDLEIVFQDEHVVVVNKPAGLLSVP-GKSIKDSVYTRIKTQFPQASGGLIVHRLDM 416
Query: 195 LVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE--GEQVVDVNINYNASAGR 252
SGLL+LA N +QQ ++ KRY+A + G + GE + + +++ +
Sbjct: 417 ATSGLLMLALNERAHKHLQQQFMNKEINKRYVATIEGKLEKTSGEICLPLRGDFDDRPKQ 476
Query: 253 STAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT---GYP 309
GK A T + I S + PITGRTHQ+R+H + P
Sbjct: 477 MVCHE---------HGKYAETHWQLIEEVDNTSKLFLYPITGRTHQLRMHCAHPDGLNLP 527
Query: 310 IANDMLYLCEHVTHREGMSADRAAAYSH 337
I D LY H R + A R + ++H
Sbjct: 528 IIGDSLY--GHSADRLHLHAQRLS-FTH 552
>UNIPROTKB|Q9UJJ7 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:CH471112 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:AL031033 EMBL:AE006465 HSSP:P0AA39 eggNOG:COG0564 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:BC011783 IPI:IPI00016510 RefSeq:NP_478072.1 UniGene:Hs.101742
ProteinModelPortal:Q9UJJ7 SMR:Q9UJJ7 IntAct:Q9UJJ7 STRING:Q9UJJ7
PhosphoSite:Q9UJJ7 DMDM:74753357 PRIDE:Q9UJJ7 DNASU:113000
Ensembl:ENST00000007264 Ensembl:ENST00000561734 GeneID:113000
KEGG:hsa:113000 UCSC:uc002cka.3 GeneCards:GC16M000834
HGNC:HGNC:14173 HPA:HPA041144 HPA:HPA041938 neXtProt:NX_Q9UJJ7
PharmGKB:PA25556 InParanoid:Q9UJJ7 OMA:VSGREDR PhylomeDB:Q9UJJ7
GenomeRNAi:113000 NextBio:78731 Bgee:Q9UJJ7 CleanEx:HS_RPUSD1
Genevestigator:Q9UJJ7 Uniprot:Q9UJJ7
Length = 312
Score = 142 (55.0 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 43/134 (32%), Positives = 66/134 (49%)
Query: 190 HRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNAS 249
H+LD SG L +A N + A + + +V K Y+A + G E + I N++
Sbjct: 64 HQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGRNST 123
Query: 250 AGRS-TAESGDSLG-DTPLKGKAACTKFTRISTNGTH-----SIVLCEPITGRTHQIRVH 302
GR+ T S G + P K + T + +G + S VL +P+TGRTHQ+RVH
Sbjct: 124 EGRAHTMCIEGSQGCENP---KPSLTDLV-VLEHGLYAGDPVSKVLLKPLTGRTHQLRVH 179
Query: 303 LQYTGYPIANDMLY 316
G+P+ D+ Y
Sbjct: 180 CSALGHPVVGDLTY 193
>TIGR_CMR|CJE_1416 [details] [associations]
symbol:CJE_1416 "ribosomal large subunit pseudouridine
synthases, RluA family" species:195099 "Campylobacter jejuni
RM1221" [GO:0009451 "RNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0004730 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:VSGREDR RefSeq:YP_179402.1 ProteinModelPortal:Q5HTI3
STRING:Q5HTI3 GeneID:3231922 KEGG:cjr:CJE1416 PATRIC:20044634
ProtClustDB:CLSK872435 BioCyc:CJEJ195099:GJC0-1443-MONOMER
Uniprot:Q5HTI3
Length = 322
Score = 138 (53.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 48/185 (25%), Positives = 89/185 (48%)
Query: 140 WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVG-ILQAEHDLAPLFP------VHRL 192
+D+ +L ++ D+L + KP ++ VH + T+V +++ ++ L+ L VHRL
Sbjct: 75 FDIDVLYEDEDLLVLNKPSNLVVHGASSVKNATLVDWLIEKKYTLSNLGGEIRAGLVHRL 134
Query: 193 DRLVSGLLILARNASKADLFRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAG 251
D+ SG +++A+N +Q+ A K + R Y+A ++ E + +V+ + + S
Sbjct: 135 DKDTSGSILIAKNNFTHQKLSEQL-ADKSMGRIYLALIDLPLKEDKIIVEKFLMRSPS-- 191
Query: 252 RSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIA 311
A ++ K A + F + +++ + TGRTHQIR HL I
Sbjct: 192 --NAIKKIAIDKENKFSKNAKSAFINVVKTENLTLMAAKLFTGRTHQIRAHLASLNRHIL 249
Query: 312 NDMLY 316
D LY
Sbjct: 250 GDGLY 254
>UNIPROTKB|E1C0L7 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00510000048339
OMA:MMLHAHL EMBL:AADN02023681 EMBL:AADN02023682 IPI:IPI00585704
Ensembl:ENSGALT00000008518 Uniprot:E1C0L7
Length = 254
Score = 132 (51.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 52/187 (27%), Positives = 78/187 (41%)
Query: 141 DVSILQKEPDVLTVCKPPSVPVHPCGQYRK--NTVVGILQAEH---DLA-PLFPVHRLDR 194
++ IL + PD + V K + + Y+ T+ Q +H DLA P H L
Sbjct: 8 NLCILYQSPDFIVVNKHWDIRIDSMMWYQDAYETLTLQSQLKHRFPDLADPDTFQHLLGF 67
Query: 195 LVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRST 254
SG L A N + A + + V K Y+A V G + + I N G +
Sbjct: 68 STSGALCFALNKAAAGSAYKCFKDRLVTKAYLALVRGHVDQSRMTIRYAIGKNTVEGMTH 127
Query: 255 AESGDSLGDTPLKGKAACTKFTRISTNGTHS-----IVLCEPITGRTHQIRVHLQYTGYP 309
+ G + C + +G++S VL +P+TGRTHQ+RVH G+P
Sbjct: 128 MMCIE--GTEGCENPKPCQSELIVLEHGSYSGDPVTKVLLQPLTGRTHQLRVHCSAIGHP 185
Query: 310 IANDMLY 316
I D Y
Sbjct: 186 IVGDFTY 192
>TAIR|locus:2090689 [details] [associations]
symbol:AT3G19440 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 GO:GO:0005739 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB025624 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
HOGENOM:HOG000242909 EMBL:AK228911 EMBL:BT030392 IPI:IPI00521714
RefSeq:NP_188575.1 UniGene:At.38404 ProteinModelPortal:Q9LT72
SMR:Q9LT72 STRING:Q9LT72 PaxDb:Q9LT72 PRIDE:Q9LT72
EnsemblPlants:AT3G19440.1 GeneID:821478 KEGG:ath:AT3G19440
TAIR:At3g19440 InParanoid:Q9LT72 OMA:GEKMLCI PhylomeDB:Q9LT72
ProtClustDB:CLSN2684585 Genevestigator:Q9LT72 Uniprot:Q9LT72
Length = 477
Score = 136 (52.9 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 56/195 (28%), Positives = 89/195 (45%)
Query: 144 ILQKEPDVLTVCKPPSVPVHPCGQYRKNTV----VGILQAEHDLAPLFPVHRLDRLVSGL 199
+L K+P ++ + KP + V G K ++ L+ + +P VHRLDR SGL
Sbjct: 185 VLYKDPAIIVLNKPHGLAVQG-GSGIKTSIDELAASCLKFDKSESPRL-VHRLDRDCSGL 242
Query: 200 LILARNASKA----DLFRQQIEAG---------KVIKR-YIARVNGVFPEGEQVVDVNIN 245
L+LAR + A +FR++ K +KR Y+A V G P + +
Sbjct: 243 LVLARTQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLR 302
Query: 246 -YNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCE--PITGRTHQIRVH 302
G+S + + G+ + + A T++ R+ + H E P+TGR HQ+RVH
Sbjct: 303 KVVVDDGKSERITVNDNGEL-VSTQHAITEY-RVIESSPHGYTWLELRPLTGRKHQLRVH 360
Query: 303 L-QYTGYPIANDMLY 316
+ G PI D Y
Sbjct: 361 CAEVLGTPIVGDYKY 375
>DICTYBASE|DDB_G0271796 [details] [associations]
symbol:DDB_G0271796 "pseudouridine synthase family
protein" species:44689 "Dictyostelium discoideum" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 dictyBase:DDB_G0271796 GO:GO:0003723
EMBL:AAFI02000006 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0564 RefSeq:XP_645472.1 ProteinModelPortal:Q55AQ0
EnsemblProtists:DDB0304384 GeneID:8618100 KEGG:ddi:DDB_G0271796
OMA:RIDYATS Uniprot:Q55AQ0
Length = 316
Score = 99 (39.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 33/132 (25%), Positives = 60/132 (45%)
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+ Q+I + R P ++ L KE + V KP V + R TVV ++
Sbjct: 1 MSQQQQIKSYDGRIPPTDPKYETIYLDKE--YIVVNKPFDVNIDDETGERLTTVVKYIET 58
Query: 180 EHD--LAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237
E+ + V+R+D SGL++++ N + + ++ + K Y+A V+G E
Sbjct: 59 EYPEHFGNVRFVNRIDYATSGLVVVSFNKKSTTVAMELFQSRETSKTYLAIVHGHMEFDE 118
Query: 238 QVVDVNINYNAS 249
++D I Y+ S
Sbjct: 119 SIIDKPIQYDTS 130
Score = 72 (30.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 287 VLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
V+ P TGR HQ+RVHL G+ I D Y
Sbjct: 238 VMLFPKTGRRHQLRVHLLSIGHVIVGDETY 267
>TIGR_CMR|CJE_0808 [details] [associations]
symbol:CJE_0808 "RNA pseudouridine synthase family
protein" species:195099 "Campylobacter jejuni RM1221" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06180
RefSeq:YP_178812.1 ProteinModelPortal:Q5HV73 STRING:Q5HV73
GeneID:3230758 KEGG:cjr:CJE0808 PATRIC:20043361
HOGENOM:HOG000275921 OMA:YITSEEI ProtClustDB:CLSK872473
BioCyc:CJEJ195099:GJC0-823-MONOMER Uniprot:Q5HV73
Length = 250
Score = 123 (48.4 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 36/128 (28%), Positives = 61/128 (47%)
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNA 248
++RLD+ SG+++L ++ L ++ + +V K YIA ++GV E +V + A
Sbjct: 89 LNRLDKETSGVILLCKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKA 148
Query: 249 SAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGY 308
G + S D L +A + T I ++ TGRTHQIRVH ++ +
Sbjct: 149 KGGALSKVSKDGL--------SALSIITPIMMQSKKTLAKIVIQTGRTHQIRVHAKFIKH 200
Query: 309 PIANDMLY 316
+ D Y
Sbjct: 201 GVVGDEKY 208
>RGD|1311268 [details] [associations]
symbol:Rpusd4 "RNA pseudouridylate synthase domain containing 4"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 RGD:1311268 GO:GO:0005739
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
HSSP:P0AA39 eggNOG:COG0564 GeneTree:ENSGT00530000063800 CTD:84881
HOVERGEN:HBG054698 HOGENOM:HOG000136349 OMA:SKARYIP
OrthoDB:EOG4FFD2H EMBL:BC098023 IPI:IPI00362584
RefSeq:NP_001020455.1 UniGene:Rn.232042 ProteinModelPortal:Q4QQT0
PRIDE:Q4QQT0 Ensembl:ENSRNOT00000015670 GeneID:315550
KEGG:rno:315550 UCSC:RGD:1311268 InParanoid:Q4QQT0 NextBio:669410
Genevestigator:Q4QQT0 Uniprot:Q4QQT0
Length = 377
Score = 125 (49.1 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 44/145 (30%), Positives = 69/145 (47%)
Query: 115 PVSYTVKSSQKISHFLHRHEPPVMAWDVS--ILQKEPDVLTVCKPPSVPVH--PCGQYRK 170
PV V+ + + L R P V+A ++S IL ++ D++ + KP +PVH P Q
Sbjct: 68 PVQRRVQELVRFTQQLQRVHPNVLAKELSRRILHQDKDLVVINKPYGLPVHGGPGVQLCI 127
Query: 171 NTVVGILQAE---HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIA 227
+ V+ IL H PL HRLD+ +G+++LA A ++ +V K+Y A
Sbjct: 128 SDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKDMAHQVQELFRTRQVEKKYWA 187
Query: 228 RVNGVFPEGEQVVDVNINYNASAGR 252
V VVD+ I AG+
Sbjct: 188 ITVRVPLPSAGVVDIPIMEKEVAGQ 212
Score = 115 (45.5 bits), Expect = 0.00064, P = 0.00064
Identities = 42/149 (28%), Positives = 68/149 (45%)
Query: 181 HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVV 240
H PL HRLD+ +G+++LA A ++ +V K+Y A V VV
Sbjct: 141 HKAEPLHLCHRLDKETTGVMVLAWEKDMAHQVQELFRTRQVEKKYWAITVRVPLPSAGVV 200
Query: 241 DVNINYNASAGRS-----TAESGDSLGDTPL-KGKA------ACTKFTRISTNGTHSIVL 288
D+ I AG+ T + + + K +A A T++ +S+ + ++V
Sbjct: 201 DIPIMEKEVAGQQQHHKMTLRPSYRMDNGKMVKVRASRDAHVAVTQYQVLSSTPSSALVE 260
Query: 289 CEPITGRTHQIRVHLQY-TGYPIANDMLY 316
+P+TG HQ+RVHL + PI D Y
Sbjct: 261 LQPVTGIKHQLRVHLAFGLDCPILGDHKY 289
>TIGR_CMR|CPS_3649 [details] [associations]
symbol:CPS_3649 "tRNA pseudouridine synthase C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 HOGENOM:HOG000275920
KO:K06175 RefSeq:YP_270317.1 ProteinModelPortal:Q47Y03
STRING:Q47Y03 GeneID:3523321 KEGG:cps:CPS_3649 PATRIC:21470223
OMA:EIANAVC BioCyc:CPSY167879:GI48-3671-MONOMER Uniprot:Q47Y03
Length = 304
Score = 85 (35.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 284 HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+S++ PITGR HQIR HL + +PI D+ Y
Sbjct: 214 YSLIEVRPITGRRHQIRRHLAHLRHPILGDINY 246
Score = 77 (32.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 134 EPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP--LFPVHR 191
E PV+ IL ++ ++ V KP + VH K+ + LQ D ++PVHR
Sbjct: 17 EKPVL----DILYQDEYMVAVDKPAGLFVHR-SYMDKDEIYFALQLVRDQVGQYVYPVHR 71
Query: 192 LDRLVSGLLILA 203
LDR SG+L+ A
Sbjct: 72 LDRPTSGVLLFA 83
>MGI|MGI:1919239 [details] [associations]
symbol:Rpusd4 "RNA pseudouridylate synthase domain
containing 4" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
MGI:MGI:1919239 GO:GO:0005739 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
GeneTree:ENSGT00530000063800 CTD:84881 HOVERGEN:HBG054698
HOGENOM:HOG000136349 OMA:SKARYIP OrthoDB:EOG4FFD2H EMBL:AK010322
EMBL:AK156574 EMBL:BC061256 IPI:IPI00109744 RefSeq:NP_082316.1
UniGene:Mm.273515 UniGene:Mm.474966 ProteinModelPortal:Q9CWX4
SMR:Q9CWX4 STRING:Q9CWX4 PhosphoSite:Q9CWX4 PRIDE:Q9CWX4
Ensembl:ENSMUST00000034543 GeneID:71989 KEGG:mmu:71989
UCSC:uc009otc.1 InParanoid:Q9CWX4 NextBio:335146 Bgee:Q9CWX4
CleanEx:MM_RPUSD4 Genevestigator:Q9CWX4 Uniprot:Q9CWX4
Length = 377
Score = 120 (47.3 bits), Expect = 0.00018, P = 0.00018
Identities = 42/137 (30%), Positives = 66/137 (48%)
Query: 115 PVSYTVKSSQKISHFLHRHEPPVMAWDVS--ILQKEPDVLTVCKPPSVPVH--PCGQYRK 170
PV V+ + + L R P V+A ++S IL ++ D++ + KP +PVH P Q
Sbjct: 68 PVQRRVQELVRFTQQLQRVHPNVLAKELSRRILHQDNDLVVINKPYGLPVHGGPGVQLCI 127
Query: 171 NTVVGILQAE---HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIA 227
+ V+ IL H PL HRLD+ +G+++LA A ++ +V K+Y A
Sbjct: 128 SDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKDMAHQVQELFRTRQVEKKYWA 187
Query: 228 RVNGVFPEGEQVVDVNI 244
V VVD+ I
Sbjct: 188 ITVRVPLPSAGVVDIPI 204
Score = 115 (45.5 bits), Expect = 0.00064, P = 0.00064
Identities = 42/149 (28%), Positives = 67/149 (44%)
Query: 181 HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVV 240
H PL HRLD+ +G+++LA A ++ +V K+Y A V VV
Sbjct: 141 HKAEPLHLCHRLDKETTGVMVLAWEKDMAHQVQELFRTRQVEKKYWAITVRVPLPSAGVV 200
Query: 241 DVNINYNASAG-----RSTAESGDSLGDTPL-KGKA------ACTKFTRISTNGTHSIVL 288
D+ I G + T L + + K +A A T++ +S+ + ++V
Sbjct: 201 DIPIKEKEVQGPQQHHKMTLSPSYRLDNGKMVKVRASRDAHVAVTQYQVLSSASSSALVE 260
Query: 289 CEPITGRTHQIRVHLQY-TGYPIANDMLY 316
+P+TG HQ+RVHL + PI D Y
Sbjct: 261 LQPVTGIKHQLRVHLSFGLDCPILGDHKY 289
>UNIPROTKB|Q9KTL4 [details] [associations]
symbol:truC "tRNA pseudouridine synthase C" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG0564
KO:K06175 ProtClustDB:PRK11112 PIR:G82266 RefSeq:NP_230535.1
ProteinModelPortal:Q9KTL4 DNASU:2614117 GeneID:2614117
KEGG:vch:VC0888 PATRIC:20080874 OMA:FANHSIE Uniprot:Q9KTL4
Length = 244
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 50/199 (25%), Positives = 81/199 (40%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP--LFPVHRLDRLVSGL 199
+ I+ ++ ++ V KP + VH + T ++Q D +FP+HRLDR SG+
Sbjct: 2 LEIVYQDEYLVAVNKPAGMLVHRSWLDKHETEF-VMQTLRDQIGQHVFPLHRLDRPTSGV 60
Query: 200 LILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGD 259
L+ A ++ A ++ K Y A V G E V+D + D
Sbjct: 61 LVFALSSQIASEVMPMFANHEMEKTYHAIVRGWIEEAN-VLDYPLKEELDKIADKFAKQD 119
Query: 260 SLGDTPLKGKAACTKFTR-ISTNGTHSIVLC----EPITGRTHQIRVHLQYTGYPIANDM 314
+ + K I+T + C +P TGR HQ+R H+ + +PI D
Sbjct: 120 KEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVGDT 179
Query: 315 LYL--CEHVTHREGMSADR 331
+ + RE SA R
Sbjct: 180 THGDGVHNRLFREHFSAQR 198
>TIGR_CMR|VC_0888 [details] [associations]
symbol:VC_0888 "pseudouridine synthase Rlu family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG0564
KO:K06175 ProtClustDB:PRK11112 PIR:G82266 RefSeq:NP_230535.1
ProteinModelPortal:Q9KTL4 DNASU:2614117 GeneID:2614117
KEGG:vch:VC0888 PATRIC:20080874 OMA:FANHSIE Uniprot:Q9KTL4
Length = 244
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 50/199 (25%), Positives = 81/199 (40%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP--LFPVHRLDRLVSGL 199
+ I+ ++ ++ V KP + VH + T ++Q D +FP+HRLDR SG+
Sbjct: 2 LEIVYQDEYLVAVNKPAGMLVHRSWLDKHETEF-VMQTLRDQIGQHVFPLHRLDRPTSGV 60
Query: 200 LILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGD 259
L+ A ++ A ++ K Y A V G E V+D + D
Sbjct: 61 LVFALSSQIASEVMPMFANHEMEKTYHAIVRGWIEEAN-VLDYPLKEELDKIADKFAKQD 119
Query: 260 SLGDTPLKGKAACTKFTR-ISTNGTHSIVLC----EPITGRTHQIRVHLQYTGYPIANDM 314
+ + K I+T + C +P TGR HQ+R H+ + +PI D
Sbjct: 120 KEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVGDT 179
Query: 315 LYL--CEHVTHREGMSADR 331
+ + RE SA R
Sbjct: 180 THGDGVHNRLFREHFSAQR 198
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.410 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 399 356 0.00080 117 3 11 22 0.38 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 87
No. of states in DFA: 614 (65 KB)
Total size of DFA: 252 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.16u 0.11s 27.27t Elapsed: 00:00:02
Total cpu time: 27.17u 0.11s 27.28t Elapsed: 00:00:02
Start: Tue May 21 00:56:59 2013 End: Tue May 21 00:57:01 2013