BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015839
(399 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255540129|ref|XP_002511129.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223550244|gb|EEF51731.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
Length = 385
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 288/396 (72%), Positives = 312/396 (78%), Gaps = 34/396 (8%)
Query: 1 MKRKREEEKSKANDSNSNGNGNGNGNGNGNGNSSNNMEIVWQTPANPPVKEDYIFRDGRR 60
MKRKREEE + N+MEIVWQTPANPP K DYIFRDGRR
Sbjct: 1 MKRKREEE------------------------NKNDMEIVWQTPANPPEKHDYIFRDGRR 36
Query: 61 NVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTV 120
+V+PYYFEFISH KNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVD E VPVSY V
Sbjct: 37 HVRPYYFEFISHAKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDGETVPVSYIV 96
Query: 121 KSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE 180
KSSQKISHFLHRHEPPV AWD+ +L K+PDV+TV KP +VPVHPCGQYRKNTVVGILQAE
Sbjct: 97 KSSQKISHFLHRHEPPVTAWDIPVLYKDPDVVTVYKPATVPVHPCGQYRKNTVVGILQAE 156
Query: 181 HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVV 240
H+LAPLFPVHRLDRLVSGLLILARNA KADLFRQ+IEAG V K+Y+A+V GVFPE EQVV
Sbjct: 157 HNLAPLFPVHRLDRLVSGLLILARNALKADLFRQEIEAGMVQKQYVAKVVGVFPEDEQVV 216
Query: 241 DVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIR 300
VNINYNA GRSTAE G+S D+P KGK ACTKFTRISTNGTHSIVLC+PITGRTHQIR
Sbjct: 217 GVNINYNAREGRSTAEVGNSCVDSPPKGKTACTKFTRISTNGTHSIVLCKPITGRTHQIR 276
Query: 301 VHLQYTGYPIANDMLYLCEHVTHR--EGMSADRAAAYSHHSPPP---VSSDKSESSSEDF 355
VHLQYTG+PIAND LYL EH R EGMSADRAA S + P S E+S +DF
Sbjct: 277 VHLQYTGHPIANDFLYLSEHAASRSAEGMSADRAACSSSYCVTPQDFCSDTHEENSVQDF 336
Query: 356 SIDPMCTNCPNLAPKGKRLLSSNSLEDLCYGHMRQY 391
SIDPMCTNCPNLAPKG + E+ + H QY
Sbjct: 337 SIDPMCTNCPNLAPKG-----YDVYEECLWLHCVQY 367
>gi|224134072|ref|XP_002321729.1| predicted protein [Populus trichocarpa]
gi|222868725|gb|EEF05856.1| predicted protein [Populus trichocarpa]
Length = 388
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 278/373 (74%), Positives = 310/373 (83%), Gaps = 10/373 (2%)
Query: 27 GNGNGNSSNNMEIVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLF 86
G + MEIVWQTPANPP K DYIFRDGRR+V+PY+FEFISHVKNRWAGKTIVDLF
Sbjct: 6 GEKEEAAEKKMEIVWQTPANPPEKHDYIFRDGRRHVRPYHFEFISHVKNRWAGKTIVDLF 65
Query: 87 AEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQ 146
AEEFKGRPYDYYVSAVKCGRIQVD EMVPVSY VKSSQKISHF+HRHEPPVMAWDV IL
Sbjct: 66 AEEFKGRPYDYYVSAVKCGRIQVDGEMVPVSYIVKSSQKISHFVHRHEPPVMAWDVPILD 125
Query: 147 KEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNA 206
KE DV+TV KP +VPVHPCGQYRKNTVVG+LQAEH LAPLFPVHRLDRLVSGLLILARNA
Sbjct: 126 KEDDVVTVWKPATVPVHPCGQYRKNTVVGVLQAEHGLAPLFPVHRLDRLVSGLLILARNA 185
Query: 207 SKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL 266
++ADLFRQ+IEAGKV K+Y+A+V GVFPE EQ+VDVN+NYNA GRST E G+S +P+
Sbjct: 186 TRADLFRQEIEAGKVQKQYVAKVIGVFPEDEQIVDVNVNYNAREGRSTVEVGNSCDGSPI 245
Query: 267 KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHR-- 324
KGK ACTKFTRI TNG HSIVLC+PITGRTHQIRVHLQYTG+PIAND+LYL E+VT+R
Sbjct: 246 KGKTACTKFTRIGTNGIHSIVLCKPITGRTHQIRVHLQYTGHPIANDILYLSENVTNRSS 305
Query: 325 EGMSADRAAAYSHHS--PPPVSSDKSE-SSSEDFSIDPMCTNCPNLAPKGKRLLSSNSLE 381
EG++ADRAA ++ P SSDK E S+ EDF IDPMCTNCPNL PKG + E
Sbjct: 306 EGVNADRAAHSPNNCLVPENNSSDKYEDSTEEDFDIDPMCTNCPNLVPKG-----YDGHE 360
Query: 382 DLCYGHMRQYQTS 394
+ + H QY S
Sbjct: 361 EGLWLHCVQYSGS 373
>gi|359491112|ref|XP_003634223.1| PREDICTED: RNA pseudourine synthase 7-like isoform 2 [Vitis
vinifera]
gi|359491114|ref|XP_002280549.2| PREDICTED: RNA pseudourine synthase 7-like isoform 1 [Vitis
vinifera]
Length = 386
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 273/349 (78%), Positives = 303/349 (86%), Gaps = 10/349 (2%)
Query: 32 NSSNNMEIVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFK 91
+ + MEIVWQTPANPP + DYIFR+G+R+V+PYYFEFISHVKNRWAGKTIVDLF EEFK
Sbjct: 6 DEAAEMEIVWQTPANPPERHDYIFRNGKRHVRPYYFEFISHVKNRWAGKTIVDLFTEEFK 65
Query: 92 GRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDV 151
GRPYDYYV+AV+ GRIQVD EMVPVSY V+SSQKISHF+HRHEPPV+A DVS+LQKEPDV
Sbjct: 66 GRPYDYYVNAVQSGRIQVDGEMVPVSYIVRSSQKISHFVHRHEPPVLALDVSVLQKEPDV 125
Query: 152 LTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADL 211
LT+CKP SVPVHPCGQYRKNTVVGILQAEH LAPLFP+HRLDRLVSGLLILAR+ASKAD
Sbjct: 126 LTICKPASVPVHPCGQYRKNTVVGILQAEHGLAPLFPIHRLDRLVSGLLILARSASKADS 185
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
FRQQIEAG V K+YIA+V GVFP+ EQVV+VN+NYNA GRST E G+ G+TPLKGK+A
Sbjct: 186 FRQQIEAGMVQKQYIAKVTGVFPDDEQVVNVNVNYNAREGRSTVEVGNCCGNTPLKGKSA 245
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHR--EGMSA 329
CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTG+PIANDMLYL E R +G+SA
Sbjct: 246 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGHPIANDMLYLSEFSVDRSTKGLSA 305
Query: 330 DRAAAYSHHSPPPVSSDKS-------ESSSEDFSIDPMCTNCPNLAPKG 371
DRAAA S S P SS KS ++S+ DFSIDPMCTNCPNL PKG
Sbjct: 306 DRAAANSGCSLPS-SSPKSCVDEYCDDNSTVDFSIDPMCTNCPNLTPKG 353
>gi|449440959|ref|XP_004138251.1| PREDICTED: RNA pseudourine synthase 7-like [Cucumis sativus]
gi|449501468|ref|XP_004161375.1| PREDICTED: RNA pseudourine synthase 7-like [Cucumis sativus]
Length = 393
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 264/340 (77%), Positives = 287/340 (84%), Gaps = 7/340 (2%)
Query: 39 IVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYY 98
IVWQTP NPP + DYIF +GRR+V+PYYFEFI+HVKNRWAGKTIVDLFAEEFKGRPY+YY
Sbjct: 21 IVWQTPDNPPQRSDYIFHNGRRHVRPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYEYY 80
Query: 99 VSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPP 158
V AV+CGRIQVD EMVPVSY VKSSQKISHFLHRHEPPVMAW V +L++E +VLTVCKP
Sbjct: 81 VDAVECGRIQVDGEMVPVSYIVKSSQKISHFLHRHEPPVMAWGVKVLKEEEEVLTVCKPA 140
Query: 159 SVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEA 218
SVPVHPCGQYRKNTVVGIL+AEH LAPLFP+HRLDRLVSGLLILARNASKADLFRQQIE+
Sbjct: 141 SVPVHPCGQYRKNTVVGILEAEHGLAPLFPIHRLDRLVSGLLILARNASKADLFRQQIES 200
Query: 219 GKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI 278
G V K+YIARV GVFPE EQVVD NINYN GRSTAE DS DT KGKAA TKFTRI
Sbjct: 201 GLVKKQYIARVVGVFPEEEQVVDANINYNPREGRSTAEMVDSSTDTRTKGKAAQTKFTRI 260
Query: 279 STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHR--EGMSADRAAAYS 336
S++G HSIV CEPITGRTHQIRVHLQYTGYPIAND LYL + + R + +ADRAAA S
Sbjct: 261 SSDGVHSIVSCEPITGRTHQIRVHLQYTGYPIANDALYLTKEASGRSVQKTTADRAAAIS 320
Query: 337 HHSPP-PVSSDKS----ESSSEDFSIDPMCTNCPNLAPKG 371
SP V D + E+ SEDF IDPMCTNCPNLAPKG
Sbjct: 321 FCSPARDVQEDCANACKENWSEDFGIDPMCTNCPNLAPKG 360
>gi|297734463|emb|CBI15710.3| unnamed protein product [Vitis vinifera]
Length = 374
Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/344 (79%), Positives = 300/344 (87%), Gaps = 12/344 (3%)
Query: 37 MEIVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYD 96
MEIVWQTPANPP + DYIFR+G+R+V+PYYFEFISHVKNRWAGKTIVDLF EEFKGRPYD
Sbjct: 1 MEIVWQTPANPPERHDYIFRNGKRHVRPYYFEFISHVKNRWAGKTIVDLFTEEFKGRPYD 60
Query: 97 YYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCK 156
YYV+AV+ GRIQVD EMVPVSY V+SSQKISHF+HRHEPPV+A DVS+LQKEPDVLT+CK
Sbjct: 61 YYVNAVQSGRIQVDGEMVPVSYIVRSSQKISHFVHRHEPPVLALDVSVLQKEPDVLTICK 120
Query: 157 PPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
P SVPVHPCGQYRKNTVVGILQAEH LAPLFP+HRLDRLVSGLLILAR+ASKAD FRQQI
Sbjct: 121 PASVPVHPCGQYRKNTVVGILQAEHGLAPLFPIHRLDRLVSGLLILARSASKADSFRQQI 180
Query: 217 EAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFT 276
EAG V K+YIA+V GVFP+ EQVV+VN+NYNA GRST G+ G+TPLKGK+ACTKFT
Sbjct: 181 EAGMVQKQYIAKVTGVFPDDEQVVNVNVNYNAREGRSTV--GNCCGNTPLKGKSACTKFT 238
Query: 277 RISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHR--EGMSADRAAA 334
RISTNGTHSIVLCEPITGRTHQIRVHLQYTG+PIANDMLYL E R +G+SADRAAA
Sbjct: 239 RISTNGTHSIVLCEPITGRTHQIRVHLQYTGHPIANDMLYLSEFSVDRSTKGLSADRAAA 298
Query: 335 YSHHSPPPVSSDKS-------ESSSEDFSIDPMCTNCPNLAPKG 371
S S P SS KS ++S+ DFSIDPMCTNCPNL PKG
Sbjct: 299 NSGCSLPS-SSPKSCVDEYCDDNSTVDFSIDPMCTNCPNLTPKG 341
>gi|357464999|ref|XP_003602781.1| RNA pseudourine synthase [Medicago truncatula]
gi|355491829|gb|AES73032.1| RNA pseudourine synthase [Medicago truncatula]
Length = 380
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 261/342 (76%), Positives = 284/342 (83%), Gaps = 12/342 (3%)
Query: 37 MEIVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYD 96
M+IVWQTPANPP+ +DYI R+G R V+PYYFEFI+HVKNRWAGKTIVDLFAEEFKGRPY+
Sbjct: 12 MDIVWQTPANPPLPQDYIVRNGIRFVRPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYE 71
Query: 97 YYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCK 156
YYVSAVKCGRIQVD EMVPVSY VKSSQKISHFLHRHEPPVMA DV IL KEPDVLTVCK
Sbjct: 72 YYVSAVKCGRIQVDGEMVPVSYVVKSSQKISHFLHRHEPPVMACDVPILHKEPDVLTVCK 131
Query: 157 PPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
P SVPVHPCGQYRKNTVVGILQAEH LAPLFPVHRLDRLVSGLLI+ARNA+KAD FRQ+I
Sbjct: 132 PASVPVHPCGQYRKNTVVGILQAEHGLAPLFPVHRLDRLVSGLLIIARNATKADSFRQEI 191
Query: 217 EAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFT 276
EAG V K+YIA+V G FPE E +VD NI+YNA GRSTAE DS KGK A TKFT
Sbjct: 192 EAGLVKKQYIAKVVGEFPEDEIIVDANIDYNAREGRSTAEVRDS-----TKGKVASTKFT 246
Query: 277 RISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHRE--GMSADRAAA 334
RIS+NGTHSIVLCEP+TGRTHQIRVHLQ +G+PIANDMLY+ E R G +ADR+A
Sbjct: 247 RISSNGTHSIVLCEPVTGRTHQIRVHLQSSGHPIANDMLYISEQTVDRSINGSTADRSAC 306
Query: 335 YSHHS-----PPPVSSDKSESSSEDFSIDPMCTNCPNLAPKG 371
S S V D E+S+EDF IDPMCTNCPNLAPKG
Sbjct: 307 ISDASLTSNFGEKVPKDYQENSNEDFRIDPMCTNCPNLAPKG 348
>gi|356516519|ref|XP_003526941.1| PREDICTED: RNA pseudourine synthase 7-like [Glycine max]
Length = 381
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 259/340 (76%), Positives = 283/340 (83%), Gaps = 12/340 (3%)
Query: 39 IVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYY 98
IVWQTPANPP DY+FR+G R V+PYYFEFI+HVKNRWAGKTIVDLFAEEFKGRPY+YY
Sbjct: 14 IVWQTPANPPHPNDYVFRNGIRYVRPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYEYY 73
Query: 99 VSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPP 158
VSAVKCGRIQVD EMVPVSY VKSSQKISHFLHRHEPPVMA +V +LQK+ DVLTVCKP
Sbjct: 74 VSAVKCGRIQVDGEMVPVSYIVKSSQKISHFLHRHEPPVMACEVPVLQKDIDVLTVCKPA 133
Query: 159 SVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEA 218
SVPVHPCGQYRKNTVVGILQAEH L PLFPVHRLDRLVSGLLILARNA+KAD+FRQQIEA
Sbjct: 134 SVPVHPCGQYRKNTVVGILQAEHGLTPLFPVHRLDRLVSGLLILARNAAKADIFRQQIEA 193
Query: 219 GKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI 278
G V K+YIA+V G FPE E +VD NI+YNA GRSTAE S KGKAA TKFTRI
Sbjct: 194 GLVHKQYIAKVGGEFPEDEVIVDANIDYNAREGRSTAEVRGS-----AKGKAASTKFTRI 248
Query: 279 STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHR--EGMSADRAAAYS 336
STNGT SIVLCEPITGRTHQIRVHLQY+G+PIANDMLY+ E R +G+SADR+A S
Sbjct: 249 STNGTQSIVLCEPITGRTHQIRVHLQYSGHPIANDMLYISEQTVDRSVKGLSADRSARIS 308
Query: 337 HHSPPPVSSDK-----SESSSEDFSIDPMCTNCPNLAPKG 371
S ++K E+S+ DF IDPMCTNCPNLAPKG
Sbjct: 309 GVSLTSNFNEKVLNECEENSNGDFGIDPMCTNCPNLAPKG 348
>gi|297795919|ref|XP_002865844.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297311679|gb|EFH42103.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 392
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 244/372 (65%), Positives = 280/372 (75%), Gaps = 13/372 (3%)
Query: 1 MKRKREEEKSKANDSNSNGNGNGNGNGNGNGNSSNNMEIVWQTPANPPVKEDYIFRDGRR 60
MKRK++E+ +G +++ N +++ Q+P+ K+DYIF GRR
Sbjct: 1 MKRKQQED---------DGVEKAASPVVATTSNTMNTDLLLQSPSKLSQKQDYIFHGGRR 51
Query: 61 NVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTV 120
+V+PYYFEFISHV RW GKTIVDLFA+EFKGRP +YY+ AVK GRI+VD E+VPVSY V
Sbjct: 52 HVRPYYFEFISHVNKRWTGKTIVDLFADEFKGRPREYYIGAVKSGRIKVDGEIVPVSYIV 111
Query: 121 KSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE 180
KSSQKI+HFLHRHEPPVM DV IL +EPDV+TVCKP SVPVHPCGQYRKNTVVGIL AE
Sbjct: 112 KSSQKITHFLHRHEPPVMIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTVVGILDAE 171
Query: 181 HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVV 240
HDL LFP+HRLDRLVSGLLI+AR A+KAD FRQQIE G V KRYIA+V GVFPE E +V
Sbjct: 172 HDLGTLFPIHRLDRLVSGLLIIARTAAKADFFRQQIEGGMVKKRYIAKVIGVFPEDEMIV 231
Query: 241 DVNINYNASAGRSTAESGDSLG-DTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
D NINYN S GRSTAE DS G D +KGK ACTK TRI TNGTHS+V CEP+TGRTHQI
Sbjct: 232 DANINYNGSEGRSTAEDPDSSGDDKKVKGKPACTKLTRIDTNGTHSLVSCEPVTGRTHQI 291
Query: 300 RVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHHSPPPVSSDKSESSSEDFSIDP 359
RVHLQYTG+PIAND LYL +H+ + E A R A VS D SSEDFSIDP
Sbjct: 292 RVHLQYTGHPIANDPLYLNQHIDNLETYIAKRIDAGEKKI---VSPDDYVYSSEDFSIDP 348
Query: 360 MCTNCPNLAPKG 371
MCTNCP L P+G
Sbjct: 349 MCTNCPKLIPQG 360
>gi|218190831|gb|EEC73258.1| hypothetical protein OsI_07380 [Oryza sativa Indica Group]
Length = 393
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/345 (67%), Positives = 272/345 (78%), Gaps = 13/345 (3%)
Query: 39 IVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYY 98
IVWQTPANPP ++DYIFRDGRR V+PYYFEFISHVKNRWAGKTIVDLF +EFKGRP +YY
Sbjct: 8 IVWQTPANPPERQDYIFRDGRRYVRPYYFEFISHVKNRWAGKTIVDLFTDEFKGRPREYY 67
Query: 99 VSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPP 158
V AVKCGR+QVD++MV Y V+SSQKISHFLHRHEPPV+ D++ILQ E DV+TVCKP
Sbjct: 68 VHAVKCGRLQVDDQMVHADYVVQSSQKISHFLHRHEPPVLGGDITILQNEADVVTVCKPA 127
Query: 159 SVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEA 218
SVPVHPCGQYRKNTVVGILQAEH L PLFPVHRLDRLVSGLLI A+NA KA+ FRQQIEA
Sbjct: 128 SVPVHPCGQYRKNTVVGILQAEHGLVPLFPVHRLDRLVSGLLIFAKNADKAESFRQQIEA 187
Query: 219 GKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI 278
+ K Y+A+V GVFP+GEQ V+ N+++NA GRSTAE D G P+ GK ACTKF RI
Sbjct: 188 SLLQKEYVAKVVGVFPDGEQTVNANVHFNAREGRSTAEVCDGDGKAPI-GKQACTKFQRI 246
Query: 279 STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHR--EGMSADRAAAYS 336
T+G HSIVLC+P+TGRTHQIRVHL++ GYPIAND +YL E+ + R +G +RA +
Sbjct: 247 CTDGIHSIVLCKPVTGRTHQIRVHLKHIGYPIANDEVYLSENFSPRSSKGTRINRATTLA 306
Query: 337 HHSP---PPVSSD-------KSESSSEDFSIDPMCTNCPNLAPKG 371
P P +D K + E+FSIDPMCTNCPNLAP G
Sbjct: 307 CSLPSSDPDSCADLGNNDTNKDTEADEEFSIDPMCTNCPNLAPVG 351
>gi|334188313|ref|NP_001190513.1| RNA pseudourine synthase 7 [Arabidopsis thaliana]
gi|332008660|gb|AED96043.1| RNA pseudourine synthase 7 [Arabidopsis thaliana]
Length = 410
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/372 (65%), Positives = 281/372 (75%), Gaps = 10/372 (2%)
Query: 1 MKRKREEEKSKANDSNSNGNGNGNGNGNGNGNSSNNMEIVWQTPANPPVKEDYIFRDGRR 60
MKRK++E D N +G +++ + +++ Q+ + K+DYIF GRR
Sbjct: 1 MKRKQQE------DDNDDGVEKAVSPVLATTSNTMSTDLLLQSSSKLSQKQDYIFHGGRR 54
Query: 61 NVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTV 120
+V+PYYFEFISHV RW GKTIVDLFA+EFKGRP DYYV AVK GRI+VD E+VPVSY V
Sbjct: 55 HVRPYYFEFISHVNKRWTGKTIVDLFADEFKGRPRDYYVGAVKSGRIKVDGEIVPVSYIV 114
Query: 121 KSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE 180
KSSQKI+HFLHRHEPPVM DV IL +EPDV+TVCKP SVPVHPCGQYRKNT+VGIL AE
Sbjct: 115 KSSQKITHFLHRHEPPVMIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTIVGILDAE 174
Query: 181 HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVV 240
HDL LFP+HRLDRLVSGLLI+AR A+KAD FRQQIE G V KRYIA+V GVFPE E +V
Sbjct: 175 HDLGTLFPIHRLDRLVSGLLIIARTAAKADFFRQQIEGGMVKKRYIAKVIGVFPEDEMIV 234
Query: 241 DVNINYNASAGRSTAESGDSLG-DTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
D NINYN S GRSTAE +S G D +KGK ACTKFTRI TNGTHS+V CEP+TGRTHQI
Sbjct: 235 DANINYNGSEGRSTAEDANSSGDDKKVKGKPACTKFTRIDTNGTHSLVSCEPVTGRTHQI 294
Query: 300 RVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHHSPPPVSSDKSESSSEDFSIDP 359
RVHLQYTG+PIAND LYL +H+ + E A R A VS D SSEDFSIDP
Sbjct: 295 RVHLQYTGHPIANDPLYLNQHIDNLETYIAKRIDAGERKI---VSPDDYVYSSEDFSIDP 351
Query: 360 MCTNCPNLAPKG 371
MCTNCP L P+G
Sbjct: 352 MCTNCPKLIPQG 363
>gi|226724697|sp|Q0E0Y3.2|PUS7_ORYSJ RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA
pseudouridylate synthase 7; AltName: Full=RNA-uridine
isomerase 7
gi|222622934|gb|EEE57066.1| hypothetical protein OsJ_06883 [Oryza sativa Japonica Group]
Length = 393
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/345 (67%), Positives = 272/345 (78%), Gaps = 13/345 (3%)
Query: 39 IVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYY 98
IVWQTPANPP ++DYIFRDGRR V+PYYFEFISHVKNRWAGKTIVDLF +EFKGRP +YY
Sbjct: 8 IVWQTPANPPERQDYIFRDGRRYVRPYYFEFISHVKNRWAGKTIVDLFTDEFKGRPREYY 67
Query: 99 VSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPP 158
V AVKCGR+QVD++MV Y V+SSQKISHFLHRHEPPV+ D++ILQ E DV+TVCKP
Sbjct: 68 VHAVKCGRLQVDDQMVHADYVVQSSQKISHFLHRHEPPVLGGDITILQNEADVVTVCKPA 127
Query: 159 SVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEA 218
SVPVHPCGQYRKNTVVGILQAEH L PLFPVHRLDRLVSGLLI A+NA KA+ FRQQIEA
Sbjct: 128 SVPVHPCGQYRKNTVVGILQAEHGLVPLFPVHRLDRLVSGLLIFAKNADKAESFRQQIEA 187
Query: 219 GKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI 278
+ K Y+A+V GVFP+GEQ V+ N+++NA GRSTAE D G P+ GK ACTKF RI
Sbjct: 188 SLLQKEYVAKVVGVFPDGEQTVNANVHFNAREGRSTAEVCDGDGKAPI-GKQACTKFQRI 246
Query: 279 STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHR--EGMSADRAAAYS 336
T+G HSIVLC+P+TGRTHQIRVHL++ GYPIAND +YL E+ + R +G +RA +
Sbjct: 247 CTDGIHSIVLCKPVTGRTHQIRVHLKHIGYPIANDEVYLSENFSPRSSKGTRINRATTLA 306
Query: 337 HHSP---PPVSSD-------KSESSSEDFSIDPMCTNCPNLAPKG 371
P P +D + + E+FSIDPMCTNCPNLAP G
Sbjct: 307 CSLPSSDPDSCADLGNNDTNEDTEADEEFSIDPMCTNCPNLAPVG 351
>gi|15241389|ref|NP_199927.1| RNA pseudourine synthase 7 [Arabidopsis thaliana]
gi|75264240|sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA
pseudouridylate synthase 7; AltName: Full=RNA-uridine
isomerase 7
gi|8843850|dbj|BAA97376.1| unnamed protein product [Arabidopsis thaliana]
gi|332008659|gb|AED96042.1| RNA pseudourine synthase 7 [Arabidopsis thaliana]
Length = 395
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/372 (65%), Positives = 281/372 (75%), Gaps = 10/372 (2%)
Query: 1 MKRKREEEKSKANDSNSNGNGNGNGNGNGNGNSSNNMEIVWQTPANPPVKEDYIFRDGRR 60
MKRK++E D N +G +++ + +++ Q+ + K+DYIF GRR
Sbjct: 1 MKRKQQE------DDNDDGVEKAVSPVLATTSNTMSTDLLLQSSSKLSQKQDYIFHGGRR 54
Query: 61 NVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTV 120
+V+PYYFEFISHV RW GKTIVDLFA+EFKGRP DYYV AVK GRI+VD E+VPVSY V
Sbjct: 55 HVRPYYFEFISHVNKRWTGKTIVDLFADEFKGRPRDYYVGAVKSGRIKVDGEIVPVSYIV 114
Query: 121 KSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE 180
KSSQKI+HFLHRHEPPVM DV IL +EPDV+TVCKP SVPVHPCGQYRKNT+VGIL AE
Sbjct: 115 KSSQKITHFLHRHEPPVMIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTIVGILDAE 174
Query: 181 HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVV 240
HDL LFP+HRLDRLVSGLLI+AR A+KAD FRQQIE G V KRYIA+V GVFPE E +V
Sbjct: 175 HDLGTLFPIHRLDRLVSGLLIIARTAAKADFFRQQIEGGMVKKRYIAKVIGVFPEDEMIV 234
Query: 241 DVNINYNASAGRSTAESGDSLG-DTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
D NINYN S GRSTAE +S G D +KGK ACTKFTRI TNGTHS+V CEP+TGRTHQI
Sbjct: 235 DANINYNGSEGRSTAEDANSSGDDKKVKGKPACTKFTRIDTNGTHSLVSCEPVTGRTHQI 294
Query: 300 RVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHHSPPPVSSDKSESSSEDFSIDP 359
RVHLQYTG+PIAND LYL +H+ + E A R A VS D SSEDFSIDP
Sbjct: 295 RVHLQYTGHPIANDPLYLNQHIDNLETYIAKRIDAGERKI---VSPDDYVYSSEDFSIDP 351
Query: 360 MCTNCPNLAPKG 371
MCTNCP L P+G
Sbjct: 352 MCTNCPKLIPQG 363
>gi|21536736|gb|AAM61068.1| unknown [Arabidopsis thaliana]
Length = 395
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 244/372 (65%), Positives = 280/372 (75%), Gaps = 10/372 (2%)
Query: 1 MKRKREEEKSKANDSNSNGNGNGNGNGNGNGNSSNNMEIVWQTPANPPVKEDYIFRDGRR 60
MKRK++E D N +G +++ + +++ Q+ + K+DYIF GRR
Sbjct: 1 MKRKQQE------DDNDDGVEKAVSPVLATTSNTMSTDLLLQSSSKLSQKQDYIFHGGRR 54
Query: 61 NVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTV 120
+V+PYYFEFISHV RW GKTIVDLFA+EFKGRP DYYV AVK GRI+VD E+VPVSY V
Sbjct: 55 HVRPYYFEFISHVNKRWTGKTIVDLFADEFKGRPRDYYVGAVKSGRIKVDGEIVPVSYIV 114
Query: 121 KSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE 180
KSSQKI+HFLHRHEPPVM DV IL +EPDV+TVCKP SVPVHPCGQYRKNT+VGIL AE
Sbjct: 115 KSSQKITHFLHRHEPPVMIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTIVGILDAE 174
Query: 181 HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVV 240
HDL LF +HRLDRLVSGLLI+AR A+KAD FRQQIE G V KRYIA+V GVFPE E +V
Sbjct: 175 HDLGTLFSIHRLDRLVSGLLIIARTAAKADFFRQQIEGGMVKKRYIAKVIGVFPEDEMIV 234
Query: 241 DVNINYNASAGRSTAESGDSLG-DTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
D NINYN S GRSTAE +S G D +KGK ACTKFTRI TNGTHS+V CEP+TGRTHQI
Sbjct: 235 DANINYNGSEGRSTAEDANSSGDDKKVKGKPACTKFTRIDTNGTHSLVSCEPVTGRTHQI 294
Query: 300 RVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHHSPPPVSSDKSESSSEDFSIDP 359
RVHLQYTG+PIAND LYL +H+ + E A R A VS D SSEDFSIDP
Sbjct: 295 RVHLQYTGHPIANDPLYLNQHIDNLETYIAKRIDAGERKI---VSPDDYVYSSEDFSIDP 351
Query: 360 MCTNCPNLAPKG 371
MCTNCP L P+G
Sbjct: 352 MCTNCPKLIPQG 363
>gi|16974566|gb|AAL31256.1| AT5g51140/MWD22_8 [Arabidopsis thaliana]
gi|23507777|gb|AAN38692.1| At5g51140/MWD22_8 [Arabidopsis thaliana]
Length = 367
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/321 (73%), Positives = 258/321 (80%), Gaps = 4/321 (1%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
DYIF GRR+V+PYYFEFISHV RW GKTIVDLFA+EFKGRP DYYV AVK GRI+VD
Sbjct: 18 DYIFHGGRRHVRPYYFEFISHVNKRWTGKTIVDLFADEFKGRPRDYYVGAVKSGRIKVDG 77
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
E+VPVSY VKSSQKI+HFLHRHEPPVM DV IL +EPDV+TVCKP SVPVHPCGQYRKN
Sbjct: 78 EIVPVSYIVKSSQKITHFLHRHEPPVMIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKN 137
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
T+VGIL AEHDL LFP+HRLDRLVSGLLI+AR A+KAD FRQQIE G V KRYIA+V G
Sbjct: 138 TIVGILDAEHDLGTLFPIHRLDRLVSGLLIIARTAAKADFFRQQIEGGMVKKRYIAKVIG 197
Query: 232 VFPEGEQVVDVNINYNASAGRSTAESGDSLG-DTPLKGKAACTKFTRISTNGTHSIVLCE 290
VFPE E +VD NINYN S GRSTAE +S G D +KGK ACTKFTRI TNGTHS+V CE
Sbjct: 198 VFPEDEMIVDANINYNGSEGRSTAEDANSSGDDKKVKGKPACTKFTRIDTNGTHSLVSCE 257
Query: 291 PITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHHSPPPVSSDKSES 350
P+TGRTHQIRVHLQYTG+PIAND LYL +H+ + E A R A VS D
Sbjct: 258 PVTGRTHQIRVHLQYTGHPIANDPLYLNQHIDNLETYIAKRIDAGERKI---VSPDDYVY 314
Query: 351 SSEDFSIDPMCTNCPNLAPKG 371
SSEDFSIDPMCTNCP L P+G
Sbjct: 315 SSEDFSIDPMCTNCPKLIPQG 335
>gi|357149176|ref|XP_003575026.1| PREDICTED: RNA pseudourine synthase 7-like [Brachypodium
distachyon]
Length = 384
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/335 (68%), Positives = 264/335 (78%), Gaps = 4/335 (1%)
Query: 39 IVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYY 98
IVWQTPANPP +DYIFR+GRR V+PYYFEFISHVKNRWAGKTIVDLF EEFKGRPY+YY
Sbjct: 10 IVWQTPANPPEAQDYIFRNGRRYVRPYYFEFISHVKNRWAGKTIVDLFTEEFKGRPYEYY 69
Query: 99 VSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPP 158
V AVKCGR+QVDE+ VP Y VKSSQKISHFLHRHEPPV+ ++ ILQ E DV+TVCKP
Sbjct: 70 VHAVKCGRLQVDEQTVPADYIVKSSQKISHFLHRHEPPVLGGNILILQNEVDVVTVCKPA 129
Query: 159 SVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEA 218
SVPVHPCGQYRKNTVVGILQAEH L PLFPVHRLDRLVSGLLI A++A +A+ FRQQIEA
Sbjct: 130 SVPVHPCGQYRKNTVVGILQAEHGLTPLFPVHRLDRLVSGLLIFAKSADRAECFRQQIEA 189
Query: 219 GKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI 278
+ K Y+A+V GVFP+GEQ VD N+N+NA GRST E D G GK ACTKF RI
Sbjct: 190 NLLQKEYVAKVVGVFPDGEQTVDANVNFNAREGRSTVEVCDGPGKALPSGKQACTKFQRI 249
Query: 279 STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHR--EGMSADRAAAYS 336
T+G HSIVLC+P+TGRTHQIRVHL++ GYPIAND LYL + R +G +RA + +
Sbjct: 250 FTDGNHSIVLCKPVTGRTHQIRVHLKHIGYPIANDELYLSGNFCPRSSKGTGINRATSLA 309
Query: 337 HHSPPPVSSDKSESSSEDFSIDPMCTNCPNLAPKG 371
P +E +E+F IDPMCTNCPNLAP G
Sbjct: 310 CSLSSPDPDSSAE--AEEFGIDPMCTNCPNLAPVG 342
>gi|326508344|dbj|BAJ99439.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 394
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/335 (68%), Positives = 261/335 (77%), Gaps = 3/335 (0%)
Query: 39 IVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYY 98
IVWQTPANPP +DYIFR+GRR V+PYYFEFISH KNRWAGKTIVDLF +EFKGRP +YY
Sbjct: 10 IVWQTPANPPEAQDYIFRNGRRYVRPYYFEFISHAKNRWAGKTIVDLFTDEFKGRPREYY 69
Query: 99 VSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPP 158
V AVKCGR+QVDE+MV Y VKSSQKISHFLHRHEPPV+ ++ ILQ E DV+TVCKP
Sbjct: 70 VHAVKCGRLQVDEQMVQADYIVKSSQKISHFLHRHEPPVLGGNIVILQNEVDVVTVCKPA 129
Query: 159 SVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEA 218
SVPVHPCGQYRKNTVVGI++AEH L PLFPVHRLDRLVSGLLI A++A +A+ FRQQIEA
Sbjct: 130 SVPVHPCGQYRKNTVVGIMEAEHGLTPLFPVHRLDRLVSGLLIFAKSAERAERFRQQIEA 189
Query: 219 GKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI 278
+ K Y+A+V GVFPEGEQ VD N+N+NA GRST E + G GK ACTKF RI
Sbjct: 190 NLLQKEYVAKVVGVFPEGEQTVDANVNFNAREGRSTVEVSNGPGKAIPSGKQACTKFQRI 249
Query: 279 STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHR--EGMSADRAAAYS 336
T+G HSIVLC+P+TGRTHQIRVHL++ GYPIAND LY+ + R +G S RA +
Sbjct: 250 CTDGNHSIVLCKPVTGRTHQIRVHLKHLGYPIANDELYVSGNFCPRSSKGTSIHRATSLV 309
Query: 337 HHSPPPVSSDKSESSSEDFSIDPMCTNCPNLAPKG 371
P P D S + DF IDPMCTNCPNLAP G
Sbjct: 310 CSLPSP-DPDNSAEADLDFGIDPMCTNCPNLAPVG 343
>gi|219363655|ref|NP_001136977.1| uncharacterized protein LOC100217137 [Zea mays]
gi|194697832|gb|ACF83000.1| unknown [Zea mays]
gi|413937019|gb|AFW71570.1| hypothetical protein ZEAMMB73_885155 [Zea mays]
Length = 386
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/336 (67%), Positives = 259/336 (77%), Gaps = 4/336 (1%)
Query: 39 IVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYY 98
IVWQTPANPP DYI R+GRR V+PYYFEFISHVKNRWAGKTIVDLF +EFKGR DYY
Sbjct: 10 IVWQTPANPPESHDYIIRNGRRYVRPYYFEFISHVKNRWAGKTIVDLFTDEFKGRSRDYY 69
Query: 99 VSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPP 158
V AVKCGR+QVD +MV Y VKSSQKISHFLHRHEPPV+A D+SIL+ E DV+T+CKP
Sbjct: 70 VHAVKCGRLQVDGQMVHTDYIVKSSQKISHFLHRHEPPVLAGDISILKNEVDVVTICKPA 129
Query: 159 SVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEA 218
SVPVHPCGQYRKNTVVGILQAEH L PLFPVHRLDRLVSGLLI A+NA +A+ FRQQIEA
Sbjct: 130 SVPVHPCGQYRKNTVVGILQAEHGLTPLFPVHRLDRLVSGLLIFAKNADRAECFRQQIEA 189
Query: 219 GKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI 278
G + K Y+A+V GVFP+GEQ VD N+N+NA GRST E G+ P GK A T+F RI
Sbjct: 190 GLLQKEYVAKVVGVFPDGEQTVDANVNFNAREGRSTVEISGGAGEEP-NGKQALTRFQRI 248
Query: 279 STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHH 338
T+GTHSIVLC+P+TGRTHQIRVHL+ GYPIAND LYL + R + + +
Sbjct: 249 CTDGTHSIVLCKPVTGRTHQIRVHLKQAGYPIANDELYLSGNFCPRSTKGTNASKKIAPS 308
Query: 339 SPPPVSSD---KSESSSEDFSIDPMCTNCPNLAPKG 371
P ++D K + +F IDPMCTNCPNLAP G
Sbjct: 309 DPDSSAADHGSKDAGTDVEFDIDPMCTNCPNLAPVG 344
>gi|168018525|ref|XP_001761796.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686851|gb|EDQ73237.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 346
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/319 (57%), Positives = 235/319 (73%), Gaps = 9/319 (2%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G R V+PY+FEF++HVK RW GKT+VDLFA+EF+ RP +YY AVK GRI+V+ ++V S
Sbjct: 1 GTRMVRPYFFEFLAHVKKRWEGKTVVDLFAQEFRQRPREYYEEAVKRGRIRVEGKVVAPS 60
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGIL 177
Y V+ SQ +SHF+HRHEPPV+A V +L++ PD++ V KP +VPVHPCGQYRKN+V+ IL
Sbjct: 61 YVVRDSQTMSHFVHRHEPPVLAGRVIVLEEGPDIIVVSKPATVPVHPCGQYRKNSVISIL 120
Query: 178 QAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237
+AEH PLFPVHRLDRLVSGLLILARN+ AD FRQ+IEAG V K+Y+A+V GVFP E
Sbjct: 121 EAEHKTGPLFPVHRLDRLVSGLLILARNSRTADFFRQEIEAGVVQKQYVAKVKGVFPAEE 180
Query: 238 QVVDVNINYNASAGRSTAESGDSLGDTP---LKGKAACTKFTRISTNGTHSIVLCEPITG 294
++ + Y+ GRS+ E ++L TP K K +CTKF R+ST+G SIV C P+TG
Sbjct: 181 VELNAAVIYDPREGRSSVEVQNNLEVTPESDAKSKESCTKFRRLSTDGVDSIVQCMPLTG 240
Query: 295 RTHQIRVHLQYTGYPIANDMLYLCEHVTHRE--GMSADRAAAYSHHSPPPVSSDKSESSS 352
RTHQIRVHLQY G+PIAND LYL +VT R +ADRAA P S S+S +
Sbjct: 241 RTHQIRVHLQYLGFPIANDDLYLHSNVTKRSKANTTADRAAKI----PEERSQFVSKSIN 296
Query: 353 EDFSIDPMCTNCPNLAPKG 371
+F +DP+CT+CPN+AP G
Sbjct: 297 PNFMVDPLCTHCPNMAPTG 315
>gi|388518693|gb|AFK47408.1| unknown [Medicago truncatula]
Length = 268
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 172/241 (71%), Positives = 189/241 (78%), Gaps = 12/241 (4%)
Query: 138 MAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVS 197
MA DV IL KEPDVLTVCKP SVPVHPCGQYRKNTVVGILQAEH LAPLFPVHRLDRLVS
Sbjct: 1 MACDVPILHKEPDVLTVCKPASVPVHPCGQYRKNTVVGILQAEHGLAPLFPVHRLDRLVS 60
Query: 198 GLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAES 257
GLLI+ARNA+KAD FRQ+IEAG V K+YIA+V G FPE E +VD +I+YNA GRSTAE
Sbjct: 61 GLLIIARNATKADSFRQEIEAGLVKKQYIAKVVGEFPEDEIIVDAHIDYNAREGRSTAEV 120
Query: 258 GDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYL 317
DS KGK A TKFTRIS+NGTHSIVLCEP+TGRTHQIRVHLQ +G+PIANDMLY+
Sbjct: 121 RDS-----TKGKVASTKFTRISSNGTHSIVLCEPVTGRTHQIRVHLQSSGHPIANDMLYI 175
Query: 318 CEHVTHRE--GMSADRAAAYSHHS-----PPPVSSDKSESSSEDFSIDPMCTNCPNLAPK 370
E R G +ADR+A S S V D E+S+EDF IDPMCTNCPNLAPK
Sbjct: 176 SEQTVDRSINGSTADRSACISDASLTSNFGEKVPKDYQENSNEDFRIDPMCTNCPNLAPK 235
Query: 371 G 371
G
Sbjct: 236 G 236
>gi|294460586|gb|ADE75868.1| unknown [Picea sitchensis]
Length = 422
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 141/305 (46%), Positives = 184/305 (60%), Gaps = 60/305 (19%)
Query: 37 MEIVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYD 96
+EIVW+TP NPP EDYIF DG+R V+PYYFEFI+HVK RWAGK +VD+F+ EF+ RP++
Sbjct: 19 IEIVWETPLNPPKPEDYIFYDGKRMVRPYYFEFIAHVKKRWAGKKVVDVFSHEFRQRPHE 78
Query: 97 YYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCK 156
YYV AVK GRI+VD ++V + Y V+ +K+SHF+HRHEPPVMA V IL++ DV+TVCK
Sbjct: 79 YYVEAVKSGRIRVDGKLVAIGYVVRDGEKLSHFVHRHEPPVMAEPVVILEEGCDVVTVCK 138
Query: 157 PPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
P SVP+ G +Q E+
Sbjct: 139 PASVPIE----------AGKVQKEY----------------------------------- 153
Query: 217 EAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFT 276
+A+V G+FP E VD N+ Y+A GRST + G+ + P+ GK ACT+FT
Sbjct: 154 ---------VAKVKGIFPTEEVEVDANVAYDAREGRSTTQVGNGDKEQPINGKTACTRFT 204
Query: 277 RISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVT----HREGMSADRA 332
R++T+G S+V C P+TGRTHQIRVHLQ+ G+ IAND LY H R+ SAD A
Sbjct: 205 RLATDGVFSVVKCLPLTGRTHQIRVHLQHLGHSIANDALY--SHANPPSRTRKETSADLA 262
Query: 333 AAYSH 337
A S
Sbjct: 263 AKVSQ 267
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 343 VSSDKSESSSEDFSIDPMCTNCPNLAPKG 371
++ D SE DFS+DPMCTNCPN+AP G
Sbjct: 362 LNKDHSEKLELDFSMDPMCTNCPNVAPSG 390
>gi|387169515|gb|AFJ66176.1| hypothetical protein 11M19.21 [Arabidopsis halleri]
Length = 308
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 170/374 (45%), Positives = 208/374 (55%), Gaps = 69/374 (18%)
Query: 1 MKRKREEEKSKANDSNSNGNGNGNGNGNGNGNSSNNMEIVWQTPANPPVKEDYIFRDGRR 60
MKRK++E D N +G ++ N +++ Q+P+ K+DYIF GRR
Sbjct: 1 MKRKQQE------DDNDDGVEKAVSPVVATTPNTMNTDLLLQSPSKLSQKQDYIFHGGRR 54
Query: 61 NVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTV 120
+V+PYYFEFISHV AVK GRI+VD E+VPVSY V
Sbjct: 55 HVRPYYFEFISHV--------------------------GAVKSGRIKVDGEIVPVSYIV 88
Query: 121 KSSQKISHFLHR--HEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQ 178
KSSQKI+HFLHR H +++ +++ V P V + V IL
Sbjct: 89 KSSQKITHFLHRWLHLLFEISFALNVYTNSKCVKGFRHEPPVMIDD---------VVILH 139
Query: 179 AEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQ 238
E D+ + + + AS IE G V KRYIA+V GVFPE E
Sbjct: 140 QEPDV----------------VTVCKPASVP------IEGGMVKKRYIAKVIGVFPEDEM 177
Query: 239 VVDVNINYNASAGRSTAESGDSLGD-TPLKGKAACTKFTRISTNGTHSIVLCEPITGRTH 297
+VD NINYN S GRSTAE +S GD +KGK ACTKFTRI TNGTHS+V CEP+TGRTH
Sbjct: 178 IVDANINYNGSEGRSTAEDVNSSGDDKKVKGKPACTKFTRIDTNGTHSLVSCEPVTGRTH 237
Query: 298 QIRVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHHSPPPVSSDKSESSSEDFSI 357
QIRVHLQYTG+PIAND LYL +H+ + E A R A VS D SSEDFSI
Sbjct: 238 QIRVHLQYTGHPIANDPLYLNQHIDNLETYIAKRIDAGERKI---VSPDDYVYSSEDFSI 294
Query: 358 DPMCTNCPNLAPKG 371
DPMCTNCP L P+G
Sbjct: 295 DPMCTNCPKLIPQG 308
>gi|28316862|gb|AAO39454.1| RH45372p [Drosophila melanogaster]
Length = 739
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 170/282 (60%), Gaps = 16/282 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+D+F+ EF+ P + Y ++ G + V+ E
Sbjct: 288 YYMENGLRKVYPYYFTFTTFTKGRWVGEKILDIFSREFRAHPTEEYERCIQTGTLTVNFE 347
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP+ Y +K + +++ +HRHE PV + I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 348 KVPIDYRLKHNDLLANIVHRHEVPVTCQPIKIVHMDEDIVVVNKPASIPVHPCGRYRHNT 407
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E +L L +HRLDRL SGLL+ R+ KA QQI +V K YI RV GV
Sbjct: 408 VVFILAKEFNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEGV 467
Query: 233 FPEG----EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+G ++ ++V ++Y + +A KGK T F ++S NGT S+VL
Sbjct: 468 FPDGIVECKEPIEV-VSYKIGVCKVSA-----------KGKDCTTTFQKLSQNGTTSVVL 515
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSAD 330
C+P+TGR HQIRVHLQY GYPI ND LY E +G S D
Sbjct: 516 CKPLTGRMHQIRVHLQYLGYPILNDPLYNHEVFGPLKGRSGD 557
>gi|24583445|ref|NP_723592.1| RluA-1, isoform A [Drosophila melanogaster]
gi|24583447|ref|NP_723593.1| RluA-1, isoform B [Drosophila melanogaster]
gi|24583449|ref|NP_723594.1| RluA-1, isoform C [Drosophila melanogaster]
gi|22946167|gb|AAF52959.2| RluA-1, isoform A [Drosophila melanogaster]
gi|22946168|gb|AAF52960.2| RluA-1, isoform B [Drosophila melanogaster]
gi|22946169|gb|AAN10755.1| RluA-1, isoform C [Drosophila melanogaster]
gi|206725570|gb|ACI16540.1| FI04540p [Drosophila melanogaster]
Length = 739
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 170/282 (60%), Gaps = 16/282 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+D+F+ EF+ P + Y ++ G + V+ E
Sbjct: 288 YYMENGLRKVYPYYFTFTTFTKGRWVGEKILDIFSREFRAHPAEEYERCIQTGTLTVNFE 347
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP+ Y +K + +++ +HRHE PV + I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 348 KVPIDYRLKHNDLLANIVHRHEVPVTCQPIKIVHMDEDIVVVNKPASIPVHPCGRYRHNT 407
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E +L L +HRLDRL SGLL+ R+ KA QQI +V K YI RV GV
Sbjct: 408 VVFILAKEFNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEGV 467
Query: 233 FPEG----EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+G ++ ++V ++Y + +A KGK T F ++S NGT S+VL
Sbjct: 468 FPDGIVECKEPIEV-VSYKIGVCKVSA-----------KGKDCTTTFQKLSQNGTTSVVL 515
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSAD 330
C+P+TGR HQIRVHLQY GYPI ND LY E +G S D
Sbjct: 516 CKPLTGRMHQIRVHLQYLGYPILNDPLYNHEVFGPLKGRSGD 557
>gi|195471884|ref|XP_002088232.1| GE13593 [Drosophila yakuba]
gi|194174333|gb|EDW87944.1| GE13593 [Drosophila yakuba]
Length = 738
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 122/282 (43%), Positives = 171/282 (60%), Gaps = 16/282 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+D+F+ EF+ P + Y ++ G + V+ E
Sbjct: 287 YFMENGLRKVYPYYFTFTTFTKGRWVGEKILDIFSREFRAHPAEEYERCIQTGTLTVNFE 346
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP+ Y +K + +++ +HRHE PV + I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 347 KVPIDYRLKHNDLLANIVHRHEVPVTCQPIKIVHMDEDIVVVNKPASIPVHPCGRYRHNT 406
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E +L L +HRLDRL SGLL+ R+ KA QQI +V K YI RV GV
Sbjct: 407 VVFILAKEFNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEGV 466
Query: 233 FPEG----EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+G ++ ++V ++Y + ++ KGK T F ++S NG+ S+VL
Sbjct: 467 FPDGIVECKEPIEV-VSYKIGVCKVSS-----------KGKDCTTTFQKLSQNGSTSVVL 514
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSAD 330
C+P+TGR HQIRVHLQY GYPI ND LY E ++G S D
Sbjct: 515 CKPLTGRMHQIRVHLQYLGYPILNDPLYNHEVFGPQKGRSGD 556
>gi|194761916|ref|XP_001963137.1| GF14093 [Drosophila ananassae]
gi|190616834|gb|EDV32358.1| GF14093 [Drosophila ananassae]
Length = 755
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 123/282 (43%), Positives = 169/282 (59%), Gaps = 16/282 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+D+F+ EF+ P + Y ++ G + V+ E
Sbjct: 306 YYMENGLRKVYPYYFTFTTFTKGRWVGEKILDIFSREFRAHPAEEYERCIQTGTLTVNFE 365
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP+ Y +K + +++ +HRHE PV + I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 366 KVPIDYRLKHNDLLANIVHRHEVPVTCQPIKIVHMDEDIVVVNKPASIPVHPCGRYRHNT 425
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E +L L +HRLDRL SGLL+ R+ KA QQI +V K YI RV GV
Sbjct: 426 VVFILAKEFNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEGV 485
Query: 233 FPEG----EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+G ++ ++V ++Y + + KGK T F ++S NGT S+VL
Sbjct: 486 FPDGVVECKEPIEV-VSYKIGVCKVSP-----------KGKDCTTTFQKLSQNGTTSVVL 533
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSAD 330
C+P+TGR HQIRVHLQY GYPI ND LY E +G S D
Sbjct: 534 CKPLTGRMHQIRVHLQYLGYPILNDPLYNHEVFGPLKGRSGD 575
>gi|195339845|ref|XP_002036527.1| GM11650 [Drosophila sechellia]
gi|194130407|gb|EDW52450.1| GM11650 [Drosophila sechellia]
Length = 739
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 123/282 (43%), Positives = 169/282 (59%), Gaps = 16/282 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+D+F+ EF+ P + Y ++ G + V+ E
Sbjct: 287 YYMENGLRKVYPYYFTFTTFTKGRWVGEKILDIFSREFRAHPAEEYERCIQTGTLTVNFE 346
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP+ Y +K + +++ +HRHE PV + I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 347 KVPIDYRLKHNDLLANIVHRHEVPVTCQPIKIVHMDEDIVVVNKPASIPVHPCGRYRHNT 406
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E +L L +HRLDRL SGLL+ R+ KA QQI +V K YI RV GV
Sbjct: 407 VVFILAKEFNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEGV 466
Query: 233 FPEG----EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+G ++ ++V ++Y + + KGK T F ++S NGT S+VL
Sbjct: 467 FPDGIVECKEPIEV-VSYKIGVCKVSP-----------KGKDCTTTFQKLSQNGTTSVVL 514
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSAD 330
C+P+TGR HQIRVHLQY GYPI ND LY E +G S D
Sbjct: 515 CKPLTGRMHQIRVHLQYLGYPILNDPLYNHEVFGPLKGRSGD 556
>gi|195578233|ref|XP_002078970.1| GD22253 [Drosophila simulans]
gi|194190979|gb|EDX04555.1| GD22253 [Drosophila simulans]
Length = 555
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 123/282 (43%), Positives = 169/282 (59%), Gaps = 16/282 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+D+F+ EF+ P + Y ++ G + V+ E
Sbjct: 103 YYMENGLRKVYPYYFTFTTFTKGRWVGEKILDIFSREFRAHPAEEYERCIQTGTLTVNFE 162
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP+ Y +K + +++ +HRHE PV + I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 163 KVPIDYRLKHNDLLANIVHRHEVPVTCQPIKIVHMDEDIVVVNKPASIPVHPCGRYRHNT 222
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E +L L +HRLDRL SGLL+ R+ KA QQI +V K YI RV GV
Sbjct: 223 VVFILAKEFNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEGV 282
Query: 233 FPEG----EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+G ++ ++V ++Y + + KGK T F ++S NGT S+VL
Sbjct: 283 FPDGIVECKEPIEV-VSYKIGVCKVSP-----------KGKDCTTTFQKLSQNGTTSVVL 330
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSAD 330
C+P+TGR HQIRVHLQY GYPI ND LY E +G S D
Sbjct: 331 CKPLTGRMHQIRVHLQYLGYPILNDPLYNHEVFGPLKGRSGD 372
>gi|194862300|ref|XP_001969970.1| GG10383 [Drosophila erecta]
gi|190661837|gb|EDV59029.1| GG10383 [Drosophila erecta]
Length = 721
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/282 (43%), Positives = 170/282 (60%), Gaps = 16/282 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y + R V PYYF F + K RW G+ I+D+F+ EF+ P + Y ++ G + V+ E
Sbjct: 270 YYMENALRKVYPYYFTFTTFTKGRWVGEKILDIFSREFRAHPAEEYERCIQTGTLTVNFE 329
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP+ Y +K + +++ +HRHE PV + + I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 330 KVPIDYRLKHNDLLANIVHRHEVPVTSQPIKIVHMDEDIVVVNKPASIPVHPCGRYRHNT 389
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E +L L +HRLDRL SGLL+ R+ KA QQI +V K YI RV GV
Sbjct: 390 VVFILAKEFNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEGV 449
Query: 233 FPEG----EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+G ++ ++V ++Y + ++ KGK T F ++S NGT S+VL
Sbjct: 450 FPDGIVECKEPIEV-VSYKIGVCKVSS-----------KGKDCTTTFQKLSQNGTTSVVL 497
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSAD 330
C+P+TGR HQIRVHLQY GYPI ND LY E +G S D
Sbjct: 498 CKPLTGRMHQIRVHLQYLGYPILNDPLYNHEVFGPLKGRSGD 539
>gi|195051256|ref|XP_001993061.1| GH13618 [Drosophila grimshawi]
gi|193900120|gb|EDV98986.1| GH13618 [Drosophila grimshawi]
Length = 753
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 122/282 (43%), Positives = 170/282 (60%), Gaps = 16/282 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+D+F++EF+ P + Y ++ G + V+ E
Sbjct: 307 YYTENGLRKVYPYYFTFTTFTKGRWVGEKILDIFSKEFRAHPAEEYERCIQTGTLTVNFE 366
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP+ Y +K + +++ +HRHE PV ++I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 367 KVPIDYRLKHNDLLANIVHRHEVPVTCQPITIVHMDEDIVVVNKPASIPVHPCGRYRHNT 426
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E +L L +HRLDRL SGLL+ R+ KA QQI +V K YI RV GV
Sbjct: 427 VVFILAKEFNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEGV 486
Query: 233 FPEG----EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+G ++ ++V ++Y + + KGK T F ++S NG S+VL
Sbjct: 487 FPDGVVECKEPIEV-VSYKIGVCKVSQ-----------KGKDCTTTFKKLSQNGKTSVVL 534
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSAD 330
C+P+TGR HQIRVHLQY GYPI ND LY E +G S D
Sbjct: 535 CKPLTGRMHQIRVHLQYLGYPILNDPLYNHEVFGPLKGRSGD 576
>gi|195434114|ref|XP_002065048.1| GK15253 [Drosophila willistoni]
gi|194161133|gb|EDW76034.1| GK15253 [Drosophila willistoni]
Length = 761
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 120/282 (42%), Positives = 169/282 (59%), Gaps = 16/282 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+D+F+ EF+ P + Y ++ G + V+ E
Sbjct: 306 YYMENGLRKVYPYYFTFTTFTKGRWVGEKILDIFSREFRAHPAEEYERCIQTGTLTVNFE 365
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP+ Y +K + +++ +HRHE PV ++I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 366 KVPIDYRLKHNDLLANIVHRHEVPVTCQPITIVHMDEDIVVVNKPASIPVHPCGRYRHNT 425
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E +L L +HRLDRL SGLL+ R+ KA QQI +V K YI RV G+
Sbjct: 426 VVFILAKEFNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEGI 485
Query: 233 FPEG----EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+G ++ ++V ++Y + + +GK T F ++S NG S+VL
Sbjct: 486 FPDGIVECKEPIEV-VSYKIGVCKVSP-----------RGKDCTTTFQKLSQNGKTSVVL 533
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSAD 330
C+P+TGR HQIRVHLQY GYPI ND LY E +G S D
Sbjct: 534 CKPLTGRMHQIRVHLQYLGYPILNDPLYNHEVFGPLKGRSGD 575
>gi|321475493|gb|EFX86456.1| hypothetical protein DAPPUDRAFT_313092 [Daphnia pulex]
Length = 670
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/269 (44%), Positives = 162/269 (60%), Gaps = 16/269 (5%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
+Y F +G R V PYYF F + K RW G+ I+D+FA EF+ P + Y +K G + V+
Sbjct: 159 EYFFENGLRKVYPYYFTFTTFTKGRWVGEKILDVFAREFRAHPVEEYERCIKSGSLTVNY 218
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
E V + Y +K + +++ +HRHE PV + + I+ ++ D++ + KP SVPVHPCG+YR N
Sbjct: 219 EKVDIDYRLKHNDLLANIVHRHEVPVESKIIEIVYQDDDMIVIDKPCSVPVHPCGRYRHN 278
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV IL EH+L L +HRLDRL SGLL+ RN KA QI V K Y+ RV G
Sbjct: 279 TVAFILAKEHNLRNLRTIHRLDRLTSGLLMFGRNQEKARQMEVQIRTRLVSKEYVCRVGG 338
Query: 232 VFPEGE----QVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIV 287
FP G + ++V ++Y R + KGK T+F R+S NG S+V
Sbjct: 339 EFPSGHIMCTEPIEV-VSYKIGVCRVSP-----------KGKDCQTEFERLSYNGKTSVV 386
Query: 288 LCEPITGRTHQIRVHLQYTGYPIANDMLY 316
LC+P TGR HQIRVHLQY GYPIAND LY
Sbjct: 387 LCKPRTGRMHQIRVHLQYLGYPIANDPLY 415
>gi|195384878|ref|XP_002051139.1| GJ13872 [Drosophila virilis]
gi|194147596|gb|EDW63294.1| GJ13872 [Drosophila virilis]
Length = 807
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 165/268 (61%), Gaps = 16/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+D+F++EF+ P + Y ++ G + V+ E
Sbjct: 352 YYMENGLRKVYPYYFTFTTFTKGRWVGEKILDIFSKEFRAHPAEEYERCIQTGTLTVNFE 411
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP+ Y +K + +++ +HRHE PV ++I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 412 KVPIDYRLKHNDLLANIVHRHEVPVTCQPITIVHMDEDIVVVNKPASIPVHPCGRYRHNT 471
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E +L L +HRLDRL SGLL+ R+ KA QQI +V K YI RV G+
Sbjct: 472 VVFILAKEFNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEGI 531
Query: 233 FPEG----EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+G ++ ++V ++Y + + KGK T F ++S NG S+VL
Sbjct: 532 FPDGVVECKEPIEV-VSYKIGVCKVSQ-----------KGKDCTTTFQKLSQNGKTSVVL 579
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C+P+TGR HQIRVHLQY G+PI ND LY
Sbjct: 580 CKPLTGRMHQIRVHLQYLGFPILNDPLY 607
>gi|157116527|ref|XP_001658535.1| ribosomal pseudouridine synthase [Aedes aegypti]
gi|108883445|gb|EAT47670.1| AAEL001242-PA [Aedes aegypti]
Length = 516
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 163/268 (60%), Gaps = 16/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+D+FA EF+ P + Y +K G + V+ E
Sbjct: 53 YYIENGLRKVYPYYFTFTTFTKGRWVGEKILDVFAREFRAHPAEEYERCIKAGTLTVNYE 112
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP Y +K + +++ +HRHE PV + ++I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 113 KVPTDYRLKHNDLLANIVHRHEVPVTSQPITIVHMDDDIVVVNKPASIPVHPCGRYRHNT 172
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E++L L +HRLDRL SGLL+ R+ KA QI +V K YI RV G
Sbjct: 173 VVFILAKEYNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEHQIRNRQVQKEYICRVEGE 232
Query: 233 FPEG----EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+G ++ ++V ++Y + + KGK T F ++ NGT S+VL
Sbjct: 233 FPDGIIECKEPIEV-VSYKIGVCKVSP-----------KGKECTTTFQKLGYNGTSSVVL 280
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C+P+TGR HQIRVHLQY GYP+ ND LY
Sbjct: 281 CKPLTGRMHQIRVHLQYLGYPVVNDPLY 308
>gi|195339847|ref|XP_002036528.1| GM18469 [Drosophila sechellia]
gi|194130408|gb|EDW52451.1| GM18469 [Drosophila sechellia]
Length = 537
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 161/264 (60%), Gaps = 8/264 (3%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F +G R V PY+F F + K RW + I+D+F EF+ P + Y +++ G++ V+ E
Sbjct: 127 YYFENGLRKVYPYFFTFTTFAKGRWVDEKILDVFVREFRAAPPEEYERSLEAGKLTVNSE 186
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP Y +K + +++ +HRHE PV + + I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 187 KVPKDYRIKHNDLLANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPASIPVHPCGRYRHNT 246
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL EH+L L +HRLDRL SGLL+ R A KA QI +V K Y+ RV G
Sbjct: 247 VVFILAKEHNLKNLRTIHRLDRLTSGLLLFGRTAEKARELELQIRTRQVQKEYVCRVEGR 306
Query: 233 FPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPI 292
FP+G +V+ N + + + + KGK T F RI G+ SIVLC+P+
Sbjct: 307 FPDG--IVECNEKIDVVSYKI------GVCKVSPKGKDCKTTFKRIGEVGSDSIVLCKPL 358
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGR HQIRVHLQY GYPI+ND LY
Sbjct: 359 TGRMHQIRVHLQYLGYPISNDPLY 382
>gi|158298572|ref|XP_553504.3| AGAP009693-PA [Anopheles gambiae str. PEST]
gi|157013948|gb|EAL39149.3| AGAP009693-PA [Anopheles gambiae str. PEST]
Length = 494
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 162/268 (60%), Gaps = 16/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+D+FA EF+ P + Y +K G + V+ E
Sbjct: 53 YYIENGLRKVYPYYFTFTTFTKGRWVGEKILDVFAREFRAHPAEEYERCIKAGTLTVNYE 112
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP Y +K + +++ +HRHE PV + ++I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 113 KVPTDYRLKHNDLLANIVHRHEVPVTSQPITIVHMDDDIVVVNKPASIPVHPCGRYRHNT 172
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E++L L +HRLDRL SGLL+ R+ KA QI +V K YI RV G
Sbjct: 173 VVFILAKEYNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEHQIRNRQVQKEYICRVEGE 232
Query: 233 FPEG----EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+G ++ ++V ++Y + + KGK T F ++ NG S+VL
Sbjct: 233 FPDGIIECKEPIEV-VSYKIGVCKVSP-----------KGKECTTTFQKLGFNGNSSVVL 280
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C+P+TGR HQIRVHLQY GYP+ ND LY
Sbjct: 281 CKPLTGRMHQIRVHLQYLGYPVVNDPLY 308
>gi|195578239|ref|XP_002078973.1| GD23709 [Drosophila simulans]
gi|194190982|gb|EDX04558.1| GD23709 [Drosophila simulans]
Length = 541
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 161/264 (60%), Gaps = 8/264 (3%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F +G R V PY+F F + K RW + I+D+F EF+ P + Y +++ G++ V+ E
Sbjct: 127 YYFENGLRKVYPYFFTFTTFAKGRWVDEKILDVFVREFRAAPPEEYERSLEAGKLTVNSE 186
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP Y +K + +++ +HRHE PV + + I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 187 KVPKDYRIKHNDLLANVVHRHEVPVTSQPIKIVFMDKDIVVVNKPASIPVHPCGRYRHNT 246
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL EH+L L +HRLDRL SGLL+ R A KA QI +V K Y+ RV G
Sbjct: 247 VVFILAKEHNLKNLRTIHRLDRLTSGLLLFGRTAEKARELELQIRTRQVQKEYVCRVEGR 306
Query: 233 FPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPI 292
FP+G +V+ N + + + + KGK T F RI G+ SIVLC+P+
Sbjct: 307 FPDG--IVECNEKIDVVSYKI------GVCKVSPKGKDCKTTFKRIGEVGSDSIVLCKPL 358
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGR HQIRVHLQY GYPI+ND LY
Sbjct: 359 TGRMHQIRVHLQYLGYPISNDPLY 382
>gi|195146686|ref|XP_002014315.1| GL19017 [Drosophila persimilis]
gi|194106268|gb|EDW28311.1| GL19017 [Drosophila persimilis]
Length = 644
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 161/268 (60%), Gaps = 16/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+D+F+ EF+ P + Y ++ G + V+ E
Sbjct: 290 YYIENGLRKVYPYYFTFTTFTKGRWVGEKILDIFSREFRAHPSEEYERCIQAGTLTVNFE 349
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP+ Y +K + +++ +HRHE PV + I+ D++ V KP S+PVHPCG+YR NT
Sbjct: 350 KVPIDYRLKHNDLLANIVHRHEVPVTCQPIKIVHMNEDLVVVNKPASIPVHPCGRYRHNT 409
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E +L L +HRLDRL SGLL+ R+ KA QQI +V K YI RV G+
Sbjct: 410 VVFILAKEFNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEGI 469
Query: 233 FP----EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E ++ ++V ++Y + + +GK T F +IS NG S+VL
Sbjct: 470 FPDEIVECKEPIEV-VSYKIGVCKVSQ-----------RGKDCTTTFQKISQNGKTSVVL 517
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C+P+TGR HQIRVHLQY GYPI ND LY
Sbjct: 518 CKPLTGRMHQIRVHLQYLGYPILNDPLY 545
>gi|320544926|ref|NP_001188783.1| RluA-2, isoform C [Drosophila melanogaster]
gi|318068417|gb|ADV37033.1| RluA-2, isoform C [Drosophila melanogaster]
Length = 543
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 116/264 (43%), Positives = 161/264 (60%), Gaps = 8/264 (3%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F +G R V PY+F F + K RW + I+D+F EF+ P + Y +++ G++ V+ E
Sbjct: 127 YYFENGLRKVYPYFFTFTTFAKGRWVDEKILDVFVREFRAAPPEEYERSLEAGKLTVNSE 186
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP Y +K + +++ +HRHE PV + + I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 187 KVPKDYKIKHNDLLANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPASIPVHPCGRYRHNT 246
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL EH+L L +HRLDRL SGLL+ R A KA QI +V K Y+ RV G
Sbjct: 247 VVFILAKEHNLKNLRTIHRLDRLTSGLLLFGRTAEKARELELQIRTRQVQKEYVCRVEGR 306
Query: 233 FPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPI 292
FP+G +V+ N + + + + KGK T F RI G+ SIVLC+P+
Sbjct: 307 FPDG--IVECNEKIDVVSYKI------GVCKVSPKGKDCKTTFKRIGEVGSDSIVLCKPL 358
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGR HQIRVHLQ+ GYPI+ND LY
Sbjct: 359 TGRMHQIRVHLQFLGYPISNDPLY 382
>gi|195118758|ref|XP_002003903.1| GI20532 [Drosophila mojavensis]
gi|193914478|gb|EDW13345.1| GI20532 [Drosophila mojavensis]
Length = 798
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 118/282 (41%), Positives = 169/282 (59%), Gaps = 16/282 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R PYYF F + K RW G+ I+D+F++EF+ P + Y ++ G + V+ E
Sbjct: 347 YYIENGLRKGYPYYFTFTTFTKGRWVGEKILDIFSKEFRAHPAEEYERCIQTGTLTVNFE 406
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP+ Y +K + +++ +HRHE PV ++I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 407 KVPIDYRLKHNDLLANIVHRHEVPVTCQPITIVHMDEDIVVVNKPASIPVHPCGRYRHNT 466
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E +L L +HRLDRL SGLL+ R+ KA QQI +V K YI RV G+
Sbjct: 467 VVFILAKEFNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEGI 526
Query: 233 FPEG----EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+G ++ ++V ++Y + + KGK T F ++S NG S+VL
Sbjct: 527 FPDGVVECKEPIEV-VSYKIGVCKVSQ-----------KGKDCTTTFQKLSQNGKTSVVL 574
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSAD 330
C+P+TGR HQIRVHLQY G+PI ND LY E +G + D
Sbjct: 575 CKPLTGRMHQIRVHLQYLGFPILNDPLYNHEVFGPLKGRAGD 616
>gi|19921090|ref|NP_609411.1| RluA-2, isoform A [Drosophila melanogaster]
gi|442627330|ref|NP_001188782.2| RluA-2, isoform D [Drosophila melanogaster]
gi|16198203|gb|AAL13915.1| LD40728p [Drosophila melanogaster]
gi|22946170|gb|AAF52961.2| RluA-2, isoform A [Drosophila melanogaster]
gi|220946196|gb|ACL85641.1| RluA-2-PA [synthetic construct]
gi|220955960|gb|ACL90523.1| RluA-2-PA [synthetic construct]
gi|440213673|gb|ADV37032.2| RluA-2, isoform D [Drosophila melanogaster]
Length = 547
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 116/264 (43%), Positives = 161/264 (60%), Gaps = 8/264 (3%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F +G R V PY+F F + K RW + I+D+F EF+ P + Y +++ G++ V+ E
Sbjct: 127 YYFENGLRKVYPYFFTFTTFAKGRWVDEKILDVFVREFRAAPPEEYERSLEAGKLTVNSE 186
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP Y +K + +++ +HRHE PV + + I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 187 KVPKDYKIKHNDLLANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPASIPVHPCGRYRHNT 246
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL EH+L L +HRLDRL SGLL+ R A KA QI +V K Y+ RV G
Sbjct: 247 VVFILAKEHNLKNLRTIHRLDRLTSGLLLFGRTAEKARELELQIRTRQVQKEYVCRVEGR 306
Query: 233 FPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPI 292
FP+G +V+ N + + + + KGK T F RI G+ SIVLC+P+
Sbjct: 307 FPDG--IVECNEKIDVVSYKI------GVCKVSPKGKDCKTTFKRIGEVGSDSIVLCKPL 358
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGR HQIRVHLQ+ GYPI+ND LY
Sbjct: 359 TGRMHQIRVHLQFLGYPISNDPLY 382
>gi|147861752|emb|CAN83167.1| hypothetical protein VITISV_021912 [Vitis vinifera]
Length = 208
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 128/192 (66%), Positives = 142/192 (73%), Gaps = 29/192 (15%)
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNA 248
+HRLDRLVSGLLILAR+ASKAD FRQQIEAG V K+YIA+V GVFP+ E
Sbjct: 4 IHRLDRLVSGLLILARSASKADSFRQQIEAGMVQKQYIAKVTGVFPDDE----------- 52
Query: 249 SAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGY 308
G+ G+TPLKGK+ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTG+
Sbjct: 53 --------VGNCCGNTPLKGKSACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGH 104
Query: 309 PIANDMLYLCEHVTHR--EGMSADRAAAYSHHSPPPVSSDKS-------ESSSEDFSIDP 359
PIANDMLYL E R +G+SADRAAA S S P SS KS ++S+ DFSIDP
Sbjct: 105 PIANDMLYLSEFSVDRSTKGLSADRAAANSGCSLPS-SSPKSCVDEYCDDNSTVDFSIDP 163
Query: 360 MCTNCPNLAPKG 371
MCTNCPNL PKG
Sbjct: 164 MCTNCPNLTPKG 175
>gi|195118760|ref|XP_002003904.1| GI18161 [Drosophila mojavensis]
gi|193914479|gb|EDW13346.1| GI18161 [Drosophila mojavensis]
Length = 545
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/269 (43%), Positives = 164/269 (60%), Gaps = 18/269 (6%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PY F F + K RW G+ I+D+F+ EF+ +P + Y +++ G + V+ E
Sbjct: 135 YYIENGLRKVYPYSFTFTTFTKGRWVGEGILDVFSREFRAQPPEEYKRSIEAGNLTVNYE 194
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VPV Y +K + +++ +HRHE PV A +SI+ + D+L V KP S+PVHPCG+YR NT
Sbjct: 195 KVPVDYRLKHNDLLANTVHRHEVPVTAQPISIVHIDDDILVVNKPASIPVHPCGRYRHNT 254
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
V+ IL E++L L +HRLDRL SGLL+ RN+ KA QQI +V K Y+ V G
Sbjct: 255 VIFILAKEYNLKNLRTIHRLDRLTSGLLLFGRNSEKARQMEQQIRNRQVQKEYVCCVEGH 314
Query: 233 FPEGEQVVDVN-----INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIV 287
FP+G +++ N ++Y + + KGK T F RI+ G +SIV
Sbjct: 315 FPDG--IIECNEPIEVVSYKIGVCKVSK-----------KGKDCQTTFKRIAQAGDYSIV 361
Query: 288 LCEPITGRTHQIRVHLQYTGYPIANDMLY 316
C+P+TGR HQIRVHLQY GYPI ND LY
Sbjct: 362 QCKPLTGRMHQIRVHLQYLGYPIVNDPLY 390
>gi|194862296|ref|XP_001969969.1| GG23644 [Drosophila erecta]
gi|190661836|gb|EDV59028.1| GG23644 [Drosophila erecta]
Length = 537
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/264 (43%), Positives = 161/264 (60%), Gaps = 8/264 (3%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F +G R V PY+F F + K RW + I+D+F EF+ P + Y +++ G++ V+ E
Sbjct: 127 YYFENGLRKVYPYFFTFTTFAKGRWVDEKILDVFVREFRAAPPEEYERSLEAGKLTVNYE 186
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP Y +K + +++ +HRHE PV + + I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 187 KVPKDYKIKHNDLLANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPASIPVHPCGRYRHNT 246
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL EH+L L +HRLDRL SGLL+ R A +A QI +V K Y+ RV G
Sbjct: 247 VVFILAKEHNLKNLRTIHRLDRLTSGLLLFGRTAERARELELQIRTRQVQKEYVCRVEGR 306
Query: 233 FPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPI 292
FP+G +V+ N + + + + KGK T F RI G+ SIVLC+P+
Sbjct: 307 FPDG--IVECNEKIDVVSYKI------GVCKVSPKGKDCKTTFKRIGEVGSDSIVLCKPL 358
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGR HQIRVHLQY GYPI+ND LY
Sbjct: 359 TGRMHQIRVHLQYLGYPISNDPLY 382
>gi|344294170|ref|XP_003418792.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
[Loxodonta africana]
Length = 535
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/269 (43%), Positives = 170/269 (63%), Gaps = 17/269 (6%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G++++D+F+ EF+ P YY +AV+ GR++++EE
Sbjct: 123 YYFEGGLRKVRPYYFDFQTYCKGRWVGRSLLDVFSTEFRAHPLAYYEAAVRAGRLRLNEE 182
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A V +L + DV+ V KP S+PVHPCG++R N
Sbjct: 183 RVQDLSIVLKDNDFLRNTVHRHEPPVTAEPVRLLAENEDVVVVDKPSSIPVHPCGRFRHN 242
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 243 TVIFILGKEHQLQELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 302
Query: 232 VFPEGEQVV----DVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIV 287
FP E+V + ++Y R +GK T F R+S NG S+V
Sbjct: 303 EFP-AEKVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGHSSVV 350
Query: 288 LCEPITGRTHQIRVHLQYTGYPIANDMLY 316
C+P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 351 RCQPLTGRTHQIRVHLQFLGHPILNDPIY 379
>gi|354492458|ref|XP_003508365.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
[Cricetulus griseus]
Length = 553
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 169/268 (63%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G++++ +F+ EF+ +P +YY +AV+ GR+ ++EE
Sbjct: 145 YYFEGGLRKVRPYYFDFQTYCKGRWVGRSLLHVFSTEFRSQPLEYYEAAVRAGRLHLNEE 204
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A + +L + DV+ + KP S+PVHPCG++R N
Sbjct: 205 PVQDLSIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVIDKPSSIPVHPCGRFRHN 264
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 265 TVIFILGKEHHLKELHPLHRLDRLTSGVLMFAKTAAFSEKIHEQVRDRQLEKEYVCRVEG 324
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+ E + + ++Y R +GK T F R+S NG S+V
Sbjct: 325 EFPDKEVICKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGHSSVVQ 373
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 374 CRPLTGRTHQIRVHLQFLGHPILNDPIY 401
>gi|344253213|gb|EGW09317.1| RNA pseudouridylate synthase domain-containing protein 2
[Cricetulus griseus]
Length = 568
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 169/268 (63%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G++++ +F+ EF+ +P +YY +AV+ GR+ ++EE
Sbjct: 160 YYFEGGLRKVRPYYFDFQTYCKGRWVGRSLLHVFSTEFRSQPLEYYEAAVRAGRLHLNEE 219
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A + +L + DV+ + KP S+PVHPCG++R N
Sbjct: 220 PVQDLSIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVIDKPSSIPVHPCGRFRHN 279
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 280 TVIFILGKEHHLKELHPLHRLDRLTSGVLMFAKTAAFSEKIHEQVRDRQLEKEYVCRVEG 339
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+ E + + ++Y R +GK T F R+S NG S+V
Sbjct: 340 EFPDKEVICKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGHSSVVQ 388
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 389 CRPLTGRTHQIRVHLQFLGHPILNDPIY 416
>gi|109730743|gb|AAI17829.1| RNA pseudouridylate synthase domain containing 2 [Mus musculus]
gi|109734876|gb|AAI17828.1| RNA pseudouridylate synthase domain containing 2 [Mus musculus]
Length = 553
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 168/268 (62%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G++++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 146 YYFEGGLRKVRPYYFDFQTYCKGRWVGRSLLHVFSTEFRSQPLSYYEAAVRAGRLHLNEE 205
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A + +L + DV+ + KP S+PVHPCG++R N
Sbjct: 206 PVQDLSIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENNDVVVIDKPSSIPVHPCGRFRHN 265
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 266 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSEKIHEQVRDRQLEKEYVCRVAG 325
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+ E + + ++Y R +GK T F R+S NG S+V
Sbjct: 326 EFPDKEVICKEPILVVSYKVGVCRVDP-----------RGKPCETMFQRLSYNGRSSVVQ 374
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 375 CRPLTGRTHQIRVHLQFLGHPILNDPIY 402
>gi|148695986|gb|EDL27933.1| RNA pseudouridylate synthase domain containing 2 [Mus musculus]
Length = 553
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 168/268 (62%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G++++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 146 YYFEGGLRKVRPYYFDFQTYCKGRWVGRSLLHVFSTEFRSQPLSYYEAAVRAGRLHLNEE 205
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A + +L + DV+ + KP S+PVHPCG++R N
Sbjct: 206 PVQDLSIVLKDNDFLRNTVHRHEPPVTAEPIHLLAENNDVVVIDKPSSIPVHPCGRFRHN 265
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 266 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSEKIHEQVRDRQLEKEYVCRVAG 325
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+ E + + ++Y R +GK T F R+S NG S+V
Sbjct: 326 EFPDKEVICKEPILVVSYKVGVCRVDP-----------RGKPCETMFQRLSYNGRSSVVQ 374
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 375 CRPLTGRTHQIRVHLQFLGHPILNDPIY 402
>gi|27734094|ref|NP_775626.1| RNA pseudouridylate synthase domain-containing protein 2 [Mus
musculus]
gi|158564131|sp|Q149F1.2|RUSD2_MOUSE RecName: Full=RNA pseudouridylate synthase domain-containing
protein 2
gi|26336789|dbj|BAC32077.1| unnamed protein product [Mus musculus]
Length = 553
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 168/268 (62%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G++++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 146 YYFEGGLRKVRPYYFDFQTYCKGRWVGRSLLHVFSTEFRSQPLSYYEAAVRAGRLHLNEE 205
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A + +L + DV+ + KP S+PVHPCG++R N
Sbjct: 206 PVQDLSIVLKDNDFLRNTVHRHEPPVTAEPIHLLAENNDVVVIDKPSSIPVHPCGRFRHN 265
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 266 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSEKIHEQVRDRQLEKEYVCRVAG 325
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+ E + + ++Y R +GK T F R+S NG S+V
Sbjct: 326 EFPDKEVICKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGRSSVVQ 374
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 375 CRPLTGRTHQIRVHLQFLGHPILNDPIY 402
>gi|345479289|ref|XP_001605561.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Nasonia vitripennis]
Length = 602
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/264 (43%), Positives = 158/264 (59%), Gaps = 8/264 (3%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+++FA EF+ P + Y ++ G + V+ +
Sbjct: 162 YYVENGLRKVYPYYFTFTTFTKGRWVGEKILEVFAREFRAHPAEEYERCIRAGTLTVNYQ 221
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
V V Y ++ + +++ +HRHE PV + ++++ + DV+ V KP S+PVHPCG+YR NT
Sbjct: 222 KVDVDYRLRHNDLLANVVHRHEVPVTSEPITVIHMDEDVVVVNKPASIPVHPCGRYRHNT 281
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E++L L +HRLDRL SG+L+ R KA QI +V K+Y+ RV G
Sbjct: 282 VVFILAKEYNLKNLRTIHRLDRLTSGILLFGRTPKKARQMEHQIRNRQVQKQYVCRVEGE 341
Query: 233 FPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPI 292
FPE E V I S + D KGK TKF R+S NG S+VLC+P
Sbjct: 342 FPEEEIVCSEAIEV-VSYKIGVCKVSD-------KGKDCITKFKRLSYNGKSSVVLCKPQ 393
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGR HQIRVHLQY GYP+ ND LY
Sbjct: 394 TGRMHQIRVHLQYLGYPVVNDPLY 417
>gi|195146688|ref|XP_002014316.1| GL19135 [Drosophila persimilis]
gi|194106269|gb|EDW28312.1| GL19135 [Drosophila persimilis]
Length = 478
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/269 (45%), Positives = 163/269 (60%), Gaps = 18/269 (6%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F +G R V PY+F F + K RW G+ I+D+FA EF+ P + Y +++ G++ V+ E
Sbjct: 64 YYFENGLRKVYPYFFTFTTFTKGRWVGEKILDVFAREFRAHPAEEYKRSIETGKLTVNYE 123
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VPV Y +K + +++ +HRHE PV ++I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 124 KVPVDYRLKHNDLLANIVHRHEVPVSLQSITIVHMDEDIVVVNKPASIPVHPCGRYRHNT 183
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL H+L L +HRLDRL SGLLI R + KA QQI +V K YI RV G
Sbjct: 184 VVFILAKSHNLKNLRTIHRLDRLTSGLLIFGRTSKKARELEQQIRNRQVQKEYICRVEGR 243
Query: 233 FPEGEQVVDVN-----INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIV 287
FP+G +++ N ++Y R + GK T F RIS G SIV
Sbjct: 244 FPDG--IIECNEPIQVVSYKIGVCRVSP-----------NGKDCRTTFRRISEVGDCSIV 290
Query: 288 LCEPITGRTHQIRVHLQYTGYPIANDMLY 316
LC+P+TGR HQIRVHLQY GYPI ND LY
Sbjct: 291 LCKPLTGRMHQIRVHLQYLGYPIVNDPLY 319
>gi|195434112|ref|XP_002065047.1| GK15252 [Drosophila willistoni]
gi|194161132|gb|EDW76033.1| GK15252 [Drosophila willistoni]
Length = 532
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/269 (43%), Positives = 164/269 (60%), Gaps = 18/269 (6%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PY+F F + K RW G I+D+F+ EF+ P + Y +++ G++ V+ E
Sbjct: 127 YYIENGLRKVYPYFFTFTTFTKGRWVGDKILDVFSREFRAHPAEVYQRSIEAGKLTVNHE 186
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
+VP Y++K + +++ +HRHE PV A + I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 187 IVPADYSLKHNDLLANVVHRHEVPVTAQPIRIIHMDEDIVVVNKPASIPVHPCGRYRHNT 246
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E +L L +HRLDRL SGLL+ RNA+KA QQI +V K Y+ V G
Sbjct: 247 VVFILAKEFNLKDLRTIHRLDRLTSGLLLFGRNANKARELEQQIRQRQVQKEYVCLVEGK 306
Query: 233 FPEGEQVVDVN-----INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIV 287
FP+G +++ N ++Y R + KGK T F R+S G S+V
Sbjct: 307 FPDG--IIECNESIEVVSYKIGVCRVSP-----------KGKDCKTTFQRLSNVGDSSLV 353
Query: 288 LCEPITGRTHQIRVHLQYTGYPIANDMLY 316
LC+P+TGR HQIRVHLQY GYPI ND LY
Sbjct: 354 LCKPLTGRMHQIRVHLQYLGYPIVNDPLY 382
>gi|74000106|ref|XP_544620.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
[Canis lupus familiaris]
Length = 518
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 167/268 (62%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 106 YYFEGGLRKVRPYYFDFQTYCKGRWVGHSLLHVFSTEFRAQPLSYYEAAVRAGRLHLNEE 165
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A V +L + DV+ V KP S+PVHPCG++R N
Sbjct: 166 PVQDLSIMLKDNDFLRNRVHRHEPPVTAEPVRLLAENEDVVVVDKPSSIPVHPCGRFRHN 225
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 226 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 285
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R DT +GK T F R+S NG S+V
Sbjct: 286 EFPTEEVTCKEPILVVSYKVGVCRV---------DT--RGKPCETVFQRLSYNGHSSVVR 334
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 335 CRPLTGRTHQIRVHLQFLGHPILNDPIY 362
>gi|431896121|gb|ELK05539.1| RNA pseudouridylate synthase domain-containing protein 2 [Pteropus
alecto]
Length = 518
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 167/268 (62%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 106 YYFEGGLRKVQPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVRAGRLHLNEE 165
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 166 PVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 225
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ AS ++ +Q+ ++ K YI RV G
Sbjct: 226 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTASVSERIHEQVRDRQLEKEYICRVEG 285
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R DT +GK T F R+S NG S+V
Sbjct: 286 EFPAEEVTCKEPILVVSYKVGVCRV---------DT--RGKPCETVFQRLSYNGHSSVVR 334
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 335 CRPLTGRTHQIRVHLQFLGHPILNDPIY 362
>gi|195384880|ref|XP_002051140.1| GJ14588 [Drosophila virilis]
gi|194147597|gb|EDW63295.1| GJ14588 [Drosophila virilis]
Length = 552
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/269 (42%), Positives = 162/269 (60%), Gaps = 18/269 (6%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PY F F + K RW G+ I+D+F+ EF+ P + Y +++ G + V+ E
Sbjct: 137 YYIENGLRKVYPYSFTFTTFTKGRWVGEGILDVFSREFRAHPAEEYKRSIEAGTLTVNYE 196
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP+ Y +K + +++ +HRHE PV + ++I+ + D+L V KP S+PVHPCG+YR NT
Sbjct: 197 KVPIDYKLKHNDLLANTVHRHEVPVTSQPITIVHMDEDILVVNKPASIPVHPCGRYRHNT 256
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
V+ IL E +L L +HR+DRL SGLL+ RN+ KA QQI +V K YI V G
Sbjct: 257 VIFILAKEFNLKNLRTIHRIDRLTSGLLLFGRNSEKARQMEQQIRNRQVQKEYICCVEGQ 316
Query: 233 FPEGEQVVDVN-----INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIV 287
FP+G +++ N ++Y + + KGK T F RI+ G +SIV
Sbjct: 317 FPDG--IIECNEPIEVVSYKIGVCKVSP-----------KGKDCKTTFKRIAQAGDYSIV 363
Query: 288 LCEPITGRTHQIRVHLQYTGYPIANDMLY 316
C+P+TGR HQIRVHLQY GYPI ND LY
Sbjct: 364 QCKPLTGRMHQIRVHLQYLGYPIVNDPLY 392
>gi|301754896|ref|XP_002913309.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Ailuropoda melanoleuca]
Length = 511
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/268 (42%), Positives = 167/268 (62%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 99 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVREGRLHLNEE 158
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A V +L + D++ V KP S+PVHPCG++R N
Sbjct: 159 PVQDLSIVLKDNDFLRNRVHRHEPPVTAEPVRLLAENEDMVVVDKPSSIPVHPCGRFRHN 218
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 219 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 278
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + + ++Y R A +GK T F R+S NG S+V
Sbjct: 279 EFPTEEVICKEPILVVSYKVGVCRVDA-----------RGKPCETVFQRLSYNGHSSVVR 327
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 328 CRPLTGRTHQIRVHLQFLGHPILNDPIY 355
>gi|194761918|ref|XP_001963138.1| GF15796 [Drosophila ananassae]
gi|190616835|gb|EDV32359.1| GF15796 [Drosophila ananassae]
Length = 524
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 163/268 (60%), Gaps = 16/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F +G R V PY F F ++ K RW + I+D+F+ EF+ P + Y +++ G++ V+ E
Sbjct: 130 YYFENGLRKVYPYNFTFTTYAKGRWVDEKILDVFSREFRAAPPEVYERSLEAGKLTVNNE 189
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP Y +K + +++ +HRHE PV + ++I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 190 KVPKDYKIKHNDLLANVVHRHEVPVTSQPITIVYMDKDIVVVNKPASIPVHPCGRYRHNT 249
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL EH+L L +HRLDRL SGLL+ R + KA QQI +V K Y+ RV G
Sbjct: 250 VVFILAKEHNLKNLRTIHRLDRLTSGLLLFGRTSDKARELEQQIRNRQVQKEYVCRVEGR 309
Query: 233 FPEGE----QVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+G + +DV ++Y + + KGK T F RI G SIV
Sbjct: 310 FPDGIIECCEPIDV-VSYKIGVCKVSP-----------KGKDCKTTFQRIGEVGDCSIVH 357
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C+P+TGR HQIRVHLQY GYPI+ND LY
Sbjct: 358 CKPLTGRMHQIRVHLQYLGYPISNDPLY 385
>gi|209529662|ref|NP_001129317.1| RNA pseudouridylate synthase domain-containing protein 2 [Rattus
norvegicus]
gi|392346643|ref|XP_003749602.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Rattus norvegicus]
gi|149022995|gb|EDL79889.1| RNA pseudouridylate synthase domain containing 2 (predicted)
[Rattus norvegicus]
Length = 553
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 111/268 (41%), Positives = 168/268 (62%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G++++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 146 YYFEGGLRKVRPYYFDFQTYCKGRWVGRSLLHVFSTEFRSQPLAYYEAAVRAGRLHLNEE 205
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A + +L + DV+ + KP S+PVHPCG++R N
Sbjct: 206 PVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENDDVVVIDKPSSIPVHPCGRFRHN 265
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 266 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSEKIHEQVRDRQLEKEYVCRVAG 325
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+ E + + ++Y R + GK T F R+S NG S+V
Sbjct: 326 EFPDKEVICKEPILVVSYKVGVCRVDPQ-----------GKPCETVFQRLSYNGRSSVVQ 374
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 375 CRPLTGRTHQIRVHLQFLGHPILNDPIY 402
>gi|338717531|ref|XP_001501154.3| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
[Equus caballus]
Length = 713
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 167/268 (62%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 301 YYFEGGLRKVRPYYFDFQTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVRAGRLHLNEE 360
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A V +L + D++ V KP S+PVHPCG++R N
Sbjct: 361 PVQDLSIVLKDNDFLRNTVHRHEPPVTAEPVRLLAENEDMVVVDKPSSIPVHPCGRFRHN 420
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 421 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 480
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R DT +GK T F R+S NG S+V
Sbjct: 481 EFPTEEVTCKEPILVVSYKVGVCRV---------DT--RGKPCETVFQRLSYNGHSSVVR 529
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 530 CRPLTGRTHQIRVHLQFLGHPILNDPIY 557
>gi|281338228|gb|EFB13812.1| hypothetical protein PANDA_001071 [Ailuropoda melanoleuca]
Length = 545
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 114/268 (42%), Positives = 167/268 (62%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 133 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVREGRLHLNEE 192
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A V +L + D++ V KP S+PVHPCG++R N
Sbjct: 193 PVQDLSIVLKDNDFLRNRVHRHEPPVTAEPVRLLAENEDMVVVDKPSSIPVHPCGRFRHN 252
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 253 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 312
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + + ++Y R A +GK T F R+S NG S+V
Sbjct: 313 EFPTEEVICKEPILVVSYKVGVCRVDA-----------RGKPCETVFQRLSYNGHSSVVR 361
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 362 CRPLTGRTHQIRVHLQFLGHPILNDPIY 389
>gi|444706843|gb|ELW48161.1| RNA pseudouridylate synthase domain-containing protein 2 [Tupaia
chinensis]
Length = 553
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/268 (42%), Positives = 165/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G T++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 106 YYFEGGLRKVRPYYFDFRTYCKGRWVGHTLLHVFSTEFRAQPLAYYEAAVRAGRLHLNEE 165
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A + +L + D++ V KP S+PVHPCG++R N
Sbjct: 166 PVQDLSIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDMVVVDKPSSIPVHPCGRFRHN 225
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 226 TVIFILGKEHKLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 285
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R +GK T F R+S NG S+V
Sbjct: 286 EFPTEEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGHSSVVR 334
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 335 CRPLTGRTHQIRVHLQFLGHPILNDPIY 362
>gi|410961643|ref|XP_003987389.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
[Felis catus]
Length = 518
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 167/268 (62%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 106 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVRAGRLHLNEE 165
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A V +L + DV+ V KP S+PVHPCG++R N
Sbjct: 166 PVQDLNIVLKDNDFLRNRVHRHEPPVTAEPVRLLAENEDVVVVDKPSSIPVHPCGRFRHN 225
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 226 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 285
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R DT +GK T F R+S NG S+V
Sbjct: 286 EFPTEEVTCKEPILVVSYKVGVCRV---------DT--RGKPCETVFQRLSYNGHSSVVR 334
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 335 CRPLTGRTHQIRVHLQFLGHPILNDPIY 362
>gi|348579411|ref|XP_003475473.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Cavia porcellus]
Length = 545
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 113/268 (42%), Positives = 165/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 133 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSSEFRAQPLAYYEAAVRAGRLHLNEE 192
Query: 113 MV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 193 PVHDLSVVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 252
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 253 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 312
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R +GK T F R+S NG S+V
Sbjct: 313 EFPAKEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGHSSVVK 361
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 362 CRPLTGRTHQIRVHLQFLGHPILNDPIY 389
>gi|340720625|ref|XP_003398734.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Bombus terrestris]
Length = 601
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 114/268 (42%), Positives = 162/268 (60%), Gaps = 16/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+++FA EF+ P + Y ++ G + V+ +
Sbjct: 183 YYVENGLRKVYPYYFTFTTFTKGRWVGEKILEVFAREFRAHPAEEYERCIRAGTLTVNYQ 242
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
V V Y ++ + +++ +HRHE PV + ++++ + DV+ V KP S+PVHPCG+YR NT
Sbjct: 243 KVDVDYRLRHNDLLANVVHRHEVPVTSEPITVIHMDEDVVVVNKPASIPVHPCGRYRHNT 302
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E++L L +HRLDRL SG+L+ R KA QI +V K+Y+ RV G
Sbjct: 303 VVFILAKEYNLKNLRTIHRLDRLTSGILLFGRTPKKARQMEHQIRNRQVHKQYVCRVEGE 362
Query: 233 FPEGEQV----VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FPE E V ++V ++Y + + KGK T+F R+S NG S+VL
Sbjct: 363 FPEEEVVCSEPIEV-VSYKIGVCKVSE-----------KGKDCVTRFKRLSYNGKSSVVL 410
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C+P TGR HQIRVHLQY GYP+ ND LY
Sbjct: 411 CKPQTGRMHQIRVHLQYLGYPVVNDPLY 438
>gi|145351767|ref|XP_001420235.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580469|gb|ABO98528.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 357
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 145/349 (41%), Positives = 195/349 (55%), Gaps = 34/349 (9%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE-EMVPVSY 118
R PY F+F+ VK RWAG+ + DLFA EF RP +YYV A GR+ E E P+
Sbjct: 1 RYCAPYDFDFVCGVKARWAGRRLCDLFASEFPMRPKEYYVKAHAMGRLCAREHEDGPM-- 58
Query: 119 TVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQ 178
+ ++ HF+HRHEPPVMA +V +L DV++V KP +VPVHP GQYR+NTV+ +L
Sbjct: 59 -LAGGNRVRHFIHRHEPPVMADEVRVLTVNDDVVSVWKPATVPVHPTGQYRRNTVLALLA 117
Query: 179 A-EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237
A DL LFP+HRLD+ VSGLL+LAR++ A+ R ++EA ++ K Y+ARV G F +G+
Sbjct: 118 ASRRDLGRLFPIHRLDKNVSGLLLLARSSEAANEMRVKMEAREMRKEYVARVRGAFNDGD 177
Query: 238 QVVDVNINYNA--SAGRSTAESGD----SLGDTPLKG-KAACTKFTRIST--NGTHSIVL 288
N+ S GR G L + LK K A TKFT I T +GT S+V
Sbjct: 178 ATPVSNVESLGFDSKGRVAIWRGKKGVTDLDERTLKSFKDASTKFTCIKTLVDGT-SLVR 236
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHHSPPPVSSD-- 346
CEP TGR+HQIR HL GYPIAND+ Y V +RA A H V ++
Sbjct: 237 CEPFTGRSHQIRAHLAMLGYPIANDVAYGGALV------EVERARAIQHACDVTVLNEAG 290
Query: 347 ---KSESSSEDFSI--------DPMCTNCPNLAPKGKRLLSSNSLEDLC 384
K ES + D+S +C +CP + G + + ++ C
Sbjct: 291 ELVKDESLAIDYSAPRKSREQSSDLCPHCPRIVHAGDQAIDLEAIWLHC 339
>gi|351707388|gb|EHB10307.1| RNA pseudouridylate synthase domain-containing protein 2
[Heterocephalus glaber]
Length = 545
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/268 (42%), Positives = 165/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 133 YYFEGGLRKVRPYYFDFQTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVQAGRLHLNEE 192
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S T+K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 193 PVQDLSVTLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 252
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 253 TVIFILGKEHQLKELRPLHRLDRLTSGVLMFAKTAAVSERIHEQVRNRQLEKEYVCRVEG 312
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R +GK T F R+S N S+V
Sbjct: 313 EFPNNEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETLFQRLSYNAHSSVVR 361
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 362 CRPLTGRTHQIRVHLQFLGHPIINDPIY 389
>gi|14043412|gb|AAH07697.1| RPUSD2 protein [Homo sapiens]
Length = 554
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 166/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+Q++E+
Sbjct: 142 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVRAGRLQLNEK 201
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 202 PVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 261
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 262 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 321
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R +GK T F R+S NG S+V
Sbjct: 322 EFPTEEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGQSSVVR 370
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 371 CRPLTGRTHQIRVHLQFLGHPILNDPIY 398
>gi|23308689|ref|NP_689473.1| RNA pseudouridylate synthase domain-containing protein 2 [Homo
sapiens]
gi|158563848|sp|Q8IZ73.2|RUSD2_HUMAN RecName: Full=RNA pseudouridylate synthase domain-containing
protein 2
gi|16550833|dbj|BAB71059.1| unnamed protein product [Homo sapiens]
gi|119612834|gb|EAW92428.1| RNA pseudouridylate synthase domain containing 2 [Homo sapiens]
gi|127796558|gb|AAH16967.2| RNA pseudouridylate synthase domain containing 2 [Homo sapiens]
Length = 545
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 166/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+Q++E+
Sbjct: 133 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVRAGRLQLNEK 192
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 193 PVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 252
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 253 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 312
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R +GK T F R+S NG S+V
Sbjct: 313 EFPTEEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGQSSVVR 361
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 362 CRPLTGRTHQIRVHLQFLGHPILNDPIY 389
>gi|403289217|ref|XP_003935761.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
isoform 1 [Saimiri boliviensis boliviensis]
Length = 545
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 165/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +A++ GR+ ++EE
Sbjct: 133 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAIRAGRLHLNEE 192
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 193 PVQDLSIVLKDNDFLRNTVHRHEPPVTAEPIHLLAENEDVVVVDKPSSIPVHPCGRFRHN 252
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 253 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 312
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R + GK T F R+S NG S+V
Sbjct: 313 EFPTEEVTCKEPILVVSYKVGVCRVDPQ-----------GKPCETVFQRLSYNGHSSVVQ 361
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 362 CRPLTGRTHQIRVHLQFLGHPILNDPIY 389
>gi|194377234|dbj|BAG63178.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 166/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+Q++E+
Sbjct: 112 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVRAGRLQLNEK 171
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 172 PVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 231
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 232 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 291
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R +GK T F R+S NG S+V
Sbjct: 292 EFPTEEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGQSSVVR 340
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 341 CRPLTGRTHQIRVHLQFLGHPILNDPIY 368
>gi|196004434|ref|XP_002112084.1| hypothetical protein TRIADDRAFT_1807 [Trichoplax adhaerens]
gi|190585983|gb|EDV26051.1| hypothetical protein TRIADDRAFT_1807, partial [Trichoplax
adhaerens]
Length = 418
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/269 (40%), Positives = 168/269 (62%), Gaps = 16/269 (5%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
+Y +G R+++PY F F +H K RW GK ++D+F EF P +YY++A++ G+I V+
Sbjct: 10 NYYIENGLRHIRPYNFTFTTHAKGRWVGKKLIDIFKNEFSSSPVEYYINAIQNGKITVNN 69
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
++ + V+ + I + +HRHEPPV A + I++ + D++ + KP S+PVHPCG+YR N
Sbjct: 70 KIPSANTIVRDNDVIRNTVHRHEPPVTANPIQIIKMDDDIVVINKPASIPVHPCGRYRHN 129
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
+VV +L ++ L L +HRLDRL SG+LI AR KA +Q+ ++ K+Y+ RV+G
Sbjct: 130 SVVFMLARDYGLQNLHTIHRLDRLTSGILIFARTLQKAQELEKQVRDRQIEKQYVCRVDG 189
Query: 232 VFP----EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIV 287
FP + ++ +DV +++ R + KGK+ T F R+S NG S+V
Sbjct: 190 EFPTETIDCKEPIDV-VSHKLGVCRVSP-----------KGKSCQTIFQRLSYNGKTSLV 237
Query: 288 LCEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGR HQIRVHLQ+ GYPI ND +Y
Sbjct: 238 KCIPLTGRMHQIRVHLQWLGYPIVNDPIY 266
>gi|332843544|ref|XP_510311.3| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
isoform 2 [Pan troglodytes]
gi|410328921|gb|JAA33407.1| RNA pseudouridylate synthase domain containing 2 [Pan troglodytes]
Length = 545
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 166/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+Q++E+
Sbjct: 133 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVRAGRLQLNEK 192
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 193 PVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 252
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 253 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 312
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R +GK T F R+S NG S+V
Sbjct: 313 EFPTEEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGQSSVVR 361
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 362 CRPLTGRTHQIRVHLQFLGHPILNDPIY 389
>gi|397512605|ref|XP_003826631.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
isoform 1 [Pan paniscus]
Length = 545
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 166/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+Q++E+
Sbjct: 133 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVRAGRLQLNEK 192
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 193 PVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 252
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 253 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 312
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R +GK T F R+S NG S+V
Sbjct: 313 EFPTEEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGQSSVVR 361
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 362 CRPLTGRTHQIRVHLQFLGHPILNDPIY 389
>gi|195471882|ref|XP_002088231.1| GE18464 [Drosophila yakuba]
gi|194174332|gb|EDW87943.1| GE18464 [Drosophila yakuba]
Length = 939
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 159/263 (60%), Gaps = 16/263 (6%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G R V PY+F F + K RW + I+D+F EF+ P + Y +++ G++ V+ E VP
Sbjct: 534 GLRKVYPYFFTFTTFAKGRWVDEKILDVFVREFRAAPPEEYERSLEAGKLTVNYEKVPKD 593
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGIL 177
Y +K + +++ +HRHE PV + + I+ + D++ V KP S+PVHPCG+YR NTVV IL
Sbjct: 594 YKIKHNDLLANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPASIPVHPCGRYRHNTVVFIL 653
Query: 178 QAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEG- 236
EH+L L +HRLDRL SGLL+ R A +A QI +V K Y+ RV G FP+G
Sbjct: 654 AKEHNLKNLRTIHRLDRLTSGLLLFGRTAERARELELQIRTRQVQKEYVCRVEGRFPDGT 713
Query: 237 ---EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPIT 293
+ +DV ++Y + + KGK T F RI G+ SIVLC+P+T
Sbjct: 714 VECNEKIDV-VSYKIGVCKVSP-----------KGKDCKTTFKRIGEVGSDSIVLCKPLT 761
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GR HQIRVHLQY GYPI+ND LY
Sbjct: 762 GRMHQIRVHLQYLGYPISNDPLY 784
>gi|390468784|ref|XP_002753587.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
[Callithrix jacchus]
Length = 666
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/269 (41%), Positives = 166/269 (61%), Gaps = 15/269 (5%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
+Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +A++ GR+ ++E
Sbjct: 253 NYYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAIRAGRLHLNE 312
Query: 112 EMVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRK 170
E V ++ +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R
Sbjct: 313 EPVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRH 372
Query: 171 NTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
NTV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV
Sbjct: 373 NTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVE 432
Query: 231 GVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIV 287
G FP E + ++Y R + GK T F R+S NG S+V
Sbjct: 433 GEFPNEEVTCKEPILVVSYKVGVCRVDPQ-----------GKPCETVFQRLSYNGHSSVV 481
Query: 288 LCEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 482 QCRPLTGRTHQIRVHLQFLGHPILNDPIY 510
>gi|195051252|ref|XP_001993060.1| GH13297 [Drosophila grimshawi]
gi|193900119|gb|EDV98985.1| GH13297 [Drosophila grimshawi]
Length = 562
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/264 (43%), Positives = 158/264 (59%), Gaps = 8/264 (3%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PY F F + K RW G+ I+++F+ EF+ P + Y +++ G + V+ E
Sbjct: 144 YYIENGLRKVYPYSFTFTTFTKGRWVGEGILNVFSREFRAHPAEEYKRSIEAGSLTVNHE 203
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP+ Y +K + +++ +HRHE PV A ++I+ + D+L V KP S+PVHPCG+YR NT
Sbjct: 204 KVPIDYRLKHNDLLANTVHRHEVPVTAHPITIVHMDDDILVVNKPASIPVHPCGRYRHNT 263
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
++ IL E ++ L +HRLDRL SGLL+ R A KA QQI +V K Y+ V G
Sbjct: 264 MIFILAKEFNMRNLRTIHRLDRLTSGLLLFGRTAEKAREMEQQIRNRQVQKEYVCCVEGC 323
Query: 233 FPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPI 292
FP+G NI N + + G + KGK T F R+ G +SIV C+P+
Sbjct: 324 FPDG------NIECNEPIEVVSYKIG--VCKVSPKGKDCKTTFKRLGQVGDYSIVQCKPL 375
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGR HQIRVHLQY GYPI ND LY
Sbjct: 376 TGRMHQIRVHLQYLGYPIVNDPLY 399
>gi|260818260|ref|XP_002604301.1| hypothetical protein BRAFLDRAFT_88590 [Branchiostoma floridae]
gi|229289627|gb|EEN60312.1| hypothetical protein BRAFLDRAFT_88590 [Branchiostoma floridae]
Length = 369
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 179/327 (54%), Gaps = 30/327 (9%)
Query: 57 DGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPV 116
+G R V+PY+F F + K RW G+T++D+F+ EF+ P ++Y A+K GR+ ++ E V +
Sbjct: 11 NGLRKVQPYFFTFEAFAKGRWLGRTVMDIFSSEFRAHPPEHYEKAIKLGRLLLNGECVKL 70
Query: 117 SYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGI 176
+K + + + +HRHEPPV+A V I+++ D++ + KP S+PVHPCG YR N+V+ +
Sbjct: 71 DTVLKDNDFMQNTVHRHEPPVVADPVQIVEETDDLVVINKPASMPVHPCGGYRHNSVIFV 130
Query: 177 LQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEG 236
L EH L P+HRLDRL SG+LI A+N QI+ +V K Y+ARV G FPE
Sbjct: 131 LGKEHGFQNLHPIHRLDRLTSGILIFAKNLETKHRLDAQIKGREVKKVYLARVEGEFPEK 190
Query: 237 EQVVD--VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITG 294
+ + + R E GK A T F R+S +G S+V C P TG
Sbjct: 191 AECDKPIFAVKHKLGVCRVCPE-----------GKPAKTTFERVSFDGKSSVVRCFPETG 239
Query: 295 RTHQIRVHLQYTGYPIANDMLYLCEHVTHREGM---------SADRAAAYSHHSPPPVSS 345
R HQIRVHLQY G+PI ND LY G SA ++ + H+P S+
Sbjct: 240 RMHQIRVHLQYLGHPIVNDPLYNSTAWGANRGKGGIDSTSDHSARTVSSETEHAPSEQST 299
Query: 346 DKSESSSEDFS--------IDPMCTNC 364
D S++ S +DP+C C
Sbjct: 300 DLDPKDSDEGSKVKGQGATVDPICDEC 326
>gi|383864657|ref|XP_003707794.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Megachile rotundata]
Length = 527
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/267 (42%), Positives = 159/267 (59%), Gaps = 14/267 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+++FA EF+ P + Y ++ G + V+ +
Sbjct: 110 YYVENGLRKVYPYYFTFTTFTKGRWVGEKILEVFAREFRAHPAEEYERCIRAGTLTVNYQ 169
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
V V Y ++ + +++ +HRHE PV + ++++ + DV+ V KP S+PVHPCG+YR NT
Sbjct: 170 KVDVDYRLRHNDLLANVVHRHEVPVTSEPITVIHMDEDVVVVNKPASIPVHPCGRYRHNT 229
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E++L L +HRLDRL SG+L+ R KA QI +V K+Y+ RV G
Sbjct: 230 VVFILAKEYNLKNLRTIHRLDRLTSGILLFGRTPKKARQMEHQIRNRQVHKQYVCRVEGE 289
Query: 233 FPEGEQVVDVNI---NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLC 289
FPE E V I +Y + + KGK T+F R+S NG S+VLC
Sbjct: 290 FPEEEVVCSEPIEVVSYKIGVCKVSE-----------KGKDCVTRFKRLSYNGKSSVVLC 338
Query: 290 EPITGRTHQIRVHLQYTGYPIANDMLY 316
+P TGR HQIRVHLQY GYP+ ND LY
Sbjct: 339 KPQTGRMHQIRVHLQYLGYPVVNDPLY 365
>gi|291403226|ref|XP_002717836.1| PREDICTED: RNA pseudouridylate synthase domain containing 2
[Oryctolagus cuniculus]
Length = 561
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 165/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +A++ GR+ ++EE
Sbjct: 150 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYQAALRAGRLHLNEE 209
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 210 PVQDLSIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENDDVVVVDKPSSIPVHPCGRFRHN 269
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 270 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 329
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R +GK T F R+S NG S+V
Sbjct: 330 EFPVEEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGHSSVVR 378
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 379 CRPLTGRTHQIRVHLQFLGHPILNDPIY 406
>gi|328786842|ref|XP_624656.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Apis mellifera]
Length = 535
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/267 (42%), Positives = 159/267 (59%), Gaps = 14/267 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+++FA EF+ P + Y ++ G + V+ +
Sbjct: 110 YYVENGLRKVYPYYFTFTTFTKGRWVGEKILEVFAREFRAHPAEEYERCIRAGTLTVNYQ 169
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
V V Y ++ + +++ +HRHE PV + ++++ + DV+ V KP S+PVHPCG+YR NT
Sbjct: 170 KVDVDYRLRHNDLLANVVHRHEVPVTSEPITVIHMDEDVVVVNKPASIPVHPCGRYRHNT 229
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E++L L +HRLDRL SG+L+ R KA QI +V K+Y+ RV G
Sbjct: 230 VVFILAKEYNLKNLRTIHRLDRLTSGILLFGRTPKKARQMEHQIRNRQVHKQYVCRVEGE 289
Query: 233 FPEGEQVVDVNI---NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLC 289
FPE E V I +Y + + KGK T+F R+S NG S+VLC
Sbjct: 290 FPEEEVVCSEPIEVVSYKIGVCKISE-----------KGKDCVTRFKRLSYNGKSSVVLC 338
Query: 290 EPITGRTHQIRVHLQYTGYPIANDMLY 316
+P TGR HQIRVHLQY GYP+ ND LY
Sbjct: 339 KPQTGRMHQIRVHLQYLGYPVVNDPLY 365
>gi|426378669|ref|XP_004056035.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
isoform 1 [Gorilla gorilla gorilla]
Length = 545
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 166/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR++++E+
Sbjct: 133 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVRAGRLKLNEK 192
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 193 PVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 252
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 253 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYLCRVEG 312
Query: 232 VFPEGEQVVDVNI---NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E +I +Y R +GK T F R+S NG S+V
Sbjct: 313 EFPTEEVTCKESILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGQSSVVR 361
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 362 CRPLTGRTHQIRVHLQFLGHPILNDPIY 389
>gi|47230110|emb|CAG10524.1| unnamed protein product [Tetraodon nigroviridis]
Length = 516
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 162/268 (60%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V PYYFEF ++ K RW GKT++++F EF+ DYY A K GRI+++E+
Sbjct: 88 YYFEGGLRKVHPYYFEFKTYCKGRWIGKTLLEVFKSEFRAESIDYYQKAAKEGRIRLNEQ 147
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S ++++ + + +HRHEPPV+ + +L + +VL V KP S+PVHPCG++R N
Sbjct: 148 AVDDLSLVLRNNDHMKNTVHRHEPPVVGKPLEVLVDDGEVLVVDKPASIPVHPCGRFRHN 207
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL E ++ L VHRLDRL SG+L+ AR + Q + K+ K Y+ RV G
Sbjct: 208 TVIFILGKELGISELHTVHRLDRLTSGVLLFARTLETSKKLDQLVRDRKLEKEYVCRVEG 267
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FPE E + + + +++ R KGK T F R+S NG S+V
Sbjct: 268 EFPEEEVICEQPILVVSFKVGLCRVDP-----------KGKECRTVFQRLSFNGKTSVVR 316
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQY G+PI ND +Y
Sbjct: 317 CLPVTGRTHQIRVHLQYLGFPILNDPIY 344
>gi|355762227|gb|EHH61909.1| RNA pseudouridylate synthase domain-containing protein 2 [Macaca
fascicularis]
Length = 545
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/268 (42%), Positives = 167/268 (62%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+ ++E+
Sbjct: 133 YYFEGGLRKVRPYYFDFQTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVQAGRLHLNEK 192
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 193 PVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 252
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 253 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 312
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R DT +GK T F R+S NG S+V
Sbjct: 313 EFPTEEVTCKEPILVVSYKVGVCRV---------DT--RGKPCETVFQRLSYNGQSSVVR 361
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 362 CRPLTGRTHQIRVHLQFLGHPILNDPIY 389
>gi|194376328|dbj|BAG62923.1| unnamed protein product [Homo sapiens]
Length = 538
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/268 (41%), Positives = 166/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ + RW G +++ +F+ EF+ +P YY +AV+ GR+Q++E+
Sbjct: 126 YYFEGGLRKVRPYYFDFRTYCEGRWVGHSLLHVFSTEFRAQPLAYYEAAVRAGRLQLNEK 185
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 186 PVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 245
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 246 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 305
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R +GK T F R+S NG S+V
Sbjct: 306 EFPTEEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGQSSVVR 354
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 355 CRPLTGRTHQIRVHLQFLGHPILNDPIY 382
>gi|297479512|ref|XP_002690866.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
[Bos taurus]
gi|296483299|tpg|DAA25414.1| TPA: RNA pseudouridylate synthase domain containing 2 [Bos taurus]
Length = 518
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 164/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F EF+ +P YY +AV+ GR+ ++EE
Sbjct: 106 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFGTEFRAQPLAYYEAAVRAGRLHLNEE 165
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 166 PVQDLSIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 225
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 226 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVVG 285
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R + GK + F R+S NG S+V
Sbjct: 286 EFPTEEVTCKEPILVVSYKVGVCRVDPQ-----------GKPCESVFQRLSYNGHSSVVR 334
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 335 CRPLTGRTHQIRVHLQFLGHPILNDPIY 362
>gi|194670657|ref|XP_583460.4| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
isoform 1 [Bos taurus]
Length = 505
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 164/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F EF+ +P YY +AV+ GR+ ++EE
Sbjct: 93 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFGTEFRAQPLAYYEAAVRAGRLHLNEE 152
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 153 PVQDLSIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 212
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 213 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVVG 272
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R + GK + F R+S NG S+V
Sbjct: 273 EFPTEEVTCKEPILVVSYKVGVCRVDPQ-----------GKPCESVFQRLSYNGHSSVVR 321
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 322 CRPLTGRTHQIRVHLQFLGHPILNDPIY 349
>gi|385304786|gb|EIF48791.1| drap deaminase [Dekkera bruxellensis AWRI1499]
Length = 642
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 112/265 (42%), Positives = 162/265 (61%), Gaps = 6/265 (2%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
+YI R ++PYYF +++H K RW G+ I+D+F+ EF+ P YYV+A+ GR+ ++
Sbjct: 102 NYIIDGPLRRLEPYYFTYMTHCKERWIGRKILDVFSTEFRLYPRSYYVNALNXGRVSINN 161
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
E+ + + + ISH +HRHEPPV + + ++ ++ + + + KP +PVHP G+YR N
Sbjct: 162 EVASIDSVLHNGDLISHRMHRHEPPVTSQPIRVIHEDKNYVVIDKPSGIPVHPTGRYRHN 221
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV +LQ EH + P +R DRL SGL++L +N AD + + +V K YIA+V G
Sbjct: 222 TVTFVLQKEHGIKA-HPCNRXDRLTSGLMLLGKNGKAADRMSRILRERRVSKEYIAKVIG 280
Query: 232 VFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEP 291
FP E+ + V+ R + D GK A T F RIS +G SIVLC+P
Sbjct: 281 EFPATEEGIVVDKPLATIDPRLAFNAVDE-----EHGKPAKTYFKRISCDGETSIVLCKP 335
Query: 292 ITGRTHQIRVHLQYTGYPIANDMLY 316
+TGRTHQIRVHLQY G+PIAND LY
Sbjct: 336 LTGRTHQIRVHLQYLGHPIANDPLY 360
>gi|426234077|ref|XP_004011031.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
[Ovis aries]
Length = 510
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 164/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F EF+ +P YY +AV+ GR+ ++EE
Sbjct: 98 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFGTEFRAQPLAYYEAAVRAGRLHLNEE 157
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 158 PVQDLSIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 217
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 218 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVVG 277
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R + GK + F R+S NG S+V
Sbjct: 278 EFPTEEVTCKEPILVVSYKVGVCRVDPQ-----------GKPCESVFQRLSYNGHSSVVR 326
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 327 CRPLTGRTHQIRVHLQFLGHPILNDPIY 354
>gi|440911676|gb|ELR61317.1| RNA pseudouridylate synthase domain-containing protein 2 [Bos
grunniens mutus]
Length = 551
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 164/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F EF+ +P YY +AV+ GR+ ++EE
Sbjct: 139 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFGTEFRAQPLAYYEAAVRAGRLHLNEE 198
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 199 PVQDLSIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 258
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 259 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVVG 318
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R + GK + F R+S NG S+V
Sbjct: 319 EFPTEEVTCKEPILVVSYKVGVCRVDPQ-----------GKPCESVFQRLSYNGHSSVVR 367
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 368 CRPLTGRTHQIRVHLQFLGHPILNDPIY 395
>gi|189237270|ref|XP_973027.2| PREDICTED: similar to ribosomal pseudouridine synthase [Tribolium
castaneum]
Length = 487
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 114/268 (42%), Positives = 160/268 (59%), Gaps = 16/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+D+FA EF+ P + Y ++ G + V+ +
Sbjct: 39 YYIENGLRKVYPYYFTFTTFTKGRWVGERILDVFAREFRAHPAEEYERCIQAGTLTVNYD 98
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VP+ Y +K + +++ +HRHE PV + ++I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 99 KVPIDYKLKHNDLLANVVHRHEVPVTSQPITIVHMDEDIVVVNKPASIPVHPCGRYRHNT 158
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E++L L +HRLDRL SGLL+ R+ KA QI V K Y+ RV G
Sbjct: 159 VVFILAKEYNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEHQIRNRLVQKEYVCRVEGE 218
Query: 233 FP----EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E ++ ++V ++Y + + KGK T F ++ NG SIVL
Sbjct: 219 FPDEIIECKEPIEV-VSYKIGVCKVSP-----------KGKDCNTIFQKLGFNGKTSIVL 266
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C+P TGR HQIRVHLQY GYP+ ND LY
Sbjct: 267 CKPKTGRMHQIRVHLQYLGYPVVNDPLY 294
>gi|332235181|ref|XP_003266785.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
isoform 1 [Nomascus leucogenys]
Length = 545
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/268 (41%), Positives = 165/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
+ F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+ ++E+
Sbjct: 133 FYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVRAGRLHLNEK 192
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 193 PVQDLNVVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 252
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 253 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 312
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R +GK T F R+S NG S+V
Sbjct: 313 EFPTEEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGQSSVVR 361
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 362 CRPLTGRTHQIRVHLQFLGHPILNDPIY 389
>gi|340380169|ref|XP_003388596.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Amphimedon queenslandica]
Length = 427
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/275 (41%), Positives = 170/275 (61%), Gaps = 12/275 (4%)
Query: 48 PVKED--YIFRD--GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVK 103
P+K + Y FR+ G R+V PYYF+F +H K RW G+ + D+F+EEF+ +YY A+
Sbjct: 34 PLKNESIYYFRNVSGLRHVIPYYFKFSTHAKGRWVGRKVYDVFSEEFQSEKPEYYERAIN 93
Query: 104 CGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVH 163
G++ V+ ++ + +K + ++H +HRHEPPV + ++I+ ++L V KPPS+PVH
Sbjct: 94 LGKVTVNGKVATMETVIKDNDVVTHLVHRHEPPVSSQSINIITNNKELLVVNKPPSIPVH 153
Query: 164 PCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIK 223
PCG+YR+NT++ IL+ E+D+ ++ +HRLD+ SGLL+ + SK +QI +V K
Sbjct: 154 PCGRYRQNTMINILKNEYDIDNIYTIHRLDKCTSGLLLFGKRISKVQEIEEQIRDRQVHK 213
Query: 224 RYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT 283
Y+A VNG F I N S + + G + D P+ GK T FT + + T
Sbjct: 214 EYLALVNGHFNHPG-----TIECNESIKVLSHKVGVCMVD-PVNGKDCSTSFTLLHYDKT 267
Query: 284 H--SIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ S+V CEP TGR HQIRVHLQY G+PI ND LY
Sbjct: 268 NNRSLVKCEPKTGRMHQIRVHLQYLGFPIINDPLY 302
>gi|402873974|ref|XP_003900823.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
isoform 1 [Papio anubis]
Length = 545
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 166/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+ ++E+
Sbjct: 133 YYFEGGLRKVRPYYFDFQTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVQAGRLHLNEK 192
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 193 PVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 252
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL E L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 253 TVIFILGKERQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 312
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R DT +GK T F R+S NG S+V
Sbjct: 313 EFPTEEVTCKEPILVVSYKVGVCRV---------DT--RGKPCETVFQRLSYNGQSSVVR 361
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 362 CRPLTGRTHQIRVHLQFLGHPILNDPIY 389
>gi|346468211|gb|AEO33950.1| hypothetical protein [Amblyomma maculatum]
Length = 493
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 157/272 (57%), Gaps = 22/272 (8%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
+Y F+ G R V PYYF + + K RW G +VD+F EF+ + Y +A+K G + V+
Sbjct: 85 EYYFQRGLRKVYPYYFTYTTFCKGRWVGHLLVDVFTREFRAHSREVYENAIKDGLVTVNS 144
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
+ V Y +K + +++ LHRHE PV+ + IL D++ + KPPS+PVHPCG+YR N
Sbjct: 145 KRVGTDYRLKDNDLLANTLHRHEVPVLGAPIKILHNSHDMIVIDKPPSIPVHPCGRYRHN 204
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
+V+ IL EH L L VHRLDRL SGLL+++R+ +A +I+ +V K Y+ RV G
Sbjct: 205 SVIFILAKEHGLQNLHTVHRLDRLTSGLLLMSRSVDRARELENEIKGRQVSKEYVCRVEG 264
Query: 232 VFP-------EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH 284
FP E +V+ I GK T+F ++S NG
Sbjct: 265 CFPDDVVTCCEPIEVISHKIGVCGVGAH---------------GKECKTEFKKLSYNGKS 309
Query: 285 SIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
S+VLC+P+TGR HQIRVHLQ+ GYPI ND LY
Sbjct: 310 SVVLCKPLTGRMHQIRVHLQFLGYPIVNDPLY 341
>gi|432936869|ref|XP_004082319.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Oryzias latipes]
Length = 541
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 175/317 (55%), Gaps = 23/317 (7%)
Query: 12 ANDSNSNGNGNGNGNGNGNGNSSNNMEIVWQTPANPPV--------KEDYIFRDGRRNVK 63
A DS +N +G G + NP V + Y F G R V
Sbjct: 83 AEDSEANVSGKKRRGAGGKTLRPGERYVPPPQKRNPGVSFSQEHFSETSYYFDGGLRKVH 142
Query: 64 PYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP-VSYTVKS 122
PYYF+F ++ K RW GK+++++F EF+ +YY A K GRI+++E V +S +K+
Sbjct: 143 PYYFDFKTYCKGRWIGKSLLEVFESEFRAETVEYYQQAAKEGRIRLNEAPVEDLSVVLKN 202
Query: 123 SQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHD 182
+ + + +HRHEPPV+ + IL + VL V KP S+PVHPCG++R NTV+ IL E+
Sbjct: 203 NDHMRNTVHRHEPPVVGTPLEILVDDGQVLVVDKPASIPVHPCGRFRHNTVIFILGKEYG 262
Query: 183 LAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD- 241
++ L VHRLDRL SG+L+ AR + + + ++ K Y+ RV G FPEGE V +
Sbjct: 263 VSELHTVHRLDRLTSGVLLFARTVETSKKLDKMVRDREIEKEYVCRVEGEFPEGELVCEE 322
Query: 242 --VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
+ +++ R KGK T F R+S NG S+V C P+TGRTHQI
Sbjct: 323 PILVVSFKVGLCRVDP-----------KGKECRTVFQRLSFNGKTSVVRCSPLTGRTHQI 371
Query: 300 RVHLQYTGYPIANDMLY 316
RVHLQ+ G+PI ND +Y
Sbjct: 372 RVHLQFLGFPILNDPIY 388
>gi|410898489|ref|XP_003962730.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Takifugu rubripes]
Length = 525
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 161/268 (60%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV-DE 111
Y F G R V PYYFEF ++ K RW GKT++++F EF+ DYY A K GRI++ D+
Sbjct: 83 YYFEGGLRKVHPYYFEFKTYCKGRWIGKTLLEVFKSEFRAESIDYYQKAAKEGRIRLNDQ 142
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
M +S ++++ + + +HRHEPPV+ + +L + +VL V KP S+PVHPCG++R N
Sbjct: 143 PMEDLSVVLRNNDHMKNTVHRHEPPVVGKPLEVLVDDGEVLVVDKPASIPVHPCGRFRHN 202
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL E ++ L VHRLDRL SG+L+ AR + Q + ++ K Y+ RV G
Sbjct: 203 TVIFILGKERGISELHTVHRLDRLTSGVLLFARTLETSQKLDQLVRDRQLEKEYVCRVEG 262
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+ E + + + +++ R KGK T F R++ NG S+V
Sbjct: 263 EFPKEEVICEQPILVVSFKIGLCRVDP-----------KGKECRTVFQRLNFNGKTSVVR 311
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQY G+PI ND +Y
Sbjct: 312 CLPLTGRTHQIRVHLQYLGFPILNDPIY 339
>gi|395746554|ref|XP_003778473.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
isoform 2 [Pongo abelii]
Length = 545
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/268 (40%), Positives = 164/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +A++ GR+ ++E+
Sbjct: 133 YYLEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAIRAGRLHLNEK 192
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 193 PVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 252
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 253 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 312
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R +GK T F R+S NG S+V
Sbjct: 313 EFPTEEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGQSSVVR 361
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 362 CRPLTGRTHQIRVHLQFLGHPILNDPIY 389
>gi|427789419|gb|JAA60161.1| Putative rna pseudouridylate synthase [Rhipicephalus pulchellus]
Length = 487
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/265 (41%), Positives = 155/265 (58%), Gaps = 8/265 (3%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
+Y F+ G R V PYYF + + K RW G +VD+F EF+ + Y +A+K G + V+
Sbjct: 76 EYYFQHGLRKVYPYYFTYTTFCKGRWVGHLLVDVFTREFRAHSREVYENAIKAGLVTVNN 135
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
+ V V Y +K + +++ LHRHE PV+ + IL D++ + KPPS+PVHPCG+YR N
Sbjct: 136 KPVGVDYRLKDNDLLANTLHRHEVPVLGAPIKILHDADDMVVIDKPPSIPVHPCGRYRHN 195
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
+V+ IL EH L L VHRLDRL SGLL+++R+ +A +I+ V K Y+ RV G
Sbjct: 196 SVIFILAKEHGLQNLHTVHRLDRLTSGLLLMSRSVDRARELENEIKGRLVSKEYLCRVEG 255
Query: 232 VFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEP 291
FP+ + I + GK T+F ++S NG S+VLC+P
Sbjct: 256 CFPDDAVICCEPI--------EVISHKIGVCGVGAHGKECKTEFKKLSYNGKSSVVLCKP 307
Query: 292 ITGRTHQIRVHLQYTGYPIANDMLY 316
TGR HQIRVHLQ+ GYPI ND LY
Sbjct: 308 HTGRMHQIRVHLQFLGYPIVNDPLY 332
>gi|395837904|ref|XP_003791868.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudouridylate synthase
domain-containing protein 2 [Otolemur garnettii]
Length = 547
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 110/266 (41%), Positives = 164/266 (61%), Gaps = 15/266 (5%)
Query: 55 FRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV 114
F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY ++V+ GR++++EE V
Sbjct: 137 FEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPMAYYEASVRAGRLRLNEEPV 196
Query: 115 P-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTV 173
+S +K + + + +HRHEPPV A + +L + D++ V KP S+PVHPCG++R NTV
Sbjct: 197 QDLSIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDMVVVDKPSSIPVHPCGRFRHNTV 256
Query: 174 VGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVF 233
+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G F
Sbjct: 257 IFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEGEF 316
Query: 234 PEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCE 290
P E + ++Y R GK T F R+S NG S+V C
Sbjct: 317 PTEEVTCKEPILVMSYKVGVCRVDPH-----------GKPCETVFQRLSYNGHSSVVRCR 365
Query: 291 PITGRTHQIRVHLQYTGYPIANDMLY 316
P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 366 PLTGRTHQIRVHLQFLGHPILNDPIY 391
>gi|159466816|ref|XP_001691594.1| pseudouridine synthase [Chlamydomonas reinhardtii]
gi|158278940|gb|EDP04702.1| pseudouridine synthase [Chlamydomonas reinhardtii]
Length = 694
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 174/311 (55%), Gaps = 35/311 (11%)
Query: 40 VWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYV 99
V + A+ P EDY+F G R VKPYYF+F +VK R G+ ++ L AEEF DYY
Sbjct: 84 VIEDAASAPHPEDYVFVRGLRLVKPYYFDFKCYVKQRQDGRPLMQLMAEEFPMLSEDYYT 143
Query: 100 SAVKCGRIQVDEEMVP----------------VSYTVKSSQKISHFLHRHEPPVMAWDVS 143
AV GR++V E VP S +++ I HF+HRHEPPV+ DV
Sbjct: 144 QAVATGRLRV-EGKVPGGGRGSGGGGGGGGWAASKPLRAGMCIRHFIHRHEPPVLQGDVE 202
Query: 144 ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH-DLAPLFPVHRLDRLVSGLLIL 202
IL D + V KP +PVH GQYRKNTV+G++QA H L PL+P +RLD+ VSG+L+L
Sbjct: 203 ILGVSDDFVAVNKPACMPVHTVGQYRKNTVMGVVQATHPGLWPLYPTYRLDKPVSGVLLL 262
Query: 203 ARNASKADLFRQQIEAGKVIKRYIARVNGVFPE------GEQVVDVNINYNASAGRSTAE 256
AR+++ A R +E K Y+ARV GVFP+ G VVD + + A +T
Sbjct: 263 ARSSAVAGRMRVLLEERGCAKAYVARVQGVFPDTSSLSGGVMVVDTPLGWEAKTNHATPV 322
Query: 257 SGDSL---GDTPL------KGKAACTKFTRIST--NGTHSIVLCEPITGRTHQIRVHLQY 305
L G T L K A T F R+S +G S+V P TGRTHQIRVHLQ+
Sbjct: 323 PASGLAADGATALPPALVASAKPAETHFRRLSVSPDGLTSVVEAVPKTGRTHQIRVHLQH 382
Query: 306 TGYPIANDMLY 316
G+PIAND Y
Sbjct: 383 VGHPIANDTQY 393
>gi|66813276|ref|XP_640817.1| pseudouridine synthase family protein [Dictyostelium discoideum
AX4]
gi|60468845|gb|EAL66845.1| pseudouridine synthase family protein [Dictyostelium discoideum
AX4]
Length = 578
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 115/298 (38%), Positives = 176/298 (59%), Gaps = 17/298 (5%)
Query: 55 FRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV 114
++D R+++PY + F K RW G++I+D+F++EF D Y+ +K G I+V++++V
Sbjct: 153 YKDNLRHIEPYQYTFKVFAKERWFGQSILDMFSQEFSTNSRDVYLKKIKRGLIKVNDQLV 212
Query: 115 PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV 174
SY +K + I H +HRHEPPV + I+ + +V+ V KP S+PVHPCG++R N+++
Sbjct: 213 SPSYKIKLNDTIIHTVHRHEPPVTGESIKIVSLDENVVVVDKPSSIPVHPCGRFRHNSLM 272
Query: 175 GILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFP 234
IL +EH + L+ VHRLDRL SGLL+LAR A+ QI++G V K+Y+A+V G FP
Sbjct: 273 YILASEHGINQLYGVHRLDRLTSGLLLLARTPDSANKKANQIQSGLVSKQYLAKVIGKFP 332
Query: 235 EGEQVVDVNINYNASAGRST-AESGDSLGDTPL--------------KGKAACTKFTRIS 279
+ + + ++N E G + D P+ GK + T S
Sbjct: 333 GSDTINSSSSSFNEQIKLCKHLEDGTFIIDQPIVIQSMRLGINHVGVGGKPSITHIKLFS 392
Query: 280 TNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAY 335
+ + SIVLC P TGRTHQIRVHL++ G+PIAND LY E + +++D +Y
Sbjct: 393 YDQSTNTSIVLCTPKTGRTHQIRVHLKWLGFPIANDPLYNNEFKESFKALTSDGKTSY 450
>gi|50555826|ref|XP_505321.1| YALI0F12199p [Yarrowia lipolytica]
gi|49651191|emb|CAG78128.1| YALI0F12199p [Yarrowia lipolytica CLIB122]
Length = 605
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/271 (42%), Positives = 167/271 (61%), Gaps = 9/271 (3%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y DG R V PYY+ ++++ K RW + ++D+FA EF+ R YY A++ G++ ++ +
Sbjct: 81 YELSDGLRRVSPYYYTYLTYCKQRWRDRQLLDIFANEFRDRDESYYRWAIENGQVLLNGK 140
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
+ V V++ I H H+HEPPV ++ I+ ++ D++ + KP +PVHP G+YR NT
Sbjct: 141 VAQVDSVVRNGDAIQHRSHKHEPPVTDQEIDIVHEDDDLVVIDKPSGMPVHPAGRYRFNT 200
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
V IL+ + L + P +RLDRL SGL+ +A+N AD F Q+ +V K+Y+ARV G
Sbjct: 201 AVNILKHVNGLH-VHPCNRLDRLTSGLMFMAKNPKSADKFGAQLRDRQVQKQYVARVVGK 259
Query: 233 FPEGEQVVDVN-------INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHS 285
FP+GE VD N I +N + + +L D + + A T F RIS +G S
Sbjct: 260 FPDGEISVDENLCTLDPKIGFNIVTTKVDRDHHRALMDRATE-REAKTVFKRISYDGETS 318
Query: 286 IVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
IVLC+P TGRTHQIRVHLQ+ G+PIAND LY
Sbjct: 319 IVLCKPYTGRTHQIRVHLQFLGHPIANDPLY 349
>gi|308809005|ref|XP_003081812.1| RNA pseudouridylate synthases (ISS) [Ostreococcus tauri]
gi|116060279|emb|CAL55615.1| RNA pseudouridylate synthases (ISS) [Ostreococcus tauri]
Length = 441
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 129/318 (40%), Positives = 183/318 (57%), Gaps = 32/318 (10%)
Query: 29 GNGNSSNNMEIVWQTP---ANPPVKEDYIFRD---GRRNVKPYYFEFISHVKNRWAGKTI 82
GN N + V + A+PP E D G R PY F+F+ VK RWAG+ +
Sbjct: 31 GNDREHNAFDAVLEANDLFAHPPDAERDWLVDATVGIRTCAPYDFDFVCGVKARWAGERL 90
Query: 83 VDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-------------VKSSQKISHF 129
++FA EF RP +YY A + GR++++E + + + Q++ HF
Sbjct: 91 CEMFAREFPMRPIEYYREAYRSGRLRLEENGRAAASSDGQNRETHEDGPILVGGQRVRHF 150
Query: 130 LHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA-EHDLAPLFP 188
+HRHEPP +A DV +L DV+ VCKP ++PVHP GQYR+NTV+ +L + DL LFP
Sbjct: 151 IHRHEPPTIAEDVRVLSVTDDVVAVCKPATMPVHPTGQYRRNTVLALLASTRRDLGRLFP 210
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQ---VVDVNIN 245
+HRLD+ VSGLL+LAR++ A+ RQ++EA ++ K Y+ARV G F + +D +
Sbjct: 211 IHRLDKNVSGLLLLARSSKAANAMRQKMEAREMRKEYVARVKGSFNASDPTPVTIDEALG 270
Query: 246 YNA----SAGRSTAESGDSLGDTPLKG-KAACTKFTRIST--NGTHSIVLCEPITGRTHQ 298
++A + R + D L + LK KAA TKF + +GT S+V CEP TGR+HQ
Sbjct: 271 FDAKNRVALWREKPGTRD-LDERALKSFKAASTKFVWLQDLPDGT-SLVQCEPFTGRSHQ 328
Query: 299 IRVHLQYTGYPIANDMLY 316
IR HL GY IAND+ Y
Sbjct: 329 IRAHLAIAGYAIANDVAY 346
>gi|443721451|gb|ELU10743.1| hypothetical protein CAPTEDRAFT_92693, partial [Capitella teleta]
Length = 429
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 157/259 (60%), Gaps = 8/259 (3%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G R V PYYF F + K RW G+T++D+F +EFK +Y + A++ G+++V+ + V V
Sbjct: 6 GLRKVYPYYFTFTVYAKGRWLGQTLLDVFTQEFKSTGREYNIHAIESGKLRVNGQSVNVD 65
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGIL 177
Y +K + IS HRHE PV A + I+ D+L V KP S+P+HPCG+YR N++V IL
Sbjct: 66 YKLKHNDFISSITHRHEVPVTADPIEIIANTEDILVVNKPSSIPMHPCGRYRHNSLVYIL 125
Query: 178 QAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237
+++L L P++RLDRL SG+ I+AR SKA + IE KV K Y+ +V GVFP
Sbjct: 126 AKDYNLHNLRPIYRLDRLTSGVTIIARTESKAKELHKLIEGRKVRKEYLCKVEGVFP--- 182
Query: 238 QVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTH 297
D I T G L GK + T F +ST+G SIV C+P TGRTH
Sbjct: 183 ---DERIECKEPLEVLTHSLG--LFKVGKNGKESWTTFELVSTDGETSIVRCQPHTGRTH 237
Query: 298 QIRVHLQYTGYPIANDMLY 316
QIRVHLQ+ G+PI ND +Y
Sbjct: 238 QIRVHLQFLGFPIVNDRIY 256
>gi|391348403|ref|XP_003748437.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Metaseiulus occidentalis]
Length = 426
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/284 (40%), Positives = 169/284 (59%), Gaps = 10/284 (3%)
Query: 34 SNNMEIVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGR 93
S N I A P ++Y F++G R V PY F+F H K RW G+T++D+F EF +
Sbjct: 2 SENRSIHSDHIATEPRGDEYYFQNGLRKVYPYTFQFKVHAKGRWFGRTLLDVFLNEFTTQ 61
Query: 94 PYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLT 153
+YY+ A+K G I+V E V ++Y +K + +++ +HRHE PV+ + I+ ++ ++L
Sbjct: 62 SEEYYLGAIKRGCIKVHGEHVDLTYRLKPNDFLTNEIHRHEVPVIGCPIKIIHEDENMLV 121
Query: 154 VCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFR 213
+ KPPS+PVHPC +YR NTV+ IL EH + L +HRLDRL SG+L+ A+N ++
Sbjct: 122 LDKPPSIPVHPCSRYRLNTVLKILSREHGIRNLHTLHRLDRLTSGVLMFAKNIERSHYMD 181
Query: 214 QQIEAGKVIKRYIARVNGVFPEGEQVVDVNIN-YNASAGRSTAESGDSLGDTPLKGKAAC 272
+ ++ K Y+ RV G FP+G+ VV+ I ++ G S G G+ +
Sbjct: 182 RLFCTRRLTKEYLCRVRGEFPDGQVVVNKPIKIFSFKIGVSGVGEG---------GRDST 232
Query: 273 TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F ++S NG S+VL P GR HQIRVHLQY G+PI D LY
Sbjct: 233 TIFEKLSFNGKSSVVLARPKEGRMHQIRVHLQYLGHPIVRDPLY 276
>gi|348531256|ref|XP_003453126.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Oreochromis niloticus]
Length = 490
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/268 (42%), Positives = 160/268 (59%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V PYYF+F ++ K RW GK+++D+F EF+ YY A K GRI+++E
Sbjct: 89 YYFEAGLRKVYPYYFDFKTYCKGRWIGKSLLDVFKNEFRAESIGYYQKAAKEGRIRLNET 148
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S ++++ + + +HRHEPPV+ + IL + +VL V KP S+PVHPCG++R N
Sbjct: 149 PVEDLSVVLRNNDHLRNTVHRHEPPVVGRPLEILVDDGEVLVVDKPASIPVHPCGRFRHN 208
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL E ++ L VHRLDRL SG+L+ AR + Q + ++ K Y+ RV G
Sbjct: 209 TVIFILGKEFGISELHTVHRLDRLTSGVLLFARTLETSKKLDQMVRDRQLEKEYVCRVEG 268
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FPE E + + + +++ R KGK T F R+S NG S+V
Sbjct: 269 EFPEDEVICEEPILVVSFKIGLCRVDP-----------KGKECRTVFQRLSFNGKTSVVR 317
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQY G+PI ND +Y
Sbjct: 318 CLPLTGRTHQIRVHLQYLGFPILNDPVY 345
>gi|198477421|ref|XP_002136622.1| GA24957 [Drosophila pseudoobscura pseudoobscura]
gi|198142914|gb|EDY71626.1| GA24957 [Drosophila pseudoobscura pseudoobscura]
Length = 540
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/260 (42%), Positives = 154/260 (59%), Gaps = 16/260 (6%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
Y +G R V PYYF F + K RW G+ I+D+F+ EF+ P + Y ++ G + V+
Sbjct: 289 SYYIENGLRKVYPYYFTFTTFTKGRWVGEKILDIFSREFRAHPSEEYERRIQAGTLTVNF 348
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
E VP+ Y +K + +++ +HRHE PV + I+ D++ V KP S+PVHPCG+YR N
Sbjct: 349 EKVPIDYRLKHNDLLANIVHRHEVPVTCQPIKIVHMNEDLVVVNKPASIPVHPCGRYRHN 408
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TVV IL E +L L +HRLDRL SGLL+ R+ KA QQI +V K YI RV G
Sbjct: 409 TVVFILAKEFNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEG 468
Query: 232 VFP----EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIV 287
+FP E ++ ++V ++Y + + +GK T F +IS NG S+V
Sbjct: 469 IFPDEIVECKEPIEV-VSYKIGVCKVSQ-----------RGKDCTTTFQKISQNGKTSVV 516
Query: 288 LCEPITGRTHQIRVHLQYTG 307
LC+P+TGR HQIRVHLQY G
Sbjct: 517 LCKPLTGRMHQIRVHLQYLG 536
>gi|330846924|ref|XP_003295235.1| hypothetical protein DICPUDRAFT_160487 [Dictyostelium purpureum]
gi|325074072|gb|EGC28238.1| hypothetical protein DICPUDRAFT_160487 [Dictyostelium purpureum]
Length = 533
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/281 (40%), Positives = 163/281 (58%), Gaps = 4/281 (1%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
++ ++D R+++PY F F K RW G+T++D+F EF D Y+ +K G I+V++
Sbjct: 163 NFYYKDSLRHIEPYQFTFKVFAKERWFGQTVLDMFTTEFSTNSRDVYLRKIKRGLIKVND 222
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
+MV + +K + I H +HRHEPPV + I+ + V+ + KP S+PVHPCG++R N
Sbjct: 223 KMVSPDFKIKLNDIILHSVHRHEPPVTGDKIKIVAMDDQVVVIDKPSSIPVHPCGRFRHN 282
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
V+ IL AEH + L+ VHRLDRL SGLL+LAR A QI++G V K+Y A+V G
Sbjct: 283 CVLFILAAEHGINELYGVHRLDRLTSGLLMLARTPDAAKKRASQIQSGDVSKQYFAKVVG 342
Query: 232 VFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN--GTHSIVLC 289
FP G + D + N G + GK + T F S + SIVLC
Sbjct: 343 KFPIGTDLPDGTVIVNQPIVIQNMRLG--INHVGEGGKPSVTHFKLYSYDEKSNQSIVLC 400
Query: 290 EPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSAD 330
P TGRTHQIRVHL++ GYPI ND LY + + +++D
Sbjct: 401 SPKTGRTHQIRVHLKWLGYPITNDPLYNNDFRDSFKALTSD 441
>gi|400598861|gb|EJP66568.1| RluA family pseudouridine synthase [Beauveria bassiana ARSEF 2860]
Length = 488
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 173/291 (59%), Gaps = 13/291 (4%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TPA Y F DG R VKPY+F + + K RW G+T++D+FA EF+ RP +YY +A+
Sbjct: 58 TPAGDLWPRPYYFEDGLRRVKPYHFTYNTWCKERWRGRTLIDIFACEFRDRPLEYYRAAM 117
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G I V++ MV Y V++ KISH LHRHEPPV A V I+ ++ D++ + KP VPV
Sbjct: 118 ELGDIFVNQRMVGPDYIVRNGDKISHTLHRHEPPVTAEPVGIIHEDDDMIVLNKPAGVPV 177
Query: 163 HPCGQYRKNTVVGILQAEH--DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
HP G+Y N+V+ I++++ D P +P +RLDRL SG++ + ++ A +I+
Sbjct: 178 HPAGRYNFNSVIEIMKSDRGKDFMP-YPCNRLDRLTSGIMFIGKSPKAAVELGVKIQERS 236
Query: 221 VIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLGDTPLKGKAA 271
V K Y+ARV G FP+GE V D + +N + G+S L P +
Sbjct: 237 VRKEYLARVLGEFPDGEVVCDMPVLQISPKLGLNRVRANGKSARTVFKKLAYYPPRTPNL 296
Query: 272 CTKFTRISTNGT-HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
+ +++ T +SIV C P+TGRTHQIRVHLQ+ GYPI ND +Y + V
Sbjct: 297 QSPDGQVTRKNTGYSIVRCLPVTGRTHQIRVHLQHLGYPIQNDPIYANQRV 347
>gi|326675673|ref|XP_693475.4| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Danio rerio]
Length = 599
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 162/268 (60%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V PYYF+F S+ K RW GKT++D+F +EF+ DYY +AVK GRI+++E
Sbjct: 169 YYFEGGLRKVHPYYFDFKSYCKGRWIGKTLLDVFKKEFRAESLDYYNAAVKEGRIKLNET 228
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K++ + + +HRHEPPV + +L + +V+ V KP S+PVHPCG+YR N
Sbjct: 229 PVDDLNVVLKNNDLLRNTVHRHEPPVCGQPLKLLVDDGEVVVVDKPSSLPVHPCGRYRHN 288
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL E L L VHRLDRL SG+L+ AR + + ++ K Y+ RV G
Sbjct: 289 TVIFILGKEKGLVGLHTVHRLDRLTSGVLLFARTLEVSKKLDVMVRERQLEKEYVCRVEG 348
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FPE E V + + +++ R KGK + T F R+S NG S+V
Sbjct: 349 EFPEAEVVCEEPILVVSFRVGLCRVDP-----------KGKESRTIFQRLSFNGRSSVVR 397
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 398 CRPLTGRTHQIRVHLQFLGFPILNDPIY 425
>gi|391348214|ref|XP_003748344.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Metaseiulus occidentalis]
Length = 465
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 108/265 (40%), Positives = 160/265 (60%), Gaps = 10/265 (3%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F++G R V PY F++ K RW G+T++D+F+ EF+ +YY A+K G+I+V+ E
Sbjct: 58 YYFQNGLRKVYPYMFQYQVFAKGRWVGRTVLDVFSTEFRAHSKEYYEEAIKSGQIRVNGE 117
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
V ++Y K + K+++ HRHE PV+ + I+ ++ ++L V KPPS+PVHPC +YR N+
Sbjct: 118 PVDLTYRFKDNDKVTNETHRHEVPVIGCPIKIIYEDKNMLVVDKPPSIPVHPCSRYRLNS 177
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
++ IL E+ + L +HRLDRL SG+L+ A+ ++ + I V K+Y+ RV G
Sbjct: 178 MLKILSEENGYSSLHTLHRLDRLTSGVLMFAKTKERSLFMDELIRTRHVTKQYLCRVRGE 237
Query: 233 FPEGEQVVDVNIN-YNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEP 291
FP+GE V I Y+ G S + G G+ T F ++S NG S+VL P
Sbjct: 238 FPDGEITVAKPIEVYSYKIGVSGVKEG---------GRDCTTIFEKLSFNGKSSVVLARP 288
Query: 292 ITGRTHQIRVHLQYTGYPIANDMLY 316
GR HQIRVHLQY G+PI D LY
Sbjct: 289 KQGRMHQIRVHLQYLGHPIVRDPLY 313
>gi|19113793|ref|NP_592881.1| tRNA pseudouridylate synthase (predicted) [Schizosaccharomyces
pombe 972h-]
gi|1175381|sp|Q09709.1|YA32_SCHPO RecName: Full=Uncharacterized protein C18B11.02c
gi|929888|emb|CAA90587.1| tRNA pseudouridylate synthase (predicted) [Schizosaccharomyces
pombe]
Length = 394
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 113/277 (40%), Positives = 168/277 (60%), Gaps = 9/277 (3%)
Query: 42 QTPANPPVKE-DYIFR-DGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYV 99
+ P P+K+ +Y+F+ DG R V PYY+E+I+ K RW GKT++++F EF+ R YY
Sbjct: 3 KRPKRDPLKDCEYVFKGDGLRRVPPYYYEYITFAKLRWYGKTLLEVFNTEFRDRESGYYE 62
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPS 159
A++ G+++V+ ++ V +++ +SH HRHEPPV V I+ ++ + + KP
Sbjct: 63 KAIRNGQVKVNNQIGNVDTLIENGYIVSHHAHRHEPPVSDQPVGIVHEDESYVVIDKPAG 122
Query: 160 VPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
VPVHP G+Y NTV+ IL E+ + L+P +RLDRL SGL+ +++ A+ R + +
Sbjct: 123 VPVHPTGRYNHNTVLHILMKENKCSLLYPCNRLDRLTSGLMFFSKSPKAAEEMRVHMISK 182
Query: 220 KVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRIS 279
+ K Y+ARV G FP +V+ A T L GK A T F RI+
Sbjct: 183 SLKKEYVARVIGEFPNSGEVI-------CDAPLLTVAPTLGLNRIHPDGKEASTVFKRIA 235
Query: 280 TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+G S+VLC+P+TGRTHQ+RVHLQY GYPIAND +Y
Sbjct: 236 FDGHTSLVLCKPLTGRTHQLRVHLQYLGYPIANDPIY 272
>gi|334318409|ref|XP_001381115.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
[Monodelphis domestica]
Length = 541
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/268 (39%), Positives = 163/268 (60%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G++++ +++ EF+ YY +A + GR++++E+
Sbjct: 132 YYFEGGLRKVRPYYFDFETYCKGRWVGRSLLHVYSTEFRAHSVAYYEAAAQAGRLRLNEQ 191
Query: 113 MV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V + +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 192 PVRDLGVILKDNDFLRNTVHRHEPPVTAEPIHLLAENDDVVVVDKPSSMPVHPCGRFRHN 251
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ +L EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 252 TVIFVLGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 311
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R +GK T F R+S NG S+V
Sbjct: 312 EFPSEEVTCKEPILVVSYKVGLCRVDP-----------RGKPCETVFQRLSYNGHSSVVR 360
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 361 CRPLTGRTHQIRVHLQFLGHPIINDPIY 388
>gi|156401575|ref|XP_001639366.1| predicted protein [Nematostella vectensis]
gi|156226494|gb|EDO47303.1| predicted protein [Nematostella vectensis]
Length = 418
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/266 (40%), Positives = 161/266 (60%), Gaps = 16/266 (6%)
Query: 55 FRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV 114
F G R+VKPYYF F SH K RW + ++D+F EEF+ YY A++ G+I V+ E V
Sbjct: 1 FSTGLRHVKPYYFTFTSHCKGRWLNRELLDIFREEFRSESISYYEKAIESGKITVNGEKV 60
Query: 115 PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV 174
+ ++ + + + +HRHEPPV + I+ D++ + KP S+PVHPCG+YR NTVV
Sbjct: 61 LPTTVLRGNDVLRNRVHRHEPPVTDQPLEIICNTDDIVVLNKPSSIPVHPCGRYRHNTVV 120
Query: 175 GILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFP 234
+L EH+L L+ +HR+DRL SG+L+ A+ ++A + Q+ +V K Y+ RV G FP
Sbjct: 121 FLLGKEHNLRNLYTIHRIDRLTSGILMFAKTLTRARMLEAQVRDRQVEKEYLCRVQGEFP 180
Query: 235 ----EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCE 290
+ EQ + V +++ R + + GK+ T FT++ +NG S+V C
Sbjct: 181 SEPVDCEQPIIV-VSHKVGICRVSPD-----------GKSCRTVFTKLHSNGKSSVVKCI 228
Query: 291 PITGRTHQIRVHLQYTGYPIANDMLY 316
P TGR HQIRVHLQ+ GYPI +D +Y
Sbjct: 229 PYTGRMHQIRVHLQWLGYPIIDDPIY 254
>gi|320583405|gb|EFW97618.1| DRAP deaminase, putative [Ogataea parapolymorpha DL-1]
Length = 569
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/301 (38%), Positives = 175/301 (58%), Gaps = 32/301 (10%)
Query: 29 GNGNSSNNMEIVWQTPANPPVKED-----YIFRDGRRNVKPYYFEFISHVKNRWAGKTIV 83
G+ N+ N +I P N +KE+ Y R ++PYYF +++H K RW + I+
Sbjct: 37 GDKNAENLTDI----PLNKTIKEEEDDAVYSIDGPVRRLRPYYFTYMTHCKQRWIDRNIL 92
Query: 84 DLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS 143
D+FA EF+ P YY +A++ GR+ ++E++ + +K+ ISH +HRHEPPV + V
Sbjct: 93 DVFAHEFRLHPKSYYRNALEKGRVTINEKVANIDTILKNGDLISHRMHRHEPPVTSRPVK 152
Query: 144 ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILA 203
I+ ++ +++ + KP +PVHP G+YR NTV IL+ E + P +RLDRL SGL+ L
Sbjct: 153 IVHEDDELVVIDKPSGIPVHPTGRYRHNTVTFILEREMGIKA-HPCNRLDRLTSGLMFLG 211
Query: 204 RNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV--------VDVNINYNASAGRSTA 255
+ A+ A+ +Q+ +V K YIA+V G FP ++ VD I +N +
Sbjct: 212 KTAAGAEKMVKQMREREVSKEYIAKVVGEFPAQREIVCEEPLRTVDPRIAFNIVDREN-- 269
Query: 256 ESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
GK A T F R+S +G S+V+C+P+TGRTHQIRVHLQY G+PI ND L
Sbjct: 270 ------------GKEAKTVFKRLSYDGVTSLVICKPLTGRTHQIRVHLQYLGHPIVNDPL 317
Query: 316 Y 316
Y
Sbjct: 318 Y 318
>gi|301622434|ref|XP_002940545.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Xenopus (Silurana) tropicalis]
Length = 497
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/269 (39%), Positives = 164/269 (60%), Gaps = 15/269 (5%)
Query: 55 FRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV 114
+G R V+PYYF+F ++ K RW GK+++++F +EF+ P +YY A + GR++++EE V
Sbjct: 82 LENGLRKVRPYYFDFETYCKGRWVGKSLLEVFGKEFRAEPLEYYEQAAQAGRLRLNEETV 141
Query: 115 -PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTV 173
++ +K++ + + +HRHEPPV A + IL + +++ + KP S+PVHPCG++R NTV
Sbjct: 142 RDLNVVLKNNDFLRNTVHRHEPPVTAEPLRILAENDEMVVIDKPSSLPVHPCGRFRHNTV 201
Query: 174 VGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVF 233
+ IL E++L L +HRLDR+ SG+L+ A+ + +Q+ ++ K Y+ RV G F
Sbjct: 202 IFILGKEYNLKGLHTIHRLDRMTSGVLMFAKTLEVSKKIDEQVRQRQLEKEYVCRVCGEF 261
Query: 234 PEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCE 290
P+ E + ++Y R KGK T F R+S NG S+V C
Sbjct: 262 PKEEVTCEEPIFVVSYKIGVCRVDP-----------KGKPCKTVFQRLSYNGKSSVVKCF 310
Query: 291 PITGRTHQIRVHLQYTGYPIANDMLYLCE 319
P TGRTHQIRVHLQY G+PI ND +Y E
Sbjct: 311 PYTGRTHQIRVHLQYLGHPIVNDPIYNTE 339
>gi|328774056|gb|EGF84093.1| hypothetical protein BATDEDRAFT_8379 [Batrachochytrium
dendrobatidis JAM81]
Length = 379
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 159/261 (60%), Gaps = 8/261 (3%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G R VKPY + + ++ K RW G T+ ++F++EF RP + Y A+ GRI+++ + VP+
Sbjct: 4 GLRKVKPYLYVYQTYAKQRWLGMTVFEVFSKEFHDRPAEVYRQAILKGRIKINGKAVPLD 63
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGIL 177
Y +++S + + +HRHEP + + I+ + VL V KP S+PVHP G+YR NTV+ +L
Sbjct: 64 YVIRNSDLVENTVHRHEPVITDTPIEIVHQSDSVLVVNKPSSIPVHPTGRYRYNTVIHLL 123
Query: 178 QAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237
+ E+ + LF V+R+DRL SGL+++AR+ +KA Q++ ++ K Y+ARV G FP
Sbjct: 124 EYENKMNDLFLVNRIDRLTSGLVLIARDKNKAAYMMQEMRERRIHKTYLARVKGEFPADA 183
Query: 238 QVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTH 297
T E + GK T F R+S NG S+V CEP+TGRTH
Sbjct: 184 --------IECHEPIETVEFKVGVNIVSPTGKPCSTLFKRLSYNGLTSVVQCEPLTGRTH 235
Query: 298 QIRVHLQYTGYPIANDMLYLC 318
QIRVHLQ+ G+PIAND +Y C
Sbjct: 236 QIRVHLQFLGHPIANDPIYGC 256
>gi|340385009|ref|XP_003391003.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Amphimedon queenslandica]
Length = 407
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/271 (40%), Positives = 161/271 (59%), Gaps = 26/271 (9%)
Query: 48 PVKED--YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCG 105
P+K++ Y FR+G R+V PYYF+F +H K RW G+ + D+F+EEF+ +YY A+ G
Sbjct: 34 PLKDESIYFFRNGLRHVIPYYFKFSTHAKGRWVGRKVYDVFSEEFQSEKPEYYERAINLG 93
Query: 106 RIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPC 165
++ V+ ++ + +K + ++H +HRHEPPV + ++I+ D+L V KPPS+PVHPC
Sbjct: 94 KVTVNGKVATMETVIKDNDVVTHLVHRHEPPVSSQSINIITNNKDLLVVNKPPSIPVHPC 153
Query: 166 GQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRY 225
G+YR+NT++ IL+ E+D+ ++ +HRLD+ SGLL+ + SK +QI +V K Y
Sbjct: 154 GRYRQNTMINILKNEYDIDNIYTIHRLDKCTSGLLLFGKRISKVQEIEEQIRDRQVHKEY 213
Query: 226 IARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHS 285
+A VNG F I N S + + G + D P+ GK
Sbjct: 214 LALVNGHFNHPG-----TIECNESIKVLSHKVGVCMVD-PVNGKD--------------- 252
Query: 286 IVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
CEP TGR HQIRVHLQY G+PI ND LY
Sbjct: 253 ---CEPRTGRMHQIRVHLQYLGFPIINDPLY 280
>gi|346320715|gb|EGX90315.1| DRAP deaminase [Cordyceps militaris CM01]
Length = 489
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 169/291 (58%), Gaps = 13/291 (4%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TPA Y F D R V+PY+F + + K RW G+T++D+FA EF+ RP +YY +A+
Sbjct: 58 TPAGDLWPRPYYFEDDLRRVQPYHFTYNTWCKERWRGRTLIDIFACEFRDRPLEYYRAAM 117
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G I V++ V Y V++ KISH LHRHEPPV A V I+ ++ D++ + KP VPV
Sbjct: 118 ELGDIFVNQRRVGPEYIVRNGDKISHTLHRHEPPVTAEPVGIIHEDEDMIVINKPSGVPV 177
Query: 163 HPCGQYRKNTVVGILQAEH--DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
HP G+Y N+V+ I++++ D P +P +RLDRL SG++ + ++ A+ +I
Sbjct: 178 HPAGRYNFNSVIEIMKSDRGKDFMP-YPCNRLDRLTSGIMFIGKSPKAAEELGDKIRERT 236
Query: 221 VIKRYIARVNGVFPEGEQVVDVNI---------NYNASAGRSTAESGDSLGDTPLKGKAA 271
V K Y+ARV G FP+GE V D+ I N + G+S L P +
Sbjct: 237 VRKEYLARVMGEFPDGEVVCDMPILQISPKLGLNRVRANGKSARTVFKRLAYYPPRTAVT 296
Query: 272 CTKFTRISTNGT-HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
+ I T +SIV C P+TGRTHQIRVHLQ+ GYPI ND +Y + V
Sbjct: 297 QSPDDTIMRKRTGYSIVRCLPVTGRTHQIRVHLQHLGYPIQNDPIYANQRV 347
>gi|406860606|gb|EKD13663.1| DRAP deaminase [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 455
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 171/291 (58%), Gaps = 19/291 (6%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P Y +G R V PY+F + ++ K RW G+ ++D+FA EF+ RP +YY A+
Sbjct: 31 TPCDP-WPRPYFLENGLRRVAPYHFTYNTYCKERWRGRELLDIFASEFRDRPLEYYKDAI 89
Query: 103 KCGRIQVDEEMVPVS-YTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
+ G + V+ + VP + + VK+ ISH LHRHEPPV A +S+L ++ D++ + KP VP
Sbjct: 90 ERGAVTVNGKPVPTTQHIVKNGDVISHTLHRHEPPVTALPISVLHEDEDMIVINKPSGVP 149
Query: 162 VHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
VHP G+Y N+VV I++AE H PL P +RLDRL SG++ +A++ A+ QI
Sbjct: 150 VHPAGRYNYNSVVEIMRAERGHAWNPL-PCNRLDRLTSGVMFIAKHPKSAEALSIQITQR 208
Query: 220 KVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLGDTPLKGKA 270
V K YIARV G FP+GE V D + +N + G+S L P
Sbjct: 209 TVRKEYIARVKGEFPDGEVVCDKPILQISPKLGLNRVRANGKSARTVFKKLAYYPPTLDK 268
Query: 271 ACTKF-----TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
++ +R T +S+V C P+TGRTHQ+RVHLQ+ G+PIAND +Y
Sbjct: 269 ESSQLGEDDNSRPGTEEGYSVVRCLPVTGRTHQLRVHLQFLGHPIANDPIY 319
>gi|320590514|gb|EFX02957.1| drap deaminase [Grosmannia clavigera kw1407]
Length = 528
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 171/281 (60%), Gaps = 23/281 (8%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
+ DG R V+PYY+ + + VK RW G+ ++ +F EF+ RP YY +A++ G + V+++
Sbjct: 45 FYIEDGLRRVEPYYYTYNTWVKERWRGREVLAVFESEFRDRPLAYYRAALEAGTVTVNQQ 104
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
V + +++ ++ISH HRHEPPV A + ++ ++ D++ + KP VPVHP G+Y+ N+
Sbjct: 105 TVGPDHVLRNGERISHRTHRHEPPVTAEPIVVIHEDDDMVVINKPAGVPVHPAGRYQYNS 164
Query: 173 VVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
VV +L+A+ + + +P +RLDRL SG++ LA++ + A QI+A V K Y+ARV G
Sbjct: 165 VVEMLKAQREPGFMPYPCNRLDRLTSGIMFLAKSPAAAKRLSLQIQARAVRKEYLARVVG 224
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI-----STNGT 283
FP+G+QV D + I+ R A G++A T F R+ S G
Sbjct: 225 RFPDGQQVCDQPILQISPKLGLNRVRA-----------NGRSARTVFQRLAYYEGSAGGR 273
Query: 284 ---HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
+S+V C P+TGRTHQIRVHLQY G+PI ND +Y + V
Sbjct: 274 SEGYSVVRCLPVTGRTHQIRVHLQYLGHPIENDPIYANQRV 314
>gi|347827477|emb|CCD43174.1| similar to DRAP deaminase [Botryotinia fuckeliana]
Length = 457
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 174/307 (56%), Gaps = 40/307 (13%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP++P Y +G R V PY+F + ++ K RW G+ I+D+F+ EF+ RP +YY A+
Sbjct: 32 TPSDP-WPRPYYLDNGLRRVAPYHFTYNTYCKQRWRGREILDIFSSEFRDRPIEYYKDAM 90
Query: 103 KCGRIQVDEEMVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
+ G I V+ + V +S +K+ ISH LHRHEPPV A +SI+ ++ D++ + KP VP
Sbjct: 91 ERGAIAVNGKPVESISQIIKNGDVISHTLHRHEPPVTALPISIVHEDEDIIVINKPSGVP 150
Query: 162 VHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
VHP G+Y N+VV I++AE H PL P +RLDRL SG++ + ++A A+ QI
Sbjct: 151 VHPAGRYNYNSVVEIMRAERGHGWNPL-PCNRLDRLTSGIMFIGKHAKAAEALSLQISGR 209
Query: 220 KVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK--GKAACTKFTR 277
V K YIARV G FP+GE V D+ I + LG ++ GKAA T F R
Sbjct: 210 TVRKEYIARVKGKFPDGEVVCDMPI----------LQISPKLGLNRVRANGKAARTVFKR 259
Query: 278 IS-----------------------TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDM 314
++ +SIV C P+TGRTHQ+RVHLQ+ G+PI ND
Sbjct: 260 LAYYPPEQAHDNPEQTELDKTRPPMAKEGYSIVRCLPVTGRTHQLRVHLQFLGHPIGNDP 319
Query: 315 LYLCEHV 321
+Y + V
Sbjct: 320 IYCNQRV 326
>gi|281211774|gb|EFA85936.1| pseudouridine synthase family protein [Polysphondylium pallidum
PN500]
Length = 530
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/283 (42%), Positives = 166/283 (58%), Gaps = 15/283 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y+ DG R V+PYYF F K RW G+ ++++F EF P Y +K G I+V+ +
Sbjct: 142 YVVEDGLRKVQPYYFTFKVWAKERWYGRELLEMFTNEFSQLPESIYRLKIKLGWIKVNGK 201
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
+V +Y + + +I H +HRHEPPV + ++ + DV+ V KP S+P+HPCG++R NT
Sbjct: 202 IVSPNYKLTNKDEIEHRVHRHEPPVSGAPIHVVAVDDDVVVVDKPSSIPIHPCGRFRHNT 261
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
++ IL AE L+ VHRLDRL SGLLILAR+ + A + I +G V KRY+A+V G
Sbjct: 262 LIYILAAELGYNRLYGVHRLDRLTSGLLILARSPAAATKKSEAIMSGNVTKRYVAQVRGR 321
Query: 233 FPEGEQVVDVNINY-NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLC 289
FP+G+ VD + N G L GK A T TR+S + S+V C
Sbjct: 322 FPDGDITVDQPLKVQNHRLG---------LNQVSPDGKPALTVITRLSYDAETDTSVVSC 372
Query: 290 EPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREG--MSAD 330
P TGRTHQIR+HLQ+ G+PI ND LY EH G M++D
Sbjct: 373 LPKTGRTHQIRLHLQWIGHPITNDPLY-NEHFKLNAGKIMTSD 414
>gi|154302617|ref|XP_001551718.1| pseudouridine synthase [Botryotinia fuckeliana B05.10]
Length = 453
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 174/307 (56%), Gaps = 40/307 (13%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP++P Y +G R V PY+F + ++ K RW G+ I+D+F+ EF+ RP +YY A+
Sbjct: 28 TPSDP-WPRPYYLDNGLRRVAPYHFTYNTYCKQRWRGREILDIFSSEFRDRPIEYYKDAM 86
Query: 103 KCGRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
+ G I V+ + V +S +K+ ISH LHRHEPPV A +SI+ ++ D++ + KP VP
Sbjct: 87 ERGAIAVNGKPVESISQIIKNGDVISHTLHRHEPPVTALPISIVHEDEDIIVINKPSGVP 146
Query: 162 VHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
VHP G+Y N+VV I++AE H PL P +RLDRL SG++ + ++A A+ QI
Sbjct: 147 VHPAGRYNYNSVVEIMRAERGHGWNPL-PCNRLDRLTSGIMFIGKHAKAAEALSLQISGR 205
Query: 220 KVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK--GKAACTKFTR 277
V K YIARV G FP+GE V D+ I + LG ++ GKAA T F R
Sbjct: 206 TVRKEYIARVKGKFPDGEVVCDMPI----------LQISPKLGLNRVRANGKAARTVFKR 255
Query: 278 IS-----------------------TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDM 314
++ +SIV C P+TGRTHQ+RVHLQ+ G+PI ND
Sbjct: 256 LAYYPPEQAHDNPEQTELDKTRPPMAKEGYSIVRCLPVTGRTHQLRVHLQFLGHPIGNDP 315
Query: 315 LYLCEHV 321
+Y + V
Sbjct: 316 IYCNQRV 322
>gi|363734066|ref|XP_426389.3| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
[Gallus gallus]
Length = 491
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 165/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYY++F ++ K RW G++++ +F+ EF+ +P YY +A + GR++++EE
Sbjct: 60 YYFEGGLRKVRPYYYDFRTYCKGRWVGRSLLHVFSTEFRAQPLSYYRAAARAGRLRLNEE 119
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V + +K++ + + +HRHEPPV A + IL + +V+ V KP S+PVHPCG++R N
Sbjct: 120 PVQDLDVVLKNNDFLRNTVHRHEPPVTAQPIQILVENDEVVVVDKPSSLPVHPCGRFRHN 179
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH+L L +HRLDR+ SG+L+ A+ + +Q+ ++ K Y+ RV G
Sbjct: 180 TVIFILGKEHNLKELHTIHRLDRMTSGVLMFAKTVEVSKRIDEQVRERQLEKEYVCRVVG 239
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FPE E V + + ++Y R KGK T F R+S NG S+V
Sbjct: 240 EFPEHEVVCEEPILVVSYKVGVCRVDP-----------KGKCCKTIFQRLSYNGKSSVVK 288
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P TGRTHQIRVHLQY GYPI ND +Y
Sbjct: 289 CLPRTGRTHQIRVHLQYLGYPIVNDPIY 316
>gi|449302179|gb|EMC98188.1| hypothetical protein BAUCODRAFT_574268 [Baudoinia compniacensis
UAMH 10762]
Length = 449
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 179/316 (56%), Gaps = 35/316 (11%)
Query: 40 VWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYV 99
V TP +P Y DG R V PY+F + ++VK RW G+ I+D+F +EF+ RP +YY
Sbjct: 22 VVTTPCDP-WPRPYYLEDGLRRVAPYHFTYNTNVKERWRGRGILDIFRDEFRDRPEEYYK 80
Query: 100 SAVKCGRIQVDEEMVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPP 158
A++ G+IQV+ + VP V V++ ISH LHRHEPPV A ++I+ ++ D++ + KP
Sbjct: 81 DAIETGKIQVNGQPVPSVGAVVQNGDIISHTLHRHEPPVTAQPITIVHEDDDMIVINKPA 140
Query: 159 SVPVHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
VPVHP G+Y N+VV I++AE H PL P +RLDRL SG++ + ++ A+ Q+
Sbjct: 141 GVPVHPAGRYNYNSVVEIMRAERGHQWNPL-PCNRLDRLTSGVMFIGKHKKAAERLTDQL 199
Query: 217 EAGKVIKRYIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACT 273
V K Y+ARV G FP E V + + I+ R A GK A T
Sbjct: 200 VERTVRKEYVARVKGEFPANEVVCEQPILQISPKLGLNRVRA-----------NGKTAKT 248
Query: 274 KFTRI-------STNGT------HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEH 320
F R+ ++ G +SIV C P+TGRTHQ+RVHLQ+ G+PI ND +Y
Sbjct: 249 VFRRLAYYPPAATSQGDSAPKEGYSIVRCLPLTGRTHQLRVHLQFLGHPITNDPIYANRR 308
Query: 321 VTHREGMSADRAAAYS 336
V G S R++A S
Sbjct: 309 VF---GASLGRSSANS 321
>gi|328721920|ref|XP_001945972.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Acyrthosiphon pisum]
Length = 565
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 108/269 (40%), Positives = 155/269 (57%), Gaps = 17/269 (6%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F ++ K RW G+T++D+F EEF+ D Y ++ G + ++ E
Sbjct: 123 YYIENGLRKVYPYYFTFTTYTKGRWVGRTLMDVFGEEFRAHSSDEYERHIEKGSLTINNE 182
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
V Y +K + +++ +HRHE PV + + ++ + D++ V KP S+PVHPCG+YR NT
Sbjct: 183 RVSPDYVLKHNDLLANVVHRHEVPVASSTIDVIHLDDDIVVVNKPSSIPVHPCGRYRHNT 242
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
+V +L E+ L L +HRLDRL SG+L+ R ++A QI V K+Y+ RV G
Sbjct: 243 MVFVLAKEYGLRDLKTIHRLDRLTSGVLMFGRTQNRARTLEAQIRDRVVNKQYVCRVEGK 302
Query: 233 FPEG---EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN--GTHSIV 287
FPE EQ ++V I+Y + + GK T F I N S+V
Sbjct: 303 FPESVECEQPIEV-ISYKIGVCKVSP-----------NGKQCSTSFQLIGYNEQANTSVV 350
Query: 288 LCEPITGRTHQIRVHLQYTGYPIANDMLY 316
LC+P +GR HQIRVHLQY G+PI ND LY
Sbjct: 351 LCKPRSGRMHQIRVHLQYLGHPIQNDPLY 379
>gi|324509347|gb|ADY43935.1| Unknown [Ascaris suum]
Length = 386
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 181/318 (56%), Gaps = 15/318 (4%)
Query: 44 PANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVK 103
P+N P + ++G R + Y+ + + K RW G+ +VD+F EEF + +Y ++A K
Sbjct: 2 PSNVP----FHIKNGIRYLDAYWTTYCTRTKGRWIGRKLVDVFQEEFLSQHPNYAMAACK 57
Query: 104 CGRIQVDE-EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
GR+ V+E +M Y K++ I H HRHE P++A + ++ D+L V KPPS+PV
Sbjct: 58 LGRLFVNERQMTDTDYVFKNNDAIVHVAHRHEHPILAKPIEFIENNDDLLVVNKPPSMPV 117
Query: 163 HPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVI 222
H CGQYR +TV+G+L EH++ L +HRLDR SG+LI A+N F++ +++G++
Sbjct: 118 HACGQYRLHTVMGLLHTEHNITGLRVLHRLDRTTSGVLIFAKNYESDLEFKEALKSGELH 177
Query: 223 KRYIARVNGVFP-EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN 281
K Y+ +V GVFP GE+V+ G G + GK A T+F R+ ++
Sbjct: 178 KEYVCKVEGVFPGNGEEVI-----CEEPIGSLVLTMG--IQCVRNDGKPARTRFKRLWSD 230
Query: 282 GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHHSPP 341
G S+V C TGRTHQIRVHLQY G+PI +D LY + + G +A+ +Y
Sbjct: 231 GKISVVKCFLDTGRTHQIRVHLQYLGFPIVDDELYNTDVWGPQRGKNAEYGKSYEELCKD 290
Query: 342 PVSSDKSESSSEDFSIDP 359
++ +S E +IDP
Sbjct: 291 ITAAHRSSLWHE--TIDP 306
>gi|366991879|ref|XP_003675705.1| hypothetical protein NCAS_0C03500 [Naumovozyma castellii CBS 4309]
gi|342301570|emb|CCC69340.1| hypothetical protein NCAS_0C03500 [Naumovozyma castellii CBS 4309]
Length = 582
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 169/289 (58%), Gaps = 10/289 (3%)
Query: 32 NSSNNMEIVWQTPANPPVKED---YIFRDGR-RNVKPYYFEFISHVKNRWAGKTIVDLFA 87
N+ +++V +T AN + D + DG R +KPYYF + + K RW + ++D+F
Sbjct: 43 NAGFKLKVV-ETTANKNKQSDPEYEVIIDGTLRKIKPYYFTYKTFCKERWRDRRLLDIFV 101
Query: 88 EEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQK 147
EF+ R DYY + G + V+ E + V++ I+H LHRHEPPV + + I+ +
Sbjct: 102 TEFRDREEDYYRKTIAAGLVYVNNEPANLETIVRNGDLITHKLHRHEPPVSSRPIKIVFE 161
Query: 148 EPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNAS 207
D+L + KP S+PVHP G++R NT+ IL+ E+ + P +RLDR SGL+ LA+
Sbjct: 162 NEDILVIDKPSSLPVHPTGRFRFNTITKILERENGYI-VHPCNRLDRPTSGLMFLAKTPR 220
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
AD Q++A +V K Y+ARV G FP E +V+ + S A + + P
Sbjct: 221 GADSMADQLKAREVSKEYVARVKGEFPTEEVIVEQPLR---SVEPKVALNAVCSMEDP-G 276
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T F RIS +G SIV C+P+TGRTHQIRVHLQY GYPIAND +Y
Sbjct: 277 AKHAKTVFKRISYDGQTSIVNCKPLTGRTHQIRVHLQYLGYPIANDTIY 325
>gi|328725051|ref|XP_001944933.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Acyrthosiphon pisum]
Length = 522
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 109/271 (40%), Positives = 153/271 (56%), Gaps = 20/271 (7%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW + I+D+FA EF+ P + Y +K G + V+ +
Sbjct: 96 YYIENGLRKVYPYYFTFTTFTKGRWVNQNILDVFAREFRAHPAEEYERCIKSGSLTVNYQ 155
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
V Y +K + +++ +HRHE PV ++I+ + D++ V KP S+PVHPCG+YR NT
Sbjct: 156 KVDTQYKLKHNDLLANVVHRHEVPVTNDPITIVHMDDDIVVVNKPASIPVHPCGRYRHNT 215
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV +L EH+L L +HRLDRL SGLL+ R A + QI +V K+Y+ RV G
Sbjct: 216 VVFVLAKEHNLRNLRTIHRLDRLTSGLLMFGRTPRYARIMEAQIRNRQVNKQYVCRVEGR 275
Query: 233 FPEGEQVVDVN-----INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH--S 285
FP EQ ++ N ++Y + + KGK T F + N S
Sbjct: 276 FP--EQTIECNHPIEVVSYKIGVCKVSN-----------KGKNCSTTFQLVGYNEKTNIS 322
Query: 286 IVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+VLC P +GR HQIRVHLQY G+P+ ND LY
Sbjct: 323 VVLCFPHSGRMHQIRVHLQYLGFPVKNDPLY 353
>gi|355692612|gb|EHH27215.1| RNA pseudouridylate synthase domain-containing protein 2 [Macaca
mulatta]
Length = 515
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 158/272 (58%), Gaps = 19/272 (6%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P C + E
Sbjct: 99 YYFEGGLRKVRPYYFDFQTYCKGRWVGHSLLHVFSTEFRAQPLAXXXXXXXCTSTRSRYE 158
Query: 113 M--VPV-SYTVKSSQK--ISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQ 167
+ PV S TV S + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG+
Sbjct: 159 IPDTPVRSNTVYLSDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGR 218
Query: 168 YRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIA 227
+R NTV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+
Sbjct: 219 FRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVC 278
Query: 228 RVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH 284
RV G FP E + ++Y R DT +GK T F R+S NG
Sbjct: 279 RVEGEFPTEEVTCKEPILVVSYKVGVCRV---------DT--RGKPCETVFQRLSYNGQS 327
Query: 285 SIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
S+V C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 328 SVVRCRPLTGRTHQIRVHLQFLGHPILNDPIY 359
>gi|170578286|ref|XP_001894351.1| Hypothetical 50.0 kDa protein K07E8.7 in chromosome IV, putative
[Brugia malayi]
gi|158599118|gb|EDP36813.1| Hypothetical 50.0 kDa protein K07E8.7 in chromosome IV, putative
[Brugia malayi]
Length = 430
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/278 (40%), Positives = 163/278 (58%), Gaps = 13/278 (4%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
T P + ++G R +KPY+ + + K RW G+ +VD+FAEEF Y +A
Sbjct: 24 TLVQMPENVSFHIKNGIRYLKPYWSVYRTWAKGRWVGRRLVDIFAEEFVSLNRHYPAAAC 83
Query: 103 KCGRIQVD-EEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
K GRI V+ +M V+Y V+ + I H HRHE P++ + ++ + D+L V KPPS+P
Sbjct: 84 KLGRIWVNCNQMTNVNYIVQQNDSIEHIGHRHEHPILDHYIKVIDNDNDMLVVDKPPSMP 143
Query: 162 VHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
VHPCG+Y +TV+G+L+ + L L VHRLDR SG+L+ ARNA ++ + G++
Sbjct: 144 VHPCGRYSVHTVLGMLREQRGLRGLRVVHRLDRTTSGVLLFARNAETDTKLKKMLRVGEI 203
Query: 222 I-KRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK--GKAACTKFTRI 278
K YI +V GVFP +++V R S+G ++ GK+A ++F R+
Sbjct: 204 WHKEYICKVEGVFPGDKEIV---------CDRPIGPLVVSMGIQCIRDDGKSARSRFWRL 254
Query: 279 STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+G SIV C TGRTHQIRVHLQY GYPI +D +Y
Sbjct: 255 WTDGQTSIVRCMLETGRTHQIRVHLQYLGYPIVDDYIY 292
>gi|440638387|gb|ELR08306.1| hypothetical protein GMDG_03104 [Geomyces destructans 20631-21]
Length = 507
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 166/304 (54%), Gaps = 35/304 (11%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TPA+P Y+F DG R V PY+F + ++ K RW G+ ++D+F EF+ RP +YY +A+
Sbjct: 10 TPADP-WPRPYVFEDGLRRVAPYHFTYNTNCKMRWRGRELLDIFESEFRDRPVEYYKTAI 68
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + V+ + + V++ ISH LHRHEPPV A ++++ ++ D++ +CKP +PV
Sbjct: 69 ETGMVVVNGKPASTTDVVQNGDVISHTLHRHEPPVTAAPITVISEDEDMMVICKPSGIPV 128
Query: 163 HPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVI 222
HP G+Y N+V+ IL A P +RLDRL SG++ + ++ A+ QI V
Sbjct: 129 HPAGRYNYNSVIEILAASRPGWKPLPCNRLDRLTSGVMFIGKHPRAAEELSTQISGRTVR 188
Query: 223 KRYIARVNGVFPEGEQVVDVNI-NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN 281
K Y+ARV G FP+G+ V + I + G L GK A T F R++
Sbjct: 189 KEYVARVAGKFPDGDVVCAMPILQISPKLG---------LNRVRASGKPARTVFRRLAYY 239
Query: 282 GT------------------------HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYL 317
G +SIV C PITGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 240 GPEEGAEETGAEEGKAEGRPWVGKKGYSIVRCLPITGRTHQIRVHLQFLGHPITNDPIYS 299
Query: 318 CEHV 321
+ V
Sbjct: 300 NQRV 303
>gi|452986674|gb|EME86430.1| hypothetical protein MYCFIDRAFT_194496 [Pseudocercospora fijiensis
CIRAD86]
Length = 454
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 172/299 (57%), Gaps = 33/299 (11%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P Y DG R V PY+F + + K RW G+ ++++F+EEF+ RP +YY SA+
Sbjct: 25 TPCDP-WPRPYYLEDGLRRVAPYHFTYNTFCKERWRGRGLLEIFSEEFRDRPVEYYRSAI 83
Query: 103 KCGRIQVDEEMVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
+ G +Q++ + VP V VK+ ISH +HRHEPPV V ++ ++ ++ + KP VP
Sbjct: 84 ESGAVQINGKTVPSVDTPVKNGDVISHTMHRHEPPVTGQPVGVVHEDEGLIIINKPAGVP 143
Query: 162 VHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
VHP G+Y N+VV I++AE H PL P +RLDRL SG++ +A++ A +Q+
Sbjct: 144 VHPAGRYNYNSVVEIMRAERGHQFNPL-PCNRLDRLTSGVMFIAKDKQTAVSITEQLMGR 202
Query: 220 KVIKRYIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFT 276
+ K Y+ARV G FP+G+ + + + I+ R A GK A T F
Sbjct: 203 TIRKEYVARVKGRFPDGDIICEQPILQISPKLGLNRVRA-----------NGKEARTVFK 251
Query: 277 RIS----------TNGT----HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
R++ NG +SIV C P+TGRTHQ+RVHLQ+ G+PI+ND +Y + V
Sbjct: 252 RLAYYPPREPGVDANGQPKEGYSIVRCRPLTGRTHQLRVHLQFLGHPISNDPIYCNQRV 310
>gi|453087841|gb|EMF15882.1| DRAP deaminase [Mycosphaerella populorum SO2202]
Length = 454
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 169/299 (56%), Gaps = 33/299 (11%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P Y F D R V PY+F + ++ K RW G+ ++++F +EF+ RP +YY A+
Sbjct: 24 TPCDP-WPRPYYFEDNLRRVAPYHFTYNTYCKERWRGRGLLEIFTDEFRDRPVEYYKGAI 82
Query: 103 KCGRIQVDEEMVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
+ G +Q++ + VP + VK+ ISH +HRHEPPV A V ++ ++ DV+ + KP VP
Sbjct: 83 EAGAVQINGKTVPSIETIVKNGDVISHTMHRHEPPVTAQPVGVVHEDEDVIIINKPAGVP 142
Query: 162 VHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
VHP G+Y N+V+ I+++E H PL P +RLDRL SG++ +A++ A +Q+
Sbjct: 143 VHPAGRYNYNSVIEIMRSERGHGFDPL-PCNRLDRLTSGVMFIAKHKKAAGEITEQLMGR 201
Query: 220 KVIKRYIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFT 276
+ K Y+ARV G FPEG+ V D + I+ R A GK A T F
Sbjct: 202 TIKKEYVARVKGKFPEGDVVCDQPILQISPKLGLNRVRA-----------NGKEARTVFK 250
Query: 277 RI--------------STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
R+ S +SIV P+TGRTHQ+RVHLQ+ G+PI ND +Y + V
Sbjct: 251 RLAYYPPRQPGLDAYGSVKEGYSIVRARPLTGRTHQLRVHLQFLGHPITNDPIYSNQRV 309
>gi|346970993|gb|EGY14445.1| DRAP deaminase [Verticillium dahliae VdLs.17]
Length = 510
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 118/317 (37%), Positives = 168/317 (52%), Gaps = 29/317 (9%)
Query: 32 NSSNNMEIVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFK 91
+ N + + TP P Y+ DG R VKPYY F ++ K RW G+T++D+F+ EF+
Sbjct: 104 DHGNALPDIIITPLEGPWPRPYVIEDGLRKVKPYYHTFNTYCKERWRGRTLIDVFSCEFR 163
Query: 92 GRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDV 151
R +YY + G+I + ++V Y +++ +SH HRHEPPV A ++++ ++ D
Sbjct: 164 DRTPEYYRKCMDDGKIAANGKVVGADYVIRNGDLVSHTSHRHEPPVTAEPIAVIHEDNDY 223
Query: 152 LTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKAD 210
L V KP VPVHP G+Y N+VV IL++E + P HRLDRL SG+L + A A
Sbjct: 224 LIVNKPAGVPVHPAGRYNFNSVVEILKSERGAHFMPRPCHRLDRLTSGILCFGKTAQAAT 283
Query: 211 LFRQQIEAGKVIKRYIARVNGVFPEGEQVVDV--------------------------NI 244
+QI+A V K Y+ARV G FP+GE V D +
Sbjct: 284 DLSRQIQARMVRKEYVARVIGHFPDGEVVCDQPLLQISPRLGLNRVRANGKFARTVFKRL 343
Query: 245 NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
Y A E + TP +AA + ++ +SIV C P+TGRTHQIRVHLQ
Sbjct: 344 AYYPPASSDVDEGPEQRPKTP--EEAADEEQRPWTSKKGYSIVRCLPLTGRTHQIRVHLQ 401
Query: 305 YTGYPIANDMLYLCEHV 321
+ GYPI ND +Y + V
Sbjct: 402 FLGYPIQNDPIYANQRV 418
>gi|167521497|ref|XP_001745087.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776701|gb|EDQ90320.1| predicted protein [Monosiga brevicollis MX1]
Length = 401
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 150/257 (58%), Gaps = 8/257 (3%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R + PY++ F + K RW G+TI+D+F EF+ +YY A+ G I V+ E VP+ +
Sbjct: 30 RRIPPYFYTFNCYAKGRWHGRTILDVFTNEFQAETPEYYRHAITEGLITVNSERVPLDFI 89
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+ ++ I + +HRHEPPV +SI+ + PD+L + KP S+PVHPCG+YR NTV IL
Sbjct: 90 IDNNHIILNKVHRHEPPVTNDPLSIVGETPDLLAIDKPASIPVHPCGRYRHNTVQAILGH 149
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
EHD ++P HRLDRL SGLLI +N + A F Q I +V K+YI RV G +
Sbjct: 150 EHDRWRVYPCHRLDRLTSGLLIFCKNPAMAKQFEQWITQHQVEKQYICRVQGRVEQSVLF 209
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
D + + L +GKA+ T+F I + +++ C P TGR HQI
Sbjct: 210 CDAPLK--------ICDQRLGLCCVHPEGKASLTRFRVIRRDKDTTVLHCFPKTGRMHQI 261
Query: 300 RVHLQYTGYPIANDMLY 316
RVH+QY G+PI ND +Y
Sbjct: 262 RVHVQYLGHPIVNDPVY 278
>gi|448086258|ref|XP_004196057.1| Piso0_005498 [Millerozyma farinosa CBS 7064]
gi|359377479|emb|CCE85862.1| Piso0_005498 [Millerozyma farinosa CBS 7064]
Length = 602
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 109/269 (40%), Positives = 161/269 (59%), Gaps = 13/269 (4%)
Query: 57 DGR-RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
DGR R V PY+F ++++ K RW + ++D+F +EF+ R +YY +A++ G + ++++
Sbjct: 102 DGRLRRVSPYFFTYLTYCKLRWRDRKLLDIFTDEFRERDEEYYKNAIQEGLVAINKKPAN 161
Query: 116 VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+ V++ ISH HRHEP V + + I+ ++ +++ + KP +PVHP G++R NT+
Sbjct: 162 LDSIVRNGDLISHRTHRHEPSVSSNSIKIVFEDENIIAIDKPSGIPVHPTGRFRYNTITN 221
Query: 176 ILQAEHDLAPLF-PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFP 234
I + H+L + P +RLDRL SGL+ L + AD F QQI V K Y+ARV G FP
Sbjct: 222 IFK--HELGQIVHPCNRLDRLTSGLMFLGKTPLGADSFAQQIRDRTVTKEYVARVKGKFP 279
Query: 235 EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN--GTHSIVLCEPI 292
GE +VD + + G S GK A T F RI+ + SIV C P+
Sbjct: 280 LGEIIVDEPLTTLSPKHTLNVIDGKS-------GKEAKTAFRRITYDPETDTSIVKCRPL 332
Query: 293 TGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
TGRTHQIRVHLQ+ G+PIAND LY E+V
Sbjct: 333 TGRTHQIRVHLQFLGHPIANDPLYSSEYV 361
>gi|365758509|gb|EHN00347.1| Rib2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 588
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 176/305 (57%), Gaps = 9/305 (2%)
Query: 16 NSNGNGNGNGNGNGNGNSSNNMEIVWQTPANPPVKEDYIFR---DGR-RNVKPYYFEFIS 71
++N N N N + +SS V QT N K D + DGR R ++PY+F + +
Sbjct: 30 DANRNNNRNEISSKIKDSSGFRLRVIQTGGNKIEKSDPDYEVTVDGRLRKIEPYFFTYKT 89
Query: 72 HVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLH 131
K RW + +VD+F EF+ R YY + G++ ++++ + + I+H +H
Sbjct: 90 FCKERWRDRKLVDVFISEFRDREPSYYAKTIAEGKVYLNDKPANLETIIHDGDLITHKVH 149
Query: 132 RHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHR 191
RHEPPV + + I+ ++ D+L + KP S+PVHP G+YR NT+ +L+ + + + P +R
Sbjct: 150 RHEPPVTSKPIDIVFEDKDILVIDKPSSIPVHPTGRYRFNTITKMLERQLGYS-VHPCNR 208
Query: 192 LDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAG 251
LD+ SGL+ LA+ + AD Q++A +V K Y+ARV G FP G +V+V +
Sbjct: 209 LDKPTSGLMFLAKTSQGADKMGDQMKAREVTKEYVARVKGEFPIG--IVEVERPVRSINP 266
Query: 252 RSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIA 311
+ + +GD K A T F R+S +G SIV C+P+TGRTHQIRVHLQY G+PIA
Sbjct: 267 KVALNAVCEMGDE--NAKHAKTVFQRVSYDGQTSIVKCKPLTGRTHQIRVHLQYLGFPIA 324
Query: 312 NDMLY 316
ND +Y
Sbjct: 325 NDPIY 329
>gi|367040921|ref|XP_003650841.1| pseudouridine synthase [Thielavia terrestris NRRL 8126]
gi|346998102|gb|AEO64505.1| hypothetical protein THITE_2110690 [Thielavia terrestris NRRL 8126]
Length = 489
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 116/301 (38%), Positives = 166/301 (55%), Gaps = 33/301 (10%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F DG R V PY++ + + K RW G+ +VD+F EF+ RP +YY +A+ G++ V+ +
Sbjct: 61 YYFEDGLRRVSPYFYTYNTWCKERWRGRQLVDIFESEFRDRPLEYYRAAMVSGQVAVNGK 120
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
V +Y +K+ ISH HRHEPPV A + I+ ++ D++ + KP +PVHP G+Y N+
Sbjct: 121 TVGPNYILKNGDLISHTTHRHEPPVTAEPIGIIHEDEDMVVINKPSGLPVHPAGRYNYNS 180
Query: 173 VVGILQAEH--DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
VV I++ E + AP P +RLDRL SG++ +A++A A+ QI V K YIARV
Sbjct: 181 VVEIMKQERGPNFAPR-PCNRLDRLTSGIMFIAKHAKAAEQLGAQILRRSVRKEYIARVI 239
Query: 231 GVFPEGEQVVDV------------NINYNASAGRS----------TAESGDSLGDTPLKG 268
G FP+GE V D + N R+ TA S + P G
Sbjct: 240 GRFPDGEVVCDQPILQISPKLGLNRVRANGKPARTVFKRLAYYPPTASSAQARHCGPETG 299
Query: 269 K--------AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEH 320
K A + R + +SIV C P+TGRTHQIRVHLQ+ G+PI ND +Y +
Sbjct: 300 KPSTANELGEAVEQTRRCESQEGYSIVRCLPVTGRTHQIRVHLQFLGHPIQNDPIYANQK 359
Query: 321 V 321
V
Sbjct: 360 V 360
>gi|302836415|ref|XP_002949768.1| pseudouridine synthase [Volvox carteri f. nagariensis]
gi|300265127|gb|EFJ49320.1| pseudouridine synthase [Volvox carteri f. nagariensis]
Length = 712
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 168/312 (53%), Gaps = 43/312 (13%)
Query: 48 PVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRI 107
P DY+F DG R VKPYYF+F VK R GK ++ L AEEF +YY AV GR+
Sbjct: 132 PRPGDYVFVDGLRLVKPYYFDFKCFVKKRQDGKPLMQLMAEEFPMLSPEYYREAVASGRL 191
Query: 108 QVD-EEMVPVSYT--------------------VKSSQKISHFLHRHEPPVMAWDVSILQ 146
+++ P +++ I HF+HRHEPPV+A +V IL
Sbjct: 192 RMEPSSCCPGRGGAEGGKGKGRGGGGIWTPERPLRAGMCIRHFIHRHEPPVLAGEVQILG 251
Query: 147 KEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHD-LAPLFPVHRLDRLVSGLLILARN 205
D + V KP +PVH GQYRKNTV+G++QA + L PL+P +RLD+ VSG+L+LAR+
Sbjct: 252 ITDDFVAVNKPACLPVHTVGQYRKNTVMGVMQAMYPRLWPLYPTYRLDKPVSGVLLLARS 311
Query: 206 ASKADLFRQQIEAGKVIKRYIARVNGVFPE-----GEQVVDVNINYNASAGRST----AE 256
++ A R +E K Y+ARV GVFP+ G VVDV + + A +T
Sbjct: 312 SAVAARMRVLLEERGCSKAYVARVQGVFPDTDAAGGPLVVDVPLGWEAKTNHATPVPREA 371
Query: 257 SGDSLGDTPL----------KGKAACTKFTRIST--NGTHSIVLCEPITGRTHQIRVHLQ 304
+ PL K A T F R+S +G S+V P TGRTHQIRVHLQ
Sbjct: 372 VEAAAAGGPLPPGLNPELAASAKPAETHFRRLSVAPDGLTSVVEAVPKTGRTHQIRVHLQ 431
Query: 305 YTGYPIANDMLY 316
+ G+PIAND Y
Sbjct: 432 HLGHPIANDTQY 443
>gi|340939508|gb|EGS20130.1| hypothetical protein CTHT_0046360 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 526
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 169/309 (54%), Gaps = 36/309 (11%)
Query: 47 PPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGR 106
PP Y F+DG R V PY++ + + K RW G+ ++D+F EF+ RP +YY +A++ G
Sbjct: 91 PPRVAQYYFKDGLRRVVPYFYTYNTWCKERWRGRKLIDIFEAEFRDRPLEYYRTAMETGH 150
Query: 107 IQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCG 166
+ V+ ++V Y +K+ +SH HRHEPPV A + I+ ++ D++ + KP VPVHP G
Sbjct: 151 VLVNGKVVGPDYIMKNGDLVSHTTHRHEPPVTAEPIRIIHEDDDMVVINKPAGVPVHPAG 210
Query: 167 QYRKNTVVGILQAEHDLAPLF---PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIK 223
+Y N+VV I++AE P F P +RLDRL SG++ LA+ A AD QI V K
Sbjct: 211 RYHYNSVVEIMKAER--PPGFSPKPCNRLDRLTSGIMFLAKTAKAADRLGTQILRRTVRK 268
Query: 224 RYIARVNGVFPEGEQVVDVNI---------------------------NYNASAGRSTAE 256
YIARV G FP+GE V D I Y + S A+
Sbjct: 269 EYIARVIGKFPDGEIVCDQPILQISPKLGLNRVRANGKPARTVFKRLAYYPPATNSSPAQ 328
Query: 257 SGDSLGDTPLKGKAAC----TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAN 312
DS ++ + ++ + + + +SIV C P+TGRTHQIRVHLQ+ G+PI N
Sbjct: 329 GSDSSLNSGARLESGVMEQGSNSDKRRIDEGYSIVRCLPVTGRTHQIRVHLQFLGHPIQN 388
Query: 313 DMLYLCEHV 321
D +Y + V
Sbjct: 389 DPIYANQKV 397
>gi|322705188|gb|EFY96776.1| DRAP deaminase [Metarhizium anisopliae ARSEF 23]
Length = 513
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/353 (33%), Positives = 193/353 (54%), Gaps = 46/353 (13%)
Query: 5 REEEKSKANDSNSNGNGNGNGNGNGNGNSSNNMEIVWQTPANPPVKEDYIFRDGRRNVKP 64
+E+E+S+ + + G + + +G + ++ +W P Y F D R V+P
Sbjct: 29 QEKEESRRAAAQARGIASKVAR-DPDGTTITPVKSIWPPP--------YYFEDDLRRVRP 79
Query: 65 YYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ 124
Y++ + + K RW G++++++F EF+ RP +YY ++++ G I V+ V Y +++
Sbjct: 80 YHWTYNTFCKERWRGRSLIEIFESEFRDRPAEYYRTSMEKGDIFVNGTRVGPDYILRNGD 139
Query: 125 KISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE--HD 182
ISH LHRHEPPV + V I+ ++ D++ + KP VPVHP G+Y+ N+V+ I++AE +
Sbjct: 140 LISHTLHRHEPPVTSDPVGIIHEDDDMIVINKPSGVPVHPAGRYKFNSVLEIMKAERGQE 199
Query: 183 LAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD- 241
P +P +RLDRL SG++ +A++ A+ QI++ V K Y+ARV G FPEGE V D
Sbjct: 200 FMP-YPCNRLDRLTSGIMFVAKSVKAAEALGNQIKSRTVRKEYMARVVGEFPEGEIVCDQ 258
Query: 242 --------VNINYNASAGRSTAESGDSLGDTPLKGKAACT------------KFTRI--- 278
+ +N + G++ L P +G A + +R+
Sbjct: 259 PILSISPKLGLNRVRAEGKAARTVFKRLAYYPPRGDAEANGQQGGVPEPTDKELSRLPAE 318
Query: 279 ---STNGT-------HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
+NG +SIV C P+TGRTHQIRVHLQY G+PI ND +Y + V
Sbjct: 319 EGDESNGKPWINKRGYSIVRCLPVTGRTHQIRVHLQYLGHPIQNDPIYANQRV 371
>gi|198414279|ref|XP_002128102.1| PREDICTED: similar to RNA pseudouridylate synthase domain
containing 2 [Ciona intestinalis]
Length = 456
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/267 (40%), Positives = 162/267 (60%), Gaps = 7/267 (2%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVD- 110
+Y F +G R V PYYF+F + K RW GKT+ +++ EF P ++Y AV G ++V+
Sbjct: 92 EYYFENGFRKVHPYYFDFNTFCKGRWLGKTLREVYTTEFSLYPIEHYERAVLEGGVKVNL 151
Query: 111 EEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRK 170
+ +V + ++ + IS LHRHE PV+ V I++ + V KP S+P+HPCG++R
Sbjct: 152 KPVVSLDVKLRDNDMISARLHRHEAPVLDTKVEIIEDNSKYVVVNKPSSIPIHPCGRFRN 211
Query: 171 NTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
N++V IL + L HR+DRL SG++I + + A ++I KV K+Y+ +V
Sbjct: 212 NSLVYILAKDLGYQGLLGCHRIDRLTSGIVIFGKTKNIAHKVAKEISERKVEKQYVCKVV 271
Query: 231 GVFPEGEQVVDVNIN-YNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLC 289
G FP + V + ++ +N G + A + + GK A T FTR+S +GT+S+VLC
Sbjct: 272 GEFPSTDIVCNEPVSLFNRKLGYAVAWKVEG-----VVGKEASTWFTRMSYDGTNSVVLC 326
Query: 290 EPITGRTHQIRVHLQYTGYPIANDMLY 316
+P TGRTHQIRVHLQY G+PI ND +Y
Sbjct: 327 KPKTGRTHQIRVHLQYLGFPIINDPIY 353
>gi|410730249|ref|XP_003671304.2| hypothetical protein NDAI_0G02840 [Naumovozyma dairenensis CBS 421]
gi|401780122|emb|CCD26061.2| hypothetical protein NDAI_0G02840 [Naumovozyma dairenensis CBS 421]
Length = 427
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 157/258 (60%), Gaps = 7/258 (2%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +KPYYF + + K RW ++D+F EF+ R Y YY A++ G I+++ + +
Sbjct: 51 RKIKPYYFTYKTFCKERWRDHNVLDIFVNEFRDREYTYYEKAIRTGLIEINNKPATLDSI 110
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
VK+ ++H +HRHEP V + + I+ + +L + KP +PVHP G++R NTV IL+
Sbjct: 111 VKNGAMLTHKIHRHEPVVTSEPIRIVFENEGLLVIDKPSGIPVHPTGRFRFNTVTKILEE 170
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+++ + P +RLDR SGL+ LA+ AD Q+ +V K Y+ARV G FP GE +
Sbjct: 171 KYNYV-VHPCNRLDRSTSGLMFLAKTPKGADDMAIQLREREVTKEYVARVVGNFPSGEII 229
Query: 240 VDVNINYNASAGRSTAESGDSLGD-TPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
VD I S R S +++ D T K A T F +IS +G S+V C+P+TGRTHQ
Sbjct: 230 VDKPIR---SVNRKV--SLNAVCDITDEDAKNAKTIFEKISYDGQTSVVKCKPLTGRTHQ 284
Query: 299 IRVHLQYTGYPIANDMLY 316
IRVHLQY G+PIAND++Y
Sbjct: 285 IRVHLQYLGHPIANDVIY 302
>gi|260945269|ref|XP_002616932.1| hypothetical protein CLUG_02376 [Clavispora lusitaniae ATCC 42720]
gi|238848786|gb|EEQ38250.1| hypothetical protein CLUG_02376 [Clavispora lusitaniae ATCC 42720]
Length = 590
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/264 (40%), Positives = 156/264 (59%), Gaps = 10/264 (3%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R V PYYF ++++ K RW + ++D+F +EF+ + ++Y A+ G++ +++ +
Sbjct: 92 RRVTPYYFTYLTYCKLRWRDRKLIDVFVDEFRDKEPEFYRRAIAAGQVLLNKTPTTLDSI 151
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
V++ ISH HRHEP V + + I+ ++ D + + KP +PVHP G+YR NT+ I Q
Sbjct: 152 VRNGDLISHRCHRHEPAVSSRPIEIVFEDADKIAINKPSGIPVHPTGRYRYNTITKIFQH 211
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
E + P +RLDRL SGL+ L +NA A+ F +QI V K YIARV G FP GE
Sbjct: 212 EFG-KTVHPCNRLDRLTSGLMFLGKNARGAEFFVKQIRERTVRKEYIARVKGKFPLGELT 270
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN--GTHSIVLCEPITGRTH 297
VD ++ + + KGK A T F+RIS + S+V C P+TGRTH
Sbjct: 271 VDEPLHTVSPKHALNVVDHE-------KGKEAKTLFSRISYDPESDTSVVKCRPLTGRTH 323
Query: 298 QIRVHLQYTGYPIANDMLYLCEHV 321
QIRVHLQY G+PIAND +Y E+V
Sbjct: 324 QIRVHLQYIGHPIANDPIYSSEYV 347
>gi|358386532|gb|EHK24128.1| hypothetical protein TRIVIDRAFT_190965 [Trichoderma virens Gv29-8]
Length = 496
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 172/314 (54%), Gaps = 37/314 (11%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TPA Y+F D R V+PY+F + ++ K RW G++++D+F EF+ RP +YY S++
Sbjct: 52 TPAGDIWPRPYVFEDDLRRVQPYHFTYNTYCKERWRGRSLIDIFESEFRDRPVEYYRSSM 111
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
G I V+ +V Y V++ ISH LHRHEPPV A + I+ ++ D++ + KP VPV
Sbjct: 112 VRGDIYVNGRVVGPDYIVRNGDMISHTLHRHEPPVTAEPIGIIHEDDDIIVINKPSGVPV 171
Query: 163 HPCGQYRKNTVVGILQAEH--DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
HP G+Y N+V+ I+ A+ D P P +RLDRL SG++ +A++ A+ +I
Sbjct: 172 HPAGRYNFNSVIEIMIADRGKDFLP-HPCNRLDRLTSGIMFIAKSVKSAEAMAIKIRGRT 230
Query: 221 VIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSL-------GD- 263
V K Y+ARV G FP+GE V D + +N + G+S L GD
Sbjct: 231 VRKEYLARVVGHFPDGEVVCDQPILQISPKLGLNRVRANGKSARTVFKRLAYYPPLDGDA 290
Query: 264 -------------TPLKGKAACTKFTR---ISTNGTHSIVLCEPITGRTHQIRVHLQYTG 307
TP G+ TR + G +SIV C P+TGRTHQ+RVHLQY G
Sbjct: 291 DEPAMLAEDGRPHTPTNGEEHVQDETRKPWLKKKG-YSIVRCLPVTGRTHQLRVHLQYLG 349
Query: 308 YPIANDMLYLCEHV 321
+PI ND +Y + V
Sbjct: 350 HPIQNDPIYANQRV 363
>gi|444322235|ref|XP_004181773.1| hypothetical protein TBLA_0G03170 [Tetrapisispora blattae CBS 6284]
gi|387514818|emb|CCH62254.1| hypothetical protein TBLA_0G03170 [Tetrapisispora blattae CBS 6284]
Length = 618
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/257 (40%), Positives = 156/257 (60%), Gaps = 5/257 (1%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R ++PYYF + + K RW + +VD+F EEF+ R +YY + G + ++ +
Sbjct: 109 RKIEPYYFTYKTFCKLRWRDRKLVDVFTEEFRDREENYYRKTIAAGSVNLNGVPANLDSV 168
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ I+H LHRHEP V + + + ++ D+L + KP +PVHP G++R NT+ IL+
Sbjct: 169 IRNGDMITHALHRHEPAVTSRSIKTIYEDDDILVIDKPSGIPVHPTGRFRFNTITKILEK 228
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ + P +RLDRL SGL+ LA+ AD Q++ +V K YIARV G FP G+ V
Sbjct: 229 QLGYI-VHPCNRLDRLTSGLMFLAKTPKGADEVGDQLKTREVSKEYIARVVGEFPIGQTV 287
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
V++ + + + + + S+ D K A T FTRIS +G SIV C+P+TGRTHQI
Sbjct: 288 VEMPV--RSVQPKVSLNAVCSMQDE--NAKHAKTIFTRISYDGQTSIVKCKPLTGRTHQI 343
Query: 300 RVHLQYTGYPIANDMLY 316
RVHLQY G+PIAND LY
Sbjct: 344 RVHLQYLGHPIANDPLY 360
>gi|374107989|gb|AEY96896.1| FAEL091Cp [Ashbya gossypii FDAG1]
Length = 609
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 155/264 (58%), Gaps = 9/264 (3%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +KPY+F + + K RW + ++D+F +EF+ R YY + G + ++ + +
Sbjct: 107 RKIKPYFFTYKTFCKERWRDRKLLDVFVDEFRDRDRPYYEKVIGSGGVLLNGKSSTLDSV 166
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ ISH LHRHEPPV + + + ++ D+L + KP +P HP G+YR N++ IL+
Sbjct: 167 LRNGDLISHELHRHEPPVSSRPIRTVYEDDDILVIDKPSGIPAHPTGRYRFNSITKILEK 226
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ + P +RLDRL SGL+ LA+ AD Q++A +V K Y+ARV G FP GE V
Sbjct: 227 QLGYT-VHPCNRLDRLTSGLMFLAKTPKGADEMGDQMKAREVKKEYVARVVGEFPIGEVV 285
Query: 240 VDVNINYNAS--AGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTH 297
VD+ + A + D GK A T+F RIS +G SIV C+P TGRTH
Sbjct: 286 VDMPLKTIEPKLALNMVCDPEDE------AGKGAKTQFKRISYDGQTSIVKCQPYTGRTH 339
Query: 298 QIRVHLQYTGYPIANDMLYLCEHV 321
QIRVHLQY G+PIAND +Y H+
Sbjct: 340 QIRVHLQYLGFPIANDPIYSNPHI 363
>gi|367030349|ref|XP_003664458.1| hypothetical protein MYCTH_2307303 [Myceliophthora thermophila ATCC
42464]
gi|347011728|gb|AEO59213.1| hypothetical protein MYCTH_2307303 [Myceliophthora thermophila ATCC
42464]
Length = 474
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/339 (36%), Positives = 183/339 (53%), Gaps = 37/339 (10%)
Query: 17 SNGNGNGNGNGNGNGNSSNNMEIVWQTPANPPV--KEDYIFRDGRRNVKPYYFEFISHVK 74
++G G G+ + E V PA P V Y F+DG R V PY++ + + K
Sbjct: 10 ASGASQGQQQREGSAQPDSTREPVLHLPA-PSVLWPRPYYFKDGLRRVSPYFYTYNTWCK 68
Query: 75 NRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHE 134
RW G+ +V++F EF+ RP +YY +A++ G++ V+ + V + +K+ ISH HRHE
Sbjct: 69 ERWRGRELVEVFQSEFRDRPIEYYRAAMESGQVAVNGKTVGPHHILKNGDLISHTTHRHE 128
Query: 135 PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF---PVHR 191
PPV A + I+ ++ D++ + KP VPVHP G+Y N+VV I++AE P F P +R
Sbjct: 129 PPVTADPIGIIHEDDDMVVINKPSGVPVHPAGRYNYNSVVEIMKAER--GPGFEPRPCNR 186
Query: 192 LDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDV--------- 242
LDRL SG++ +A++A A+ QI V K YIARV G FP+GE V D
Sbjct: 187 LDRLTSGIMFIAKHAKAAEKLGAQIFKRSVRKEYIARVIGRFPDGEVVCDQPILQISPKL 246
Query: 243 ---NINYNASAGRS-----------TAESGDSLGDTPLKGKA-ACTKFTRISTNGT---- 283
+ N A R+ +A +G + + +A ++ T T G
Sbjct: 247 GLNRVRANGKAARTVFKRLAYYPPCSANNGSRQRNDATENQAVGVSQSTTQPTGGRKIDE 306
Query: 284 -HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
+SIV C P+TGRTHQIRVHLQ+ G+PI ND +Y + V
Sbjct: 307 GYSIVRCLPVTGRTHQIRVHLQFLGHPIQNDPIYANQKV 345
>gi|302307964|ref|NP_984770.2| AEL091Cp [Ashbya gossypii ATCC 10895]
gi|299789245|gb|AAS52594.2| AEL091Cp [Ashbya gossypii ATCC 10895]
Length = 609
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 155/264 (58%), Gaps = 9/264 (3%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +KPY+F + + K RW + ++D+F +EF+ R YY + G + ++ + +
Sbjct: 107 RKIKPYFFTYKTFCKERWRDRKLLDVFVDEFRDRDRPYYEKVIGSGGVLLNGKSSTLDSV 166
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ ISH LHRHEPPV + + + ++ D+L + KP +P HP G+YR N++ IL+
Sbjct: 167 LRNGDLISHELHRHEPPVSSRPIRTVYEDDDILVIDKPSGIPAHPTGRYRFNSITKILEK 226
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ + P +RLDRL SGL+ LA+ AD Q++A +V K Y+ARV G FP GE V
Sbjct: 227 QLGYT-VHPCNRLDRLTSGLMFLAKTPKGADEMGDQMKAREVKKEYVARVVGEFPIGEIV 285
Query: 240 VDVNINYNAS--AGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTH 297
VD+ + A + D GK A T+F RIS +G SIV C+P TGRTH
Sbjct: 286 VDMPLKTIEPKLALNMVCDPEDE------AGKGAKTQFKRISYDGQTSIVKCQPYTGRTH 339
Query: 298 QIRVHLQYTGYPIANDMLYLCEHV 321
QIRVHLQY G+PIAND +Y H+
Sbjct: 340 QIRVHLQYLGFPIANDPIYSNPHI 363
>gi|254578372|ref|XP_002495172.1| ZYRO0B05082p [Zygosaccharomyces rouxii]
gi|238938062|emb|CAR26239.1| ZYRO0B05082p [Zygosaccharomyces rouxii]
Length = 611
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 177/322 (54%), Gaps = 23/322 (7%)
Query: 2 KRKREEEKSKANDSNSNGNGNGNGNG------NGNGNSSNNMEIVWQTPANPPVKEDYIF 55
KRK+ E SK+ + + N + NG N S ++ ++ + P+
Sbjct: 50 KRKQIESSSKSQKTKAQTNELRDENGFKLRVVEVNNKRSRQVDPDYEVVVDGPL------ 103
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
R + PYYF + + K RW + + ++F +EF+ R DYY + G + +++E
Sbjct: 104 ----RRITPYYFTYQTFCKLRWRDRNLFEVFCDEFRDRDQDYYRKTIAGGSVYLNDEPAN 159
Query: 116 VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+ +++ I H +HRHEPPV + + ++ ++ ++L + KP +PVHP G+YR NT+
Sbjct: 160 LESIIRNGDCIRHKIHRHEPPVTSRPIKVVYEDENLLVIDKPSGIPVHPTGRYRFNTITK 219
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL+ + + P +RLDRL SGL+ +A+ AD Q++A +V K Y+ARV G FP
Sbjct: 220 ILEKKLGRT-VHPCNRLDRLTSGLMFMAKTPKGADEMADQLKAREVTKEYVARVVGEFPV 278
Query: 236 GEQVVDVNI-NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITG 294
GE VVD + + G + D G K A T F R+S +G SIV C+P+TG
Sbjct: 279 GEVVVDNPLKSLEPKLGLNVVCGMDEEG-----AKHAKTVFRRVSYDGETSIVKCKPLTG 333
Query: 295 RTHQIRVHLQYTGYPIANDMLY 316
RTHQIRVHLQY G+PIAND +Y
Sbjct: 334 RTHQIRVHLQYLGHPIANDPIY 355
>gi|51012815|gb|AAT92701.1| YDL036C [Saccharomyces cerevisiae]
Length = 462
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 157/263 (59%), Gaps = 7/263 (2%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +KPY+F + + K RW K +VD+F EF+ R +YY ++ G + +++E +S
Sbjct: 106 RKIKPYHFTYRTFCKERWRDKKLVDVFISEFRDRESEYYKRTIENGDVHINDETADLSTV 165
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ I+H +HRHEPPV + + ++ ++ +++ + KP +PVHP G+YR NT+ +LQ
Sbjct: 166 IRNGDLITHQVHRHEPPVTSRPIKVIFEDDNIMVIDKPSGIPVHPTGRYRFNTITKMLQN 225
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ P +RLDRL SGL+ LA+ AD Q++A +V K Y+A+V G FPE E +
Sbjct: 226 NLGFV-VNPCNRLDRLTSGLMFLAKTPKGADNIGDQLKAREVTKEYVAKVVGEFPETEVI 284
Query: 240 VDVNINY-NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
V+ + + D G K A T F RIS +G SIV C+P+TGR+HQ
Sbjct: 285 VEKPLKLIEPRLALNAVCQMDEKG-----AKHAKTVFNRISYDGKTSIVKCKPLTGRSHQ 339
Query: 299 IRVHLQYTGYPIANDMLYLCEHV 321
IRVHLQY G+PIAND +Y + V
Sbjct: 340 IRVHLQYLGHPIANDPIYSNDEV 362
>gi|254564943|ref|XP_002489582.1| DRAP deaminase, catalyzes the third step of the riboflavin
biosynthesis pathway [Komagataella pastoris GS115]
gi|238029378|emb|CAY67301.1| DRAP deaminase, catalyzes the third step of the riboflavin
biosynthesis pathway [Komagataella pastoris GS115]
gi|328350006|emb|CCA36406.1| DRAP deaminase [Komagataella pastoris CBS 7435]
Length = 547
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 117/324 (36%), Positives = 176/324 (54%), Gaps = 23/324 (7%)
Query: 35 NNMEIVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRP 94
N + I + +DY+ G R V PYYF F++H K RW + ++++F EF+ +P
Sbjct: 29 NGVSIFEEESQGASYIKDYV--HGLRRVTPYYFTFLTHCKERWQDRKLIEVFKSEFRMKP 86
Query: 95 YDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTV 154
+ YY +A+ G +++++++ V +++ ISH +HRHEPPV ++ I ++ ++ +
Sbjct: 87 FSYYYNAIANGEVKLNDQVANVDSVLRNGDLISHRIHRHEPPVTLDEIEIAYEDDEITVI 146
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQ 214
KP +PVHP G+YR N++ I++ E +RLDRL SG++ L + A K Q
Sbjct: 147 NKPSGIPVHPTGRYRHNSITMIMKQEMGTIA-HTCNRLDRLTSGIMFLGKTAMKTAKMVQ 205
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAA 271
QI+ V K YIA+ G FP G QVVD + I+ + E GK A
Sbjct: 206 QIKERNVGKVYIAKCKGKFPLGLQVVDKPLLTIDPRLTFNLVDLED----------GKEA 255
Query: 272 CTKFTRIS--TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSA 329
T F RIS T SIV C P+TGRTHQIRVHLQ+ GYPIAND +Y +V G++
Sbjct: 256 KTLFRRISYDTKDNTSIVKCMPLTGRTHQIRVHLQFIGYPIANDPVYSSPYVW---GLTL 312
Query: 330 DRAAAYSHHSPPPVSSDKSESSSE 353
+ + H P + SE S +
Sbjct: 313 GK--GFLHKENPGYLKEVSERSEK 334
>gi|349577040|dbj|GAA22209.1| K7_Pus9p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 462
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 157/263 (59%), Gaps = 7/263 (2%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +KPY+F + + K RW K +VD+F EF+ R +YY ++ G + +++E +S
Sbjct: 106 RKIKPYHFTYRTFCKERWRDKKLVDVFISEFRDRESEYYKRTIENGDVHINDETADLSTV 165
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ I+H +HRHEPPV + + ++ ++ +++ + KP +PVHP G+YR NT+ +LQ
Sbjct: 166 IRNGDLITHQVHRHEPPVTSRPIKVIFEDDNIMVIDKPSGIPVHPTGRYRFNTITKMLQN 225
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ P +RLDRL SGL+ LA+ AD Q++A +V K Y+A+V G FPE E +
Sbjct: 226 NLGFV-VNPCNRLDRLTSGLMFLAKTPKGADNIGDQLKAREVTKEYVAKVVGEFPETEVI 284
Query: 240 VDVNINY-NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
V+ + + D G K A T F RIS +G SIV C+P+TGR+HQ
Sbjct: 285 VEKPLKLIEPRLALNAVCQMDEKG-----AKHAKTVFNRISYDGKTSIVKCKPLTGRSHQ 339
Query: 299 IRVHLQYTGYPIANDMLYLCEHV 321
IRVHLQY G+PIAND +Y + V
Sbjct: 340 IRVHLQYLGHPIANDPIYSNDEV 362
>gi|126139263|ref|XP_001386154.1| DRAP deaminase [Scheffersomyces stipitis CBS 6054]
gi|126093436|gb|ABN68125.1| DRAP deaminase [Scheffersomyces stipitis CBS 6054]
Length = 585
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/269 (42%), Positives = 160/269 (59%), Gaps = 16/269 (5%)
Query: 53 YIFRDGR-RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
YI DGR R V PYYF ++++ K RW + ++D+F +EF+ R +YY A+ G++ +++
Sbjct: 78 YII-DGRLRRVHPYYFTYLTYCKMRWRDRKLLDIFVDEFRDRSAEYYKKAIDAGQVTLNK 136
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
+ + V++ ISH +R EPPV + ++ I+ ++ D++ + KP +PVHP G+YR N
Sbjct: 137 KPANLDSIVRNGDLISHRTYRKEPPVSSREIKIVYEDDDLIAIDKPSGIPVHPTGRYRYN 196
Query: 172 TVVGILQAEHDLAPLF-PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
T+ I Q H++ + P +RLDRL SGL+ L + A AD +QI V K YIARV
Sbjct: 197 TITKIFQ--HEMGKVVHPCNRLDRLTSGLMFLGKTAKGADKLVKQIRERSVRKEYIARVK 254
Query: 231 GVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK-GKAACTKFTRISTNGTH--SIV 287
G FP E VD + T L LK GK A T F R+S + H SIV
Sbjct: 255 GEFPLEEVEVDQPMR--------TIAHKLGLNRIDLKEGKDAKTAFKRVSYDPEHDTSIV 306
Query: 288 LCEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQY G+PIAND +Y
Sbjct: 307 KCIPLTGRTHQIRVHLQYLGHPIANDPIY 335
>gi|6320168|ref|NP_010248.1| pseudouridine synthase PUS9 [Saccharomyces cerevisiae S288c]
gi|3915436|sp|Q12069.1|PUS9_YEAST RecName: Full=tRNA pseudouridine(32) synthase, mitochondrial;
AltName: Full=tRNA pseudouridine synthase 9; AltName:
Full=tRNA pseudouridylate synthase 9; AltName:
Full=tRNA-uridine isomerase 9; Flags: Precursor
gi|1279680|emb|CAA96453.1| unknown [Saccharomyces cerevisiae]
gi|1431018|emb|CAA98595.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285810994|tpg|DAA11818.1| TPA: pseudouridine synthase PUS9 [Saccharomyces cerevisiae S288c]
Length = 462
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 157/263 (59%), Gaps = 7/263 (2%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +KPY+F + + K RW K +VD+F EF+ R +YY ++ G + +++E +S
Sbjct: 106 RKIKPYHFTYRTFCKERWRDKKLVDVFISEFRDRESEYYKRTIENGDVHINDETADLSTV 165
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ I+H +HRHEPPV + + ++ ++ +++ + KP +PVHP G+YR NT+ +LQ
Sbjct: 166 IRNGDLITHQVHRHEPPVTSRPIKVIFEDDNIMVIDKPSGIPVHPTGRYRFNTITKMLQN 225
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ P +RLDRL SGL+ LA+ AD Q++A +V K Y+A+V G FPE E +
Sbjct: 226 NLGFV-VNPCNRLDRLTSGLMFLAKTPKGADNIGDQLKAREVTKEYVAKVVGEFPETEVI 284
Query: 240 VDVNINY-NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
V+ + + D G K A T F RIS +G SIV C+P+TGR+HQ
Sbjct: 285 VEKPLKLIEPRLALNAVCQMDEKG-----AKHAKTVFNRISYDGKTSIVKCKPLTGRSHQ 339
Query: 299 IRVHLQYTGYPIANDMLYLCEHV 321
IRVHLQY G+PIAND +Y + V
Sbjct: 340 IRVHLQYLGHPIANDPIYSNDEV 362
>gi|151941961|gb|EDN60317.1| tRNA-pseudouridine synthase [Saccharomyces cerevisiae YJM789]
Length = 462
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 157/263 (59%), Gaps = 7/263 (2%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +KPY+F + + K RW K +VD+F EF+ R +YY ++ G + +++E +S
Sbjct: 106 RKIKPYHFTYRTFCKERWRDKKLVDVFISEFRDRESEYYKRTIENGDVHINDETADLSTV 165
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ I+H +HRHEPPV + + ++ ++ +++ + KP +PVHP G+YR NT+ +LQ
Sbjct: 166 IRNGDLITHQVHRHEPPVTSRPIKVIFEDDNIMVIDKPSGIPVHPTGRYRFNTITKMLQN 225
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ P +RLDRL SGL+ LA+ AD Q++A +V K Y+A+V G FPE E +
Sbjct: 226 NLGFV-VNPCNRLDRLTSGLMFLAKTPKGADNIGDQLKAREVTKEYVAKVVGEFPETEVI 284
Query: 240 VDVNINY-NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
V+ + + D G K A T F RIS +G SIV C+P+TGR+HQ
Sbjct: 285 VEKPLKLIEPRLALNAVCQMDEKG-----AKHAKTVFNRISYDGKTSIVKCKPLTGRSHQ 339
Query: 299 IRVHLQYTGYPIANDMLYLCEHV 321
IRVHLQY G+PIAND +Y + V
Sbjct: 340 IRVHLQYLGHPIANDPIYSNDEV 362
>gi|320168624|gb|EFW45523.1| RNA pseudouridylate synthase domain-containing protein 2
[Capsaspora owczarzaki ATCC 30864]
Length = 515
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/263 (41%), Positives = 155/263 (58%), Gaps = 12/263 (4%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
RDG R VKPY F F+++ K RW G +++LF EF+ Y+ A++ GR+ V+ ++V
Sbjct: 101 RDGLRFVKPYLFRFVAYAKRRWIGLGLLELFRREFRVETPAYFDQAIRDGRVTVNGKVVA 160
Query: 116 VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
SY ++ S + H HRHEPPV A + ++ + D++ + KP S+PVH G++ +TV+
Sbjct: 161 PSYIIQDSDVLVHTAHRHEPPVTAAPIRVIAETDDLVVIDKPASIPVHVAGRFNVHTVIS 220
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
I+++E + L HRLDRL SG+L++A+N + A + I +V K YI RV GVFP+
Sbjct: 221 IMKSEMGYSNLLGCHRLDRLTSGVLVMAKNRAAAAAVTRLITEREVEKFYICRVTGVFPQ 280
Query: 236 GEQVVDVN--INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPIT 293
EQV +++ G L GK A T F R TNG SIV C P T
Sbjct: 281 -EQVTCTEPLLSFCPKFG---------LNGVDPSGKPAETVFVREQTNGVISIVKCFPKT 330
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GR HQIRVHLQY GYPI ND +Y
Sbjct: 331 GRAHQIRVHLQYLGYPIENDPIY 353
>gi|259145207|emb|CAY78471.1| Pus9p [Saccharomyces cerevisiae EC1118]
Length = 462
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 157/263 (59%), Gaps = 7/263 (2%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +KPY+F + + K RW K +VD+F EF+ R +YY ++ G + +++E +S
Sbjct: 106 RKIKPYHFTYRTFCKERWRDKKLVDVFISEFRDRESEYYKRTIENGDVHINDETADLSTV 165
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ I+H +HRHEPPV + + ++ ++ +++ + KP +PVHP G+YR NT+ +LQ
Sbjct: 166 IRNGDLITHQVHRHEPPVTSRPIKVIFEDDNIMVIDKPSGIPVHPTGRYRFNTITKMLQN 225
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ P +RLDRL SGL+ LA+ AD Q++A +V K Y+A+V G FPE E +
Sbjct: 226 NLGFV-VNPCNRLDRLTSGLMFLAKTPKGADNIGDQLKAREVTKEYVAKVVGEFPETEVI 284
Query: 240 VDVNINY-NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
V+ + + D G K A T F RIS +G SIV C+P+TGR+HQ
Sbjct: 285 VEKPLKLIEPRLALNAVCQMDEKG-----AKHAKTVFNRISYDGKTSIVKCKPLTGRSHQ 339
Query: 299 IRVHLQYTGYPIANDMLYLCEHV 321
IRVHLQY G+PIAND +Y + V
Sbjct: 340 IRVHLQYLGHPIANDPIYSNDEV 362
>gi|396477094|ref|XP_003840194.1| hypothetical protein LEMA_P109800.1 [Leptosphaeria maculans JN3]
gi|312216765|emb|CBX96715.1| hypothetical protein LEMA_P109800.1 [Leptosphaeria maculans JN3]
Length = 791
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 176/312 (56%), Gaps = 46/312 (14%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P Y DG R VKPY+F + ++ K RW G+ I+++FA+EF+ RP +YY A+
Sbjct: 65 TPCDP-WPPPYYLEDGLRKVKPYHFTYNTYCKQRWRGREILEIFADEFRDRPKEYYEQAI 123
Query: 103 KCGRIQVDEEMVPVSYT-VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
K GR+ V+ + VP + T +K+ ISH LHRHEPP A + I+ ++ D++ + KP +P
Sbjct: 124 KDGRVVVNGKPVPSTSTMIKNGDVISHTLHRHEPPCTAQPIGIVHEDNDLIVINKPAGMP 183
Query: 162 VHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
VHP G+Y N+++ I++A+ ++ PL P +RLDRL SG++ + ++ A+ QI
Sbjct: 184 VHPAGRYNFNSIIEIMRADRGYNWNPL-PCNRLDRLTSGIMFIGKHRKAAEHMSAQIRGR 242
Query: 220 KVIKRYIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFT 276
V K YI RV G FPEGE V + + I+ R A+ GK A T F
Sbjct: 243 TVKKEYITRVVGEFPEGEVVCEKPILQISPKLGLNRVRAD-----------GKEAFTVFK 291
Query: 277 RIS--------------------TNGT-------HSIVLCEPITGRTHQIRVHLQYTGYP 309
R++ ++G +SIV C P+TGRTHQ+RVHLQ+ G+P
Sbjct: 292 RLAYYPPKEEEAPPEKDARGKADSDGQPWKRLRGYSIVRCFPVTGRTHQLRVHLQFLGHP 351
Query: 310 IANDMLYLCEHV 321
I+ND +Y + V
Sbjct: 352 ISNDPIYANQRV 363
>gi|190405049|gb|EDV08316.1| tRNA pseudouridine synthase [Saccharomyces cerevisiae RM11-1a]
Length = 462
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 157/263 (59%), Gaps = 7/263 (2%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +KPY+F + + K RW K +VD+F EF+ R +YY ++ G + +++E +S
Sbjct: 106 RKIKPYHFTYRTFCKERWRDKKLVDVFISEFRDRESEYYKRTIENGDVHINDETADLSTV 165
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ I+H +HRHEPPV + + ++ ++ +++ + KP +PVHP G+YR NT+ +LQ
Sbjct: 166 IRNGDLITHQVHRHEPPVTSRPIKVIFEDDNIMVIDKPSGIPVHPTGRYRFNTITKMLQN 225
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ P +RLDRL SGL+ LA+ AD Q++A +V K Y+A+V G FPE E +
Sbjct: 226 NLGFV-VNPCNRLDRLTSGLMFLAKTPRGADNIGDQLKAREVTKEYVAKVVGEFPETEVI 284
Query: 240 VDVNINY-NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
V+ + + D G K A T F RIS +G SIV C+P+TGR+HQ
Sbjct: 285 VEKPLKLIEPRLALNAVCQMDEKG-----AKHAKTVFNRISYDGKTSIVKCKPLTGRSHQ 339
Query: 299 IRVHLQYTGYPIANDMLYLCEHV 321
IRVHLQY G+PIAND +Y + V
Sbjct: 340 IRVHLQYLGHPIANDPIYSNDEV 362
>gi|326480203|gb|EGE04213.1| DRAP deaminase [Trichophyton equinum CBS 127.97]
Length = 517
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 169/300 (56%), Gaps = 27/300 (9%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P + YI + G R V PYY+ + ++ K RW GK ++D+++ EF+ RP YY +A+
Sbjct: 25 TPCDPWPRPYYIEK-GLRRVAPYYYTYNTYCKERWRGKNLLDIYSTEFRDRPNGYYKAAI 83
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
GRI +D ++ + + Q ISH LHRHEPPV + + I+ ++ D++ + KP +PV
Sbjct: 84 DGGRITIDGKVATADSIINNGQVISHTLHRHEPPVTSRPIKIIHEDEDIIVIDKPAGIPV 143
Query: 163 HPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
HP G+Y N+++ I+++E L + +P +RLDRL SG++ L ++ A+ Q + + +
Sbjct: 144 HPAGRYNYNSIIEIMRSERGLGWIPYPCNRLDRLTSGIMFLGKHPKSAEQMAQSLRSRTL 203
Query: 222 IKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTA----------------E 256
K YIARV G FP+G + D + +N + G+ +
Sbjct: 204 RKEYIARVKGYFPDGVVLCDQPMLKVSPILGLNRVRATGKDAQTKFRRIAYYPPVEKENK 263
Query: 257 SGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+G++ G +A+ + +SIV C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 264 NGETTGSQGPDSRASTPPPLPADVDEGYSIVHCLPLTGRTHQIRVHLQFLGHPITNDPIY 323
>gi|190347088|gb|EDK39300.2| hypothetical protein PGUG_03398 [Meyerozyma guilliermondii ATCC
6260]
Length = 611
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/263 (42%), Positives = 156/263 (59%), Gaps = 11/263 (4%)
Query: 57 DGR-RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
DGR R V PY+F ++++ K RW + ++D+F +EF+ R D+Y +A+ G + ++ +
Sbjct: 104 DGRLRRVSPYFFTYLTYCKLRWRDRKLIDIFCDEFRDRDQDFYKAAISEGSVTLNRKPAN 163
Query: 116 VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+ V++ ISH HRHEP V + + I+ ++ DV+ + KP +PVHP G+YR NT+
Sbjct: 164 IDSIVRNGDLISHRCHRHEPAVSSRPIKIVHEDDDVIAIDKPSGIPVHPVGRYRYNTITK 223
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
I Q E + P +RLDRL SGL+ L + AD F QQI+ V K YIARV G FP
Sbjct: 224 IFQHEFGRV-VHPCNRLDRLTSGLMFLGKTPKGADKFVQQIKDRTVRKEYIARVIGKFPC 282
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN--GTHSIVLCEPIT 293
E V+V I + + T D P GK A TKF RIS + SIV C P+T
Sbjct: 283 EEITVEVPI--KTVSPKHTLNMVD-----PKNGKEAKTKFKRISYDPASNTSIVKCYPLT 335
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GRTHQIRVHLQ+ G+ IAND +Y
Sbjct: 336 GRTHQIRVHLQHIGHAIANDPIY 358
>gi|340514260|gb|EGR44525.1| predicted protein [Trichoderma reesei QM6a]
Length = 465
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 181/331 (54%), Gaps = 38/331 (11%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TPA Y+F D R V PY+F + ++ K RW G++++D+F EF+ RP +YY +++
Sbjct: 23 TPAGDIWPRPYVFEDDLRRVLPYHFTYNTYCKERWRGRSLIDIFESEFRDRPVEYYRNSM 82
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
G I V+ +V Y V++ ISH LHRHEPPV A + I+ ++ D++ + KP VPV
Sbjct: 83 VRGDIYVNGRVVGPDYIVRNGDLISHTLHRHEPPVTAEPIGIIHEDDDIIVINKPSGVPV 142
Query: 163 HPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
HP G+Y N+V+ I+ AE D P +P +RLDRL SG++ +A++ A+ +I
Sbjct: 143 HPAGRYNFNSVIEIMIAERGRDFMP-YPCNRLDRLTSGIMFIAKSVKAAEAMAIKIRGRT 201
Query: 221 VIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRST-----------AESGDS 260
V K Y+ARV G FP+GE V D + +N + G+S GD+
Sbjct: 202 VRKEYLARVVGHFPDGEVVCDQPILQISPKLGLNRVRANGKSARTVFKRLAYYPPRDGDA 261
Query: 261 -----LGD-----TPL--KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGY 308
LG+ TP +G + T +SIV C P+TGRTHQ+RVHLQY G+
Sbjct: 262 DEPAVLGEDGRPSTPANEEGCVGDEQRTPWLKKKGYSIVRCLPVTGRTHQLRVHLQYLGH 321
Query: 309 PIANDMLYLCEHVTHREGMSADRAAAYSHHS 339
PI ND +Y + V G++ +A A H+
Sbjct: 322 PIQNDPIYANQRVW---GLNLGQADADGSHN 349
>gi|50285951|ref|XP_445404.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524708|emb|CAG58310.1| unnamed protein product [Candida glabrata]
Length = 584
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 156/258 (60%), Gaps = 6/258 (2%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R V+PY FE+ + K RW + I+D+F +EF+ + D+Y + G + V+ + +
Sbjct: 81 RRVEPYEFEYKTFCKERWRDRKIIDIFTQEFRDQEPDHYRKTIAKGAVSVNGKPANLETI 140
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ + I+H +HRHEPPV + + I+ + D+L + KP +PVHP G+YR NT+ IL+
Sbjct: 141 LRNGEMITHKMHRHEPPVTSRPIKIVFENDDILVIDKPGGIPVHPTGRYRYNTITKILEK 200
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ + + P +RLDRL SGL+ LA+ AD Q++ +V K YIARV G FP GE
Sbjct: 201 QMKRS-VHPCNRLDRLTSGLMFLAKTPEGADQMADQMKTREVTKEYIARVVGEFPTGEIT 259
Query: 240 VDVNI-NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
V+ + +Y+ + + D K A T F RIS +G SIV C+P+TGRTHQ
Sbjct: 260 VEKPLKSYDPKVSLNIICDDTNEDD----AKPAKTVFQRISFDGQTSIVKCKPLTGRTHQ 315
Query: 299 IRVHLQYTGYPIANDMLY 316
IRVHLQ+ G+PIAND +Y
Sbjct: 316 IRVHLQFLGHPIANDPIY 333
>gi|302663414|ref|XP_003023349.1| hypothetical protein TRV_02451 [Trichophyton verrucosum HKI 0517]
gi|291187343|gb|EFE42731.1| hypothetical protein TRV_02451 [Trichophyton verrucosum HKI 0517]
Length = 517
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 169/300 (56%), Gaps = 27/300 (9%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P + YI + G R V PYY+ + ++ K RW GK ++D+++ EF+ RP YY +A+
Sbjct: 25 TPCDPWPRPYYIEK-GLRRVAPYYYTYNTYCKERWRGKNLLDIYSTEFRDRPNGYYKAAI 83
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
GRI +D ++ + + Q ISH LHRHEPPV + + I+ ++ D++ + KP +PV
Sbjct: 84 DGGRITIDGKVATADSIINNGQVISHTLHRHEPPVTSRPIKIIHEDEDIIVIDKPAGIPV 143
Query: 163 HPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
HP G+Y N+++ I+++E L + +P +RLDRL SG++ L ++ A+ Q + + +
Sbjct: 144 HPAGRYNYNSIIEIMRSERGLGWIPYPCNRLDRLTSGIMFLGKHPKAAEQMAQSLRSRTL 203
Query: 222 IKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTA----------------E 256
K YIARV G FP+G + D + +N + G+ +
Sbjct: 204 RKEYIARVKGYFPDGVVLCDQPMLKVSPILGLNRVRATGKDAQTKFRRIAYYPPVEKEDK 263
Query: 257 SGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+G++ G +A+ + +SIV C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 264 NGEATGSQGPDSRASTPPPLPADVDEGYSIVHCLPLTGRTHQIRVHLQFLGHPITNDPIY 323
>gi|302417027|ref|XP_003006345.1| pseudouridine synthase [Verticillium albo-atrum VaMs.102]
gi|261355761|gb|EEY18189.1| DRAP deaminase [Verticillium albo-atrum VaMs.102]
Length = 549
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 117/304 (38%), Positives = 164/304 (53%), Gaps = 25/304 (8%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP P Y+ DG R V+PYY F ++ K RW G+T++D+F+ EF+ R +YY +
Sbjct: 115 TPLEGPWPRPYVIEDGLRKVEPYYHTFNTYCKERWRGRTLIDVFSCEFRDRTPEYYRKCM 174
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
G+I + ++V Y +++ +SH HRHEPPV A ++++ ++ D L V KP VPV
Sbjct: 175 DDGKIAANGKVVGADYVIRNGDLVSHTSHRHEPPVTAEPIAVIHEDNDYLIVNKPAGVPV 234
Query: 163 HPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
HP G+Y N+VV IL++E + P HRLDRL SG+L + A A +QI+A V
Sbjct: 235 HPAGRYNFNSVVEILKSERGAHFMPRPCHRLDRLTSGILCFGKTAQAATDLSRQIQARMV 294
Query: 222 IKRYIARVNGVFPEGEQVVD----------------VNINYNASAGRSTAESGDSLGDT- 264
K Y+ARV G FP+GE V D N + + + A L D
Sbjct: 295 RKEYVARVIGHFPDGEVVCDQPLLQISPRLGLNRVRANGKFARTVFKRLAYYPPPLSDVD 354
Query: 265 ------PLKGKAACTKFTRIST-NGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYL 317
P + A + R T +SIV C P+TGRTHQIRVHLQ+ GYPI ND +Y
Sbjct: 355 GGPEQRPKTPEEAADEEQRPWTAKKGYSIVRCLPLTGRTHQIRVHLQFLGYPIQNDPIYA 414
Query: 318 CEHV 321
+ V
Sbjct: 415 NQRV 418
>gi|358395137|gb|EHK44530.1| hypothetical protein TRIATDRAFT_293719 [Trichoderma atroviride IMI
206040]
Length = 518
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 168/312 (53%), Gaps = 34/312 (10%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TPA Y+F D R VKPY+F + ++ K RW G++++D+F EF+ RP +YY +++
Sbjct: 85 TPAGDIWPRPYVFEDDLRRVKPYHFTYNTYCKERWRGRSLIDIFESEFRDRPVEYYRNSM 144
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
G I V+ +V Y V++ ISH LHRHEPPV A + I+ ++ D++ + KP VPV
Sbjct: 145 VRGDIYVNGRVVGPDYIVRNGDMISHTLHRHEPPVTAEPIGIIHEDADIIVINKPSGVPV 204
Query: 163 HPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
HP G+Y N+V+ I+ AE D P P +RLDRL SG++ +A++ A+ +I
Sbjct: 205 HPAGRYNFNSVIEIMVAERGRDFLP-HPCNRLDRLTSGIMFIAKSVKSAEAMAIKIRGRT 263
Query: 221 VIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLGDTPLK---- 267
V K Y+ARV G FP+GE V D + +N + G+S L P +
Sbjct: 264 VRKEYLARVVGHFPDGEVVCDQPILQISPKLGLNRVRANGKSARTVFKRLAYYPPRDGDA 323
Query: 268 ---------GKAACTKFTRISTN---------GTHSIVLCEPITGRTHQIRVHLQYTGYP 309
GK I + +SIV C P+TGRTHQ+RVHLQY G+P
Sbjct: 324 EEPAVLAEDGKPVAPADKEILDDERSKPWLQKKGYSIVRCLPVTGRTHQLRVHLQYLGHP 383
Query: 310 IANDMLYLCEHV 321
I ND +Y + V
Sbjct: 384 IQNDPIYANQRV 395
>gi|322697720|gb|EFY89497.1| DRAP deaminase [Metarhizium acridum CQMa 102]
Length = 512
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 174/316 (55%), Gaps = 59/316 (18%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F D R V+PY++ + ++ K RW G++++++F EF+ RP +YY ++++ G I V+
Sbjct: 68 YYFEDDLRRVRPYHWTYNTYCKERWRGRSLIEIFESEFRDRPAEYYRTSMETGDIFVNGT 127
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
V Y +++ ISH LHRHEPPV + V I+ ++ D++ + KP VPVHP G+Y+ N+
Sbjct: 128 RVGPDYILRNGDLISHTLHRHEPPVTSDPVGIIHEDEDMIVINKPSGVPVHPAGRYKFNS 187
Query: 173 VVGILQAEH--DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
V+ I++AE + P +P +RLDRL SG++ +A++ A+ QI++ V K Y+ARV
Sbjct: 188 VLEIMKAERGPEFMP-YPCNRLDRLTSGIMFVAKSVKAAEALGNQIKSRTVRKEYMARVV 246
Query: 231 GVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRIS-------- 279
G FPEGE V D ++I+ R AE GKAA T F R++
Sbjct: 247 GEFPEGEIVCDQPILSISPKLGLNRVRAE-----------GKAARTVFKRLAYYPPRAHA 295
Query: 280 ---------------------------TNGT-------HSIVLCEPITGRTHQIRVHLQY 305
+NG +SIV C P+TGRTHQIRVHLQY
Sbjct: 296 EANGQQGGVPEPTDKELSRLPAEEGDESNGKPWINKRGYSIVRCLPVTGRTHQIRVHLQY 355
Query: 306 TGYPIANDMLYLCEHV 321
G+PI ND +Y + V
Sbjct: 356 LGHPIQNDPIYANQRV 371
>gi|50312303|ref|XP_456184.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645320|emb|CAG98892.1| KLLA0F24794p [Kluyveromyces lactis]
Length = 597
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 155/263 (58%), Gaps = 7/263 (2%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R + PY+F + + K RW + ++D+F +EF+ R +YY + G++ +++ + +
Sbjct: 90 RKIVPYFFTYKTFCKERWRDRKLIDIFIDEFRDRSPEYYRKTIAAGKVYLNDSVADLDSV 149
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
V++ I+H +HRHEP V + + + ++ D+L + KP +PVHP G+YR NTV IL+
Sbjct: 150 VRNGDLITHEIHRHEPSVTSRLIKTVFEDDDLLVIDKPSGIPVHPTGRYRFNTVTKILEK 209
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
E + P +RLDRL SGL+ LA+N AD Q++A +V K Y+ARV G FP G V
Sbjct: 210 ERGYT-VHPCNRLDRLTSGLMFLAKNPRGADRMADQMKAREVSKEYVARVVGEFPVGLIV 268
Query: 240 VDVNI-NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
VD + + G + G K A T F RIS +G SIV C+P TGRTHQ
Sbjct: 269 VDKPLRTVDPKVGLNVTCKITDEG-----AKEARTSFERISFDGKTSIVRCKPFTGRTHQ 323
Query: 299 IRVHLQYTGYPIANDMLYLCEHV 321
IRVHLQ+ G+PIAND +Y H+
Sbjct: 324 IRVHLQHLGHPIANDPIYSNPHI 346
>gi|326919876|ref|XP_003206203.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Meleagris gallopavo]
Length = 479
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 165/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYY++F ++ K RW G++++ +F+ EF+ +P YY +A + GR++++EE
Sbjct: 60 YYFEGGLRKVRPYYYDFRTYCKGRWVGRSLLHVFSTEFRSQPLAYYRAAARAGRLRLNEE 119
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V + +K++ + + +HRHEPPV A + IL + +V+ V KP S+PVHPCG++R N
Sbjct: 120 PVQDLDVVLKNNDFLRNTVHRHEPPVTAQPIQILVENDEVVVVDKPSSLPVHPCGRFRHN 179
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH+L L +HRLDR+ SG+L+ A+ + +Q+ ++ K Y+ RV G
Sbjct: 180 TVIFILGKEHNLKELHTIHRLDRMTSGVLMFAKTVEVSKRIDEQVRERQLEKEYVCRVVG 239
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FPE E V + + ++Y R KGK T F R+S NG S+V
Sbjct: 240 EFPEHEVVCEEPILVVSYKVGVCRVDP-----------KGKCCKTIFQRLSYNGKSSVVK 288
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P TGRTHQIRVHLQY GYPI ND +Y
Sbjct: 289 CLPHTGRTHQIRVHLQYLGYPIVNDPIY 316
>gi|213403308|ref|XP_002172426.1| pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|212000473|gb|EEB06133.1| DRAP deaminase [Schizosaccharomyces japonicus yFS275]
Length = 401
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 108/274 (39%), Positives = 157/274 (57%), Gaps = 8/274 (2%)
Query: 44 PANPPVKEDYIF-RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
P +P Y++ DG R V PY + +I+ K RW GKT++++F EF+ R YY A+
Sbjct: 6 PRDPLENCQYVYLNDGLRRVPPYEYVYITFAKLRWYGKTLLEVFNSEFRDREPGYYERAI 65
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G+++V+ E V +++ ISH HRHEPPV V I+ ++ + + + KP +PV
Sbjct: 66 RNGQVKVNNEPGNVDTVIQNGYVISHAAHRHEPPVTDEPVRIVHEDEEYVVIDKPAGIPV 125
Query: 163 HPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVI 222
HP G+Y NTV+ IL E+ L+P +RLDRL SGL+ ++ A+ R + + +
Sbjct: 126 HPTGRYNHNTVLHILMHENKCPLLYPCNRLDRLTSGLMFFSKTPKGAERMRVHMISKDLQ 185
Query: 223 KRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNG 282
K Y+ARV G FP + + A T L GK A T F R++ +G
Sbjct: 186 KEYVARVVGEFPAEKTI-------TCDAKLLTVAPTLGLNRVHPDGKDAVTIFKRLAFDG 238
Query: 283 THSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
S+V C+P+TGRTHQIRVHLQY GYPIAND +Y
Sbjct: 239 HTSLVHCKPLTGRTHQIRVHLQYLGYPIANDPIY 272
>gi|405966308|gb|EKC31608.1| RNA pseudouridylate synthase domain-containing protein 2 [Crassostrea
gigas]
Length = 1335
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 150/270 (55%), Gaps = 12/270 (4%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFK-GRPYDYYVSAVKCGRIQVD 110
+Y F +G R V PY++ F + VK RW +T+ D+F EF + YD + VK G I V+
Sbjct: 899 EYYFENGLRKVYPYFYAFSTFVKGRWFKRTLCDIFTTEFSLAKEYDVE-TLVKEGHITVN 957
Query: 111 EEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRK 170
V + Y +K + + +HRHE PV + +++ D++ V KP S+P HPCG YR
Sbjct: 958 GRAVSLDYKIKQGDIVENNIHRHENPVTGERIEVIEDNKDLIVVNKPSSIPCHPCGGYRY 1017
Query: 171 NTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
N+++ IL E A L +RLDRL SG+L +N + + I V K Y+ RV
Sbjct: 1018 NSMIFILGKELGYANLRTAYRLDRLTSGVLFFTKNEAATRKYIDDITNRNVEKVYVCRVE 1077
Query: 231 GVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCE 290
G FPEGE V + I S+ G+ GK + T FTR+S NG S+V C+
Sbjct: 1078 GEFPEGEVVCEQPI-AKVSSKLGIMRCGED-------GKPSKTTFTRLSYNGKTSVVQCK 1129
Query: 291 PITGRTHQIRVHLQYTGYPIANDMLY--LC 318
P TGRTHQIRVHLQY G+PI ND Y LC
Sbjct: 1130 PHTGRTHQIRVHLQYLGFPIVNDPCYNSLC 1159
>gi|380479131|emb|CCF43201.1| RluA family pseudouridine synthase [Colletotrichum higginsianum]
Length = 477
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 168/313 (53%), Gaps = 25/313 (7%)
Query: 33 SSNNMEIVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKG 92
+S V TP Y F DG R V PY+F + + K RW G+ +VD+F +EF+
Sbjct: 35 ASETQSDVLTTPTGDMWPRPYYFEDGLRRVAPYHFTYHTWAKERWRGRKLVDIFEDEFRD 94
Query: 93 RPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVL 152
R +YY A++ G I V+ + V + VK+ ++H +HRHEPPV A + ++ ++ +++
Sbjct: 95 RTLEYYRHAMETGAIVVNGKAVGPDHVVKNGDLVNHTIHRHEPPVTAEPIRVIHEDDEMI 154
Query: 153 TVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADL 211
V KP VPVHP G+Y+ N+++ I++AE L +P HRLDRL SG+L + + A
Sbjct: 155 VVNKPSGVPVHPAGRYKYNSLIEIMKAERGEHFLPYPCHRLDRLTSGILFIGKTPQGAVK 214
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRST-------- 254
QI A V K Y+ARV G FP+GE V D + +N + G+S
Sbjct: 215 LTAQIRAHTVRKEYLARVAGKFPDGEVVCDQPILQISPRLGLNRVRANGKSARTVFKRLA 274
Query: 255 ----AESGDSLGDTPLKGKAACTKFTR--ISTNGTHSIVLCEPITGRTHQIRVHLQYTGY 308
DS P + + R I G +SIV C P+TGRTHQIRVHLQ+ G+
Sbjct: 275 YYPPETQNDSQPQQPKTPEQLAEEERRPWIKKEG-YSIVRCLPLTGRTHQIRVHLQFVGH 333
Query: 309 PIANDMLYLCEHV 321
PI ND LY + V
Sbjct: 334 PIQNDPLYANQRV 346
>gi|403218050|emb|CCK72542.1| hypothetical protein KNAG_0K01770 [Kazachstania naganishii CBS
8797]
Length = 607
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 119/315 (37%), Positives = 174/315 (55%), Gaps = 11/315 (3%)
Query: 3 RKREEEKSKANDSNSNGNGNGNGNG-NGNGNSSNNMEIVWQTPANPPVKEDYIFRDGRRN 61
++ +E K K N + NG N SN ++ Q +P D + +G R
Sbjct: 46 KQTQENKLKKRKVNVTTKELRDSNGFRLRWNESNKLK---QKQEDPDY--DAVIENGLRK 100
Query: 62 VKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVK 121
+KPYYF + + K RW + ++D+F EF+ R YY A++ G + +D + + VK
Sbjct: 101 IKPYYFTYKTFCKERWRDRKLLDVFVSEFRDRDKKYYQRAIEEGSVFLDGKPANLDSVVK 160
Query: 122 SSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH 181
+ I+H LHRHEP V A V ++ ++ D+L + KP +PVHP G+YR N+V +LQ +
Sbjct: 161 NGNLITHQLHRHEPSVTANPVKVVFQDDDILVIDKPSGIPVHPTGRYRFNSVTKMLQRDL 220
Query: 182 DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
+A + P +RLD+ SGL+ LA+ AD Q++A +V K Y+ARV G FP E V+
Sbjct: 221 GIA-VHPCNRLDKQTSGLMFLAKTPKGADEIGDQLKAREVTKEYVARVVGEFPREEITVE 279
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
+ R + + D K A T F RIS +G SIV C+P+TGR HQIRV
Sbjct: 280 KPL--KTLEPRVSLNVVCQIDDE--NAKHAKTVFQRISYDGKTSIVKCKPLTGRQHQIRV 335
Query: 302 HLQYTGYPIANDMLY 316
HLQY G+PIAND +Y
Sbjct: 336 HLQYLGHPIANDPIY 350
>gi|344231422|gb|EGV63304.1| pseudouridine synthase [Candida tenuis ATCC 10573]
Length = 580
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 160/271 (59%), Gaps = 10/271 (3%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
YI R V PY+F +++ K RW + ++D+F +EF+ + D+Y A+ G++ ++++
Sbjct: 73 YIIDGALRRVPPYFFTYLTFCKLRWRDRPLLDIFVDEFRDKDADFYKKAIASGQVTLNKK 132
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
+ V++ ISH HRHEP V + ++ I+ + +++ + KP +PVHP G+YR NT
Sbjct: 133 PADLDTIVRNGDLISHRAHRHEPCVSSKEIKIIFENENIIAIDKPSGIPVHPTGRYRFNT 192
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
+ I Q E+ + P +RLDRL SGL+ L + + AD F QQI+ V K YIARV G+
Sbjct: 193 ITKIFQHEYGKV-VHPCNRLDRLTSGLMFLGKTSKGADGFVQQIKDRSVRKEYIARVAGL 251
Query: 233 FPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN--GTHSIVLCE 290
FP E VD + A + T D +GK A T F R+S + SIV C
Sbjct: 252 FPVEEITVDKPL--RTIAPKLTLNRVDE-----KEGKEAKTVFRRLSYDKKSNTSIVKCL 304
Query: 291 PITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
P+TGRTHQIRVHLQ+ G+PIAND +Y E+V
Sbjct: 305 PLTGRTHQIRVHLQFLGHPIANDPIYSSEYV 335
>gi|146416095|ref|XP_001484017.1| hypothetical protein PGUG_03398 [Meyerozyma guilliermondii ATCC
6260]
Length = 611
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/263 (42%), Positives = 156/263 (59%), Gaps = 11/263 (4%)
Query: 57 DGR-RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
DGR R V PY+F ++++ K RW + ++D+F +EF+ R D+Y +A+ G + ++ +
Sbjct: 104 DGRLRRVLPYFFTYLTYCKLRWRDRKLIDIFCDEFRDRDQDFYKAAISEGLVTLNRKPAN 163
Query: 116 VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+ V++ ISH HRHEP V + + I+ ++ DV+ + KP +PVHP G+YR NT+
Sbjct: 164 IDSIVRNGDLISHRCHRHEPAVSSRPIKIVHEDDDVIAIDKPLGIPVHPVGRYRYNTITK 223
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
I Q E + P +RLDRL SGL+ L + AD F QQI+ V K YIARV G FP
Sbjct: 224 IFQHEFGRV-VHPCNRLDRLTSGLMFLGKTPKGADKFVQQIKDRTVRKEYIARVIGKFPC 282
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN--GTHSIVLCEPIT 293
E V+V I + + T D P GK A TKF RIS + SIV C P+T
Sbjct: 283 EEITVEVPI--KTVSPKHTLNMVD-----PKNGKEAKTKFKRISYDPASNTSIVKCYPLT 335
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GRTHQIRVHLQ+ G+ IAND +Y
Sbjct: 336 GRTHQIRVHLQHIGHAIANDPIY 358
>gi|171678031|ref|XP_001903966.1| hypothetical protein [Podospora anserina S mat+]
gi|170937084|emb|CAP61743.1| unnamed protein product [Podospora anserina S mat+]
Length = 479
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 166/297 (55%), Gaps = 32/297 (10%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F+DG R V PY++ + + K RW G+ I+++F EF+ RP +YY +A++ G++ V+ +
Sbjct: 55 YFFKDGLRRVAPYFYTYNTWCKERWRGRKIIEVFESEFRERPVEYYRAAMESGQVAVNGK 114
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
+V Y + + +SH HRHEPPV V ++ ++ D++ + KP VPVHP G+Y N+
Sbjct: 115 IVSPDYVMVNGDLVSHTTHRHEPPVTQDPVQVIHEDDDMIVINKPSGVPVHPAGRYHYNS 174
Query: 173 VVGILQAEHDLAPLF---PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARV 229
VV I++AE P F P +RLDRL SG++ +A+ A A+ QI V K Y+ARV
Sbjct: 175 VVEIMKAER--GPTFAPRPCNRLDRLTSGIMFIAKTAKAAESLSAQIFRRSVRKEYLARV 232
Query: 230 NGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLGDTP--------------- 265
G FP+GE V D + +N + G+S L P
Sbjct: 233 VGRFPDGEVVCDQPILQISPKLGLNRVRANGKSAKTVFKRLAYYPSPIIKPSSSNSPSPD 292
Query: 266 -LKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
+ +FTR T G +SIV C P+TGRTHQIRVHLQ+ G+P+ ND +Y + V
Sbjct: 293 EAETGGPEDQFTR-ETEG-YSIVRCLPVTGRTHQIRVHLQFLGHPVQNDPIYANQKV 347
>gi|398406823|ref|XP_003854877.1| hypothetical protein MYCGRDRAFT_107981 [Zymoseptoria tritici
IPO323]
gi|339474761|gb|EGP89853.1| hypothetical protein MYCGRDRAFT_107981 [Zymoseptoria tritici
IPO323]
Length = 469
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/284 (40%), Positives = 167/284 (58%), Gaps = 34/284 (11%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R V PY+F + ++ K RW G+ I+++F +EF+ RP +YY A++ G IQ++ + VP T
Sbjct: 69 RRVAPYHFTYNTNCKQRWRGRGILEIFKDEFRDRPPEYYEDAMERGAIQLNGQPVPSPET 128
Query: 120 -VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQ 178
V++ ISH LHRHEPPV A + I+ ++ ++ + KP VPVHP G+Y N+V+ IL+
Sbjct: 129 KVQNGDIISHTLHRHEPPVTAQPIGIVHEDDGLMIINKPAGVPVHPAGRYNYNSVIEILR 188
Query: 179 AE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEG 236
+E H+ PL P +RLDRL SG++ +A+N A+ Q+ A V K Y+ARV G FPEG
Sbjct: 189 SERGHEFNPL-PCNRLDRLTSGVMFIAKNKKAAERVTDQLMARTVRKEYVARVKGEFPEG 247
Query: 237 EQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRIS------------TN 281
+ V + + I+ R A GK A T F R++ N
Sbjct: 248 DVVCEQPILQISPKLGLNRVRA-----------NGKEARTVFKRLAYYPASAPNDTDNIN 296
Query: 282 GT----HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
G +SIV C P+TGRTHQ+RVHLQ+ G+PI+ND +Y + V
Sbjct: 297 GRQREGYSIVRCRPLTGRTHQLRVHLQFLGHPISNDPIYSNQRV 340
>gi|242817540|ref|XP_002486976.1| pseudouridine synthase [Talaromyces stipitatus ATCC 10500]
gi|218713441|gb|EED12865.1| DRAP deaminase (Rib2), putative [Talaromyces stipitatus ATCC 10500]
Length = 514
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 161/284 (56%), Gaps = 20/284 (7%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
+ F G R VKPY++ + ++ K RW G+T+ D+F EF+ R +YY A++ GR+ + +
Sbjct: 24 FYFEGGLRRVKPYFYTYNTYCKERWRGRTVYDIFTSEFRDRTAEYYKQAIEEGRVLISGK 83
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
+ + V + +SH HRHEPPV + + I+ ++ D++ + KP +PVH G+Y N+
Sbjct: 84 VANLDTIVPNGAIVSHSTHRHEPPVSSQPIGIIHEDDDMIVIDKPAGIPVHGAGRYHYNS 143
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
++ I++A+ + + P +RLDRL SG++ +++NA A+ F Q++ V K Y+ARV+G
Sbjct: 144 IIEIMKADRPGSKILPCNRLDRLTSGVMFISKNARAAEEFSAQLKERSVQKEYVARVSGR 203
Query: 233 FPEGEQVVD---------VNINYNASAGRST-----------AESGDSLGDTPLKGKAAC 272
FP+G + D + +N +AG+ S+ T G
Sbjct: 204 FPDGVVLCDQPIMAVSPKLGLNRVRAAGKEARTKFRRIAYYPVSPKKSVDATTASGDRPA 263
Query: 273 TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T + +SIV C P+TGRTHQIRVHLQ+ GYPI+ND +Y
Sbjct: 264 TPPATTTEEEGYSIVHCLPLTGRTHQIRVHLQFLGYPISNDPIY 307
>gi|6324506|ref|NP_014575.1| bifunctional DRAP deaminase/tRNA pseudouridine synthase RIB2
[Saccharomyces cerevisiae S288c]
gi|2501674|sp|Q12362.1|RIB2_YEAST RecName: Full=Bifunctional protein RIB2; Includes: RecName:
Full=tRNA pseudouridine(32) synthase, cytoplasmic;
AltName: Full=tRNA pseudouridine synthase 8; AltName:
Full=tRNA pseudouridylate synthase 8; AltName:
Full=tRNA-uridine isomerase 8; Includes: RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase
gi|642221|emb|CAA79742.1| DRAP deaminase [Saccharomyces cerevisiae]
gi|1419887|emb|CAA99076.1| RIB2 [Saccharomyces cerevisiae]
gi|285814824|tpg|DAA10717.1| TPA: bifunctional DRAP deaminase/tRNA pseudouridine synthase RIB2
[Saccharomyces cerevisiae S288c]
gi|392296765|gb|EIW07867.1| Rib2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 591
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 156/257 (60%), Gaps = 5/257 (1%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R ++PY+F + + K RW + +VD+F EF+ R YY + G++ +++E +
Sbjct: 79 RKIEPYFFTYKTFCKERWRDRKLVDVFVSEFRDREPSYYSKTIAEGKVYLNDEPANLDTI 138
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
++ I+H +HRHEPPV + + I+ ++ D+L + KP S+PVHP G+YR NT+ +L+
Sbjct: 139 IRDGDLITHKVHRHEPPVTSKPIDIVFEDEDILVIDKPSSIPVHPTGRYRFNTITKMLER 198
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ + + P +RLD+ SGL+ LA+ AD Q++A +V K Y+ARV G FP G +
Sbjct: 199 QLGYS-VHPCNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARVKGEFPIG--I 255
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
V+V+ + + + + D K A T F R+S +G SIV C+P+TGRTHQI
Sbjct: 256 VEVDKPVRSVNPKVALNAVCEMSDE--NAKHAKTVFQRVSYDGQTSIVKCKPLTGRTHQI 313
Query: 300 RVHLQYTGYPIANDMLY 316
RVHLQY G+PIAND +Y
Sbjct: 314 RVHLQYLGFPIANDPIY 330
>gi|121716811|ref|XP_001275916.1| pseudouridine synthase [Aspergillus clavatus NRRL 1]
gi|119404073|gb|EAW14490.1| DRAP deaminase (Rib2), putative [Aspergillus clavatus NRRL 1]
Length = 538
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 167/299 (55%), Gaps = 28/299 (9%)
Query: 43 TPANP-PVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSA 101
TP +P P+ Y F G R VKPY++ + ++ K RW G+ + D+F EF+ RP +YYV A
Sbjct: 27 TPCDPWPIP--YYFEGGLRRVKPYFYTYNTYCKERWRGRELQDIFVSEFRDRPAEYYVQA 84
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
+ GR+ V+ + + +K+ + ISH LHRHEPPV ++ ++ ++ D+L + KP VP
Sbjct: 85 LTDGRVTVNGKTAAPNTVIKNGEIISHTLHRHEPPVTGHEIGVIHEDNDILVIDKPAGVP 144
Query: 162 VHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
VH G+Y N++V IL+++ + P P +RLDRL SG++ +A++ AD+ ++++
Sbjct: 145 VHAAGRYHYNSIVEILRSQRGQEFVPR-PCNRLDRLTSGVMFIAKHPQGADMITRKLKQR 203
Query: 220 KVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLGDTPLKGKA 270
V K YIARV G FP+G V D + +N + G+ L P A
Sbjct: 204 TVQKEYIARVKGRFPDGVVVCDQPIMSVSPKLGLNRVRATGKDAKTKFRRLAYYPAASPA 263
Query: 271 ACTKFTRIS-------------TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T S + +SIV C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 264 PETDEVTASGERPATPPPLLANEDEGYSIVHCLPLTGRTHQIRVHLQFLGHPITNDPIY 322
>gi|151945568|gb|EDN63809.1| DRAP deaminase [Saccharomyces cerevisiae YJM789]
gi|256273956|gb|EEU08875.1| Rib2p [Saccharomyces cerevisiae JAY291]
gi|323303146|gb|EGA56948.1| Rib2p [Saccharomyces cerevisiae FostersB]
gi|323307078|gb|EGA60361.1| Rib2p [Saccharomyces cerevisiae FostersO]
Length = 591
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 156/257 (60%), Gaps = 5/257 (1%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R ++PY+F + + K RW + +VD+F EF+ R YY + G++ +++E +
Sbjct: 79 RKIEPYFFTYKTFCKERWRDRKLVDVFVSEFRDREPSYYSKTIAEGKVYLNDEPANLDTI 138
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
++ I+H +HRHEPPV + + I+ ++ D+L + KP S+PVHP G+YR NT+ +L+
Sbjct: 139 IRDGDLITHKVHRHEPPVTSKPIDIVFEDEDILVIDKPSSIPVHPTGRYRFNTITKMLER 198
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ + + P +RLD+ SGL+ LA+ AD Q++A +V K Y+ARV G FP G +
Sbjct: 199 QLGYS-VHPCNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARVKGEFPIG--I 255
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
V+V+ + + + + D K A T F R+S +G SIV C+P+TGRTHQI
Sbjct: 256 VEVDKPVRSVNPKVALNAVCEMSDE--NAKHAKTVFQRVSYDGQTSIVKCKPLTGRTHQI 313
Query: 300 RVHLQYTGYPIANDMLY 316
RVHLQY G+PIAND +Y
Sbjct: 314 RVHLQYLGFPIANDPIY 330
>gi|323331668|gb|EGA73082.1| Rib2p [Saccharomyces cerevisiae AWRI796]
gi|323335647|gb|EGA76930.1| Rib2p [Saccharomyces cerevisiae Vin13]
gi|323346638|gb|EGA80923.1| Rib2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352328|gb|EGA84863.1| Rib2p [Saccharomyces cerevisiae VL3]
gi|365763186|gb|EHN04716.1| Rib2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 591
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 156/257 (60%), Gaps = 5/257 (1%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R ++PY+F + + K RW + +VD+F EF+ R YY + G++ +++E +
Sbjct: 79 RKIEPYFFTYKTFCKERWRDRKLVDVFVSEFRDREPSYYSKTIAEGKVYLNDEPANLDTI 138
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
++ I+H +HRHEPPV + + I+ ++ D+L + KP S+PVHP G+YR NT+ +L+
Sbjct: 139 IRDGDLITHKVHRHEPPVTSKPIDIVFEDEDILVIDKPSSIPVHPTGRYRFNTITKMLER 198
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ + + P +RLD+ SGL+ LA+ AD Q++A +V K Y+ARV G FP G +
Sbjct: 199 QLGYS-VHPCNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARVKGEFPIG--I 255
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
V+V+ + + + + D K A T F R+S +G SIV C+P+TGRTHQI
Sbjct: 256 VEVDKPVRSVNPKVALNAVCEMSDE--NAKHAKTVFQRVSYDGQTSIVKCKPLTGRTHQI 313
Query: 300 RVHLQYTGYPIANDMLY 316
RVHLQY G+PIAND +Y
Sbjct: 314 RVHLQYLGFPIANDPIY 330
>gi|207341390|gb|EDZ69458.1| YOL066Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 589
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 156/257 (60%), Gaps = 5/257 (1%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R ++PY+F + + K RW + +VD+F EF+ R YY + G++ +++E +
Sbjct: 79 RKIEPYFFTYKTFCKERWRDRKLVDVFVSEFRDREPSYYSKTIAEGKVYLNDEPANLDTI 138
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
++ I+H +HRHEPPV + + I+ ++ D+L + KP S+PVHP G+YR NT+ +L+
Sbjct: 139 IRDGDLITHKVHRHEPPVTSKPIDIVFEDEDILVIDKPSSIPVHPTGRYRFNTITKMLER 198
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ + + P +RLD+ SGL+ LA+ AD Q++A +V K Y+ARV G FP G +
Sbjct: 199 QLGYS-VHPCNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARVKGEFPIG--I 255
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
V+V+ + + + + D K A T F R+S +G SIV C+P+TGRTHQI
Sbjct: 256 VEVDKPVRSVNPKVALNAVCEMSDE--NAKHAKTVFQRVSYDGQTSIVKCKPLTGRTHQI 313
Query: 300 RVHLQYTGYPIANDMLY 316
RVHLQY G+PIAND +Y
Sbjct: 314 RVHLQYLGFPIANDPIY 330
>gi|190407280|gb|EDV10547.1| DRAP deaminase [Saccharomyces cerevisiae RM11-1a]
Length = 591
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 156/257 (60%), Gaps = 5/257 (1%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R ++PY+F + + K RW + +VD+F EF+ R YY + G++ +++E +
Sbjct: 79 RKIEPYFFTYKTFCKERWRDRKLVDVFVSEFRDREPSYYSKTIAEGKVYLNDEPANLDTI 138
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
++ I+H +HRHEPPV + + I+ ++ D+L + KP S+PVHP G+YR NT+ +L+
Sbjct: 139 IRDGDLITHKVHRHEPPVTSKPIDIVFEDEDILVIDKPSSIPVHPTGRYRFNTITKMLER 198
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ + + P +RLD+ SGL+ LA+ AD Q++A +V K Y+ARV G FP G +
Sbjct: 199 QLGYS-VHPCNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARVKGEFPIG--I 255
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
V+V+ + + + + D K A T F R+S +G SIV C+P+TGRTHQI
Sbjct: 256 VEVDKPVRSVNPKVALNAVCEMSDE--NAKHAKTVFQRVSYDGQTSIVKCKPLTGRTHQI 313
Query: 300 RVHLQYTGYPIANDMLY 316
RVHLQY G+PIAND +Y
Sbjct: 314 RVHLQYLGFPIANDPIY 330
>gi|448081767|ref|XP_004194969.1| Piso0_005498 [Millerozyma farinosa CBS 7064]
gi|359376391|emb|CCE86973.1| Piso0_005498 [Millerozyma farinosa CBS 7064]
Length = 602
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 162/277 (58%), Gaps = 14/277 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y+ R V PY+F ++++ K RW + ++D+F +EF+ R +YY +A++ G + ++++
Sbjct: 99 YVIEGRLRRVTPYFFTYLTYCKLRWRDRKLLDIFTDEFRERDEEYYKNAIQEGLVAINKK 158
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
+ V++ ISH HRHEP V + + I+ ++ +++ + KP +PVHP G++R NT
Sbjct: 159 PANLDSIVRNGDLISHRTHRHEPSVSSNPIKIVFEDENIIAIDKPSGIPVHPTGRFRYNT 218
Query: 173 VVGILQAEHDLAPLF-PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
+ I + H+L + P +RLDRL SGL+ L + AD F QQI V K Y+ARV G
Sbjct: 219 ITNIFK--HELGQVVHPCNRLDRLTSGLMFLGKTPKGADSFAQQIRDRTVSKEYVARVKG 276
Query: 232 VFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK-GKAACTKFTRISTN--GTHSIVL 288
FP GE VD + T +L K GK A T F RI+ + S+V
Sbjct: 277 KFPLGEITVDEPL--------ITISPKHTLNVIDRKSGKEAKTAFRRITYDPETDTSVVK 328
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHRE 325
C P+TGRTHQIRVHLQ+ G+PIAND LY E+V +E
Sbjct: 329 CRPLTGRTHQIRVHLQFLGHPIANDPLYSSEYVWGKE 365
>gi|336262173|ref|XP_003345871.1| pseudouridine synthase [Sordaria macrospora k-hell]
gi|380088942|emb|CCC13054.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 476
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 169/307 (55%), Gaps = 27/307 (8%)
Query: 39 IVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYY 98
+V TP +P + YI DG R V PY++ + + K RW G+ ++++F EF+ RP +YY
Sbjct: 42 VVATTPCDPWPRPYYI-EDGLRRVVPYHYTYNTWCKERWRGRKLMEIFEVEFRDRPAEYY 100
Query: 99 VSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPP 158
+AV G + V+ + V Y +K+ ISH HRHEPP A + ++ ++ D++ + KP
Sbjct: 101 RTAVNTGLVVVNGKAVGPDYVLKNGDLISHTTHRHEPPTTAEPIGVIHEDDDLIVINKPS 160
Query: 159 SVPVHPCGQYRKNTVVGILQAEH--DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
VPVHP G+Y N+VV I++++ D P P +RLDRL SG++ LA+N A+ QI
Sbjct: 161 GVPVHPAGRYNYNSVVEIIKSQRGPDFLPR-PCNRLDRLTSGIMFLAKNQRAAERLVAQI 219
Query: 217 EAGKVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTA------------ 255
V K YIARV G FP+GE V D + +N + G+S
Sbjct: 220 SQRSVRKEYIARVVGRFPDGEVVCDQPILQISPKLTLNRVRANGKSARTVFKRLAYYPPP 279
Query: 256 -ESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDM 314
+G + P A T R G +SIV C P+TGRTHQIRVHLQ+ G+PI ND
Sbjct: 280 DAAGKDQTEQPATPDAEQTAQRRGEGEG-YSIVRCLPVTGRTHQIRVHLQFLGHPIQNDP 338
Query: 315 LYLCEHV 321
+Y + V
Sbjct: 339 IYANQKV 345
>gi|349581103|dbj|GAA26261.1| K7_Rib2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 591
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 156/257 (60%), Gaps = 5/257 (1%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R ++PY+F + + K RW + +VD+F EF+ R YY + G++ +++E +
Sbjct: 79 RKIEPYFFTYKTFCKERWRDRKLVDVFLSEFRDREPSYYSKTIAEGKVYLNDEPANLDTI 138
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
++ I+H +HRHEPPV + + I+ ++ D+L + KP S+PVHP G+YR NT+ +L+
Sbjct: 139 IRDGDLITHKVHRHEPPVTSKPIDIVFEDEDILVIDKPSSIPVHPTGRYRFNTITKMLER 198
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ + + P +RLD+ SGL+ LA+ AD Q++A +V K Y+ARV G FP G +
Sbjct: 199 QLGYS-VHPCNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARVKGEFPIG--I 255
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
V+V+ + + + + D K A T F R+S +G SIV C+P+TGRTHQI
Sbjct: 256 VEVDKPVRSVNPKVALNAVCEMSDE--NAKHAKTVFQRVSYDGQTSIVKCKPLTGRTHQI 313
Query: 300 RVHLQYTGYPIANDMLY 316
RVHLQY G+PIAND +Y
Sbjct: 314 RVHLQYLGFPIANDPIY 330
>gi|50291713|ref|XP_448289.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527601|emb|CAG61250.1| unnamed protein product [Candida glabrata]
Length = 457
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 179/320 (55%), Gaps = 14/320 (4%)
Query: 3 RKREEEKSKANDSNSNGNGNGNGNGNGNG---NSSNNMEIVWQTPANPPVKEDYIFRDG- 58
++ +EEK K + N N +G G +S+ + ++PP I DG
Sbjct: 52 KRVQEEKIKRRERNKKSNAKSEIIRDGAGFKLRASSTNKKTKNRQSDPPYT---IEVDGP 108
Query: 59 RRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSY 118
R + PYYF + ++ K RW + ++D+F EF+ RP +YY ++ G + ++++ +
Sbjct: 109 LRKIVPYYFTYNTYCKLRWRDRNLLDVFTNEFRDRPAEYYKKTIERGAVLLNDKPATLES 168
Query: 119 TVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQ 178
+K+ I+H +HRHEPPV + + I+ ++ D+L + KP +PVHP G+YR NT+ L+
Sbjct: 169 IIKNGDLITHKVHRHEPPVTSRPIEIVFEDNDILVINKPSGIPVHPTGRYRFNTITKALE 228
Query: 179 AEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQ 238
E + P +RLDR+ SGL+ LA+ + AD Q++A +V K Y+A+V G FPEG
Sbjct: 229 KERGYV-VHPCNRLDRMTSGLMFLAKTSKGADKIGDQLKAREVEKEYLAKVVGEFPEGTT 287
Query: 239 VVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRIST--NGTHSIVLCEPITGRT 296
VVD + ++ D K A T F R+S + SIV C+P+TGR+
Sbjct: 288 VVDKPLKLLEPRLTLNVVCEETDPD----AKHARTIFERVSVSKDKQTSIVKCKPLTGRS 343
Query: 297 HQIRVHLQYTGYPIANDMLY 316
HQIRVHLQ+ G+PIAND +Y
Sbjct: 344 HQIRVHLQHLGHPIANDPIY 363
>gi|156846788|ref|XP_001646280.1| hypothetical protein Kpol_1032p14 [Vanderwaltozyma polyspora DSM
70294]
gi|156116955|gb|EDO18422.1| hypothetical protein Kpol_1032p14 [Vanderwaltozyma polyspora DSM
70294]
Length = 612
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/262 (39%), Positives = 157/262 (59%), Gaps = 5/262 (1%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R ++PYYF + + K RW + ++D+F EF+ R YY + G + ++++ +
Sbjct: 108 RRIEPYYFTYKTFCKLRWRDRKLLDVFVTEFRDREESYYKKTIAGGLVFLNDKPANLESI 167
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ I+H +HRHEPPV + + + ++ ++L + KP +PVHP G++R NT+ IL+
Sbjct: 168 IRNGDLITHNVHRHEPPVTSRPIKTVFEDDNILVIDKPSGIPVHPTGRFRFNTITKILEK 227
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ + + P +RLD+L SGL+ LA+ AD Q++A +V K Y+ARV G FP GE
Sbjct: 228 KLGYS-VHPCNRLDKLTSGLMFLAKTPKGADEMADQLKAREVTKEYVARVVGEFPVGEVT 286
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
V+ + R + S SL D K A T F R+S +G SIV C+P+TGRTHQI
Sbjct: 287 VEKPV--KTVDPRVSLNSVCSLEDE--NAKHAKTIFNRVSYDGKTSIVKCKPLTGRTHQI 342
Query: 300 RVHLQYTGYPIANDMLYLCEHV 321
RVHLQY G+PIAND +Y HV
Sbjct: 343 RVHLQYIGFPIANDPIYSNPHV 364
>gi|448531543|ref|XP_003870271.1| Rib2 protein [Candida orthopsilosis Co 90-125]
gi|380354625|emb|CCG24141.1| Rib2 protein [Candida orthopsilosis]
Length = 585
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 174/311 (55%), Gaps = 14/311 (4%)
Query: 29 GNGNSSNNMEIVWQTPANPPVKEDYIFRDGR-RNVKPYYFEFISHVKNRWAGKTIVDLFA 87
G N+++N + +T A + DG+ R V PYYF ++++ K RW +T++D+F
Sbjct: 54 GGANNTDNTLVEGKTIAEEEAEGAKYVIDGKLRRVTPYYFTYLTYCKLRWRDRTLLDIFT 113
Query: 88 EEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQK 147
+EF+ R + Y A++ G + ++ + + V++ ISH R EPPV A V I+ +
Sbjct: 114 DEFRDRTPEAYKKAIEGGMVSINSKTANLETVVRNGDLISHRGFRREPPVNAAPVKIVYE 173
Query: 148 EPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLA-PLFPVHRLDRLVSGLLILARNA 206
++L + KP +PVHP G++R NT+ ILQ HD+ + P +RLDRL SGL+ L + A
Sbjct: 174 NDELLVIDKPSGIPVHPTGRFRYNTITKILQ--HDMGKTVHPCNRLDRLTSGLMFLGKTA 231
Query: 207 SKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL 266
++ F +QI V K YIARV G F +D + Y S + +
Sbjct: 232 QGSNDFMKQIRDRNVSKEYIARVKGEFSTHNLTIDKPL-YTLSPKHTLNVVDEE------ 284
Query: 267 KGKAACTKFTRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHR 324
KGK A T+F R+S + T S+V C P+TGRTHQIRVHLQY G+PIAND +Y +V
Sbjct: 285 KGKEAVTEFKRVSYDPTTDTSVVKCHPLTGRTHQIRVHLQYIGHPIANDPIYSNTYVWGD 344
Query: 325 EGMSADRAAAY 335
E + D A Y
Sbjct: 345 E-LGKDGKANY 354
>gi|410080736|ref|XP_003957948.1| hypothetical protein KAFR_0F02160 [Kazachstania africana CBS 2517]
gi|372464535|emb|CCF58813.1| hypothetical protein KAFR_0F02160 [Kazachstania africana CBS 2517]
Length = 614
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 154/258 (59%), Gaps = 7/258 (2%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R ++PYYF + + K RW + ++D+F EF+ YY ++ G + +D++ +
Sbjct: 104 RKIEPYYFTYKTFCKLRWRDRKLLDIFVSEFREHDEAYYKKCIENGSVLIDDKPANIDTI 163
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
V++ ISH HRHEPPV+A + I+ ++ D+L + KP +PVHP G+YR N+V +L+
Sbjct: 164 VRNGSLISHKAHRHEPPVIAKPIKIVYQDDDLLVIDKPSGIPVHPTGRYRFNSVTKMLEK 223
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ A + P +RLD+L SGL+ LA+ AD Q++ +V K YIARV G FP E
Sbjct: 224 QLGFA-VHPCNRLDKLTSGLMFLAKTPKGADEMGDQLKVREVRKEYIARVVGEFPVEEIS 282
Query: 240 VDVNI-NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
VD+ + ++ + S + G + A T F RIS +G S+V C+P+TGR HQ
Sbjct: 283 VDMPLRTFDPKVALNVVCSMEDEG-----ARHAKTIFKRISFDGRTSVVRCKPLTGRQHQ 337
Query: 299 IRVHLQYTGYPIANDMLY 316
IRVHLQY G+PIAND +Y
Sbjct: 338 IRVHLQYLGFPIANDPIY 355
>gi|212530788|ref|XP_002145551.1| pseudouridine synthase [Talaromyces marneffei ATCC 18224]
gi|210074949|gb|EEA29036.1| DRAP deaminase (Rib2), putative [Talaromyces marneffei ATCC 18224]
Length = 511
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 161/290 (55%), Gaps = 32/290 (11%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R VKPY+ + ++ K RW G+T+ D+F EF+ R +YY A++ GR+ V +
Sbjct: 24 YYFEGGLRRVKPYHHTYNTYCKERWRGRTLYDIFTSEFRDRTPEYYKKAIEDGRVLVGGK 83
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
+ + V + +SH HRHEPPV + + I+ ++ D++ + KP +PVH G+Y NT
Sbjct: 84 VANLETIVPNGAIVSHSTHRHEPPVSSRPIGIIHEDDDMIVIDKPAGIPVHGAGRYHFNT 143
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
++ I++A+ P +RLDRL SG++ +A+N A+ F Q+++ + K Y+ARV+G
Sbjct: 144 ILEIMKADRPGFKPLPCNRLDRLTSGVMFIAKNPKAAEKFALQLKSRTLQKEYVARVSGR 203
Query: 233 FPEGEQVVDV--------------------------NINYNASAGRSTAESGDSLGDTPL 266
FP+G + D I Y + ++ AES + GD P
Sbjct: 204 FPDGVVLCDQPIMSVSPKLGLNRVRATGKEARTKFRRIAYYPAPPKTDAESATTSGDRPA 263
Query: 267 KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+ + +SIV C P+TGRTHQIRVHLQ+ GYPI+ND +Y
Sbjct: 264 TPPATATE------DEGYSIVHCLPLTGRTHQIRVHLQFLGYPISNDPIY 307
>gi|327299994|ref|XP_003234690.1| pseudouridine synthase [Trichophyton rubrum CBS 118892]
gi|326463584|gb|EGD89037.1| DRAP deaminase [Trichophyton rubrum CBS 118892]
Length = 517
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 171/300 (57%), Gaps = 27/300 (9%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P + YI + G R V PYY+ + ++ K RW GK ++D+++ EF+ RP YY +A+
Sbjct: 25 TPCDPWPRPYYIEK-GLRRVAPYYYTYNTYCKERWRGKNLLDIYSTEFRDRPNGYYKAAI 83
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
GRI +D ++ + + Q ISH LHRHEPPV + + I+ ++ D++ + KP +PV
Sbjct: 84 DGGRITIDGKVATADSIINNGQVISHTLHRHEPPVTSRPIKIIHEDEDIIVIDKPAGIPV 143
Query: 163 HPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
HP G+Y N+++ I+++E L + +P +RLDRL SG++ L ++ A+ + + + +
Sbjct: 144 HPAGRYNYNSIIEIMRSERGLGWIPYPCNRLDRLTSGIMFLGKHPKAAEQMAKSLRSRTL 203
Query: 222 IKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLGDTP------L 266
K YIARV G FP+G + D + +N + G+ + P
Sbjct: 204 RKEYIARVKGYFPDGVVLCDQPMLKVSPILGLNRVRATGKDAQTKFRRIAYYPPVEKEDK 263
Query: 267 KGKAACTKF--TRIST--------NGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
G+A ++ +R ST + +SIV C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 264 NGEATSSQGPDSRASTPPPLPADVDEGYSIVHCLPLTGRTHQIRVHLQFLGHPITNDPIY 323
>gi|401839840|gb|EJT42863.1| PUS9-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 458
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 156/259 (60%), Gaps = 9/259 (3%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +KPY+F + + K RW + ++D+F EF+ R +YY + G + ++E+ +S
Sbjct: 102 RKIKPYHFTYRTFCKERWRNRKLIDVFTSEFRDREPEYYRKTIANGSVCLNEKTADLSTI 161
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+ + I+H +HRHEPPV + + I+ + +++ + KP +PVHP G+YR NTV +L+
Sbjct: 162 IHNGDLITHQVHRHEPPVTSRPIKIVFENNNIMVIDKPSGIPVHPTGRYRFNTVTKMLEN 221
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ +A + P +RLDRL SGL+ LA+ AD Q++A ++ K Y+A+V G FPE E V
Sbjct: 222 KLGIA-VNPCNRLDRLTSGLMFLAKTREGADEIGDQLKAREINKEYVAKVIGEFPETEVV 280
Query: 240 VD--VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTH 297
V+ + + A + D K A T F RIS +G SIV C+P+TGR+H
Sbjct: 281 VEKPLKLKEPRLALNVVCQMEDE------GAKHAKTVFNRISYDGKTSIVKCKPLTGRSH 334
Query: 298 QIRVHLQYTGYPIANDMLY 316
QIRVHLQY G+PIAND +Y
Sbjct: 335 QIRVHLQYLGHPIANDPIY 353
>gi|169614099|ref|XP_001800466.1| hypothetical protein SNOG_10184 [Phaeosphaeria nodorum SN15]
gi|160707276|gb|EAT82519.2| hypothetical protein SNOG_10184 [Phaeosphaeria nodorum SN15]
Length = 474
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 170/303 (56%), Gaps = 23/303 (7%)
Query: 40 VWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYV 99
V TP +P Y DG R VKPY++ + ++ K RW G+ I+D+F+ EF+ RP +YY
Sbjct: 28 VVTTPCDP-WPPPYYLEDGLRKVKPYHYTYNTYCKQRWRGREILDIFSSEFRDRPAEYYE 86
Query: 100 SAVKCGRIQVDEEMVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPP 158
A+ GR+ V+ + VP T+K+ ISH LHRHEPP A + I+ ++ +++ + KP
Sbjct: 87 KAIVEGRVVVNGQPVPSTKTTIKNGDIISHTLHRHEPPCTATPIGIVHEDDNLIVINKPA 146
Query: 159 SVPVHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
+PVHP G+Y N+++ IL+A+ + PL P +RLDRL SG++ + ++ A+ QI
Sbjct: 147 GMPVHPAGRYNFNSIIEILRADRGYGWNPL-PCNRLDRLTSGIMFIGKHRQAAEDMSAQI 205
Query: 217 EAGKVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLGDTPLK 267
V K YI RV G FPEGE V + + +N + G+ L P K
Sbjct: 206 RTRTVKKEYITRVAGEFPEGEVVCEKPILQISPKLGLNRVRANGKEALTVFKRLAYYPPK 265
Query: 268 --GKAACTKFTRISTNGT-------HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLC 318
GK + +G +SIV C P+TGRTHQ+RVHLQ+ G+PI+ND +Y
Sbjct: 266 DDGKPGEEQDVEEGPDGQPWKKLRGYSIVRCFPVTGRTHQLRVHLQFLGHPISNDPIYAN 325
Query: 319 EHV 321
+ V
Sbjct: 326 QRV 328
>gi|85075514|ref|XP_955780.1| pseudouridine synthase [Neurospora crassa OR74A]
gi|28916789|gb|EAA26544.1| hypothetical protein NCU03846 [Neurospora crassa OR74A]
Length = 473
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 168/303 (55%), Gaps = 27/303 (8%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP++P Y DG R V PY++ + + K RW G+ ++++F EF+ RP +YY +AV
Sbjct: 46 TPSDP-WPRPYFVEDGLRRVVPYHYTYNTWCKERWRGRKLMEIFEVEFRDRPAEYYRNAV 104
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + V+ + V + +K+ ISH HRHEPPV A + ++ ++ D++ + KP VPV
Sbjct: 105 ETGLVVVNGKAVGPEHVLKNGDLISHTTHRHEPPVTAEPIRVIHEDNDLIVINKPSGVPV 164
Query: 163 HPCGQYRKNTVVGILQAEHDLAPLF---PVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
HP G+Y N+VV I+++E P F P +RLDRL SG++ LA++ A+ QI
Sbjct: 165 HPAGRYNYNSVVEIIKSER--GPGFLPRPCNRLDRLTSGIMFLAKSQHAAERLVAQISQR 222
Query: 220 KVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLG-----DTP 265
V K YIARV G FP+GE V D + +N + G++ L D P
Sbjct: 223 SVRKEYIARVVGRFPDGEVVCDQPILQISPKLTLNRVRANGKAARTVFKRLAYYPPVDPP 282
Query: 266 LKGKA-------ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLC 318
KG+ A R +SIV C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 283 TKGQTEQPAMPDAEQAAQRRGEGEGYSIVRCLPVTGRTHQIRVHLQFLGHPIQNDPIYAN 342
Query: 319 EHV 321
+ V
Sbjct: 343 QKV 345
>gi|345564524|gb|EGX47486.1| hypothetical protein AOL_s00083g422 [Arthrobotrys oligospora ATCC
24927]
Length = 497
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 161/282 (57%), Gaps = 22/282 (7%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TPANP + Y F G R VKPY++ + + K RW KTI +++ EF+ RP +YY +AV
Sbjct: 23 TPANPSIPPWY-FEGGMRRVKPYHYTYNTFCKERWRNKTIFEIYGTEFRDRPQEYYKNAV 81
Query: 103 KCGRIQVDEEMVP---VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPS 159
G I ++ VP + +++ ++H LHRHEPPV V+I+ + D++ + KP
Sbjct: 82 LTGMISING--VPTHSLDQIIRNGDIVTHTLHRHEPPVTDKPVTIVCETDDMIVINKPAG 139
Query: 160 VPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
+PVHP G+Y N+VV I++ E P +RLDRL SGL+ +A+ + Q++
Sbjct: 140 MPVHPAGRYHYNSVVEIMRFERGGWNPMPCNRLDRLTSGLMFIAKTKEASKSMMLQLQTR 199
Query: 220 KVIKRYIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFT 276
+ K Y+A V G FPEG+ VV+ + I+ R A GK A T F
Sbjct: 200 TIKKEYVAMVKGEFPEGDVVVEQPILAISPKLGLNRVKA-----------NGKHAKTLFR 248
Query: 277 RISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
R S N T +S+V C P TGRTHQIRVHLQ+ G+PIAND +Y
Sbjct: 249 RRSYNPTKGYSVVQCLPFTGRTHQIRVHLQFLGHPIANDPIY 290
>gi|310792938|gb|EFQ28399.1| RluA family pseudouridine synthase [Glomerella graminicola M1.001]
Length = 476
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 164/306 (53%), Gaps = 25/306 (8%)
Query: 40 VWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYV 99
V TP Y F DG R V PY+F + + K RW G+ ++++F +EF+ R +YY
Sbjct: 41 VLTTPTGDMWPRPYYFEDGLRRVAPYHFTYHTWAKERWRGRKLIEIFEDEFRDRTLEYYR 100
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPS 159
A++ G I V+ + V + VK+ ++H +HRHEPPV + I+ ++ +++ V KP
Sbjct: 101 HAMETGAIVVNGKAVGPDHVVKNGDLVNHTIHRHEPPVTGEPIRIIHEDDEMIVVDKPSG 160
Query: 160 VPVHPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEA 218
VPVHP G+Y+ N+++ I++AE L +P HRLDRL SG+L + + A QI A
Sbjct: 161 VPVHPAGRYKYNSLIEIMKAERGEHFLPYPCHRLDRLTSGILFIGKTPQAAVKLTAQIRA 220
Query: 219 GKVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLGDTPLKGK 269
V K Y+ARV G FP+GE V D + +N + G+S L P +
Sbjct: 221 HTVRKEYLARVAGKFPDGEVVCDQPILQISPRLGLNRVRANGKSARTVFKRLAYYPPDKQ 280
Query: 270 AAC--------------TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
A + I G +SIV C P+TGRTHQIRVHLQ+ G+PI ND L
Sbjct: 281 DALPMEQPKTPEQLAEEKRRPWIKKEG-YSIVRCLPLTGRTHQIRVHLQFLGHPIQNDPL 339
Query: 316 YLCEHV 321
Y + V
Sbjct: 340 YANQRV 345
>gi|336466476|gb|EGO54641.1| hypothetical protein NEUTE1DRAFT_113113 [Neurospora tetrasperma
FGSC 2508]
Length = 502
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 27/303 (8%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP++P + Y+ DG R V PY++ + + K RW G+ ++++F EF+ RP +YY +AV
Sbjct: 75 TPSDPWPRPYYV-EDGLRRVVPYHYTYNTWCKERWRGRKLMEIFEVEFRDRPAEYYRNAV 133
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + V+ + V + +K+ ISH HRHEPPV A + ++ ++ D++ + KP VPV
Sbjct: 134 ETGLVVVNGKAVGPEHVLKNGDLISHTTHRHEPPVTAEPIRVIHEDNDLIVINKPSGVPV 193
Query: 163 HPCGQYRKNTVVGILQAEHDLAPLF---PVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
HP G+Y N+VV I+++E P F P +RLDRL SG++ LA++ A+ QI
Sbjct: 194 HPAGRYNYNSVVEIIKSER--GPGFLPRPCNRLDRLTSGIMFLAKSQHAAERLVAQISQR 251
Query: 220 KVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLG-----DTP 265
V K YIARV G FP+GE V D + +N + G++ L D P
Sbjct: 252 SVRKEYIARVVGRFPDGEVVCDQPILQISPKLTLNRVRANGKAARTVFKRLAYYPPVDPP 311
Query: 266 LKGKA-------ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLC 318
KG+ A R +SIV C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 312 TKGQTEQPAMPDAEQAAQRRGEGEGYSIVRCLPVTGRTHQIRVHLQFLGHPIQNDPIYAN 371
Query: 319 EHV 321
+ V
Sbjct: 372 QKV 374
>gi|452845577|gb|EME47510.1| hypothetical protein DOTSEDRAFT_146227, partial [Dothistroma
septosporum NZE10]
Length = 458
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 167/292 (57%), Gaps = 26/292 (8%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P Y+ R V PY+F + + K RW G+ I+++F +EF+ RP +YY A+
Sbjct: 53 TPCDP-WPRPYVLDGNLRRVAPYHFTYNTFCKERWRGREILEIFQDEFRDRPVEYYQGAI 111
Query: 103 KCGRIQVDEEMVPVSYT-VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
+ G I ++ + VP + T VK+ ISH LHRHEPPV A + ++ ++ DV+ + KP VP
Sbjct: 112 ESGAIHLNGKPVPSTSTKVKNGDIISHTLHRHEPPVTAQPIGVVHEDEDVIIINKPAGVP 171
Query: 162 VHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
VHP G+Y N+V+ I++AE H PL P +RLDRL SG++ + ++ A+ +Q+
Sbjct: 172 VHPAGRYNYNSVIEIMRAERGHQFNPL-PCNRLDRLTSGVMFIGKHKKAAERITEQLMGR 230
Query: 220 KVIKRYIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFT 276
+ K Y+ARV G FP + V + + I+ R A GK A T F
Sbjct: 231 TMRKEYVARVIGEFPSDDVVCEEPILQISPKLGLNRVRA-----------NGKEARTVFK 279
Query: 277 RISTNGT-------HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
R++ +SIV C P+TGRTHQ+RVHLQ+ G+PI+ND +Y + V
Sbjct: 280 RLAYYSPRDGHGIGYSIVRCRPLTGRTHQLRVHLQFLGHPISNDPIYSNQRV 331
>gi|350286654|gb|EGZ67901.1| pseudouridine synthase [Neurospora tetrasperma FGSC 2509]
Length = 501
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 27/303 (8%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP++P + Y+ DG R V PY++ + + K RW G+ ++++F EF+ RP +YY +AV
Sbjct: 74 TPSDPWPRPYYV-EDGLRRVVPYHYTYNTWCKERWRGRKLMEIFEVEFRDRPAEYYRNAV 132
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + V+ + V + +K+ ISH HRHEPPV A + ++ ++ D++ + KP VPV
Sbjct: 133 ETGLVVVNGKAVGPEHVLKNGDLISHTTHRHEPPVTAEPIRVIHEDNDLIVINKPSGVPV 192
Query: 163 HPCGQYRKNTVVGILQAEHDLAPLF---PVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
HP G+Y N+VV I+++E P F P +RLDRL SG++ LA++ A+ QI
Sbjct: 193 HPAGRYNYNSVVEIIKSER--GPGFLPRPCNRLDRLTSGIMFLAKSQHAAERLVAQISQR 250
Query: 220 KVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLG-----DTP 265
V K YIARV G FP+GE V D + +N + G++ L D P
Sbjct: 251 SVRKEYIARVVGRFPDGEVVCDQPILQISPKLTLNRVRANGKAARTVFKRLAYYPPVDPP 310
Query: 266 LKGKA-------ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLC 318
KG+ A R +SIV C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 311 TKGQTEQPAMPDAEQAAQRRGEGEGYSIVRCLPVTGRTHQIRVHLQFLGHPIQNDPIYAN 370
Query: 319 EHV 321
+ V
Sbjct: 371 QKV 373
>gi|390352078|ref|XP_781802.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Strongylocentrotus purpuratus]
Length = 602
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 148/268 (55%), Gaps = 14/268 (5%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
+Y F +G R +KPY ++F + K RW G ++D+F +EF+ +YY +A+ G I+V++
Sbjct: 28 EYYFENGLRKIKPYVYKFECYAKGRWFGSKLLDVFKKEFRLESAEYYETAIHEGLIRVNK 87
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
+K++ + +HRHEPPV + I+ D L + KP S+PVHPCG+YR N
Sbjct: 88 GKASPDLILKNNDFMQSKVHRHEPPVSGEPIQIIADTQDYLVINKPSSIPVHPCGKYRHN 147
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
T+V IL ++ L +HRLDRL SGLL+ AR + + K+ K Y+ + +G
Sbjct: 148 TIVFILGKDYGFKGLHTIHRLDRLTSGLLLFARTLQVSHRLDAYVRERKLEKTYVCKAHG 207
Query: 232 VFPEGEQVVDVNI---NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP V + I ++ R + GK T+F R+S +G SI+
Sbjct: 208 EFPSTPVVCEEPIFIVSHKIGVCRVKED-----------GKPCKTRFERLSYDGETSIIK 256
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P TGR HQIRVHLQY G+PI ND LY
Sbjct: 257 CHPHTGRMHQIRVHLQYLGFPIINDPLY 284
>gi|366996919|ref|XP_003678222.1| hypothetical protein NCAS_0I02120 [Naumovozyma castellii CBS 4309]
gi|342304093|emb|CCC71880.1| hypothetical protein NCAS_0I02120 [Naumovozyma castellii CBS 4309]
Length = 612
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 151/261 (57%), Gaps = 13/261 (4%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +KPYYF + + K RW + ++D+F EF+ R YY + G + +++ +
Sbjct: 104 RKIKPYYFTYKTFCKERWRDRKLLDVFVSEFRDRDEQYYRKTIAKGDVFLNDTPANLESI 163
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ I+H LHRHEP V + V + + D+L + KP VPVHP G+YR N+V IL
Sbjct: 164 IRNGDLITHKLHRHEPAVTSEPVKTVFENEDILVIDKPSGVPVHPTGRYRFNSVTKIL-- 221
Query: 180 EHDLA-PLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQ 238
E DL + PV+RLDRL SGL+ +A+ AD Q++A +V K YIARV G FP E
Sbjct: 222 ERDLKYTVHPVNRLDRLTSGLMFMAKTPKGADELGDQLKAREVSKEYIARVVGEFPIEEI 281
Query: 239 VVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGR 295
VVD ++ + R+ + + A T F RIS +G SIV C+P+TGR
Sbjct: 282 VVDKPLKTVDPKVALNRTCTMEDEG-------ARHAKTVFNRISYDGKTSIVKCKPLTGR 334
Query: 296 THQIRVHLQYTGYPIANDMLY 316
HQIRVHLQY G+PIAND +Y
Sbjct: 335 QHQIRVHLQYLGHPIANDPIY 355
>gi|119482145|ref|XP_001261101.1| pseudouridine synthase [Neosartorya fischeri NRRL 181]
gi|119409255|gb|EAW19204.1| DRAP deaminase (Rib2), putative [Neosartorya fischeri NRRL 181]
Length = 525
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 166/301 (55%), Gaps = 30/301 (9%)
Query: 43 TPANP-PVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSA 101
TP +P P+ Y F G R VKPYY+ + ++ K RW G+ + ++F EF+ RP +YYV A
Sbjct: 27 TPCDPWPIP--YYFEGGLRRVKPYYYTYNTYCKERWRGRQLQEIFTSEFRDRPAEYYVQA 84
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
+ G++ V+ + +K+ + ISH LHRHEPPV ++ I+ ++ D+L + KP VP
Sbjct: 85 LADGKVTVNGKTAAPDTVIKNGEIISHTLHRHEPPVTGHEIGIIHEDNDILVIDKPAGVP 144
Query: 162 VHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
VH G+Y N++V IL+++ + P P +RLDRL SG++ +A++ AD +++
Sbjct: 145 VHAAGRYHYNSIVEILRSQRGQEFVPR-PCNRLDRLTSGVMFIAKHPKAADAITIKLKQR 203
Query: 220 KVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLGDTPLKGKA 270
V K YIARV G FP+G V D + +N + G+ L P A
Sbjct: 204 TVQKEYIARVKGRFPDGVVVCDQPIMSVSPKLGLNRVRATGKDAKTKFRRLAYYPPASPA 263
Query: 271 ACTKFTRISTNGT---------------HSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
+ ++ +G +SIV C P+TGRTHQIRVHLQ+ G+PI ND +
Sbjct: 264 PERDESEVTASGDRPATPPPLLANESEGYSIVHCLPLTGRTHQIRVHLQFLGHPITNDPI 323
Query: 316 Y 316
Y
Sbjct: 324 Y 324
>gi|134082733|emb|CAK42625.1| unnamed protein product [Aspergillus niger]
Length = 484
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 159/275 (57%), Gaps = 16/275 (5%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P Y F G R VKPY++ + + K RW G+ +VD+F EF+ RP +YY A+
Sbjct: 27 TPCDP-WPAPYYFEGGLRRVKPYHYTYNTFCKERWRGRELVDIFLSEFRDRPAEYYRKAL 85
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + V+ + VK+ Q ISH LHRHEPPV ++ I+ ++ D++ + KP VPV
Sbjct: 86 QDGLVAVNGTPAGPNTVVKNGQIISHTLHRHEPPVTGKEIGIIHEDDDLIVIDKPAGVPV 145
Query: 163 HPCGQYRKNTVVGILQAE-HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
H G+Y N+V+ I++++ H P +RLDRL SG++ L + A A+ +++A +
Sbjct: 146 HSAGRYHYNSVLEIMRSQRHPEWVPRPCNRLDRLTSGVMFLGKTAKAAENMTGKLKARTL 205
Query: 222 IKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN 281
K Y+ARV G FP+G V D I + L GK A TKF R+
Sbjct: 206 QKEYVARVKGKFPDGVIVCDQPI--------MSVSPKVGLNRVRATGKEAKTKFRRL--- 254
Query: 282 GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+IV C P+TGRTHQIRVHLQ+ G+PI+ND +Y
Sbjct: 255 ---AIVHCLPLTGRTHQIRVHLQFLGHPISNDPIY 286
>gi|339246467|ref|XP_003374867.1| pseudouridylate synthase 6 [Trichinella spiralis]
gi|316971885|gb|EFV55608.1| pseudouridylate synthase 6 [Trichinella spiralis]
Length = 404
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/264 (39%), Positives = 147/264 (55%), Gaps = 8/264 (3%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V+PY+F + K RW G+ +VD+ E +++ A+ GR+ V+ +
Sbjct: 42 YFTENGLRKVRPYWFHYYVFAKKRWFGRRLVDVLQNELYNPIGNFFEEAILAGRVTVNGQ 101
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
V Y V++ I H HRHE PV+ V I+ D+L V KP S+PVHPCG+Y N+
Sbjct: 102 PTSVDYVVENGDLIRHMCHRHELPVLDSAVDIVTDTEDILVVNKPCSIPVHPCGRYHFNS 161
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
+V L+ + L HRLDRL SGL+I +N RQQ+ ++ K Y+ V+G
Sbjct: 162 LVLYLKHIGGMDNLKTFHRLDRLTSGLVIFLKNEKIEKKLRQQMIENQIKKEYLCLVDGE 221
Query: 233 FPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPI 292
FPE E V D ++ + + + D GK + TKF ++ ++G SI+ C P
Sbjct: 222 FPEEEVVCDKPLDVLSQSMGIMYITAD--------GKPSLTKFYKLFSDGKTSILKCCPE 273
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGRTHQIRVHLQY GYPI ND +Y
Sbjct: 274 TGRTHQIRVHLQYLGYPIVNDYIY 297
>gi|367013526|ref|XP_003681263.1| hypothetical protein TDEL_0D04680 [Torulaspora delbrueckii]
gi|359748923|emb|CCE92052.1| hypothetical protein TDEL_0D04680 [Torulaspora delbrueckii]
Length = 618
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 152/262 (58%), Gaps = 15/262 (5%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R + PYY+ +++ K RW + ++++F EF+ R YY + G + ++ E +
Sbjct: 111 RKLAPYYYTYMTFCKLRWRDRNLLEVFESEFRDREKSYYKKTIASGSVLLNGEPANLDSI 170
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ I+H +HRHEPPV + + + ++ D+L + KP +PVHP G+YR NT+ IL+
Sbjct: 171 IRNGDLITHKIHRHEPPVTSKPIGTVYEDDDILVIDKPSGIPVHPTGRYRFNTITKILEK 230
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ A + P++RLDRL SGL+ +A+ AD Q++A +V K Y+ARV G FP GE
Sbjct: 231 QWGKA-VHPINRLDRLTSGLMFIAKTPKGADEMSDQMKAREVSKEYVARVVGEFPVGELC 289
Query: 240 VD-----VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITG 294
V+ V +A E G K A T F R+S +G SIV C P+TG
Sbjct: 290 VEEPLRSVEPRLGLNAVCRMEEEG---------AKHAKTIFNRVSFDGQTSIVKCRPLTG 340
Query: 295 RTHQIRVHLQYTGYPIANDMLY 316
RTHQIRVHLQ+ G+PIAND +Y
Sbjct: 341 RTHQIRVHLQFLGHPIANDPIY 362
>gi|429861123|gb|ELA35827.1| drap deaminase [Colletotrichum gloeosporioides Nara gc5]
Length = 483
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 166/308 (53%), Gaps = 27/308 (8%)
Query: 40 VWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYV 99
V TP Y F G R V PY+F + ++ K RW G+ ++D++ +EF+ R +YY
Sbjct: 47 VITTPVGDMWPRPYFFEGGFRRVAPYHFTYRTNAKQRWRGRKLIDIYEDEFRDRTVEYYR 106
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPS 159
A++ GRI V+ + V + VK+ ++H +HRHEPPV A + ++ ++ D++ V KP
Sbjct: 107 WAMETGRIVVNGKAVGPDHLVKNGDVVNHTIHRHEPPVTAEPIRVIHEDDDMIVVNKPSG 166
Query: 160 VPVHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIE 217
VPVHP G+Y N+++ I+++E P +P HRLDRL SGL+ + +N A QI
Sbjct: 167 VPVHPAGRYMYNSLIEIMKSERGEHFVP-YPCHRLDRLTSGLMFIGKNQPAAVRLSDQIV 225
Query: 218 AGKVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLG-DTPLK 267
A V K Y+ARV G FP+G+ V D + +N + G+S L +P
Sbjct: 226 ARTVRKEYLARVIGKFPDGDVVCDQPVLQISPRLGLNRVRANGKSARTVFKRLAYYSPEN 285
Query: 268 GKAACTKFTRIST--------------NGTHSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
A T R T +SIV C P+TGRTHQIRVHLQ+ G+PI ND
Sbjct: 286 PSATTTTEDRPKTPEELEAERHRPWLNKEGYSIVRCLPLTGRTHQIRVHLQHLGHPIQND 345
Query: 314 MLYLCEHV 321
LY + V
Sbjct: 346 PLYANQRV 353
>gi|402072726|gb|EJT68436.1| DRAP deaminase [Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 476
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 165/293 (56%), Gaps = 42/293 (14%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y+ DG R V PY+F + + K RW + ++++F EF+ RP +YY ++ G + V+ +
Sbjct: 56 YVIEDGLRRVAPYHFVYNTWCKERWRDRALIEIFESEFRDRPLEYYRMCMEKGAVLVNGK 115
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
MV + VK+ + ISH HRHEPPV A V IL + +++ + KP +PVHP G+Y N+
Sbjct: 116 MVGPEHIVKNGELISHICHRHEPPVTAEPVQILDENDEMIVIDKPSGIPVHPAGRYNFNS 175
Query: 173 VVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
VV IL+++ D +P +RLDRL SG++ +A+N+ A+ QI A V K Y+ARV
Sbjct: 176 VVEILRSQRTQDFK-AYPCNRLDRLTSGIMFIAKNSKAAERLGVQIRARTVRKEYVARVI 234
Query: 231 GVFPEGEQVVD---------VNINYNASAGRST----------------AESGDSLGDT- 264
G FP+GE V + + +N + GR + + G++LG+
Sbjct: 235 GRFPDGEVVCNQPILQISPKLGLNRVRANGRPSRTVFKRLAYYPPQQPASGQGETLGEES 294
Query: 265 -PLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
P +GK +SIV C P+TGRTHQ+RVHLQ+ G+PI ND +Y
Sbjct: 295 RPWRGKEG------------YSIVRCLPVTGRTHQLRVHLQHLGHPIENDPIY 335
>gi|71002582|ref|XP_755972.1| DRAP deaminase (Rib2) [Aspergillus fumigatus Af293]
gi|66853610|gb|EAL93934.1| DRAP deaminase (Rib2), putative [Aspergillus fumigatus Af293]
gi|159130027|gb|EDP55141.1| DRAP deaminase (Rib2), putative [Aspergillus fumigatus A1163]
Length = 526
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 165/301 (54%), Gaps = 30/301 (9%)
Query: 43 TPANP-PVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSA 101
TP +P P+ Y F G R VKPYY+ + ++ K RW G+ + ++F EF+ RP +YYV A
Sbjct: 27 TPCDPWPIP--YYFEGGLRRVKPYYYTYNTYCKERWRGRQLQEIFTSEFRDRPAEYYVQA 84
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
+ G++ V+ + +K+ + ISH LHRHEPPV ++ I+ ++ D+L + KP VP
Sbjct: 85 LADGKVTVNGKTAAPDTVIKNGEVISHTLHRHEPPVTGHEIGIIHEDNDILVIDKPAGVP 144
Query: 162 VHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
VH G+Y N++V IL+++ + P P +RLDRL SG++ +A++ AD +++
Sbjct: 145 VHAAGRYHYNSIVEILRSQRGQEFVPR-PCNRLDRLTSGVMFIAKHPKAADAITIKLKQR 203
Query: 220 KVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLGDTPLKGKA 270
V K YIARV G FP+G V D + +N + G+ L P A
Sbjct: 204 TVQKEYIARVKGRFPDGVVVCDQPIMSVSPKLGLNRVRATGKDAKTKFRRLAYYPPASPA 263
Query: 271 ACTKFTRISTNGT---------------HSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
++ +G +SIV C P+TGRTHQIRVHLQ+ G+PI ND +
Sbjct: 264 PERDEDEVTASGDRPATPPPLLANESEGYSIVHCLPLTGRTHQIRVHLQFLGHPITNDPI 323
Query: 316 Y 316
Y
Sbjct: 324 Y 324
>gi|367006629|ref|XP_003688045.1| hypothetical protein TPHA_0M00360 [Tetrapisispora phaffii CBS 4417]
gi|357526352|emb|CCE65611.1| hypothetical protein TPHA_0M00360 [Tetrapisispora phaffii CBS 4417]
Length = 626
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/260 (38%), Positives = 154/260 (59%), Gaps = 11/260 (4%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R + PY F + + K RW + ++D+F EF+ R YY+ + G++ ++ E +
Sbjct: 121 RKITPYLFTYKTFCKLRWRDRKLIDVFVNEFRDREESYYIKTIAAGKVFLNNEPANLDSV 180
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ I+H +HRHEPP+ + + + + D+L + KP + VHP G++R NT+ IL+
Sbjct: 181 IRNGDYITHQIHRHEPPITSRPIKTVFENDDILAIDKPSGIAVHPTGRFRFNTITKILRK 240
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ + + P +RLDRL SGL+ LA+ AD Q++A +V K YIARV G FP E V
Sbjct: 241 KLGYS-VHPCNRLDRLTSGLMFLAKTPKGADEMGDQLKAREVTKEYIARVVGEFPIEETV 299
Query: 240 VDV---NINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRT 296
V++ +I+ S + + D K A T F+RIS +G S+V C+P+TGRT
Sbjct: 300 VELPLRSIDPRVSLN-AVCKGNDE------NAKHAKTIFSRISYDGKTSVVKCKPLTGRT 352
Query: 297 HQIRVHLQYTGYPIANDMLY 316
HQIRVHLQY G+PIAND +Y
Sbjct: 353 HQIRVHLQYLGHPIANDPIY 372
>gi|241955527|ref|XP_002420484.1| DRAP deaminase, putative; pseudouridine synthase, putative [Candida
dubliniensis CD36]
gi|223643826|emb|CAX41563.1| DRAP deaminase, putative [Candida dubliniensis CD36]
Length = 589
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 162/273 (59%), Gaps = 12/273 (4%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
+Y+ R V PY++ ++++ K RW + ++D+F +EF+ R D Y AV+ G ++V+
Sbjct: 81 NYLIEGRLRRVTPYFYTYLTYCKLRWQDRKLIDVFIDEFRDRTPDAYRKAVEGGLVKVNS 140
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
++ + +++ ISH +R EPPV + ++ I+ ++ D+L + KP +PVHP G+YR N
Sbjct: 141 KVANLETILRNGDLISHRSYRREPPVSSREIKIVFEDDDLLVIDKPSGIPVHPTGRYRYN 200
Query: 172 TVVGILQAEHDLAPLF-PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
T+ + EH++ + P +RLDRL SGL+ L +++ A+ QI V K YIARV
Sbjct: 201 TITKVF--EHEMGKIVHPCNRLDRLTSGLMFLGKSSKGANNMMSQIRDRNVTKEYIARVK 258
Query: 231 GVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN--GTHSIVL 288
G FP +VD + + + + T D+ GK A T+F R+S + S+V
Sbjct: 259 GEFPLERLIVDKPL--STKSPKLTLNVVDTEN-----GKEAKTEFQRVSYDPMTNTSVVK 311
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
C P+TGRTHQIRVHLQ+ GYPIAND LY E V
Sbjct: 312 CHPLTGRTHQIRVHLQFLGYPIANDPLYSSEFV 344
>gi|68482658|ref|XP_714726.1| hypothetical protein CaO19.10687 [Candida albicans SC5314]
gi|68482929|ref|XP_714595.1| hypothetical protein CaO19.3177 [Candida albicans SC5314]
gi|46436176|gb|EAK95543.1| hypothetical protein CaO19.3177 [Candida albicans SC5314]
gi|46436316|gb|EAK95680.1| hypothetical protein CaO19.10687 [Candida albicans SC5314]
Length = 589
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/274 (39%), Positives = 161/274 (58%), Gaps = 14/274 (5%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
+Y+ R V PY++ ++++ K RW + ++D+F +EF+ R D Y AV+ G ++V+
Sbjct: 81 NYVIEGRLRRVTPYFYTYLTYCKLRWQDRKLIDVFIDEFRDRTPDAYRMAVEEGLVKVNS 140
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
++ + +++ ISH +R EPPV + D+ I+ ++ D+L + KP +PVHP G+YR N
Sbjct: 141 QVANLETILRNGDLISHRSYRREPPVSSRDIKIVFEDDDLLVIDKPGGIPVHPTGRYRYN 200
Query: 172 TVVGILQAEHDLAPLF-PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
TV I EH+ + P +RLDRL SGL+ L +++ A+ QI V K YIARV
Sbjct: 201 TVTKIF--EHEKGKIVHPCNRLDRLTSGLMFLGKSSKGANNMMSQIRDRNVTKEYIARVK 258
Query: 231 GVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK-GKAACTKFTRISTN--GTHSIV 287
G FP +VD + ST +L ++ GK A T+F R+S + S+V
Sbjct: 259 GEFPLDRIIVDKPL--------STKSPKLTLNVVDMENGKEAKTEFQRVSYDPITNTSVV 310
Query: 288 LCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
C P+TGRTHQIRVHLQ+ GYPIAND +Y E V
Sbjct: 311 KCHPLTGRTHQIRVHLQFLGYPIANDPIYSSEFV 344
>gi|296815982|ref|XP_002848328.1| pseudouridine synthase [Arthroderma otae CBS 113480]
gi|238841353|gb|EEQ31015.1| DRAP deaminase [Arthroderma otae CBS 113480]
Length = 519
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 169/303 (55%), Gaps = 31/303 (10%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P + Y+ + G V PYY+ + ++ K RW GK ++++F EF+ RP YY A+
Sbjct: 25 TPCDPWPRPYYVEK-GLLRVAPYYYTYNTYCKERWRGKKLLEIFTTEFRDRPKGYYTDAI 83
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ GRI +D + + + Q +SH LHRHEPPV + + I+ ++ D++ + KP +PV
Sbjct: 84 EGGRITIDGVIATADSIINNGQVVSHTLHRHEPPVTSLRIKIIHEDNDIIVIDKPAGIPV 143
Query: 163 HPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
HP G+Y N++V I++AE H P +P +RLDRL SG++ + ++ A+ Q + +
Sbjct: 144 HPAGRYNYNSIVEIMRAERGHGWNP-YPCNRLDRLTSGIMFIGKHPKAAEQMAQALRSRT 202
Query: 221 VIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSL--------GD 263
+ K YIARV G FP+G + D + +N ++G+ + D
Sbjct: 203 IQKEYIARVKGYFPDGVVLCDQPMLKVSPILGLNRVRASGKEATTKFRRIAYYPPMKRAD 262
Query: 264 TPLKGKAACTK--FTRIST--------NGTHSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
P + K ++ TR +T + +SIV C P+TGRTHQIRVHLQ+ G+PI ND
Sbjct: 263 NPDETKPVVSQDPETRAATPPPSPADVDEGYSIVHCLPLTGRTHQIRVHLQFLGHPITND 322
Query: 314 MLY 316
+Y
Sbjct: 323 PIY 325
>gi|328868208|gb|EGG16588.1| pseudouridine synthase family protein [Dictyostelium fasciculatum]
Length = 558
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 145/260 (55%), Gaps = 12/260 (4%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R+V PY F F + K RW G+ ++ +F EEF P Y ++ G I+V+ + V Y
Sbjct: 166 RHVDPYSFTFKVNAKERWFGRNLLSMFTEEFSQLPERIYRQKIENGWIRVNGQQTTVDYC 225
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
V I H +HRHEPPV + + I+ + + + V KP S+PVHPCG++R N+++ +L
Sbjct: 226 VGRKDMIEHRVHRHEPPVTSAPIKIVANDDEYVAVDKPSSIPVHPCGRFRHNSLIYVLAK 285
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
E+ L LF VHRLDRL SGLLILA++ A I G+V KRY+A V G F E V
Sbjct: 286 EYGLNNLFGVHRLDRLTSGLLILAKSTESAQKMSGAIMKGEVSKRYVALVKGKFSNDEVV 345
Query: 240 VDVNINY-NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPITGRT 296
VD + N G L GK + T F +S + S+V P TGRT
Sbjct: 346 VDQPLKVQNHRLG---------LNMVAPDGKPSTTVFNIVSYDAETDTSVVCATPKTGRT 396
Query: 297 HQIRVHLQYTGYPIANDMLY 316
HQIR+HLQ+ G+PI ND LY
Sbjct: 397 HQIRLHLQWLGHPILNDPLY 416
>gi|294657495|ref|XP_459803.2| DEHA2E11374p [Debaryomyces hansenii CBS767]
gi|199432736|emb|CAG88042.2| DEHA2E11374p [Debaryomyces hansenii CBS767]
Length = 582
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 113/284 (39%), Positives = 158/284 (55%), Gaps = 19/284 (6%)
Query: 57 DGR-RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
DGR R V PY+F ++++ K RW + ++D+F +EF+ R D+Y + G++ ++++
Sbjct: 81 DGRLRRVNPYFFTYLTYCKMRWRDRKLLDIFVKEFRDRDADFYKKTIAAGQVTLNKKPAD 140
Query: 116 VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+ V++ ISH HRHEP V + + I+ ++ +++ + KP + VHP G+YR NT+
Sbjct: 141 LDSIVRNGDLISHRCHRHEPSVSSRGIKIVHEDENIIAIDKPSGIAVHPTGRYRYNTITK 200
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
I Q E + P +RLDRL SGL+ L +NA AD F QQI V K YIARV G F
Sbjct: 201 IFQHEFGKV-VHPCNRLDRLTSGLMFLGKNAKGADAFVQQIRDRTVKKEYIARVVGKFDI 259
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPL-KGKAACTKFTRISTN--GTHSIVLCEPI 292
G+ VD + T L +GK A T F RIS + SIV C P
Sbjct: 260 GDVEVDKPLK--------TVSPKHGLNRVDFDEGKEAKTVFRRISYDPESDTSIVKCFPF 311
Query: 293 TGRTHQIRVHLQYTGYPIANDMLYLCEHV------THREGMSAD 330
TGRTHQIRVHLQY G+ IAND +Y V H EG +AD
Sbjct: 312 TGRTHQIRVHLQYIGHAIANDPMYSNATVWGKNLGKHGEGENAD 355
>gi|238882595|gb|EEQ46233.1| DRAP deaminase [Candida albicans WO-1]
Length = 589
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 160/273 (58%), Gaps = 12/273 (4%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
+Y+ R V PY++ ++++ K RW + ++D+F +EF+ R D Y AV+ G ++V+
Sbjct: 81 NYVIEGRLRRVTPYFYTYLTYCKLRWQDRKLIDVFIDEFRDRTPDAYRMAVEEGLVKVNS 140
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
++ + +++ ISH +R EPPV + D+ I+ ++ D+L + KP +PVHP G+YR N
Sbjct: 141 QVANLETILRNGDLISHRSYRREPPVSSRDIKIVFEDDDLLVIDKPGGIPVHPTGRYRYN 200
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV I + E + P +RLDRL SGL+ L +++ A+ QI V K YIARV G
Sbjct: 201 TVTKIFEHEKG-KIVHPCNRLDRLTSGLMFLGKSSKGANNMMSQIRDRNVTKEYIARVKG 259
Query: 232 VFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK-GKAACTKFTRISTN--GTHSIVL 288
FP +VD + ST +L ++ GK A T+F R+S + S+V
Sbjct: 260 EFPLDRIIVDKPL--------STKSPKLTLNVVDMENGKEAKTEFQRVSYDPITNTSVVK 311
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
C P+TGRTHQIRVHLQ+ GYPIAND +Y E V
Sbjct: 312 CHPLTGRTHQIRVHLQFLGYPIANDPIYSSEFV 344
>gi|443894745|dbj|GAC72092.1| RNA pseudouridylate synthases [Pseudozyma antarctica T-34]
Length = 1146
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 150/266 (56%), Gaps = 12/266 (4%)
Query: 55 FRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV 114
+DG R +PY++EF ++ K RW G+ ++++ EF+ R +YYV A+ G V+ E
Sbjct: 17 LQDGLRKTQPYWYEFQTYAKLRWFGRELIEIMTTEFRDRTKEYYVWAIHKGICTVNGEKA 76
Query: 115 PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPD--VLTVCKPPSVPVHPCGQYRKNT 172
+ + KI + +HRHEPPV + I+ ++ D +L + KP S+PVH G+Y ++T
Sbjct: 77 DIHQVIGDGDKICNSVHRHEPPVTDEPIKIIHRDDDEGILVIVKPGSIPVHAAGRYLRHT 136
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
+ +L+ EH + ++ +RLDRL SG+++ + A Q AG+V K Y+ RV G
Sbjct: 137 LTDLLRTEHGIQMVYTTNRLDRLTSGIMVCSTKKETASRLGAQFAAGQVSKAYVCRVRGQ 196
Query: 233 FPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCE 290
FPEGE V I T + + KGK T F R+S + S+V C
Sbjct: 197 FPEGEIVCKEPI--------LTIDRQSGVNIVHPKGKYCETIFVRLSYDAETDSSVVFCR 248
Query: 291 PITGRTHQIRVHLQYTGYPIANDMLY 316
PITGRTHQIRVH+QY G+PI ND +Y
Sbjct: 249 PITGRTHQIRVHVQYLGHPICNDPIY 274
>gi|169846844|ref|XP_001830136.1| tRNA-pseudouridine synthase [Coprinopsis cinerea okayama7#130]
gi|116508906|gb|EAU91801.1| tRNA-pseudouridine synthase [Coprinopsis cinerea okayama7#130]
Length = 583
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 181/339 (53%), Gaps = 19/339 (5%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G + + PY++ + + K RW G+ ++++ + EF+ R +YY A++ G V+ ++ +
Sbjct: 62 GLKKIAPYWYPYTTMTKMRWIGRELLEVVSTEFRDRSMEYYRYALESGVTTVNGQVASPT 121
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQK--EPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+K +I + +HRHEPPV V IL + E + + V KP S+PVH G+Y KNT++
Sbjct: 122 TILKDGDRIENVVHRHEPPVTDTPVRILHRDDEREFIVVDKPGSIPVHASGRYYKNTLIE 181
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL + + +P +RLDRL SGL+I+ + +A ++ AG V K Y+ARV G FPE
Sbjct: 182 ILVHDFGIKKCYPANRLDRLTSGLMIMPLSPERARTLTEEFTAGTVKKEYVARVKGKFPE 241
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFT--RISTNGTHSIVLCEPIT 293
G V + + T + L GK A T FT R N S+V CEP T
Sbjct: 242 GSVVCEQPL--------LTVDRQMGLNIVHPDGKPAKTVFTLIRYDENTNSSVVKCEPHT 293
Query: 294 GRTHQIRVHLQYTGYPIANDMLYLCEHVTHRE----GMSADRAAAYSHHSPPPVSSDKSE 349
GR+HQ+RVHLQY G+PIAND +Y E + ++ G+ + S +PPP +E
Sbjct: 294 GRSHQLRVHLQYLGHPIANDPIYSEERIWGKKCGKGGIDTTPSNERSAPAPPPHLQALTE 353
Query: 350 --SSSEDFSIDPMCTNCPNLAPKGKRLLSSNSLEDLCYG 386
S E S D N + AP+ K LL + +D+ G
Sbjct: 354 CVGSPESLSKDASPANGDSAAPRPK-LLPRETGDDIGMG 391
>gi|407923439|gb|EKG16510.1| RNA-binding S4 [Macrophomina phaseolina MS6]
Length = 502
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/320 (35%), Positives = 171/320 (53%), Gaps = 45/320 (14%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVD-E 111
Y +G R V+PY+F + ++ K RW G+ ++D+F+ EF+ RP +YY ++ G I V+ +
Sbjct: 45 YYLENGLRRVQPYHFTYNTYCKERWRGRELLDIFSSEFRDRPVEYYKEGIESGTIVVNGK 104
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V + VK+ ISH +HRHEPPV A + ++ ++ D++ + KP VPVHP G+Y N
Sbjct: 105 PASSVHHIVKNGDIISHTMHRHEPPVTADPIGVVHEDADIIVINKPAGVPVHPAGRYNYN 164
Query: 172 TVVGILQAEHDLAPLF---PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIAR 228
+VV IL+AE A F P +RLDRL SG++ + +N + AD QI+ V K Y+AR
Sbjct: 165 SVVEILRAERGYA--FNPSPCNRLDRLTSGVMFIGKNRAAADDLSVQIKQRTVKKEYVAR 222
Query: 229 VNGVFPEGEQVVDV------------NINYNASAGRST-------------------AES 257
V G FPEGE V + + N R+ A++
Sbjct: 223 VVGEFPEGEIVCEKPILQISPKLGLNRVRANGKEARTVFRRLAYYPPKEEEEKKKKQADA 282
Query: 258 GDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYL 317
G + +A + R+ +SIV C P+TGRTHQIRVHLQ+ G+PI+ND +Y
Sbjct: 283 GLNADAAKDGAEAEGKPWKRLR---GYSIVRCMPLTGRTHQIRVHLQFLGHPISNDPIYA 339
Query: 318 CEHVTHREGMSADRAAAYSH 337
+ V D AA+ H
Sbjct: 340 NQRV-----FGPDLAASDEH 354
>gi|389634841|ref|XP_003715073.1| DRAP deaminase [Magnaporthe oryzae 70-15]
gi|351647406|gb|EHA55266.1| DRAP deaminase [Magnaporthe oryzae 70-15]
Length = 487
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 167/298 (56%), Gaps = 29/298 (9%)
Query: 38 EIVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDY 97
E++W P Y+ DG R V+PY+F + + VK RW G+ +VD+F EF+ RP +Y
Sbjct: 56 EVIWPPP--------YVIEDGLRRVEPYHFAYRTWVKERWRGRALVDVFESEFRDRPIEY 107
Query: 98 YVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKP 157
Y ++ G + V+ + V ++ +K+ + I+H HRHEPP A V +L ++ +++ + KP
Sbjct: 108 YRECMEKGSVLVNAKKVGPNHILKNGELIAHICHRHEPPCTADPVQVLHEDDEMIVINKP 167
Query: 158 PSVPVHPCGQYRKNTVVGILQAEHDLA-PLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
+PVHP G+Y N+VV ++++E +P +RLDRL SG++ +A+ A +QI
Sbjct: 168 SGMPVHPAGRYNFNSVVEVMRSERSRDFKAYPCNRLDRLTSGIMFIAKTPQAACKMGEQI 227
Query: 217 EAGKVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGR---------STAESG 258
V K Y+ARV G FP+GE + + + +N + GR +
Sbjct: 228 MGRTVRKEYLARVIGRFPDGEVICNEPILQISPKLGLNRVRANGRHARTVFKRLAYYPPA 287
Query: 259 DSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ G+ G+AA + R +SIV C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 288 EGQGNEAKPGEAANGRPWR--NKQGYSIVRCLPVTGRTHQIRVHLQHLGHPIENDPIY 343
>gi|326472889|gb|EGD96898.1| DRAP deaminase [Trichophyton tonsurans CBS 112818]
Length = 528
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 169/311 (54%), Gaps = 38/311 (12%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYV--- 99
TP +P + YI + G R V PYY+ + ++ K RW GK ++D+++ EF+ RP YY
Sbjct: 25 TPCDPWPRPYYIEK-GLRRVAPYYYTYNTYCKERWRGKNLLDIYSTEFRDRPNGYYFELK 83
Query: 100 --------SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDV 151
+A+ GRI +D ++ + + Q ISH LHRHEPPV + + I+ ++ D+
Sbjct: 84 LILIILQKAAIDGGRITIDGKVATADSIINNGQVISHTLHRHEPPVTSRPIKIIHEDEDI 143
Query: 152 LTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKAD 210
+ + KP +PVHP G+Y N+++ I+++E L + +P +RLDRL SG++ L ++ A+
Sbjct: 144 IVIDKPAGIPVHPAGRYNYNSIIEIMRSERGLGWIPYPCNRLDRLTSGIMFLGKHPKSAE 203
Query: 211 LFRQQIEAGKVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTA------ 255
Q + + + K YIARV G FP+G + D + +N + G+
Sbjct: 204 QMAQSLRSRTLRKEYIARVKGYFPDGVVLCDQPMLKVSPILGLNRVRATGKDAQTKFRRI 263
Query: 256 ----------ESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQY 305
++G++ G +A+ + +SIV C P+TGRTHQIRVHLQ+
Sbjct: 264 AYYPPVEKENKNGETTGSQGPDSRASTPPPLPADVDEGYSIVHCLPLTGRTHQIRVHLQF 323
Query: 306 TGYPIANDMLY 316
G+PI ND +Y
Sbjct: 324 LGHPITNDPIY 334
>gi|440475570|gb|ELQ44239.1| DRAP deaminase [Magnaporthe oryzae Y34]
gi|440486311|gb|ELQ66191.1| DRAP deaminase [Magnaporthe oryzae P131]
Length = 553
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 167/298 (56%), Gaps = 29/298 (9%)
Query: 38 EIVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDY 97
E++W P Y+ DG R V+PY+F + + VK RW G+ +VD+F EF+ RP +Y
Sbjct: 56 EVIWPPP--------YVIEDGLRRVEPYHFAYRTWVKERWRGRALVDVFESEFRDRPIEY 107
Query: 98 YVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKP 157
Y ++ G + V+ + V ++ +K+ + I+H HRHEPP A V +L ++ +++ + KP
Sbjct: 108 YRECMEKGSVLVNAKKVGPNHILKNGELIAHICHRHEPPCTADPVQVLHEDDEMIVINKP 167
Query: 158 PSVPVHPCGQYRKNTVVGILQAEHDLA-PLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
+PVHP G+Y N+VV ++++E +P +RLDRL SG++ +A+ A +QI
Sbjct: 168 SGMPVHPAGRYNFNSVVEVMRSERSRDFKAYPCNRLDRLTSGIMFIAKTPQAACKMGEQI 227
Query: 217 EAGKVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGR---------STAESG 258
V K Y+ARV G FP+GE + + + +N + GR +
Sbjct: 228 MGRTVRKEYLARVIGRFPDGEVICNEPILQISPKLGLNRVRANGRHARTVFKRLAYYPPA 287
Query: 259 DSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ G+ G+AA + R +SIV C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 288 EGQGNEAKPGEAANGRPWR--NKQGYSIVRCLPVTGRTHQIRVHLQHLGHPIENDPIY 343
>gi|354544628|emb|CCE41353.1| hypothetical protein CPAR2_303420 [Candida parapsilosis]
Length = 581
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 164/292 (56%), Gaps = 13/292 (4%)
Query: 29 GNGNSSNNMEIVWQTPANPPVKEDYIFRDGR-RNVKPYYFEFISHVKNRWAGKTIVDLFA 87
G NSS++ I +T A + DG+ R V PYYF ++++ K RW + ++D+F
Sbjct: 52 GGSNSSDDTLIEGKTIAEEEAEGAKYIIDGKLRRVTPYYFTYLTYCKLRWRDRILLDIFT 111
Query: 88 EEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQK 147
+EF+ R + Y A++ G + ++ + + V++ ISH R EPPV + + I+ +
Sbjct: 112 DEFRDRTPEAYKKAIEDGMVSINSKTANLETVVRNGDLISHRGFRREPPVNSSPIKIVFE 171
Query: 148 EPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLA-PLFPVHRLDRLVSGLLILARNA 206
++L + KP +P HP G+YR NT+ ILQ HD+ + P +RLDRL SGL+ L + A
Sbjct: 172 NDELLVIDKPSGIPAHPTGRYRYNTITKILQ--HDMGKTVHPCNRLDRLTSGLMFLGKTA 229
Query: 207 SKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL 266
++ +QI V K YIARV G FP +D + Y S + +
Sbjct: 230 QGSNDLMKQIRDRNVSKEYIARVKGQFPTTNLTIDKPL-YTLSPKHTLNVVDEK------ 282
Query: 267 KGKAACTKFTRISTN--GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+GK A T+F R+S + S+V C P+TGRTHQIRVHLQY GYPIAND +Y
Sbjct: 283 QGKEAVTEFKRVSYDPVTDTSVVKCHPLTGRTHQIRVHLQYIGYPIANDPIY 334
>gi|451995278|gb|EMD87746.1| hypothetical protein COCHEDRAFT_1196893 [Cochliobolus
heterostrophus C5]
Length = 466
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 170/300 (56%), Gaps = 23/300 (7%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P Y DG R V PY++ + ++ K RW G+ I+D+FA EF+ RP +YY A+
Sbjct: 31 TPCDP-WPPPYYLEDGLRKVTPYHYTYNTYCKQRWRGREILDIFASEFRDRPAEYYEQAI 89
Query: 103 KCGRIQVDEEMVPVSYT-VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
GR+ V+ + VP + T + + ISH LHRHEPP A + I+ ++ D++ + KP +P
Sbjct: 90 IDGRVVVNGKPVPSTKTIINNGDVISHTLHRHEPPCTAQPIGIVHEDNDMIVINKPAGMP 149
Query: 162 VHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
VHP G+Y N+++ I++A+ + PL P +RLDRL SG++ + ++ A+ QI
Sbjct: 150 VHPAGRYNFNSIIEIMRADRGYGWNPL-PCNRLDRLTSGIMFIGKHKQAAEDMSAQIRGR 208
Query: 220 KVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLGDTPLK--G 268
V K YI RV G FPEGE + + + +N + G+ L P K G
Sbjct: 209 TVKKEYITRVVGEFPEGEILCEKPILQISPKLGLNRVRANGKEAKTVFKRLAYYPPKDDG 268
Query: 269 KAACTKFTRISTNGT-------HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
++ + + +G +SIV C P+TGRTHQ+RVHLQ+ G+PI+ND +Y + V
Sbjct: 269 NSSQEQESEKDPDGQPWKKLRGYSIVRCFPVTGRTHQLRVHLQFLGHPISNDPIYANQRV 328
>gi|116201645|ref|XP_001226634.1| pseudouridine synthase [Chaetomium globosum CBS 148.51]
gi|88177225|gb|EAQ84693.1| hypothetical protein CHGG_08707 [Chaetomium globosum CBS 148.51]
Length = 475
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/309 (35%), Positives = 167/309 (54%), Gaps = 37/309 (11%)
Query: 48 PVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRI 107
P Y F DG R V PY++ + + K RW G+ ++++F EF+ RP +YY A++ G +
Sbjct: 40 PWPRPYYFEDGLRRVSPYFYTYNTWCKERWRGRQLIEVFQSEFRDRPLEYYREAMESGLV 99
Query: 108 QVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQ 167
V+ + V + +K+ ISH HRHEPPV + + I+ ++ D++ + KP VPVHP G+
Sbjct: 100 AVNGKTVGPHHILKNGHLISHTTHRHEPPVTSDPIGIIHEDDDMIVINKPSGVPVHPAGR 159
Query: 168 YRKNTVVGILQAEH--DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRY 225
Y N++V I++AE D P P +RLDRL SG++ +A++ A+ QI V K Y
Sbjct: 160 YNYNSIVEIMKAERGLDFTPR-PCNRLDRLTSGIMFIAKHTKAAEQLGVQIFQRSVRKEY 218
Query: 226 IARVNGVFPEGEQVVDVNI------------NYNASAGRS----------------TAES 257
+ARV G FP+GE V D I N A R+ +
Sbjct: 219 VARVIGKFPDGEVVCDQPILQISPKLGLNRVRANGKAARTVFKRLAYYPPASGLAVSPND 278
Query: 258 GDSLG--DTPLKGKAACT---KFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAN 312
G + G + P+ G++ R + G +SIV C P+TGRTHQ+RVHLQ+ G+PI N
Sbjct: 279 GGTTGPAEEPVSGRSESAPRPTGGRKADEG-YSIVRCLPVTGRTHQLRVHLQFLGHPIQN 337
Query: 313 DMLYLCEHV 321
D +Y + V
Sbjct: 338 DPIYANQKV 346
>gi|410077315|ref|XP_003956239.1| hypothetical protein KAFR_0C01090 [Kazachstania africana CBS 2517]
gi|372462823|emb|CCF57104.1| hypothetical protein KAFR_0C01090 [Kazachstania africana CBS 2517]
Length = 460
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 162/289 (56%), Gaps = 5/289 (1%)
Query: 28 NGNGNSSNNMEIVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFA 87
+ G +EI+ + + + + R VKPY+F + + K RW + ++D+F
Sbjct: 46 DKQGFKLKKVEIIQKDTGKADPEYEVVLDKSLRRVKPYFFHYKTFCKERWRDRKLIDIFL 105
Query: 88 EEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQK 147
+EF+ R DYY + G I V+ ++ VK+ I H +HRHEP V + + + +
Sbjct: 106 KEFRDRDADYYRKTINMGNILVNNLPSTLNTVVKNGDLIVHKVHRHEPAVPSKPIKTVFE 165
Query: 148 EPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNAS 207
+L + K VP HP G++R NTV IL+ + A + P +RLD+ SGL+ LA+ +
Sbjct: 166 NDKILVIDKTGGVPAHPNGRFRFNTVTKILERQKGYA-VHPCNRLDKATSGLMFLAKTPN 224
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
AD F ++++ V K Y+ARV G FP G+ VVD + + A + + L D +
Sbjct: 225 GADEFADELKSRSVSKEYVARVVGEFPLGDIVVDKPL--KSIAPKVSLNGVCELTD--IG 280
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T F RIS +G SIV C+P+TGRTHQ+RVHLQY G+PIAND LY
Sbjct: 281 AKYARTIFKRISYDGNTSIVQCKPLTGRTHQLRVHLQYLGFPIANDPLY 329
>gi|225682103|gb|EEH20387.1| DRAP deaminase [Paracoccidioides brasiliensis Pb03]
Length = 525
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 168/318 (52%), Gaps = 46/318 (14%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P + Y G R V PY+F + ++ K RW G+ ++D+F EF+ RP +YY A+
Sbjct: 26 TPCDP-LPRPYYIEGGLRRVAPYHFTYNTYCKERWRGRGLLDVFGTEFRDRPREYYKKAI 84
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + ++ + V + +++ ISH LHRHEPPV + + ++ ++ D++ + KP VPV
Sbjct: 85 EDGAVCINGKAVTIDTKIQNGDVISHTLHRHEPPVTSQPIGVIHEDNDMIVIDKPAGVPV 144
Query: 163 HPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
HP G+Y N+V+ I++AE H P +P +RLDRL SG++ + ++ A+ +++ +
Sbjct: 145 HPAGRYNYNSVLEIMKAERGHGWVP-YPCNRLDRLTSGVMFVGKHPKGAEQIGEKLRSRT 203
Query: 221 VIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRST---------------AE 256
V K Y+ARV G FP+G + D + +N ++G+ AE
Sbjct: 204 VRKEYVARVKGKFPDGVVLCDQPMLKISPILGLNRARASGKEARTKFRRIAYYPPYEPAE 263
Query: 257 SGDSLGDTPLKGKAACTKFTRISTNGT------------------HSIVLCEPITGRTHQ 298
G P A IS + T +SIV C P+TGRTHQ
Sbjct: 264 KGSVSSTEPATPPATLPDEMNISNSSTATPTGVATPLPKSSDEEGYSIVHCLPLTGRTHQ 323
Query: 299 IRVHLQYTGYPIANDMLY 316
IRVHLQY GYPI ND +Y
Sbjct: 324 IRVHLQYLGYPITNDPIY 341
>gi|348683906|gb|EGZ23721.1| hypothetical protein PHYSODRAFT_310955 [Phytophthora sojae]
Length = 428
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 130/342 (38%), Positives = 183/342 (53%), Gaps = 32/342 (9%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F +G R V+PY +EF + K RW + ++++F +EF +YY A+ GRI V+ +
Sbjct: 43 YSFANGYRMVEPYVYEFRTFAKARWFDRQLLEIFTKEFGANSPEYYKFAIASGRISVNHK 102
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
+VP +K+ I H HRHEPPV +VS++ ++ D++ V KPPS+P HPCG YR N+
Sbjct: 103 IVPADTVIKNGDLIIHTAHRHEPPVSGEEVSVVYEDDDLIVVSKPPSMPTHPCGAYRHNS 162
Query: 173 VVGILQAEH-DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
+ I+QA DL L VHRLDRL SG+++LA+NA+KA I + K Y+ARV G
Sbjct: 163 LHSIVQATRPDLPQLNIVHRLDRLTSGVVLLAKNAAKAKALSAIIANRQASKMYLARVRG 222
Query: 232 VFPE------GEQVVDVNINYNASAGRSTAESGDSLGDTPLK--------------GKAA 271
FP+ E++V ++ S + G L PL+ GK++
Sbjct: 223 QFPDLLDPAVQEKLVSSAKVTCPASEISFPKEGGVLISCPLRCLSARDGVWECHEEGKSS 282
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCE----HVTHREGM 327
T I T+ S++ C+PITGRTHQIR+HLQ G+PIAND Y E T R
Sbjct: 283 ETLVKLIRTDKCTSLMECKPITGRTHQIRLHLQLIGFPIANDPCYGGELHFGESTERAKE 342
Query: 328 SADRAAAYSHHSPPP-----VSSDKSESSSEDFSIDPMCTNC 364
AD A S PP S+ + E SE + CT C
Sbjct: 343 IAD--AKRSKADLPPKDPVDFSTPRKEEESEGEFMKRTCTWC 382
>gi|343429157|emb|CBQ72731.1| related to DRAP deaminase RIB2 [Sporisorium reilianum SRZ2]
Length = 1144
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 150/265 (56%), Gaps = 12/265 (4%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
RDG R +PY++EF ++ K RW G+ ++++ EF+ R +YYV A+ G V+ +
Sbjct: 19 RDGLRKTQPYWYEFQTYAKQRWFGRELIEIMTTEFRDRTKEYYVWAIHRGICTVNAQKAA 78
Query: 116 VSYTVKSSQKISHFLHRHEPPVMAWDVSILQK--EPDVLTVCKPPSVPVHPCGQYRKNTV 173
+ + KI + +HRHEPPV + I+ + E +L + KP S+PVH G+Y ++T+
Sbjct: 79 IHQPIGDGDKICNSVHRHEPPVTDEPIKIIHRDDEAGMLVIVKPGSIPVHAAGRYLRHTL 138
Query: 174 VGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVF 233
+L+ EH + ++ +RLDRL SG+++ + A Q AG+V K Y+ RV G F
Sbjct: 139 TDLLRTEHGIEMVYTTNRLDRLTSGIMVCSTKKETASRLGAQFAAGQVSKAYVCRVRGCF 198
Query: 234 PEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNG-TH-SIVLCEP 291
P GE V I T + + KGK T F R+S + TH S+V C P
Sbjct: 199 PAGEIVCKQPI--------LTIDRQSGVNIVHPKGKHCETIFVRLSYDAHTHSSVVFCRP 250
Query: 292 ITGRTHQIRVHLQYTGYPIANDMLY 316
ITGRTHQIRVH+Q+ G+PI ND +Y
Sbjct: 251 ITGRTHQIRVHVQFLGHPICNDPIY 275
>gi|315042395|ref|XP_003170574.1| pseudouridine synthase [Arthroderma gypseum CBS 118893]
gi|311345608|gb|EFR04811.1| DRAP deaminase [Arthroderma gypseum CBS 118893]
Length = 516
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 161/301 (53%), Gaps = 28/301 (9%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P + Y+ + G V PYY+ + ++ K RW GK I+++F EF+ R YY +A+
Sbjct: 25 TPCDPWPRPYYVEK-GLLRVAPYYYTYNTYCKERWRGKNILEIFTTEFRDRANGYYKAAI 83
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
GRI +D ++ + + Q ISH LHRHEPPV + + I+ ++ D++ + KP +PV
Sbjct: 84 DNGRITIDGKIATADSIINNGQVISHTLHRHEPPVTSQRIKIIHEDDDIIVIDKPAGIPV 143
Query: 163 HPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
HP G+Y N+++ IL+AE + + +P +RLDRL SG++ L ++ A+ + + +
Sbjct: 144 HPAGRYNYNSIIEILRAERGVGWVPYPCNRLDRLTSGIMFLGKHPKAAEQMAHSLRSRTL 203
Query: 222 IKRYIARVNGVFPEGEQVVDV--------------------------NINYNASAGRSTA 255
K YIARV G FP+G + D I Y +
Sbjct: 204 QKEYIARVKGYFPDGVVLCDQPMLKVSPILGLNRVRATGKDAQTKFRRIAYYPPVKKGDE 263
Query: 256 ESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
+G++ +A+ + + +SIV C P+TGRTHQIRVHLQ+ G+PI ND +
Sbjct: 264 SNGETANSQDPDSRASTPPPSPADVDEGYSIVHCLPLTGRTHQIRVHLQFLGHPITNDPI 323
Query: 316 Y 316
Y
Sbjct: 324 Y 324
>gi|189200266|ref|XP_001936470.1| pseudouridine synthase [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187983569|gb|EDU49057.1| DRAP deaminase [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 475
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 168/299 (56%), Gaps = 26/299 (8%)
Query: 44 PANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVK 103
P PP Y DG R V PY+F + ++ K RW G+ I+D+F+ EF+ RP +YY A+
Sbjct: 35 PWPPP----YYLEDGLRKVTPYHFTYNTYCKERWRGREILDIFSSEFRDRPAEYYEQAII 90
Query: 104 CGRIQVDEEMVPVSYT-VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
GR+ ++ + VP + T VK+ ISH LHRHEPP A + I+ ++ +++ + KP +PV
Sbjct: 91 DGRVVLNGKPVPSTKTIVKNGDVISHTLHRHEPPCTAQPIGIVHEDDNMIVINKPAGMPV 150
Query: 163 HPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
HP G+Y N+++ I++A+ + PL P +RLDRL SG++ + ++ A+ QI
Sbjct: 151 HPAGRYNFNSIIEIMRADRGYGWNPL-PCNRLDRLTSGIMFIGKHKQAAEELSAQIRGRT 209
Query: 221 VIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLGDTPLK--GK 269
V K YI RV G FPEGE + + + +N + G+ + P K G+
Sbjct: 210 VKKEYITRVVGEFPEGEILCEKPILQISPKLGLNRVRANGKEAKTVFKRMAYYPPKDDGR 269
Query: 270 AACTKFTRISTNGT-------HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
+ + G +SIV C P+TGRTHQ+RVHLQ+ G+PI+ND +Y + V
Sbjct: 270 RPNGEDSETDPQGQPWKKLRGYSIVRCFPVTGRTHQLRVHLQFLGHPISNDPIYANQRV 328
>gi|387595421|gb|EIJ93045.1| hypothetical protein NEPG_02001 [Nematocida parisii ERTm1]
Length = 426
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 147/252 (58%), Gaps = 4/252 (1%)
Query: 65 YYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ 124
Y +EF ++ K RW G +VD+ A EFK R Y+V AV G IQ++ V Y +K
Sbjct: 8 YIYEFKAYTKERWVGCKLVDVLAAEFKRRTRLYFVLAVASGSIQINGNSVTDEYVLKHGD 67
Query: 125 KISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLA 184
I+H HRHEPP+ ++ IL ++ DVL V KP +P HP Y K+T+ IL+ + L+
Sbjct: 68 LITHKTHRHEPPIPTDEIDILYEDSDVLVVDKPSGIPCHPNSSYNKHTLTEILKKKCGLS 127
Query: 185 PLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI 244
+ +RLD+ SG++ILA+++ A + ++IE + K Y+ +V+G FPE E +V
Sbjct: 128 FVSAQNRLDKQTSGVVILAKSSKAAVKYHKKIEEKEGFKIYLCKVSGEFPECEVIV---- 183
Query: 245 NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
N S R T + D +GK + T F R+S SI+ C +TGRTHQIRVHLQ
Sbjct: 184 NLPLSISRKTCTTTVFQEDGVFQGKPSITIFRRVSVENGESILACGLVTGRTHQIRVHLQ 243
Query: 305 YTGYPIANDMLY 316
GYPI +DM+Y
Sbjct: 244 AIGYPIIDDMIY 255
>gi|387592800|gb|EIJ87824.1| hypothetical protein NEQG_01896 [Nematocida parisii ERTm3]
Length = 426
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 147/252 (58%), Gaps = 4/252 (1%)
Query: 65 YYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ 124
Y +EF ++ K RW G +VD+ A EFK R Y+V AV G IQ++ V Y +K
Sbjct: 8 YIYEFKAYTKERWVGCKLVDVLAAEFKRRTRLYFVLAVASGSIQINGNSVTDEYVLKHGD 67
Query: 125 KISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLA 184
I+H HRHEPP+ ++ IL ++ DVL V KP +P HP Y K+T+ IL+ + L+
Sbjct: 68 LITHKTHRHEPPIPTDEIDILYEDSDVLVVDKPSGIPCHPNSSYNKHTLTEILKKKCGLS 127
Query: 185 PLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI 244
+ +RLD+ SG++ILA+++ A + ++IE + K Y+ +V+G FPE E +V
Sbjct: 128 FVSAQNRLDKQTSGVVILAKSSKAAVKYHKKIEEKEGFKIYLCKVSGEFPECEVIV---- 183
Query: 245 NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
N S R T + D +GK + T F R+S SI+ C +TGRTHQIRVHLQ
Sbjct: 184 NLPLSISRKTCTTTVFQEDGVFQGKPSITIFRRVSVENGESILACGLVTGRTHQIRVHLQ 243
Query: 305 YTGYPIANDMLY 316
GYPI +DM+Y
Sbjct: 244 AIGYPIIDDMIY 255
>gi|451851912|gb|EMD65210.1| hypothetical protein COCSADRAFT_319371 [Cochliobolus sativus
ND90Pr]
Length = 467
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 170/311 (54%), Gaps = 45/311 (14%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P Y DG R V PY++ + ++ K RW G+ I+++FA EF+ RP +YY A+
Sbjct: 31 TPCDP-WPPPYYLEDGLRKVTPYHYTYNTYCKQRWRGREILEIFASEFRDRPAEYYEQAI 89
Query: 103 KCGRIQVDEEMVPVSYT-VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
GR+ V+ + VP + T + + ISH LHRHEPP A + I+ ++ D++ + KP +P
Sbjct: 90 IDGRVVVNGKPVPSTKTIINNGDIISHTLHRHEPPCTAQPIGIVHEDNDMIVINKPAGMP 149
Query: 162 VHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
VHP G+Y N+++ I++A+ + PL P +RLDRL SG++ + ++ A+ QI
Sbjct: 150 VHPAGRYNFNSIIEIMRADRGYGWNPL-PCNRLDRLTSGIMFIGKHKQAAEDLSAQIRGR 208
Query: 220 KVIKRYIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFT 276
V K YI RV G FPEGE + + + I+ R A GK A T F
Sbjct: 209 TVKKEYITRVVGEFPEGEILCEKPILQISPKLGLNRVRA-----------NGKEAKTVFK 257
Query: 277 RIS-------TNGT-------------------HSIVLCEPITGRTHQIRVHLQYTGYPI 310
R++ NGT +SIV C P+TGRTHQ+RVHLQ+ G+PI
Sbjct: 258 RLAYYPPKNDGNGTQEQEGEKGPDGQPWKKLRGYSIVRCFPVTGRTHQLRVHLQFLGHPI 317
Query: 311 ANDMLYLCEHV 321
+ND +Y + V
Sbjct: 318 SNDPIYANQRV 328
>gi|317035512|ref|XP_001397201.2| pseudouridine synthase [Aspergillus niger CBS 513.88]
gi|350636518|gb|EHA24878.1| hypothetical protein ASPNIDRAFT_48862 [Aspergillus niger ATCC 1015]
Length = 518
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 163/295 (55%), Gaps = 22/295 (7%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P Y F G R VKPY++ + + K RW G+ +VD+F EF+ RP +YY A+
Sbjct: 27 TPCDP-WPAPYYFEGGLRRVKPYHYTYNTFCKERWRGRELVDIFLSEFRDRPAEYYRKAL 85
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + V+ + VK+ Q ISH LHRHEPPV ++ I+ ++ D++ + KP VPV
Sbjct: 86 QDGLVAVNGTPAGPNTVVKNGQIISHTLHRHEPPVTGKEIGIIHEDDDLIVIDKPAGVPV 145
Query: 163 HPCGQYRKNTVVGILQAE-HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
H G+Y N+V+ I++++ H P +RLDRL SG++ L + A A+ +++A +
Sbjct: 146 HSAGRYHYNSVLEIMRSQRHPEWVPRPCNRLDRLTSGVMFLGKTAKAAENMTGKLKARTL 205
Query: 222 IKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLGDTP------- 265
K Y+ARV G FP+G V D V +N + G+ L P
Sbjct: 206 QKEYVARVKGKFPDGVIVCDQPIMSVSPKVGLNRVRATGKEAKTKFRRLAYIPPQAPEPQ 265
Query: 266 ----LKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+G+ A + + +SIV C P+TGRTHQIRVHLQ+ G+PI+ND +Y
Sbjct: 266 SASDAEGRVATPPPIYTNEDEGYSIVHCLPLTGRTHQIRVHLQFLGHPISNDPIY 320
>gi|255952943|ref|XP_002567224.1| Pc21g01540 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588935|emb|CAP95051.1| Pc21g01540 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 526
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 166/309 (53%), Gaps = 44/309 (14%)
Query: 40 VWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYV 99
V TP +P Y G R V PY+F + ++ K RW G+ +V++F EF+ R +YY
Sbjct: 21 VLVTPCDP-WPAPYYLDGGFRRVTPYHFTYNTNCKERWRGRQLVEIFTSEFRDRKPEYYR 79
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPS 159
A++ G +QV+ T+K+ Q ISH LHRHEPPV + V I+ ++ D++ + KP
Sbjct: 80 KALEDGLVQVNGVTARPETTLKNGQVISHTLHRHEPPVTSLPVGIIYEDDDLMVIDKPAG 139
Query: 160 VPVHPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEA 218
VPVH G+Y NTV+ IL++E L P +RLDRL SG++ + ++A AD ++A
Sbjct: 140 VPVHAAGRYNFNTVIQILRSERGSEWLPRPCNRLDRLTSGIMFIGKHAKGADKMAAALKA 199
Query: 219 GKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK--GKAACTKFT 276
V K Y+ARV G FP+G V D I + LG ++ GK A TKF
Sbjct: 200 RSVQKEYVARVKGKFPDGVVVCDQPI----------MQVSPKLGLNRVRATGKEATTKFR 249
Query: 277 RIS-----------------------------TNGTHSIVLCEPITGRTHQIRVHLQYTG 307
R++ T G +SIV C P+TGRTHQIRVHLQ+ G
Sbjct: 250 RLAYYPPESAKETESSSDDERPATPPASFANETEG-YSIVHCLPLTGRTHQIRVHLQFLG 308
Query: 308 YPIANDMLY 316
+PI+ND +Y
Sbjct: 309 HPISNDPIY 317
>gi|344301672|gb|EGW31977.1| DRAP deaminase [Spathaspora passalidarum NRRL Y-27907]
Length = 575
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 157/263 (59%), Gaps = 10/263 (3%)
Query: 57 DGR-RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
DGR R V PYYF ++++ K RW + ++D+F +EF+ + + Y A+ G + ++++
Sbjct: 72 DGRLRRVNPYYFTYLTYCKMRWRDRKLIDVFIDEFRDKSPEAYKKAIGEGHVTLNQKPAN 131
Query: 116 VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+ +++ ISH ++ EPPV + + I+ ++ D++ + KP +PVHP G+YR NTV
Sbjct: 132 LETIIRNGDLISHRSYKREPPVTSRPIKIVYEDDDIIAIDKPSGMPVHPVGRYRYNTVTK 191
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
I Q E + P +RLDRL SGL+ L +++ D F +QI V K YIARV G FP
Sbjct: 192 IFQHEFGRI-VHPCNRLDRLTSGLMFLGKSSKSTDRFVKQIRERSVNKEYIARVVGKFPP 250
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN--GTHSIVLCEPIT 293
E++V + + + G ++ D GK + T+F R+S + SIV C P+T
Sbjct: 251 NEEIV-----VDKPLSTLSPKLGLNVVDEE-NGKESSTEFRRVSYDPETNTSIVKCHPLT 304
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GR+HQIRVHLQY GYPIAND +Y
Sbjct: 305 GRSHQIRVHLQYIGYPIANDPMY 327
>gi|296420214|ref|XP_002839670.1| pseudouridine synthase [Tuber melanosporum Mel28]
gi|295635864|emb|CAZ83861.1| unnamed protein product [Tuber melanosporum]
Length = 456
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 154/280 (55%), Gaps = 11/280 (3%)
Query: 45 ANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKC 104
NPP Y F DG R V PY F + ++ K RW GK ++++F EF+ RP +YY
Sbjct: 89 VNPPPVPQYSFEDGLRRVPPYQFSYNTYCKERWRGKGVLEVFWSEFRDRPLEYYGMNGGG 148
Query: 105 GRIQVDEEMVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVH 163
++ + ++ V +++ + H LHRHEPPV A + + ++ ++ + KP VPVH
Sbjct: 149 AQLASMQTIIASVDSKLENGDMLVHTLHRHEPPVTAKPIETVYEDDRLIVINKPAGVPVH 208
Query: 164 PCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIK 223
P G+Y NTV+ I++ +++ P +RLDRL SGL+ +A+ A+ F Q++ + K
Sbjct: 209 PAGRYNFNTVIEIMKHDYNGHAPLPCNRLDRLTSGLMFMAKTPEAANDFMGQLQTRTIKK 268
Query: 224 RYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI--STN 281
+Y+ARV G FP GE I + L GK A T F R+ +T
Sbjct: 269 QYLARVKGKFPAGEVTCSQPI--------LSVSPKLGLNRVRASGKTAKTLFKRLKYNTE 320
Query: 282 GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
+SIV C P TGRTHQIRVHLQ+ G+PI ND +Y +V
Sbjct: 321 KNYSIVECHPFTGRTHQIRVHLQFLGHPIINDPIYCNRNV 360
>gi|255712643|ref|XP_002552604.1| KLTH0C08756p [Lachancea thermotolerans]
gi|238933983|emb|CAR22166.1| KLTH0C08756p [Lachancea thermotolerans CBS 6340]
Length = 610
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 150/264 (56%), Gaps = 19/264 (7%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R + PY F + + K RW + ++D+F EF+ R YY + G + ++E +
Sbjct: 102 RKIVPYDFTYKTFCKLRWRDRPLIDIFVNEFRDREESYYRKTIARGAVFLNENPANLESI 161
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
V++ ISH +HRHEPPV + + I+ ++ D+ + KP +PVHP G+YR NT+ ILQ
Sbjct: 162 VRNGDLISHKIHRHEPPVTSRPIKIVFEDQDLFVIDKPSGIPVHPTGRYRFNTITKILQK 221
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE-- 237
+ + + P +RLDRL SGL+ LA+ AD Q++A +V K YIARV G FP
Sbjct: 222 QIN-GSVHPCNRLDRLTSGLMFLAKTPRGADHMANQLKAREVKKEYIARVVGEFPAERIS 280
Query: 238 -----QVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPI 292
+ V+ + N ++ E G K A T FTR+S +G S+V C+P
Sbjct: 281 VEKPLKCVEPRLALNGVC--NSEEEG---------AKEAKTVFTRVSFDGETSLVKCQPH 329
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGRTHQIRVHLQY G+PIAND LY
Sbjct: 330 TGRTHQIRVHLQYLGHPIANDPLY 353
>gi|365982483|ref|XP_003668075.1| hypothetical protein NDAI_0A06780 [Naumovozyma dairenensis CBS 421]
gi|343766841|emb|CCD22832.1| hypothetical protein NDAI_0A06780 [Naumovozyma dairenensis CBS 421]
Length = 620
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 176/325 (54%), Gaps = 33/325 (10%)
Query: 2 KRKREEEKSKANDSNSNGNGNGNGNGNGNGNSSNNMEIV--WQTPANPPVKEDYIFRDGR 59
+++R+ E S+A + + NG + N S N ++ ++ P+
Sbjct: 64 QKRRKVENSRAAKTVELRDKNGFKLRLVDANKSKNKQVDPDYEVSIEGPL---------- 113
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +KPYYF + + K RW + ++D+F EF+ R YY + G + ++++ +
Sbjct: 114 RKIKPYYFTYKTFCKERWRDRKLLDVFVTEFRDREEAYYKKTIANGDVYLNDKPANLDSY 173
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ I+H LHRHEPPV++ + + + D+L + KP +PVHP G+YR N++ IL
Sbjct: 174 IRNGDLITHKLHRHEPPVISKPIQTVFENDDILVIDKPSGIPVHPTGRYRFNSITKIL-- 231
Query: 180 EHDLA-PLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQ 238
E DL+ + P +RLD+ SGL+ LA+ AD Q++A +V K YIARV G FP E
Sbjct: 232 ERDLSYTVHPCNRLDKPTSGLMFLAKTPKGADEMGDQLKAREVKKEYIARVVGEFPLEEL 291
Query: 239 VV-------DVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEP 291
VV D + NA + + G + A T F RIS +G S+V C+P
Sbjct: 292 VVVKPLRTIDPKVALNAVC--TMEDDG---------ARHAKTVFKRISYDGQTSLVKCKP 340
Query: 292 ITGRTHQIRVHLQYTGYPIANDMLY 316
+TGR HQIRVHLQY G+PIAND +Y
Sbjct: 341 LTGRQHQIRVHLQYLGFPIANDPIY 365
>gi|330946151|ref|XP_003306701.1| pseudouridine synthase [Pyrenophora teres f. teres 0-1]
gi|311315680|gb|EFQ85200.1| hypothetical protein PTT_19907 [Pyrenophora teres f. teres 0-1]
Length = 475
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 168/310 (54%), Gaps = 48/310 (15%)
Query: 44 PANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVK 103
P PP Y DG R V PY+F + + K RW G+ I+D+F+ EF+ RP +YY A+
Sbjct: 35 PWPPP----YYLEDGLRKVTPYHFTYNTFCKERWRGREILDIFSSEFRDRPAEYYEQAII 90
Query: 104 CGRIQVDEEMVPVSYT-VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
GR+ ++ + VP + T VK+ ISH LHRHEPP A + I+ ++ +++ + KP +PV
Sbjct: 91 DGRVVLNGKPVPSTKTIVKNGDVISHTLHRHEPPCTAQPIGIVHEDDNMIVINKPAGMPV 150
Query: 163 HPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
HP G+Y N+++ I++A+ + PL P +RLDRL SG++ + ++ A+ QI
Sbjct: 151 HPAGRYNFNSIIEIMRADRGYGWNPL-PCNRLDRLTSGIMFIGKHKQAAEELSAQIRGRT 209
Query: 221 VIKRYIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTR 277
V K YI RV G FPEGE + + + I+ R A GK A T F R
Sbjct: 210 VKKEYITRVVGEFPEGEILCEKPILQISPKLGLNRVRA-----------NGKEAKTVFKR 258
Query: 278 IS----------TNGT----------------HSIVLCEPITGRTHQIRVHLQYTGYPIA 311
++ NG +SIV C P+TGRTHQ+RVHLQ+ G+PI+
Sbjct: 259 MAYYPPTDHGKRPNGEDSETDPQGQPWKKLRGYSIVRCFPVTGRTHQLRVHLQFLGHPIS 318
Query: 312 NDMLYLCEHV 321
ND +Y + V
Sbjct: 319 NDPIYANQRV 328
>gi|169775969|ref|XP_001822451.1| pseudouridine synthase [Aspergillus oryzae RIB40]
gi|238502633|ref|XP_002382550.1| pseudouridine synthase [Aspergillus flavus NRRL3357]
gi|83771186|dbj|BAE61318.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220691360|gb|EED47708.1| DRAP deaminase (Rib2), putative [Aspergillus flavus NRRL3357]
gi|391871061|gb|EIT80227.1| RNA pseudouridylate synthase [Aspergillus oryzae 3.042]
Length = 522
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 161/293 (54%), Gaps = 20/293 (6%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP PP Y F G R V PY++ + + K RW G+ +VD+F EF+ RP +YY A+
Sbjct: 27 TPCEPPTGP-YYFEGGFRRVSPYHYTYNTFCKERWRGRELVDIFISEFRDRPPEYYREAL 85
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ GR+ V+ + VK+ ISH LHRHEPPV + ++ I+ ++ ++ + KP VPV
Sbjct: 86 EAGRVCVNGKPAGPDTKVKNGDVISHTLHRHEPPVTSQEIGIIHEDDGLIVIDKPAGVPV 145
Query: 163 HPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
H G+Y N+V+ IL++E + P +RLDRL SG++ +A+ A++ ++++ V
Sbjct: 146 HSAGRYHYNSVIEILRSERGGGWVPRPCNRLDRLTSGVMFIAKEPKAAEMVARRLKERTV 205
Query: 222 IKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLGDTPL------ 266
K Y+ RV G FP+G V D + +N + G++ L P
Sbjct: 206 HKEYVTRVKGKFPDGVVVCDQPIMQVSPKLGLNRVRATGKTAKTKFRRLAYYPPHDPEPV 265
Query: 267 ---KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K +AA + +SIV C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 266 AANKDRAATPPPAYANEEEGYSIVHCLPLTGRTHQIRVHLQFLGHPITNDPIY 318
>gi|226289283|gb|EEH44795.1| RNA pseudouridylate synthase domain-containing protein
[Paracoccidioides brasiliensis Pb18]
Length = 525
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 167/318 (52%), Gaps = 46/318 (14%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P + Y G R V PY+F + ++ K RW G+ ++D+F EF+ RP +YY A+
Sbjct: 26 TPCDP-LPRPYYIEGGLRRVAPYHFTYNTYCKERWRGRGLLDVFGTEFRDRPREYYKKAI 84
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + ++ + V + +++ ISH LHRHEPPV + + ++ ++ D++ + KP VPV
Sbjct: 85 EDGAVCINGKAVTIDTKIQNGDVISHTLHRHEPPVTSQPIGVIHEDNDMIVIDKPAGVPV 144
Query: 163 HPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
HP G+Y N+V+ I++AE H P +P +RLDRL SG++ + ++ A+ +++ +
Sbjct: 145 HPAGRYNYNSVLEIMKAERGHGWVP-YPCNRLDRLTSGVMFVGKHPKGAEQIGEKLRSRT 203
Query: 221 VIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRST---------------AE 256
V K Y+ARV G FP+G + D + +N ++G+ AE
Sbjct: 204 VRKEYVARVKGKFPDGVVLCDQPMLKISPILGLNRARASGKEARTKFRRIAYYPPYEPAE 263
Query: 257 SGDSLGDTPLKGKAACTKFTRISTNGT------------------HSIVLCEPITGRTHQ 298
P A IS + T +SIV C P+TGRTHQ
Sbjct: 264 KSSVSSTEPATPPATLPDEMNISNSSTATPTGVATPVPKSSDEEGYSIVHCLPLTGRTHQ 323
Query: 299 IRVHLQYTGYPIANDMLY 316
IRVHLQY GYPI ND +Y
Sbjct: 324 IRVHLQYLGYPITNDPIY 341
>gi|358332392|dbj|GAA41186.2| RNA pseudouridylate synthase domain-containing protein 2
[Clonorchis sinensis]
Length = 524
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/278 (39%), Positives = 154/278 (55%), Gaps = 15/278 (5%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSA-VKC--GRIQ 108
DY F +G R V PY+F F ++VK RW + I ++ +EF D V +C G ++
Sbjct: 116 DYYFENGLRKVFPYHFMFKAYVKRRWIDRPIHEVLLDEFNFPFPDIIVKKHARCDSGDLR 175
Query: 109 VDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQY 168
V++E + Y ++ S ISH +HRHE PV+ + + ++ D+L + KP S+PVHPCGQY
Sbjct: 176 VNDECISPDYLLRDSDMISHKVHRHEMPVLDSPIDFIHEDDDLLVINKPASIPVHPCGQY 235
Query: 169 RKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIAR 228
N++ IL ++D PL HRLDR+ SGL+I+A+N + +I A +V K YI R
Sbjct: 236 TLNSLTHILARQYDRRPLRFTHRLDRMTSGLMIIAKNYDASLRLATEISAREVKKYYICR 295
Query: 229 VNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK--------GKAACTKFTRI-- 278
V+G FP ++V D T G L GK ACT F R+
Sbjct: 296 VDGHFP--DEVEDSPSTLPQGVIACTQPLGPLCSKMGLHAVVSESSGGKPACTHFKRLLY 353
Query: 279 STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ S+V+C TGRTHQIR+HLQY GYPI +D LY
Sbjct: 354 DPDTNTSLVVCRLFTGRTHQIRIHLQYLGYPITDDPLY 391
>gi|295661807|ref|XP_002791458.1| pseudouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280015|gb|EEH35581.1| RNA pseudouridylate synthase domain-containing protein
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 525
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 167/318 (52%), Gaps = 46/318 (14%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P + Y G R V PY+F + ++ K RW G+ ++D+F EF+ RP +YY A+
Sbjct: 26 TPCDP-LPRPYYIEGGLRRVAPYHFTYNTYCKERWRGRGLLDVFGTEFRDRPREYYKKAI 84
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + ++ + V + +++ ISH LHRHEPPV + + ++ ++ D++ + KP VPV
Sbjct: 85 EDGAVCINGKAVTIDTKIQNGDVISHTLHRHEPPVTSQPIGLIHEDNDMIVIDKPAGVPV 144
Query: 163 HPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
HP G+Y N+V+ I++AE H P +P +RLDRL SG++ + ++ A+ +++ +
Sbjct: 145 HPAGRYNYNSVLEIMKAERGHGWVP-YPCNRLDRLTSGVMFIGKHPRGAEQIGEKLRSRT 203
Query: 221 VIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRST---------------AE 256
V K Y+ARV G FP+G + D + +N ++G+ AE
Sbjct: 204 VRKEYVARVKGKFPDGVVLCDQPMLKISPILGLNRARASGKEARTKFRRIAYYPPYEPAE 263
Query: 257 SGDSLGDTPLKGKAACTKFTRISTNGT------------------HSIVLCEPITGRTHQ 298
P A IS + T +SIV C P+TGRTHQ
Sbjct: 264 KSSVSSAEPATPPATLPNEMNISNSSTATPTGVATPVPKSSDEEGYSIVHCLPLTGRTHQ 323
Query: 299 IRVHLQYTGYPIANDMLY 316
IRVHLQY GYPI ND +Y
Sbjct: 324 IRVHLQYLGYPITNDPIY 341
>gi|342888941|gb|EGU88152.1| hypothetical protein FOXB_01290 [Fusarium oxysporum Fo5176]
Length = 514
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 166/297 (55%), Gaps = 23/297 (7%)
Query: 43 TPANPPVKEDYIFR-DGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSA 101
TP P Y F DG R + PY+F + +H K RW + +++++ EF+ RP +YY +
Sbjct: 82 TPVGDPWPRPYHFEGDGLRRIVPYHFTYNTHCKERWRNRPLLEIYESEFRDRPLEYYRQS 141
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
+ G I V+ V Y +++ ISH LHRHEPPV V I+ ++ D++ + KP VP
Sbjct: 142 MIRGTIFVNGRRVGPDYILRNGDLISHTLHRHEPPVTEDPVQIIHEDEDMIVINKPAGVP 201
Query: 162 VHPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
VHP G+Y N+VV I++++ A L + +RLDRL SG++ +A+N + A+ +I+
Sbjct: 202 VHPAGRYNFNSVVEIMKSDRGPAFLPYLCNRLDRLTSGIMFIAKNPTAAEALGIKIKDRT 261
Query: 221 VIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRST-----------AESGDS 260
V K YIARV G FP+GE V D + +N + G++ AE +
Sbjct: 262 VRKEYIARVMGEFPDGEVVCDQPILQISPKLGLNRVRANGKTARTVFKKLAYYPAEGEND 321
Query: 261 LGDTPLKGKAACTKFTRISTNGT-HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ + P + + R N +SIV C P+TGRTHQ+RVHLQ+ G+PI ND +Y
Sbjct: 322 VNERPKTPEQVQEEKLRPWVNKKGYSIVRCLPVTGRTHQLRVHLQHLGHPIQNDPIY 378
>gi|119175237|ref|XP_001239884.1| pseudouridine synthase [Coccidioides immitis RS]
gi|320037744|gb|EFW19681.1| DRAP deaminase [Coccidioides posadasii str. Silveira]
gi|392870076|gb|EAS28633.2| RluA family pseudouridine synthase [Coccidioides immitis RS]
Length = 531
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 174/336 (51%), Gaps = 47/336 (13%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P Y F G R V PY++ + ++ K RW G+ ++D+F EF+ RP +YY +A+
Sbjct: 23 TPCDP-WPRPYYFEKGFRRVAPYHYTYNTYCKERWRGRGLLDIFTTEFRDRPAEYYRAAI 81
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + ++ + V VK+ +SH LHRHEPPV + + ++ ++ +++ + KP VPV
Sbjct: 82 ESGHVTINGKPGGVDSKVKNGDVVSHTLHRHEPPVTSLPIGVIHEDDEMIVIDKPAGVPV 141
Query: 163 HPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
HP G+Y N+++ I++AE H PL P +RLDRL SG++ + ++ A+ + A
Sbjct: 142 HPAGRYNYNSIIEIMRAERGHGFNPL-PCNRLDRLTSGVMFIGKDPKAAERISHGLRART 200
Query: 221 VIKRYIARVNGVFPEGEQVVD---------VNIN------------------YNASAGRS 253
+ K YIARV G FP+G + D + +N Y A+A +
Sbjct: 201 MQKEYIARVKGKFPDGIILCDQPMLKISHQLGLNRVRASGKEAKSKFRRLAYYPATAVKK 260
Query: 254 TAESGDS--------LGDTPL----KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
+ S D D PL GKA + + +SIV C P+TGRTHQ+RV
Sbjct: 261 ASSSEDDPATPPATLADDVPLDFGNNGKATISP----PEDEGYSIVHCLPLTGRTHQLRV 316
Query: 302 HLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSH 337
HLQ+ G+PI ND +Y V R AD +
Sbjct: 317 HLQFLGHPITNDPIYSNRRVFGRNLGKADNTGEHDQ 352
>gi|303314793|ref|XP_003067405.1| pseudouridine synthase [Coccidioides posadasii C735 delta SOWgp]
gi|240107073|gb|EER25260.1| ribosomal large subunit pseudouridine synthase D, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 531
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 174/336 (51%), Gaps = 47/336 (13%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P Y F G R V PY++ + ++ K RW G+ ++D+F EF+ RP +YY +A+
Sbjct: 23 TPCDP-WPRPYYFEKGFRRVAPYHYTYNTYCKERWRGRGLLDIFTTEFRDRPAEYYRAAI 81
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + ++ + V VK+ +SH LHRHEPPV + + ++ ++ +++ + KP VPV
Sbjct: 82 ESGHVTINGKPGGVDSKVKNGDVVSHTLHRHEPPVTSLPIGVIHEDDEMIVIDKPAGVPV 141
Query: 163 HPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
HP G+Y N+++ I++AE H PL P +RLDRL SG++ + ++ A+ + A
Sbjct: 142 HPAGRYNYNSIIEIMRAERGHGFNPL-PCNRLDRLTSGVMFIGKDPKAAERISHGLRART 200
Query: 221 VIKRYIARVNGVFPEGEQVVD---------VNIN------------------YNASAGRS 253
+ K YIARV G FP+G + D + +N Y A+A +
Sbjct: 201 MQKEYIARVKGKFPDGIILCDQPMLKISHQLGLNRVRASGKEAKSKFRRLAYYPATAVKK 260
Query: 254 TAESGDS--------LGDTPL----KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
+ S D D PL GKA + + +SIV C P+TGRTHQ+RV
Sbjct: 261 ASSSEDDPATPPATLADDVPLDFGNNGKATISP----PEDEGYSIVHCLPLTGRTHQLRV 316
Query: 302 HLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSH 337
HLQ+ G+PI ND +Y V R AD +
Sbjct: 317 HLQFLGHPITNDPIYSNRRVFGRNLGKADNTGEHDQ 352
>gi|378726244|gb|EHY52703.1| pseudouridylate synthase [Exophiala dermatitidis NIH/UT8656]
Length = 559
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/311 (36%), Positives = 163/311 (52%), Gaps = 48/311 (15%)
Query: 48 PVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRI 107
P Y +G R V PY+F + + K RW G+ ++D+FA EF+ R +YY +A++ G I
Sbjct: 33 PFPRPYYIENGLRRVAPYFFTYNTFCKQRWRGRELLDIFAAEFRDRTREYYKNAIETGHI 92
Query: 108 QVD-EEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCG 166
V+ + VK+ ISH LHRHEPPV A + I+ + +++ + KP VPVHP G
Sbjct: 93 AVNGNPCTDIHTVVKNGDVISHTLHRHEPPVTAQPIRIIHETDEMIVIDKPAGVPVHPAG 152
Query: 167 QYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKR 224
+Y N+VV I++AE + PL P +RLDRL SG++ +A+ +AD +++ V K
Sbjct: 153 RYNYNSVVEIMKAERNYTFKPL-PCNRLDRLTSGVMFIAKTGREADKLSEELRGRTVRKE 211
Query: 225 YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL--------KGKAACTKFT 276
Y+ARV G FP+GE + + G L +P+ GK+A T F
Sbjct: 212 YVARVKGRFPDGE-----GWDGDPMRGGVVKCEESILSISPILGLNRARASGKSAKTLFR 266
Query: 277 RI------STNGT-------------------------HSIVLCEPITGRTHQIRVHLQY 305
R+ + GT +SIV C P+TGRTHQIRVHLQ+
Sbjct: 267 RLAYYPHKTEGGTETGNVQSDANVAQPAPAIPGTEEEGYSIVHCLPLTGRTHQIRVHLQF 326
Query: 306 TGYPIANDMLY 316
G+PI ND +Y
Sbjct: 327 LGHPITNDPIY 337
>gi|363751254|ref|XP_003645844.1| hypothetical protein Ecym_3555 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889478|gb|AET39027.1| Hypothetical protein Ecym_3555 [Eremothecium cymbalariae
DBVPG#7215]
Length = 614
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/281 (38%), Positives = 155/281 (55%), Gaps = 22/281 (7%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R V PY F + + K RW + + D+F +EF+ R YY + G + +++ +
Sbjct: 105 RIVLPYNFTYKTFCKLRWRDRKLFDIFVDEFRDREKSYYRKVITQGAVLLNDIPSTMDSI 164
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
V++ I+H HRHEPPV + + + + D+L + KP +PVHP G+YR NT+ IL+
Sbjct: 165 VRNGDLITHNTHRHEPPVTSRPIKTVFENDDILVIDKPSGIPVHPTGRYRFNTITKILEN 224
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFP----- 234
+ + P +RLDRL SGL+ LA+ AD+ Q++A +V K Y+ARV G FP
Sbjct: 225 QLGYT-VHPCNRLDRLTSGLMFLAKTPKGADIMGDQLKAREVTKEYVARVVGEFPVEPIT 283
Query: 235 --EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPI 292
+ + ++ + N + E G K A T+F RIS +G SIV C+P
Sbjct: 284 VSQPLKTIEPKLGLNKTC--DINEEG---------AKEAKTRFRRISFDGETSIVKCQPY 332
Query: 293 TGRTHQIRVHLQYTGYPIANDMLYLCEHV---THREGMSAD 330
TGRTHQIRVHLQY GYPIAND +Y H+ T +G AD
Sbjct: 333 TGRTHQIRVHLQYLGYPIANDPIYSNPHIWGPTLGKGCEAD 373
>gi|388854139|emb|CCF52289.1| related to DRAP deaminase RIB2 [Ustilago hordei]
Length = 1151
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 148/263 (56%), Gaps = 12/263 (4%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G R PY++EF ++ K RW G+ ++++ EF+ R +YYV A+ G V+ +
Sbjct: 23 GLRKTTPYWYEFQTYSKLRWFGRELIEIMTTEFRDRTKEYYVWAIHKGICTVNGRKAEIH 82
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQK--EPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+ KI + +HRHEPPV + I+ + E +L + KP S+PVH G+Y ++T+ G
Sbjct: 83 QIIGDGDKICNSVHRHEPPVTDEPIKIIHRDDEEGILVIVKPGSIPVHAAGRYLRHTLTG 142
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
+L++EH + ++ +RLDRL SG+++ + A Q AG+V K Y+ RV G FPE
Sbjct: 143 LLKSEHGIEMVYTTNRLDRLTSGIMVCSTKKETASRLGAQFAAGQVSKAYVCRVRGQFPE 202
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPIT 293
GE V I T + + KGK T F R+S + + S++ C PIT
Sbjct: 203 GEIVCKEPI--------LTIDRQSGVNIVHPKGKYCETIFVRLSYDPSTYSSVIFCRPIT 254
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GRTHQIRVH+QY G+PI ND +Y
Sbjct: 255 GRTHQIRVHVQYLGHPICNDPIY 277
>gi|149237721|ref|XP_001524737.1| DRAP deaminase [Lodderomyces elongisporus NRRL YB-4239]
gi|146451334|gb|EDK45590.1| DRAP deaminase [Lodderomyces elongisporus NRRL YB-4239]
Length = 622
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 156/270 (57%), Gaps = 18/270 (6%)
Query: 53 YIFRDGR-RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
YI DGR R V PYYF ++++ K RW + ++D+F EF+ R + Y A++ G + ++
Sbjct: 100 YII-DGRLRKVLPYYFTYLTYCKLRWRDRNLLDVFLSEFRDRTPEAYKKAIESGMVCINS 158
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
+ +S V++ ISH R E V + ++ I+ ++ D+L + KP +P HP G+YR N
Sbjct: 159 KPADLSTIVRNGDLISHRGFRREGHVSSKEIKIVYQDDDLLVIDKPSGIPAHPSGRYRYN 218
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
+V ILQ E + L P +RLDRL SGL+ L + A + QI+ V K YIARV G
Sbjct: 219 SVTKILQHEMGIV-LHPCNRLDRLTSGLMFLGKTAKGSTKLMTQIKDRNVSKEYIARVKG 277
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN--GTHSI 286
FP+ VD + +N R T D +KGK A T+F RIS + S+
Sbjct: 278 KFPKESITVDQPLLTLN-----PRLTLNVVDF-----VKGKEASTEFKRISYDPKTNTSV 327
Query: 287 VLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ C P+TGRTHQIRVHLQY GYPIAND +Y
Sbjct: 328 IKCHPLTGRTHQIRVHLQYIGYPIANDPIY 357
>gi|358374905|dbj|GAA91493.1| DRAP deaminase [Aspergillus kawachii IFO 4308]
Length = 518
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 161/295 (54%), Gaps = 22/295 (7%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P Y G R VKPY++ + + K RW G+ +VD+F EF+ RP +YY A+
Sbjct: 27 TPCDP-WPAPYYLEGGLRRVKPYHYTYNTFCKERWRGRELVDIFLSEFRDRPAEYYRKAL 85
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + V+ + VK+ Q ISH LHRHEPPV ++ I+ ++ D++ + KP VPV
Sbjct: 86 QDGLVAVNGTPAGPNTVVKNGQIISHTLHRHEPPVTGKEIGIIHEDDDLIVIDKPAGVPV 145
Query: 163 HPCGQYRKNTVVGILQAE-HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
H G+Y N+V+ I++++ H P +RLDRL SG++ L + A+ +++A +
Sbjct: 146 HSAGRYHYNSVLEIMRSQRHPEWVPRPCNRLDRLTSGVMFLGKTPKAAENMTGKLKARTL 205
Query: 222 IKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLGDTP------- 265
K Y+ARV G FP+G V D V +N + G+ L P
Sbjct: 206 QKEYVARVKGKFPDGVIVCDQPIMSVSPKVGLNRVRATGKEAKTKFRRLAYVPPQAPEPQ 265
Query: 266 ----LKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+G+ A + + +SIV C P+TGRTHQIRVHLQ+ G+PI+ND +Y
Sbjct: 266 SAPDAEGRVATPPPVYTNEDEGYSIVHCLPLTGRTHQIRVHLQFLGHPISNDPIY 320
>gi|409044241|gb|EKM53723.1| hypothetical protein PHACADRAFT_148496 [Phanerochaete carnosa
HHB-10118-sp]
Length = 489
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 151/263 (57%), Gaps = 12/263 (4%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G R VKPY++ + + K RW G+ I+++ + EF+ R +YY A++ G ++ ++
Sbjct: 24 GLRKVKPYWYNYTTMAKGRWLGREILEIISTEFRDRSMEYYRYALESGVTTINGKVAKPD 83
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQKEP--DVLTVCKPPSVPVHPCGQYRKNTVVG 175
V++ +I + HRHEPPV + V I+ + + + KP S+PVH G+Y K ++V
Sbjct: 84 TIVENGDRIENVAHRHEPPVTSTPVRIVHHDAVRGFIVIDKPGSIPVHAAGRYYKQSLVQ 143
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL+ E + V+RLDRL SGL+IL +A A ++ AG V K YIAR G FPE
Sbjct: 144 ILKTEMGFDNAYTVNRLDRLTSGLMILPLSAQLAHTMAKEFAAGSVKKEYIARCKGEFPE 203
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPIT 293
GE V + + T + L +GK+A T FTR+ + S++ C P+T
Sbjct: 204 GETVCEEPL--------LTVDRQMGLNVVHPEGKSAKTIFTRLHYDAETDSSVLHCRPVT 255
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GR+HQIRVHLQY GYPIAND +Y
Sbjct: 256 GRSHQIRVHLQYLGYPIANDPIY 278
>gi|392580471|gb|EIW73598.1| hypothetical protein TREMEDRAFT_25081 [Tremella mesenterica DSM
1558]
Length = 523
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/261 (39%), Positives = 155/261 (59%), Gaps = 13/261 (4%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +KPY++ + ++ K RW G+ ++++ + EF+ R +YY A++ G +V+ +
Sbjct: 44 RYMKPYWWPYQTYCKQRWIGRQLLEVVSTEFRDRSVEYYRHALQSGVTRVNGQTAYPELV 103
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSIL--QKEPDVLTVCKPPSVPVHPCGQYRKNTVVGIL 177
+++ +I + HRHEPP+ + IL K+ + + KP S+PVH G+Y ++TV+ IL
Sbjct: 104 LRNGDRIDNTTHRHEPPIANQPILILYQDKQRGFIVISKPGSMPVHAAGRYFRHTVLEIL 163
Query: 178 QAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237
Q++ + + V+RLDRL SGL+ILA + A + ++ E G+V K Y+ARV G FPE E
Sbjct: 164 QSDFGIK-AYSVNRLDRLTSGLMILALSGKTASILSKEFEEGRVKKEYVARVKGRFPEEE 222
Query: 238 QVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPITGR 295
VD + T + L GK A T FTR+S + + S+V C PITGR
Sbjct: 223 LTVDQPL--------MTVDRQMGLVIVTPDGKEAKTIFTRMSYDSSRDQSVVHCRPITGR 274
Query: 296 THQIRVHLQYTGYPIANDMLY 316
THQIRVHLQY G+PI ND LY
Sbjct: 275 THQIRVHLQYLGHPIVNDPLY 295
>gi|341877336|gb|EGT33271.1| hypothetical protein CAEBREN_13663 [Caenorhabditis brenneri]
Length = 453
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/321 (34%), Positives = 170/321 (52%), Gaps = 24/321 (7%)
Query: 48 PVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVS------- 100
P+K + DG R++ PY+ + + K RW G+ +V++FA EF +Y S
Sbjct: 59 PMKVPFKIIDGIRHLNPYWACYRTRTKGRWIGRKMVEVFAGEFLSTNRNYAASKLGGATV 118
Query: 101 ------AVKCGRIQVD-EEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLT 153
A K GRI V+ E+M + Y +K+ ++ H+ HRHE PV + I+ + D+L
Sbjct: 119 PMDFKIACKMGRIYVNGEQMTDIDYVMKNGDRVEHWAHRHEHPVRDLPIRIISETDDLLV 178
Query: 154 VCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFR 213
V KPPS+PVH CGQY +TV+G L+ L +HRLDR SG+L+ A+N F+
Sbjct: 179 VEKPPSLPVHTCGQYAIHTVLGQLRVNEGKTGLRVLHRLDRATSGVLLFAKNYETDLEFK 238
Query: 214 QQIEAGKVIKRYIARVNGVFPEGEQVVDVNIN-YNASAGRSTAESGDSLGDTPLKGKAAC 272
++ G+ K Y+ +V+GVFP+ EQ+ + I S G GK A
Sbjct: 239 TTLKQGEWSKEYVCKVDGVFPDEEQICEQPIGPLVISMGIQCVRPD---------GKEAK 289
Query: 273 TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSADRA 332
++F ++ ++GTHS+V TGRTHQIRVH Q+ G+PI D LY +G +A+
Sbjct: 290 SRFRKLWSDGTHSVVQVHIETGRTHQIRVHSQFLGFPIVGDQLYNSTVWGSTKGKNAEYQ 349
Query: 333 AAYSHHSPPPVSSDKSESSSE 353
++ ++ KSE+ E
Sbjct: 350 KSFEELCEDVRNTHKSENWHE 370
>gi|17534965|ref|NP_493778.1| Protein K07E8.7 [Caenorhabditis elegans]
gi|3915497|sp|O16686.1|YK27_CAEEL RecName: Full=Uncharacterized protein K07E8.7
gi|373254529|emb|CCD72759.1| Protein K07E8.7 [Caenorhabditis elegans]
Length = 432
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 161/290 (55%), Gaps = 11/290 (3%)
Query: 48 PVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRI 107
P+K + DG R++ PY+ + + K RW G+ +V++F+ EF +Y A K GRI
Sbjct: 53 PMKVPFKIVDGVRHLAPYWACYRTRTKGRWIGRKMVEVFSGEFLSTNRNYAKIACKMGRI 112
Query: 108 QVD-EEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCG 166
V+ E+M V Y +++ ++ H+ HRHE P+ + ++ + D+ V KPPS+PVH CG
Sbjct: 113 YVNGEQMTDVDYVMRNGDRVEHWAHRHEHPIRDLPIRVISETDDLFVVEKPPSLPVHTCG 172
Query: 167 QYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYI 226
QY +TV+G L+ L +HRLDR SG+L+ A+N F+ ++ G+ K YI
Sbjct: 173 QYAIHTVLGQLRVNEGRTGLRVLHRLDRATSGVLLFAKNYETDLEFKTTLKQGEWSKEYI 232
Query: 227 ARVNGVFPEGEQVVDVNIN-YNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHS 285
+V+GVFP+ EQV + I S G GK A ++F ++ ++GT S
Sbjct: 233 CKVDGVFPDEEQVCEQPIGPLVISMGIQCVRPD---------GKDAKSRFRKLWSDGTQS 283
Query: 286 IVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAY 335
+V TGRTHQIRVH Q+ G+PIA D +Y +G +AD ++
Sbjct: 284 VVQVHIETGRTHQIRVHSQFLGHPIAGDQIYNSAVWGPTKGKNADYQKSF 333
>gi|403161222|ref|XP_003321597.2| hypothetical protein PGTG_03134 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171174|gb|EFP77178.2| hypothetical protein PGTG_03134 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 545
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 157/272 (57%), Gaps = 13/272 (4%)
Query: 50 KEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV 109
K + F +G R V+PY FEF ++ K RW G++++D+F+ +F+ R +YY AV G I++
Sbjct: 70 KPTWFFENGLRKVRPYLFEFSTYAKERWRGRSVIDVFSTDFRDRSPEYYAHAVASGVIKI 129
Query: 110 DEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQK--EPDVLTVCKPPSVPVHPCGQ 167
+ + + +++ +I++ LHRHEPPV V IL + E +L V KP S+PVHP G+
Sbjct: 130 NGKNIKKDVIIRNGDRITNTLHRHEPPVAGDPVRILHRDDEKGLLVVEKPGSMPVHPTGR 189
Query: 168 YRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEA-GKVIKRYI 226
Y NT++ IL+ ++DL + +RLDRL SG+++ A + + G V K YI
Sbjct: 190 YNYNTLLSILRFDYDLPLVHTSNRLDRLTSGVMVCALTVEASRGLSKFFSTEGAVKKEYI 249
Query: 227 ARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN--GTH 284
AR G FP+ E + + T + L +GK A T F ++S +
Sbjct: 250 ARCRGNFPDDEVTCEEPL--------LTIDRQIGLNVVHPEGKHAKTIFKKLSYDPESDS 301
Query: 285 SIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
S++ C PITGR+HQ+RVHLQ+ G+PI ND +Y
Sbjct: 302 SVLHCRPITGRSHQLRVHLQFLGFPILNDTIY 333
>gi|115387957|ref|XP_001211484.1| pseudouridine synthase [Aspergillus terreus NIH2624]
gi|114195568|gb|EAU37268.1| DRAP deaminase [Aspergillus terreus NIH2624]
Length = 507
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 160/303 (52%), Gaps = 48/303 (15%)
Query: 48 PVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRI 107
P+ E Y F G R VKPYY+E+ ++ K RW G+ +VD+F EF+ RP +YY A R
Sbjct: 16 PLPEPYYFEHGLRRVKPYYWEYHTYCKQRWRGRELVDIFTSEFRDRPEEYYRKA----RS 71
Query: 108 QVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQ 167
+ + +K+ +K+ H LHRHEPPV + I+ ++ D+L + KP VPVH G+
Sbjct: 72 KSTAKSPAPHRILKNGEKLQHTLHRHEPPVTGLPIGIIHEDDDLLVIDKPAGVPVHAAGR 131
Query: 168 YRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYI 226
Y N+++ IL+ E+ + + P +RLDRL SG++ + + A A+ +++ V K YI
Sbjct: 132 YHYNSIIEILRNENGVEWMPRPCNRLDRLTSGVMFIGKTAKGAEKMCAKLQQRTVQKEYI 191
Query: 227 ARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK--GKAACTKFTRI------ 278
ARV G FP+G + D I + LG ++ GK A TKF RI
Sbjct: 192 ARVKGRFPDGVVICDQPI----------MQVSPKLGLNRVRATGKDAKTKFRRIAYYPPA 241
Query: 279 -------------------------STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
+ + +SIV C P+TGRTHQIRVHLQ+ G+PI ND
Sbjct: 242 APAAGEEDSQGEGEERAATPPPALANEDEGYSIVHCLPLTGRTHQIRVHLQFLGHPITND 301
Query: 314 MLY 316
+Y
Sbjct: 302 PIY 304
>gi|393239475|gb|EJD47007.1| pseudouridine synthase [Auricularia delicata TFB-10046 SS5]
Length = 584
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 153/263 (58%), Gaps = 12/263 (4%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G + +KPY+ + + K RW G+ +++L + EF+ R +YY A+K G ++ +
Sbjct: 44 GLKKIKPYWHPYRTMAKERWLGREMLELISSEFRDRSVEYYRYALKAGVTTINGKPARED 103
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQ--KEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
V++ +I + +HRHEPPV + V IL +E + V KP S+PVH G+Y KN++V
Sbjct: 104 TIVRNGDRIENIVHRHEPPVTSTPVRILHVDEERQFIVVDKPGSIPVHATGRYFKNSLVE 163
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL+ EH +A + V+RLDRL SGL+I+A + ++A + + + K YIAR G FPE
Sbjct: 164 ILKREHGIAKPYTVNRLDRLTSGLMIIATSPARARILCDEFLNKAIRKEYIARCRGCFPE 223
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI--STNGTHSIVLCEPIT 293
E V D + T + L +GK A T F R+ N S++ C+PIT
Sbjct: 224 EEVVCDQPM--------LTVDRQMGLNIVHPEGKPARTIFRRLFYDANTDSSVLQCQPIT 275
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GR+HQIRVHLQY G+P+AND +Y
Sbjct: 276 GRSHQIRVHLQYLGHPVANDPVY 298
>gi|403217981|emb|CCK72473.1| hypothetical protein KNAG_0K01080 [Kazachstania naganishii CBS
8797]
Length = 359
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/346 (32%), Positives = 184/346 (53%), Gaps = 14/346 (4%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R V PYY + +H K RW G+ +VD+F EF+ + ++Y + + G + V+ +
Sbjct: 14 RKVAPYYQVYRTHCKERWRGRLLVDVFTSEFRDQSIEHYKALITSGGVLVNGVPSISTTK 73
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ I H +HRHEP V A ++++ ++ D++ + KP +PVHP G+Y+ NTV IL+
Sbjct: 74 IQNGDVIEHKVHRHEPAVSAEPIAVIHEDDDIVVIDKPSGIPVHPTGRYKYNTVTEILKR 133
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
E L ++P +RLD+ SG++ILA+N + A L Q ++ + K Y+A+V G FP G
Sbjct: 134 EMGLV-VYPCNRLDKPTSGVMILAKNKTTAKLLSQSLQTHEFQKEYLAKVRGRFPSGTTT 192
Query: 240 VDVNINYNASAGRSTAESGD-SLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
V +NY S R + +G S D K + SIVLC P+TGRTHQ
Sbjct: 193 V---VNYMKSIDRKVSLNGVCSKSDKEAKWSKTVFQLVSYDRRTDTSIVLCFPLTGRTHQ 249
Query: 299 IRVHLQYTGYPIANDMLYLCEHVT--HREGMSAD-RAAAYSHHSPPPVSSD-----KSES 350
IRVHL+ +PIAND +Y E V G D A A P S + + ++
Sbjct: 250 IRVHLRTLNHPIANDPIYSNEQVWGGTLAGTGTDYDAVARKLRQLDPSSLNLGDLQRDQT 309
Query: 351 SSEDFSIDPMCTNC-PNLAPKGKRLLSSNSLEDLCYGHMRQYQTSL 395
ED S C+ C +++P + + ++L+ + +R Y+T++
Sbjct: 310 PFEDPSSASNCSLCETDISPPQQDQIWLHALQYTAHDGLRSYRTAM 355
>gi|261200229|ref|XP_002626515.1| pseudouridine synthase [Ajellomyces dermatitidis SLH14081]
gi|239593587|gb|EEQ76168.1| DRAP deaminase [Ajellomyces dermatitidis SLH14081]
gi|239607533|gb|EEQ84520.1| DRAP deaminase [Ajellomyces dermatitidis ER-3]
gi|327352524|gb|EGE81381.1| DRAP deaminase [Ajellomyces dermatitidis ATCC 18188]
Length = 549
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 169/317 (53%), Gaps = 44/317 (13%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P + Y G R V PY++ + + K RW G+ ++D+F EF+ RP +YY A+
Sbjct: 27 TPCDP-LPRPYYIEGGLRRVAPYHYTYNTFCKERWRGRGLLDVFGAEFRDRPREYYQKAI 85
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + ++ + V + +++ ISH LHRHEPPV + + I+ ++ D++ + KP VPV
Sbjct: 86 EDGAVCINGKAVSIDTKIQNGDVISHTLHRHEPPVTSQPIGIIHEDNDMIVIDKPAGVPV 145
Query: 163 HPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
HP G+Y N+V+ I++AE + +P +RLDRL SG++ + ++ A+ +++ + V
Sbjct: 146 HPAGRYNYNSVLEIMKAERGNGWVPYPCNRLDRLTSGVMFIGKHPKGAEQIGEKLRSRTV 205
Query: 222 IKRYIARVNGVFPEGEQVVD---------VNINYNASAGR-----------------STA 255
K Y+ARV G FP+G + D + +N ++G+ +
Sbjct: 206 RKEYVARVKGKFPDGVVLCDQPMLKISPILGLNRARASGKEARTKFRRIAYYPPHKQAEK 265
Query: 256 ESGDSLG---------------DTPLKGKAACTKFTRISTNGT-HSIVLCEPITGRTHQI 299
SG S G D+P T +S + +SIV C P+TGRTHQ+
Sbjct: 266 TSGSSTGPATPPATLPDQMNISDSPTDTPTGATTPIPMSLDEEGYSIVHCLPLTGRTHQL 325
Query: 300 RVHLQYTGYPIANDMLY 316
RVHLQY G+PI ND +Y
Sbjct: 326 RVHLQYLGHPITNDPIY 342
>gi|390597016|gb|EIN06416.1| pseudouridine synthase [Punctularia strigosozonata HHB-11173 SS5]
Length = 533
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/268 (36%), Positives = 159/268 (59%), Gaps = 12/268 (4%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G + + PY++ + + K RW G+ I+++ + EF+ R +YY A++ G ++ ++
Sbjct: 31 GLKKIPPYWYPYTTMAKGRWLGREILEVVSTEFRDRSMEYYRYALESGVTTINGKVAKPD 90
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQK--EPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+++ +I + +HRHEPPV + V IL E + + + KP S+PVHP G+Y KN+++
Sbjct: 91 TIIQNGDRIENVVHRHEPPVTSSPVKILHHDVEREFIVIDKPGSIPVHPSGRYYKNSLIE 150
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL+ + ++ V+RLDRL SGL+I+ ++S+A + + GKV K Y+ARV G FP
Sbjct: 151 ILKDDFGYKDVYTVNRLDRLTSGLMIVPLSSSRARMVSDEFIEGKVQKEYVARVKGHFPP 210
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTR-ISTNGTH-SIVLCEPIT 293
E + + + T + L +GK A T FTR + GT S+V C P+T
Sbjct: 211 EEVICEEPL--------LTVDRQMGLNIVHPEGKPAKTIFTRMLYDKGTDTSVVHCRPLT 262
Query: 294 GRTHQIRVHLQYTGYPIANDMLYLCEHV 321
GR+HQIRVHLQY G+PIAND++Y E +
Sbjct: 263 GRSHQIRVHLQYLGHPIANDVIYSEERI 290
>gi|358059056|dbj|GAA94995.1| hypothetical protein E5Q_01650 [Mixia osmundae IAM 14324]
Length = 466
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 163/277 (58%), Gaps = 23/277 (8%)
Query: 50 KEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV 109
+ DY DG R V PY + F ++VK RW G+ I+++F+ EF+ R YY A++ G ++V
Sbjct: 12 RPDYREEDGLRKVVPYAYTFQTYVKQRWKGRKILEIFSTEFRDRSPAYYAFALEQGVVRV 71
Query: 110 DEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEP--DVLTVCKPPSVPVHPCGQ 167
++ ++ + + Q IS+ +HRHEPPV A + IL ++ +L V KP S+PVHP G+
Sbjct: 72 NDGVIGPDFVLVDGQLISNVIHRHEPPVAAGPIQILARDDVRGILVVVKPGSMPVHPTGR 131
Query: 168 YRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARN----ASKADLFRQQIEAGKVIK 223
Y NT++ IL+ EH ++ +RLDRL SG+++ + +LF + G V K
Sbjct: 132 YNHNTLLHILKYEHGFEGVYTNNRLDRLTSGVMVCGMTPKAMSRLGELFGTE---GAVRK 188
Query: 224 RYIARVNGVFPEGEQVVDVN--INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN 281
Y+ RV G FPE EQV+ + + G S +G+ + T F R+S +
Sbjct: 189 YYVCRVVGCFPE-EQVISEEPLLCIDRQIGISVVHP---------EGRPSKTIFQRLSYH 238
Query: 282 -GTHSIVL-CEPITGRTHQIRVHLQYTGYPIANDMLY 316
GT + VL C+P+TGR+HQIRVHLQY G+PIAND +Y
Sbjct: 239 AGTDTSVLHCQPVTGRSHQIRVHLQYMGFPIANDPVY 275
>gi|328870665|gb|EGG19038.1| hypothetical protein DFA_02281 [Dictyostelium fasciculatum]
Length = 579
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 148/271 (54%), Gaps = 13/271 (4%)
Query: 50 KEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV 109
K+D + R V PY +EF+S + RW G I+D+F +E++ P + Y + G+I V
Sbjct: 124 KDDDQMGEVLRGVVPYDYEFVSRARERWVGMNIIDMFMKEYRPHPRELYEIKIAMGKILV 183
Query: 110 DEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYR 169
++ Y +KS H +HRHE V+A + +++ + D L V KPPS+PVHP G YR
Sbjct: 184 NDLPTTADYVIKSGDTFKHIVHRHEIDVLALEPTLIAETLDYLVVDKPPSIPVHPAGPYR 243
Query: 170 KNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARV 229
N++ +L + L HRLDRL SG+++LA+N++ + + + G + K Y+A+V
Sbjct: 244 HNSLTFLLARQFGYTNLLACHRLDRLTSGVVVLAKNSTASGRLGKVFKKGDIDKIYLAKV 303
Query: 230 NGVFPEGEQVVDVN--INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN--GTHS 285
G+FP E+ + + N G LG +GK + T F N S
Sbjct: 304 KGMFPYLEETMVAKPIMVLNEITG---------LGVEDARGKPSTTFFKLAHYNKESDTS 354
Query: 286 IVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
I+ C PITGR HQIR+HL+ G+PI ND LY
Sbjct: 355 IIWCRPITGRGHQIRIHLKSIGFPITNDPLY 385
>gi|225556035|gb|EEH04325.1| DRAP deaminase [Ajellomyces capsulatus G186AR]
Length = 545
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 167/317 (52%), Gaps = 44/317 (13%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P + Y G R V PY++ + ++ K RW G+ ++D+F EF+ RP +YY A+
Sbjct: 27 TPCDP-LPRPYYIEGGLRRVAPYHYTYNTYCKERWRGRGLLDVFGTEFRDRPKEYYQKAI 85
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + ++ + V + +++ ISH LHRHEPPV + +SI+ ++ D++ + KP VPV
Sbjct: 86 EDGAVCINGKAVSIDTKIQNGDVISHTLHRHEPPVTSQPISIIHEDDDMIVIDKPAGVPV 145
Query: 163 HPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
HP G+Y N+++ I++AE + +P +RLDRL SG++ + ++ A+ +++ + V
Sbjct: 146 HPAGRYNYNSILEIMKAERGNGWVPYPCNRLDRLTSGVMFIGKHPKGAEQIGEKLRSRTV 205
Query: 222 IKRYIARVNGVFPEGEQVVD---------VNINYNASAGRST---------------AES 257
K Y+ARV G FP+G + D + +N ++G+ A
Sbjct: 206 RKEYVARVKGKFPDGVVLCDQPMLKISPILGLNRARASGKEARTKFRRIAYYPPHKQAGK 265
Query: 258 GDSLGDTPLKGKAACTKFTRISTNGT------------------HSIVLCEPITGRTHQI 299
L P A IS + T +SIV C P+TGRTHQ+
Sbjct: 266 KQGLSAGPATPPATLPDQMNISDSQTDTPTGAAIPVPMSPDEEGYSIVHCLPLTGRTHQL 325
Query: 300 RVHLQYTGYPIANDMLY 316
RVHLQY G+PI ND +Y
Sbjct: 326 RVHLQYLGHPITNDPIY 342
>gi|449550480|gb|EMD41444.1| hypothetical protein CERSUDRAFT_110021 [Ceriporiopsis subvermispora
B]
Length = 579
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 153/263 (58%), Gaps = 12/263 (4%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G + + PY++ + + K RW G+ I+++ + EF+ R +YY A++ G ++ ++
Sbjct: 24 GLKKIPPYWYPYTTMAKGRWLGREILEVVSTEFRDRSMEYYRYALESGVTTINGKVAKPD 83
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQ--KEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
V++ +I + +HRHEPPV A V I+ KE + + V KP S+PVH G+Y +N+++
Sbjct: 84 TIVRNGDRIENIVHRHEPPVTATPVKIIHHDKEREFIVVNKPGSIPVHASGRYFRNSLIE 143
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL+ + + P++RLDRL SGL+I+ + ++A ++ AG V K Y+AR G FPE
Sbjct: 144 ILKNDLGFDKVHPINRLDRLTSGLMIMPLSGTRAAEISKEFLAGTVRKEYVARCKGEFPE 203
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI--STNGTHSIVLCEPIT 293
E V + + T + L +GK A T F R+ N S+V C P+T
Sbjct: 204 EEVVCEQPL--------LTIDRQMGLNVVHPEGKPAKTIFKRLHYDANTDTSVVHCRPLT 255
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GR+HQIRVHLQY GYPIAND +Y
Sbjct: 256 GRSHQIRVHLQYLGYPIANDPVY 278
>gi|270007545|gb|EFA03993.1| hypothetical protein TcasGA2_TC014142 [Tribolium castaneum]
Length = 552
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 160/331 (48%), Gaps = 79/331 (23%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV--- 109
Y +G R V PYYF F + K RW G+ I+D+FA EF+ P + Y ++ G + V
Sbjct: 39 YYIENGLRKVYPYYFTFTTFTKGRWVGERILDVFAREFRAHPAEEYERCIQAGTLTVNYD 98
Query: 110 -----------------------------------DEEMV----PVSYTVKS-------- 122
DE++V P S +KS
Sbjct: 99 KVPIDYKLKHNDLLANVVHRHEVPVTSQPITIVHMDEDIVVVNKPASIPIKSFHVHGPIL 158
Query: 123 ------------SQKISHFLH-RHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYR 169
+ + +H RHE PV+A + ++ + D++ + KP S+PVHPCG+YR
Sbjct: 159 DRTNIERDAGVPHESLMLLVHYRHETPVLANPIKLIHVDEDLVVLDKPCSLPVHPCGRYR 218
Query: 170 KNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARV 229
NTVV IL E++L L +HRLDRL SGLL+ R+ KA QI V K Y+ RV
Sbjct: 219 HNTVVFILAKEYNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEHQIRNRLVQKEYVCRV 278
Query: 230 NGVFP----EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHS 285
G FP E ++ ++V ++Y + + KGK T F ++ NG S
Sbjct: 279 EGEFPDEIIECKEPIEV-VSYKIGVCKVSP-----------KGKDCNTIFQKLGFNGKTS 326
Query: 286 IVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
IVLC+P TGR HQIRVHLQY GYP+ ND LY
Sbjct: 327 IVLCKPKTGRMHQIRVHLQYLGYPVVNDPLY 357
>gi|302892903|ref|XP_003045333.1| pseudouridine synthase [Nectria haematococca mpVI 77-13-4]
gi|256726258|gb|EEU39620.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 525
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 112/315 (35%), Positives = 162/315 (51%), Gaps = 47/315 (14%)
Query: 43 TPANPPVKEDYIFR-DGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSA 101
TP P Y F DG R V PY+F + +H K RW + +++++ EF+ RP YY +
Sbjct: 91 TPVGDPWPRPYHFEGDGLRRVAPYHFTYNTHCKERWRNRPLLEIYEAEFRDRPIQYYYDS 150
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
+ G I V+ V Y +++ ISH LHRHEPPV + ++ ++ D++ + KP VP
Sbjct: 151 MVRGTIFVNGRRVGPDYVLRNGDLISHTLHRHEPPVTEDPLQVIHEDEDMIVINKPAGVP 210
Query: 162 VHPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
VHP G+Y N+V+ I+++E L + +RLDRL SG++ +A+N A+ +I+
Sbjct: 211 VHPAGRYNYNSVIEIMKSERGQGFLPYLCNRLDRLTSGIMFIAKNPPAAEALGIKIKQRT 270
Query: 221 VIKRYIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTR 277
V K YIARV G FP+GE V D + I+ R A GK A T F R
Sbjct: 271 VRKEYIARVMGKFPDGEVVCDQPILQISPKLGLNRVRA-----------NGKTARTVFKR 319
Query: 278 IS---------TNGT----------------------HSIVLCEPITGRTHQIRVHLQYT 306
++ T G +SIV C P+TGRTHQ+RVHLQ+
Sbjct: 320 LAYYPPPDGEETEGDGRPKTPEEELDEKHHPWINKRGYSIVRCLPVTGRTHQLRVHLQHL 379
Query: 307 GYPIANDMLYLCEHV 321
G+PI ND +Y V
Sbjct: 380 GHPIQNDPIYANRRV 394
>gi|408400325|gb|EKJ79407.1| hypothetical protein FPSE_00338 [Fusarium pseudograminearum CS3096]
Length = 515
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 164/297 (55%), Gaps = 23/297 (7%)
Query: 43 TPANPPVKEDYIFR-DGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSA 101
TP P Y F DG R V PY++ + +H K RW + +++++ EF+ RP +YY +
Sbjct: 83 TPVGDPWPRPYHFDGDGLRRVLPYHYTYNTHCKERWRNRPLLEIYESEFRDRPVEYYRQS 142
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
+ G I V+ V Y +++ ISH LHRHEPPV V I+ ++ D++ + KP VP
Sbjct: 143 MIRGSIFVNGRRVGPDYILRNGDLISHTLHRHEPPVTEDPVQIIHEDEDMIVINKPAGVP 202
Query: 162 VHPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
VHP G+Y N+VV I++++ A L + +RLDRL SG++ +A+N A+ +I+
Sbjct: 203 VHPAGRYNFNSVVEIMKSDRGPAFLPYLCNRLDRLTSGIMFIAKNPIAAEALGIKIKDRT 262
Query: 221 VIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRST-----------AESGDS 260
V K YIARV G FP+GE V D + +N + G++ + +
Sbjct: 263 VRKEYIARVMGEFPDGEVVCDQPILQISPKLGLNRVRANGKTARTVFKKLAYYPEDENED 322
Query: 261 LGDTPLKGKAACTKFTRISTNGT-HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ + P + + R N +SIV C P+TGRTHQ+RVHLQ+ G+PI ND +Y
Sbjct: 323 VDERPKTPEQLQDEMHRPWVNKKGYSIVRCLPVTGRTHQLRVHLQHLGHPIQNDPIY 379
>gi|242212896|ref|XP_002472279.1| predicted protein [Postia placenta Mad-698-R]
gi|220728646|gb|EED82536.1| predicted protein [Postia placenta Mad-698-R]
Length = 448
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 155/263 (58%), Gaps = 12/263 (4%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G + + PY++ + + K RW G+ I+++ + EF+ R +YY A++ G ++ ++
Sbjct: 2 GLKKIPPYWYPYTTMAKGRWLGREILEVVSTEFRDRSMEYYRYALESGVTTINGKIAKPD 61
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQ--KEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
V++ +I + +HRHEPPV A V I+ +E + + + KP S+PVH G++ +N++V
Sbjct: 62 TIVQNGDRIENVVHRHEPPVTATPVRIIHHDREREFIIIDKPGSIPVHASGRFFRNSLVE 121
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL+ + ++ ++RLDRL SGL+I+ ++S A+ Q+ AG + K YIAR G FPE
Sbjct: 122 ILKNDFGFKKVYTINRLDRLTSGLMIIPLSSSMANTLTQEFAAGTIRKEYIARCRGQFPE 181
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI--STNGTHSIVLCEPIT 293
E +V + T + L +GK A T F R+ N S+V CEP+T
Sbjct: 182 EELACEVPL--------LTIDRQMGLNVVHPEGKPAKTIFKRMHYDANTDTSVVHCEPLT 233
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GR+HQIRVHLQY G+P+AND +Y
Sbjct: 234 GRSHQIRVHLQYLGHPVANDPIY 256
>gi|240278475|gb|EER41981.1| DRAP deaminase [Ajellomyces capsulatus H143]
Length = 545
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 166/317 (52%), Gaps = 44/317 (13%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P + Y G R V PY++ + ++ K RW G+ ++D+F EF+ RP +YY AV
Sbjct: 27 TPCDP-LPRPYYIEGGLRRVAPYHYTYNTYCKERWRGRGLLDVFGTEFRDRPKEYYQKAV 85
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + ++ + V + +++ ISH LHRHEPPV + + I+ ++ D++ + KP VPV
Sbjct: 86 EDGAVCINGKAVSIDTKIQNGDVISHTLHRHEPPVTSQPIGIIHEDDDMIVIDKPAGVPV 145
Query: 163 HPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
HP G+Y N+++ I++AE + +P +RLDRL SG++ + ++ A+ +++ + V
Sbjct: 146 HPAGRYNYNSILEIMKAERGNGWVPYPCNRLDRLTSGVMFIGKHPKGAEQIGEKLRSRTV 205
Query: 222 IKRYIARVNGVFPEGEQVVD---------VNINYNASAGRST---------------AES 257
K Y+ARV G FP+G + D + +N ++G+ A
Sbjct: 206 RKEYVARVKGKFPDGVVLCDQPMLKISPILGLNRARASGKEARTKFRRIAYYPPHKQAGK 265
Query: 258 GDSLGDTPLKGKAACTKFTRISTNGT------------------HSIVLCEPITGRTHQI 299
L P A IS + T +SIV C P+TGRTHQ+
Sbjct: 266 KQGLSAGPATPPATLPDQMNISDSQTDTPTGAAIPVPMSPDEEGYSIVHCLPLTGRTHQL 325
Query: 300 RVHLQYTGYPIANDMLY 316
RVHLQY G+PI ND +Y
Sbjct: 326 RVHLQYLGHPITNDPIY 342
>gi|154275958|ref|XP_001538824.1| pseudouridine synthase [Ajellomyces capsulatus NAm1]
gi|150413897|gb|EDN09262.1| hypothetical protein HCAG_06429 [Ajellomyces capsulatus NAm1]
Length = 545
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 166/317 (52%), Gaps = 44/317 (13%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P + Y G R V PY++ + ++ K RW G+ ++D+F EF+ RP +YY A+
Sbjct: 27 TPCDP-LPRPYYIEGGLRRVAPYHYTYNTYCKERWRGRGLLDVFGTEFRDRPKEYYQKAI 85
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + ++ + V + +++ ISH LHRHEPPV + + I+ ++ D++ + KP VPV
Sbjct: 86 EDGAVCINGKAVSIDTKIQNGDVISHTLHRHEPPVTSQPIGIIHEDDDMIVIDKPAGVPV 145
Query: 163 HPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
HP G+Y N+++ I++AE + +P +RLDRL SG++ + ++ A+ +++ + V
Sbjct: 146 HPAGRYNYNSILEIMKAERGNGWVPYPCNRLDRLTSGVMFIGKHPKGAEQIGEKLRSRTV 205
Query: 222 IKRYIARVNGVFPEGEQVVD---------VNINYNASAGRST---------------AES 257
K Y+ARV G FP+G + D + +N ++G+ A
Sbjct: 206 RKEYVARVKGKFPDGVVLCDQPMLKISPILGLNRARASGKEARTKFRRIAYYPPHKQAGK 265
Query: 258 GDSLGDTPLKGKAACTKFTRISTNGT------------------HSIVLCEPITGRTHQI 299
L P A IS + T +SIV C P+TGRTHQ+
Sbjct: 266 KQGLSAGPATPPATLPDQMNISDSQTDTPIGAAIPVPMSPDEEGYSIVHCLPLTGRTHQL 325
Query: 300 RVHLQYTGYPIANDMLY 316
RVHLQY G+PI ND +Y
Sbjct: 326 RVHLQYLGHPITNDPIY 342
>gi|46111497|ref|XP_382806.1| hypothetical protein FG02630.1 [Gibberella zeae PH-1]
Length = 512
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 164/297 (55%), Gaps = 23/297 (7%)
Query: 43 TPANPPVKEDYIFR-DGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSA 101
TP P Y F DG R V PY++ + +H K RW + +++++ EF+ RP +YY +
Sbjct: 80 TPVGDPWPRPYHFDGDGLRRVLPYHYTYNTHCKERWRNRPLLEIYESEFRDRPVEYYRQS 139
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
+ G I V+ V Y +++ ISH LHRHEPPV V I+ ++ D++ + KP VP
Sbjct: 140 MIRGSIFVNGRRVGPDYILRNGDLISHTLHRHEPPVTEDPVQIIHEDEDMIVINKPAGVP 199
Query: 162 VHPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
VHP G+Y N+VV I++++ A L + +RLDRL SG++ +A+N A+ +I+
Sbjct: 200 VHPAGRYNFNSVVEIMKSDRGPAFLPYLCNRLDRLTSGIMFIAKNPVAAEALGIKIKDRT 259
Query: 221 VIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRST-----------AESGDS 260
V K YIARV G FP+GE V D + +N + G++ + +
Sbjct: 260 VRKEYIARVMGEFPDGEVVCDQPILQISPKLGLNRVRANGKTARTVFKKLAYYPEDENED 319
Query: 261 LGDTPLKGKAACTKFTRISTNGT-HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ + P + + R N +SIV C P+TGRTHQ+RVHLQ+ G+PI ND +Y
Sbjct: 320 VDERPKTPEQLQDETHRPWVNKKGYSIVRCLPVTGRTHQLRVHLQHLGHPIQNDPIY 376
>gi|219122503|ref|XP_002181583.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406859|gb|EEC46797.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 271
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/263 (40%), Positives = 145/263 (55%), Gaps = 11/263 (4%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R VKPY + F S+ K RW G+TI+D++ EF P YY +A++ GRI+V E V V+YT
Sbjct: 8 RLVKPYLYTFRSNAKFRWFGRTILDVYVSEFGSYPESYYRTAIQQGRIRVGNEKVDVAYT 67
Query: 120 VKSSQKISHFLHRHEPPV-----MAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV 174
++S+ ++H +HRHEP V A V ++ L V KP ++PVHP G Y N+++
Sbjct: 68 IRSNDVLTHTVHRHEPAVAVSQPQAPFVKVVANSETWLVVDKPGTMPVHPSGAYHLNSLL 127
Query: 175 GILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI-EAGKVIKRYIARVNGVF 233
IL E+ L+P+HRLDRL SGL+IL + A + I E K YIARV G F
Sbjct: 128 PIL--ENTYGKLYPIHRLDRLTSGLVILGKTPEAARQLGKAIKERDSCTKLYIARVRGRF 185
Query: 234 PEGEQVVDVNINYNASAGRSTAESG---DSLGDTPLKGKAACTKFTRISTNGTHSIVLCE 290
P N++ + S E D G +K + S+VLC
Sbjct: 186 PFNCASHVPNLSSHKSYPPRYGEWSVLQDMDGKKDMKAAETSFALLKFDAKSDSSVVLCR 245
Query: 291 PITGRTHQIRVHLQYTGYPIAND 313
P TGRTHQIR+HLQY G+PIAND
Sbjct: 246 PATGRTHQIRLHLQYLGHPIAND 268
>gi|388583816|gb|EIM24117.1| pseudouridine synthase, partial [Wallemia sebi CBS 633.66]
Length = 468
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/276 (37%), Positives = 155/276 (56%), Gaps = 16/276 (5%)
Query: 45 ANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKC 104
A+PP I ++G R V PYY+ + ++ K RW G+ +V++ EF+ R YY A++
Sbjct: 15 ADPP---KIINKNGLRCVLPYYYVYQTYAKERWFGRKLVEVCTTEFRDRSKSYYEWAIQS 71
Query: 105 GRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQK--EPDVLTVCKPPSVPV 162
G ++ E + +++ I + +H HEPPV+A I+ + E L V KP S+PV
Sbjct: 72 GIATINREKATLDSALRNGDLIQNKVHAHEPPVVAELPVIIYRDDEKGWLVVSKPGSMPV 131
Query: 163 HPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVI 222
HP G+YRKNT++ IL+ EH + L+ +RLDRL SG++++ + G +
Sbjct: 132 HPTGRYRKNTLLEILKDEHAIENLYCCNRLDRLTSGVMVIGTKKAAGSQLGAAFMKGSIK 191
Query: 223 KRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNG 282
K YIA+V G FP+ E V + I + G GK+A T F R+S +
Sbjct: 192 KEYIAKVIGKFPDREVVDEPIITVDRQMGLVIRHKN---------GKSAKTIFERMSYDE 242
Query: 283 T--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
S+V C+P+TGRTHQ+RVHLQY G+PIAND LY
Sbjct: 243 ATDTSVVYCQPLTGRTHQLRVHLQYLGHPIANDPLY 278
>gi|380015967|ref|XP_003691965.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Apis florea]
Length = 504
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 140/269 (52%), Gaps = 42/269 (15%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+++FA EF+ P + Y ++ G + V+ +
Sbjct: 110 YYVENGLRKVYPYYFTFTTFTKGRWVGEKILEVFAREFRAHPAEEYERCIRAGTLTVNYQ 169
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSV--PVHPCGQYRK 170
V V Y ++ + D+L K S+ VHPCG+YR
Sbjct: 170 KVDVDYRLRHN--------------------------DLLANVKRGSLGLQVHPCGRYRH 203
Query: 171 NTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
NTVV IL E++L L +HRLDRL SG+L+ R KA QI +V K+Y+ RV
Sbjct: 204 NTVVFILAKEYNLKNLRTIHRLDRLTSGILLFGRTPKKARQMEHQIRNRQVHKQYVCRVE 263
Query: 231 GVFPEGEQVVDVNI---NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIV 287
G FPE E V I +Y + + KGK T+F R+S NG S+V
Sbjct: 264 GEFPEEEVVCSEPIEVVSYKIGVCKVSE-----------KGKDCVTRFKRLSYNGKSSVV 312
Query: 288 LCEPITGRTHQIRVHLQYTGYPIANDMLY 316
LC+P TGR HQIRVHLQY GYP+ ND LY
Sbjct: 313 LCKPQTGRMHQIRVHLQYLGYPVVNDPLY 341
>gi|258566750|ref|XP_002584119.1| hypothetical protein UREG_04808 [Uncinocarpus reesii 1704]
gi|237905565|gb|EEP79966.1| hypothetical protein UREG_04808 [Uncinocarpus reesii 1704]
Length = 537
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/335 (31%), Positives = 167/335 (49%), Gaps = 39/335 (11%)
Query: 40 VWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYV 99
V TP +P Y G R V PY++ + ++ K RW G+ ++++F EF+ RP +YY
Sbjct: 26 VLVTPCDP-WPRPYYLEKGFRRVAPYHYTYNTYCKERWRGRNLLEIFTTEFRDRPAEYYK 84
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPS 159
A++ G + ++ + + V + +SH LHRHEPPV + + ++ ++ ++ + KP
Sbjct: 85 EAIESGHVAINGKPGNLDTRVMNGDMVSHTLHRHEPPVTSLPIGVIHEDDKMIVIDKPAG 144
Query: 160 VPVHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIE 217
VPVHP G+Y N+++ I++AE H P P +RLDRL SG++ + ++ A+ + +
Sbjct: 145 VPVHPAGRYNYNSIIEIMRAERGHSFNPR-PCNRLDRLTSGVMFIGKDPKAAEKIAEGLR 203
Query: 218 AGKVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRSTAESGDSLG------ 262
A + K YIARV G FP+G + D + +N S+G+ L
Sbjct: 204 ARTMQKEYIARVKGKFPDGIILCDQPMLKISPQLGLNRVRSSGKEAKTKFRRLAYYPPTA 263
Query: 263 --------------------DTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVH 302
D P+ K T + +SIV C P+TGRTHQ+RVH
Sbjct: 264 VTKKSSSEDEPATPPATLPDDAPMDFPNNNNKATTTPDDEGYSIVHCLPLTGRTHQLRVH 323
Query: 303 LQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSH 337
LQ+ G+PI ND +Y V R+ AD +
Sbjct: 324 LQFLGHPITNDPIYSNRRVFGRDLGKADNTGEHDQ 358
>gi|389739659|gb|EIM80852.1| pseudouridine synthase [Stereum hirsutum FP-91666 SS1]
Length = 525
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 175/330 (53%), Gaps = 16/330 (4%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
R G + + PY++ + + K RW + I+++ + EF+ R +YY A++ G V+ ++
Sbjct: 12 RPGLKKIAPYWYPYTTMAKGRWFDREILEVVSTEFRDRSVEYYRYALESGVTTVNGKIAR 71
Query: 116 VSYTVKSSQKISHFLHRHEPPVMAWDVSILQK--EPDVLTVCKPPSVPVHPCGQYRKNTV 173
+++ ++ + +HRHEPPV + V IL E + + + KP S+PVH G++ ++
Sbjct: 72 PGTILRNGDRLENIVHRHEPPVTSTPVQILHTDYEREFIVINKPGSIPVHATGRFFYLSL 131
Query: 174 VGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVF 233
V ILQ E ++ V+RLDRL SG++++ ++ +A ++ AG+V K YIAR G F
Sbjct: 132 VEILQREFGFKKVYTVNRLDRLTSGIMVVGLSSKRAHTLSEEFTAGQVKKEYIARCKGEF 191
Query: 234 PEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI--STNGTHSIVLCEP 291
PEGE VD + T + L +GK A T FTR+ N S++ C P
Sbjct: 192 PEGETYVDQPM--------LTVDRQMGLNIIHPEGKTAQTIFTRLHYDANTDTSVLHCRP 243
Query: 292 ITGRTHQIRVHLQYTGYPIANDMLYLCEHV----THREGMSADRAAAYSHHSPPPVSSDK 347
+TGR+HQIRVHLQY G+P+AND +Y + + G+ + + S +PPP
Sbjct: 244 LTGRSHQIRVHLQYLGHPVANDPIYSETKIWGPNLGKGGIDINPSDERSAPAPPPQFQTT 303
Query: 348 SESSSEDFSIDPMCTNCPNLAPKGKRLLSS 377
+ + E S P + P + LS+
Sbjct: 304 NAPNPEQLSRSPKTQSIDPWYPSHENDLSA 333
>gi|378754946|gb|EHY64974.1| hypothetical protein NERG_02030 [Nematocida sp. 1 ERTm2]
Length = 450
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 146/254 (57%), Gaps = 6/254 (2%)
Query: 65 YYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ 124
Y +E ++ K RW G ++D+ + EFK R Y+ A++ G I V+ + V SY +K
Sbjct: 22 YIYEHRAYTKERWVGCKLLDVLSNEFKRRSSLYFQKAIEAGSIHVNAQTVDTSYILKHGD 81
Query: 125 KISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLA 184
I+H HRHEPP+ + I+ + D+L V KP +P HP Y KN++ IL+ L+
Sbjct: 82 LITHTTHRHEPPIPTDKIDIIYENNDILVVDKPSGIPCHPNSSYNKNSLTEILKQRLGLS 141
Query: 185 PLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI 244
+ +RLD+ SG++ILA+N+ A + +++ + IK Y+ +V G FPE E +VD+ +
Sbjct: 142 FISAQNRLDKQTSGIVILAKNSQAAVEYHKKMAEREGIKIYLCKVRGEFPEHEIIVDLPL 201
Query: 245 NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI--STNGTHSIVLCEPITGRTHQIRVH 302
+ R T + D +GK + T F RI +T SI+ C +TGRTHQIRVH
Sbjct: 202 ----AISRKTCTTTIHQIDGVFQGKKSTTIFRRIPQNTAAGESILACGLVTGRTHQIRVH 257
Query: 303 LQYTGYPIANDMLY 316
LQ G+PI +DM+Y
Sbjct: 258 LQAIGFPIVDDMVY 271
>gi|426197759|gb|EKV47686.1| hypothetical protein AGABI2DRAFT_185612 [Agaricus bisporus var.
bisporus H97]
Length = 560
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 152/263 (57%), Gaps = 12/263 (4%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G + + PY++ + + K RW G+ ++++ + EF+ R +YY A++ G V+ ++
Sbjct: 47 GLKKIPPYWYPYTTMAKMRWLGRELLEVVSTEFRDRSMEYYRYALESGMTTVNGKIAKPD 106
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQK--EPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+K +I + +HRHEPPV + V IL + E + + V KP S+PVH G+Y KNT++
Sbjct: 107 TVLKDGDRIENVVHRHEPPVSSRSVKILHRDTEREFIIVDKPGSIPVHASGRYYKNTLIE 166
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL + + ++PV+RLDRL SGL+I+ ++ +A + AG V K YIAR G FP+
Sbjct: 167 ILVNDFGFSKVYPVNRLDRLTSGLMIIPLSSDRARQLTSEFTAGTVQKEYIARCKGRFPD 226
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPIT 293
E V + + T + L +GK A T F I + + S+V C P+T
Sbjct: 227 EEIVCEEPL--------LTVDRQMGLNIVHPEGKHAKTIFNLIRYDASTDSSVVRCRPLT 278
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GR+HQIRVHLQ+ G+PIAND +Y
Sbjct: 279 GRSHQIRVHLQFLGHPIANDPVY 301
>gi|242212124|ref|XP_002471897.1| predicted protein [Postia placenta Mad-698-R]
gi|220728995|gb|EED82877.1| predicted protein [Postia placenta Mad-698-R]
Length = 435
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 154/263 (58%), Gaps = 12/263 (4%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G R + PY++ + + K RW G+ I+++ + EF+ R +YY A++ G ++ +
Sbjct: 2 GLRKIPPYWYPYTTMAKGRWLGREILEVVSTEFRDRSMEYYRYALESGVTTINGTIAKPD 61
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQ--KEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
V++ +I + +HRHEPPV + V I+ +E + + + KP S+PVH G++ +N++V
Sbjct: 62 TIVQNGDRIENVVHRHEPPVTSTPVRIIHYDREREFIIIDKPGSIPVHASGRFFRNSLVE 121
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL+ + ++ ++RLDRL SGL+I+ ++S A+ Q+ AG + K YIAR G FP+
Sbjct: 122 ILKNDFGFKKVYTINRLDRLTSGLMIIPLSSSMANTLTQEFAAGTIRKEYIARCRGQFPK 181
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI--STNGTHSIVLCEPIT 293
E +V + T + L +GK A T F R+ N S+V C+P+T
Sbjct: 182 EELACEVPL--------LTIDRQMGLNVVHPEGKPAKTIFKRMHYDANTDTSVVHCKPLT 233
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GR+HQIRVHLQY G+P+AND +Y
Sbjct: 234 GRSHQIRVHLQYLGHPVANDPIY 256
>gi|323453198|gb|EGB09070.1| hypothetical protein AURANDRAFT_53496 [Aureococcus anophagefferens]
Length = 430
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/268 (39%), Positives = 141/268 (52%), Gaps = 21/268 (7%)
Query: 52 DYIFRDGR---RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQ 108
+Y+F + R VKPY F + + K RW G+ ++FA EFK P YY A+ GRI
Sbjct: 74 EYVFDESSALSRRVKPYVFTYTMNCKGRWIGRRPAEIFAAEFKMNPASYYAEALADGRIL 133
Query: 109 VDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQY 168
V+ E+ +K+ + H HRHEPPV ++++ + VL V KP +VP+HPCG Y
Sbjct: 134 VNGELCGDDLVLKNGDVLVHRAHRHEPPVRGGPIAVVGLDARVLAVDKPGTVPMHPCGSY 193
Query: 169 RKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIAR 228
N + +L D P VHRLDRL SGL++LAR+A A I AG+ K Y+AR
Sbjct: 194 HYNALSSLLA--EDFTPRSFVHRLDRLTSGLVLLARSAEAATELCDCIGAGRARKTYVAR 251
Query: 229 VNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
V G FPE A+ G A + T + +GT S V
Sbjct: 252 VAGRFPERAPA--------ATRGPDAARPDEDASRTRF-------RLLHRHADGT-STVE 295
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P TGRTHQIR+HLQ+ G+PIAND Y
Sbjct: 296 CHPRTGRTHQIRLHLQWLGHPIANDPNY 323
>gi|440294909|gb|ELP87849.1| ribosomal pseudouridine synthase, putative [Entamoeba invadens IP1]
Length = 407
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/277 (38%), Positives = 157/277 (56%), Gaps = 13/277 (4%)
Query: 45 ANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKC 104
A ++ Y F + R V+PYY+ F + K RW GK+IV++F EFK + A++
Sbjct: 49 AEELLETTYYFENNYRRVQPYYYNFKVNAKGRWVGKSIVEVFVSEFKVCDVNGTELAIQR 108
Query: 105 GRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHP 164
G I V++ +SY V+ I H +HRHEPPV + +V I+++ D + V KP S+PVHP
Sbjct: 109 GDITVNDLPTTLSYKVRMGDHIGHRVHRHEPPVTSQEVKIIKETQDFIVVDKPGSIPVHP 168
Query: 165 CGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKR 224
CG+YR NTVV I+ A L L PVHRLDR+ SG+LILA++A A ++I + + K
Sbjct: 169 CGRYRHNTVVFIM-ASLGLKTLRPVHRLDRMTSGILILAKSADAARRVGEKICSKQTAKV 227
Query: 225 YIARVNGVFPEGEQVVDVNINYNASAGR-STAESGDSLGD--TPLKGKAACTKFTRI--S 279
Y+ RV G E + GR S E D + KGKA+ ++F +
Sbjct: 228 YLIRVRGKMSE-------MVTVEGKIGRQSKKEKIDVMVQHIDEEKGKASKSQFEPLFYD 280
Query: 280 TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+++ + +GRTHQ+RVHL+ G+P+AND +Y
Sbjct: 281 EKSNTTVITGKLESGRTHQLRVHLKEIGHPVANDPIY 317
>gi|259483290|tpe|CBF78558.1| TPA: DRAP deaminase (Rib2), putative (AFU_orthologue; AFUA_2G16360)
[Aspergillus nidulans FGSC A4]
Length = 572
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 156/286 (54%), Gaps = 22/286 (7%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V PY++ + ++ K RW + ++D+F EF+ R YY A++ G + V+ +
Sbjct: 36 YYFEGGLRRVYPYHYTYNTYCKERWRNRELIDIFTSEFRDREPGYYKKALESGNVCVNGK 95
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
+K+ + ISH LHRHEPPV ++ I+ + D+L + KP VPVH G+Y N+
Sbjct: 96 PAGPHTVLKNGEVISHTLHRHEPPVTGNEIGIIHETDDLLVIDKPAGVPVHSTGRYHYNS 155
Query: 173 VVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
V+ IL+ ++ A + P +RLDRL SG++ + + A AD +++ V K Y+ARV G
Sbjct: 156 VMEILRIQNGGAYVPRPCNRLDRLTSGVMFVGKTAQGADRMTVKLKERTVQKEYVARVKG 215
Query: 232 VFPEGEQVVD---------VNINYNASAGRSTAESGDSLG------------DTPLKGKA 270
FP+G VVD V +N + G+ L D +
Sbjct: 216 RFPDGVVVVDQPIMSVSPKVGLNRVRATGKEAKTKFRRLAYYPPPSPTTSTSDEGENARP 275
Query: 271 ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A + ++ + +SIV C P+TGRTHQIRVHLQ+ G+PI+ND +Y
Sbjct: 276 ATPPPSYVNESEGYSIVHCFPLTGRTHQIRVHLQFLGHPISNDPIY 321
>gi|409080845|gb|EKM81205.1| hypothetical protein AGABI1DRAFT_119717 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 560
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 152/263 (57%), Gaps = 12/263 (4%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G + + PY++ + + K RW G+ ++++ + EF+ R +YY A++ G V+ ++
Sbjct: 47 GLKKIPPYWYPYTTMAKMRWLGRELLEVVSTEFRDRSMEYYRYALESGMTTVNGKIAKPD 106
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQK--EPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+K +I + +HRHEPPV + V IL + E + + V KP S+PVH G+Y KNT++
Sbjct: 107 TVLKDGDRIENVVHRHEPPVSSRSVKILHRDTEREFIIVDKPGSIPVHASGRYYKNTLIE 166
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL + + ++PV+RLDRL SGL+I+ ++ +A + AG V K Y+AR G FP+
Sbjct: 167 ILVNDFGFSKVYPVNRLDRLTSGLMIIPLSSDRARQLTSEFTAGTVQKEYVARCKGRFPD 226
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPIT 293
E V + + T + L +GK A T F I + + S+V C P+T
Sbjct: 227 EEIVCEEPL--------LTVDRQMGLNIVHPEGKHAKTIFNLIRYDASTDSSVVRCRPLT 278
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GR+HQIRVHLQ+ G+PIAND +Y
Sbjct: 279 GRSHQIRVHLQFLGHPIANDPVY 301
>gi|405120252|gb|AFR95023.1| DRAP deaminase [Cryptococcus neoformans var. grubii H99]
Length = 519
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 153/261 (58%), Gaps = 13/261 (4%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +K Y++ + + VK RW G+ ++++ EF+ R +YY A++ G +V+ +
Sbjct: 21 RYIKSYWWPYKTFVKQRWIGRQLLEVITTEFRDRSLEYYRHALESGVTRVNGVVARPDLI 80
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQ--KEPDVLTVCKPPSVPVHPCGQYRKNTVVGIL 177
+++ +I + +HRHEPPV + +L +E + + + KP S+PVH G+Y K+TV+ ++
Sbjct: 81 LRNGDRIDNTVHRHEPPVTNDPILVLHIDREREFIVISKPGSLPVHAAGRYFKHTVLEMM 140
Query: 178 QAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237
++++ L + V+RLDRL SGL+ILA + A ++ GKV K Y+ARV G FPE E
Sbjct: 141 ESDYGLK-CYSVNRLDRLTSGLMILALSGKAASKLAREFAEGKVKKEYVARVKGKFPEEE 199
Query: 238 QVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPITGR 295
VD + T + L +GK A T F RI+ + S+V C P TGR
Sbjct: 200 ITVDKPM--------MTVDRQMGLVIITPEGKDAVTIFNRIAYDPVRDQSVVRCRPQTGR 251
Query: 296 THQIRVHLQYTGYPIANDMLY 316
THQIRVHLQY G+PIAND LY
Sbjct: 252 THQIRVHLQYLGHPIANDPLY 272
>gi|392561147|gb|EIW54329.1| pseudouridine synthase [Trametes versicolor FP-101664 SS1]
Length = 581
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 152/263 (57%), Gaps = 12/263 (4%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G + + PY++ + + K RW G+ I+++ + EF+ R ++Y A++ G ++ ++
Sbjct: 27 GLKKIPPYWYPYTTMAKGRWLGREILEVVSTEFRDRSMEFYRYALQSGVTTINGKIAKPD 86
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQ--KEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+++ +I + HRHEPPV + V I+ +E + + + KP S+PVH G++ +N++V
Sbjct: 87 TIIRNGDRIENISHRHEPPVTSTPVRIVHHDREREFIVIDKPGSIPVHAAGRFFRNSLVE 146
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL+ + + V+RLDRL SGL+IL NA A+ Q+ G+V K Y+AR NG FPE
Sbjct: 147 ILKNDFGFEKTYTVNRLDRLTSGLMILPLNAKLANTVTQEFMNGQVRKEYVARCNGKFPE 206
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI--STNGTHSIVLCEPIT 293
E + + + T + L +GK A T F RI N S++ C P+T
Sbjct: 207 EEVICEEPL--------LTVDRQMGLNVVHPEGKHAKTIFKRIRYDANTDTSVLHCRPMT 258
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GR+HQIRVHLQY G+PIAND +Y
Sbjct: 259 GRSHQIRVHLQYLGHPIANDPIY 281
>gi|349578375|dbj|GAA23541.1| K7_Pus6p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 404
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 164/306 (53%), Gaps = 47/306 (15%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
++G R V+PYY + VK RW GK ++D+ EFK RP YY+ ++ G ++ + VP
Sbjct: 12 QNGLRKVRPYYNRRSAFVKGRWLGKLLIDVLVSEFKLRPRAYYLDQIRKGTYRLIRDGVP 71
Query: 116 V------SYTVKSSQKISHFLHRHEPPVMAW---------------DVSILQKEPDVLTV 154
+ + +K+ + H+HEPPV W +I+ + +L +
Sbjct: 72 LVPDHLMTTIIKNHDVLETTTHKHEPPVKQWCSQEVEAEDLPGRIAGFNIIFENESILVI 131
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQ 214
KP +PVHP GQ+ +NT+ +L+ H + L P +RLD++ SGLLILA+N+ A ++
Sbjct: 132 DKPSGIPVHPTGQFYQNTITELLKL-HGVDAL-PCYRLDKITSGLLILAKNSQSAGEIQK 189
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAE--SGDSLGDTPL------ 266
I + +IK Y+ARV G FP E ++D N SA +T E S ++ TP+
Sbjct: 190 SIRSRDMIKIYLARVKGRFPHSELILD-----NESAAETTFEDTSKVTVEMTPIYSIDPK 244
Query: 267 --------KGKAACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A TKF R ++ ++V C+PITGRTHQIR+HL G+PI ND +Y
Sbjct: 245 RQFPVGLSASKDAITKFYPIRYFSHADETVVACKPITGRTHQIRIHLARLGHPIVNDSVY 304
Query: 317 LCEHVT 322
C H+T
Sbjct: 305 -CSHIT 309
>gi|67900736|ref|XP_680624.1| hypothetical protein AN7355.2 [Aspergillus nidulans FGSC A4]
gi|40742536|gb|EAA61726.1| hypothetical protein AN7355.2 [Aspergillus nidulans FGSC A4]
Length = 1054
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 156/286 (54%), Gaps = 22/286 (7%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V PY++ + ++ K RW + ++D+F EF+ R YY A++ G + V+ +
Sbjct: 518 YYFEGGLRRVYPYHYTYNTYCKERWRNRELIDIFTSEFRDREPGYYKKALESGNVCVNGK 577
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
+K+ + ISH LHRHEPPV ++ I+ + D+L + KP VPVH G+Y N+
Sbjct: 578 PAGPHTVLKNGEVISHTLHRHEPPVTGNEIGIIHETDDLLVIDKPAGVPVHSTGRYHYNS 637
Query: 173 VVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
V+ IL+ ++ A + P +RLDRL SG++ + + A AD +++ V K Y+ARV G
Sbjct: 638 VMEILRIQNGGAYVPRPCNRLDRLTSGVMFVGKTAQGADRMTVKLKERTVQKEYVARVKG 697
Query: 232 VFPEGEQVVD---------VNINYNASAGRSTAESGDSLG------------DTPLKGKA 270
FP+G VVD V +N + G+ L D +
Sbjct: 698 RFPDGVVVVDQPIMSVSPKVGLNRVRATGKEAKTKFRRLAYYPPPSPTTSTSDEGENARP 757
Query: 271 ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A + ++ + +SIV C P+TGRTHQIRVHLQ+ G+PI+ND +Y
Sbjct: 758 ATPPPSYVNESEGYSIVHCFPLTGRTHQIRVHLQFLGHPISNDPIY 803
>gi|398366003|ref|NP_011685.3| pseudouridine synthase PUS6 [Saccharomyces cerevisiae S288c]
gi|1723726|sp|P53294.1|PUS6_YEAST RecName: Full=tRNA pseudouridine(31) synthase; AltName:
Full=Pseudouridine synthase 6; AltName:
Full=Pseudouridylate synthase 6; AltName: Full=Uracil
hydrolyase; AltName: Full=tRNA pseudouridine 31
synthase; Short=PSI31 synthase
gi|1323298|emb|CAA97195.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285812363|tpg|DAA08263.1| TPA: pseudouridine synthase PUS6 [Saccharomyces cerevisiae S288c]
gi|392299422|gb|EIW10516.1| Pus6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 404
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 163/304 (53%), Gaps = 43/304 (14%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
++G R V+PYY + VK RW GK ++D+ EFK RP YY+ ++ G ++ + VP
Sbjct: 12 QNGLRKVRPYYNRRSAFVKGRWLGKLLIDVLVSEFKLRPRAYYLDQIRKGTYRLIRDGVP 71
Query: 116 V------SYTVKSSQKISHFLHRHEPPVMAW---------------DVSILQKEPDVLTV 154
+ + +K+ + H+HEPPV W +I+ ++ +L +
Sbjct: 72 LVPDHLMTTIIKNHDVLETTTHKHEPPVKQWCSQEVEAEDLPGRIAGFNIVFEDESILVI 131
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQ 214
KP +PVHP GQ+ +NT+ +L+ H + L P +RLD++ SGLLILA+N+ A ++
Sbjct: 132 DKPSGIPVHPTGQFYQNTITELLKL-HGVDAL-PCYRLDKITSGLLILAKNSQSAGEIQK 189
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL-------- 266
I + +IK Y+ARV G FP E ++D N NA+ S ++ TP+
Sbjct: 190 SIRSRDMIKIYLARVKGRFPHSELILD---NENAAETTFEDTSKVTVEMTPIYSIDPKRQ 246
Query: 267 ------KGKAACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLC 318
K A TKF R ++ ++V C+PITGRTHQIR+HL G+PI ND +Y C
Sbjct: 247 FPVGLSTSKDAITKFYPIRYFSHADETVVACKPITGRTHQIRIHLARLGHPIVNDSVY-C 305
Query: 319 EHVT 322
H+T
Sbjct: 306 SHIT 309
>gi|254569206|ref|XP_002491713.1| Mitochondrial tRNA pseudouridine synthase involved in
pseudouridylation of mitochondrial tRNAs [Komagataella
pastoris GS115]
gi|238031510|emb|CAY69433.1| Mitochondrial tRNA pseudouridine synthase involved in
pseudouridylation of mitochondrial tRNAs [Komagataella
pastoris GS115]
Length = 358
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/278 (38%), Positives = 154/278 (55%), Gaps = 24/278 (8%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRI----- 107
Y R PY++ + HVK RW G T++D+F EFK R +YY + G I
Sbjct: 5 YTINANLRQCNPYFYTHVFHVKGRWIGMTVLDVFCNEFKSRSEEYYRLNIDNGTIKLIRN 64
Query: 108 ------QVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
Q ++ + S +KS + + H+HEP V + I+ ++ ++L V KP VP
Sbjct: 65 RGLATEQTIDKSLLYSTLIKSGDCVVNTEHKHEPEVGIGE-EIVYQDDNILVVNKPCGVP 123
Query: 162 VHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
VHP G+Y NT+ I++ E ++ L+P HRLDRL SG+LI+ + A ++ Q++ +
Sbjct: 124 VHPTGKYYYNTMTEIMKNELGVSSLYPCHRLDRLTSGILIIGKTPRAAAKYQTQLKQNSI 183
Query: 222 IKRYIARVNGVFPEGEQVV-DVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI-- 278
K YIARV+G FP G V D +N + G+ E+G + + K A T F R+
Sbjct: 184 QKTYIARVDGEFPMGNIVCSDKIVNIDCKRGK---ENGIT------EPKEALTNFQRLAY 234
Query: 279 STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
ST+ SIV C P TGRTHQIR+HL+ G+PIAND LY
Sbjct: 235 STSLNQSIVKCSPKTGRTHQIRIHLRNLGHPIANDPLY 272
>gi|392591081|gb|EIW80409.1| pseudouridine synthase [Coniophora puteana RWD-64-598 SS2]
Length = 524
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/268 (36%), Positives = 149/268 (55%), Gaps = 12/268 (4%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G + + PY+F + + K RW G+ I+++ + EF+ R +YY A++ G ++ E+
Sbjct: 22 GLKKIAPYWFPYHTMAKERWLGREILEIVSTEFRDRSMEYYRYALESGVTTINGEVARPD 81
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSIL--QKEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
V++ +I + +HRHEPPV + V I+ KE + V KP S+PVH G+Y K+++V
Sbjct: 82 TVVQNGDRIENVVHRHEPPVTSTPVKIISHDKERGFIVVNKPGSIPVHSSGRYYKHSLVE 141
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL+ + ++ V+RLDRL SGLLI+ A A + + G + K YIAR G FPE
Sbjct: 142 ILKDDFGFEKIYTVNRLDRLTSGLLIIPLIADLARSLTAEFQNGTIRKEYIARAKGEFPE 201
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI--STNGTHSIVLCEPIT 293
E D + T + L GK A T F R+ N S++ C P+T
Sbjct: 202 EEITCDQPL--------LTVDRQMGLNIVHPDGKPAVTIFKRLHYDANTDSSVLHCRPMT 253
Query: 294 GRTHQIRVHLQYTGYPIANDMLYLCEHV 321
GR+HQIRVHLQ+ G+PIAND +Y E +
Sbjct: 254 GRSHQIRVHLQFLGHPIANDPIYSEERI 281
>gi|323304895|gb|EGA58653.1| Pus6p [Saccharomyces cerevisiae FostersB]
gi|323308935|gb|EGA62166.1| Pus6p [Saccharomyces cerevisiae FostersO]
Length = 404
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 164/306 (53%), Gaps = 47/306 (15%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
++G R V+PYY + VK RW GK ++D+ EFK RP YY+ ++ G ++ + VP
Sbjct: 12 QNGLRKVRPYYNRRSAFVKGRWLGKLLIDVLVSEFKLRPRAYYLDQIRKGTYRLIRDGVP 71
Query: 116 V------SYTVKSSQKISHFLHRHEPPVMAW---------------DVSILQKEPDVLTV 154
+ + +K+ + H+HEPPV W +I+ + +L +
Sbjct: 72 LVPDHLMTTIIKNHDVLETTTHKHEPPVKQWCSQEVEAEDLPGRIAGFNIVFENESILVI 131
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQ 214
KP +PVHP GQ+ +NT+ +L+ H + L P +RLD++ SGLLILA+N+ A ++
Sbjct: 132 DKPSGIPVHPTGQFYQNTITELLKL-HGVDAL-PCYRLDKITSGLLILAKNSQSAGEIQK 189
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAE--SGDSLGDTPL------ 266
I + +IK Y+ARV G FP E ++D N SA +T E S ++ TP+
Sbjct: 190 SIRSRDMIKIYLARVKGRFPHSELILD-----NESAAETTFEDTSKVTVEMTPIYSIDPK 244
Query: 267 --------KGKAACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A TKF R ++ ++V C+PITGRTHQIR+HL G+PI ND +Y
Sbjct: 245 RQFPVGLSASKDAITKFYPIRYFSHADETVVACKPITGRTHQIRIHLARLGHPIVNDSVY 304
Query: 317 LCEHVT 322
C H+T
Sbjct: 305 -CSHIT 309
>gi|151943445|gb|EDN61756.1| pseudouridine synthase [Saccharomyces cerevisiae YJM789]
gi|190406816|gb|EDV10083.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
gi|323333566|gb|EGA74960.1| Pus6p [Saccharomyces cerevisiae AWRI796]
Length = 404
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 163/304 (53%), Gaps = 43/304 (14%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
++G R V+PYY + VK RW GK ++D+ EFK RP YY+ ++ G ++ + VP
Sbjct: 12 QNGLRKVRPYYNRRSAFVKGRWLGKLLIDVLVSEFKLRPRAYYLDQIRKGTYRLIRDGVP 71
Query: 116 V------SYTVKSSQKISHFLHRHEPPVMAW---------------DVSILQKEPDVLTV 154
+ + +K+ + H+HEPPV W +I+ ++ +L +
Sbjct: 72 LVPDHLMTTIIKNHDVLETTTHKHEPPVKQWCSQEVEAEDLPGRIAGFNIVFEDESILVI 131
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQ 214
KP +PVHP GQ+ +NT+ +L+ H + L P +RLD++ SGLLILA+N+ A ++
Sbjct: 132 DKPSGIPVHPTGQFYQNTITELLKL-HGVDAL-PCYRLDKITSGLLILAKNSQSAGEIQK 189
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL-------- 266
I + +IK Y+ARV G FP E ++D N NA+ S ++ TP+
Sbjct: 190 SIRSRDMIKIYLARVKGRFPHSELILD---NENAAETTFEDTSKVTVEMTPIYSIDPKRQ 246
Query: 267 ------KGKAACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLC 318
K A TKF R ++ ++V C+PITGRTHQIR+HL G+PI ND +Y C
Sbjct: 247 FPVGLSASKDAITKFYPIRYFSHADETVVACKPITGRTHQIRIHLARLGHPIVNDSVY-C 305
Query: 319 EHVT 322
H+T
Sbjct: 306 SHIT 309
>gi|321257772|ref|XP_003193704.1| hypothetical protein CGB_D5020C [Cryptococcus gattii WM276]
gi|317460174|gb|ADV21917.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 497
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/264 (38%), Positives = 153/264 (57%), Gaps = 17/264 (6%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +K Y++ + + VK RW G+ ++++ EF+ R +YY A++ G +V+ +
Sbjct: 21 RYIKSYWWPYKTFVKQRWIGRQLLEVITTEFRDRSMEYYRHALESGVTRVNGVVARPDLI 80
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQ--KEPDVLTVCKPPSVPVHPCGQYRKNTVVGIL 177
+++ +I + +HRHEPPV + IL +E + + + KP S+PVH G+Y K+TV+ ++
Sbjct: 81 LRNGDRIDNTVHRHEPPVTNDPILILHIDREREFIVISKPGSLPVHAAGRYFKHTVLEMM 140
Query: 178 QAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237
++++ L + V+RLDRL SGL+ILA + A ++ GKV K Y+ARV G FPE E
Sbjct: 141 ESDYGLK-CYSVNRLDRLTSGLMILALSGKAASKLAREFVEGKVKKEYVARVKGKFPEEE 199
Query: 238 QVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPI 292
VD + ++ T E K + A T F RI+ + S+V C P
Sbjct: 200 VTVDKPMMTVDRQMGLVIITPEG---------KSQDAVTIFNRIAYDPVRDQSVVRCRPQ 250
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGRTHQIRVHLQY GYPIAND LY
Sbjct: 251 TGRTHQIRVHLQYLGYPIANDPLY 274
>gi|256272036|gb|EEU07049.1| Pus6p [Saccharomyces cerevisiae JAY291]
Length = 404
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 163/304 (53%), Gaps = 43/304 (14%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
++G R V+PYY + VK RW GK ++D+ EFK RP YY+ ++ G ++ + VP
Sbjct: 12 QNGLRKVRPYYNRRSAFVKGRWLGKLLIDVLVSEFKLRPRAYYLDQIRKGTYRLIRDGVP 71
Query: 116 V------SYTVKSSQKISHFLHRHEPPVMAW---------------DVSILQKEPDVLTV 154
+ + +K+ + H+HEPPV W +I+ ++ +L +
Sbjct: 72 LVPDHLMTTIIKNHDVLETTTHKHEPPVKQWCSQEVEAEDLPGRIAGFNIVFEDESILVI 131
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQ 214
KP +PVHP GQ+ +NT+ +L+ H + L P +RLD++ SGLLILA+N+ A ++
Sbjct: 132 DKPSGIPVHPTGQFYQNTITELLKL-HGVDAL-PCYRLDKITSGLLILAKNSQSAGEIQK 189
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL-------- 266
I + +IK Y+ARV G FP E ++D N NA+ S ++ TP+
Sbjct: 190 SIRSRDMIKIYLARVKGRFPHSELILD---NENAAETTFEDTSKVTVELTPIYSIDPKRQ 246
Query: 267 ------KGKAACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLC 318
K A TKF R ++ ++V C+PITGRTHQIR+HL G+PI ND +Y C
Sbjct: 247 FPVGLSASKDAITKFYPIRYFSHADETVVACKPITGRTHQIRIHLARLGHPIVNDSVY-C 305
Query: 319 EHVT 322
H+T
Sbjct: 306 SHIT 309
>gi|207345036|gb|EDZ71984.1| YGR169Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|323354851|gb|EGA86684.1| Pus6p [Saccharomyces cerevisiae VL3]
Length = 404
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 163/304 (53%), Gaps = 43/304 (14%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
++G R V+PYY + VK RW GK ++D+ EFK RP YY+ ++ G ++ + VP
Sbjct: 12 QNGLRKVRPYYNRRSAFVKGRWLGKLLIDVLVSEFKLRPRAYYLDQIRKGTYRLIRDGVP 71
Query: 116 V------SYTVKSSQKISHFLHRHEPPVMAW---------------DVSILQKEPDVLTV 154
+ + +K+ + H+HEPPV W +I+ ++ +L +
Sbjct: 72 LVPDHLMTTIIKNHDVLETTTHKHEPPVKQWCSQEVEAEDLPGRIAGFNIVFEDESILVI 131
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQ 214
KP +PVHP GQ+ +NT+ +L+ H + L P +RLD++ SGLLILA+N+ A ++
Sbjct: 132 DKPSGIPVHPTGQFYQNTITELLKF-HGVDAL-PCYRLDKITSGLLILAKNSQSAGEIQK 189
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL-------- 266
I + +IK Y+ARV G FP E ++D N NA+ S ++ TP+
Sbjct: 190 SIRSRDMIKIYLARVKGRFPHSELILD---NENAAETTFEDTSKVTVEMTPIYSIDPKRQ 246
Query: 267 ------KGKAACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLC 318
K A TKF R ++ ++V C+PITGRTHQIR+HL G+PI ND +Y C
Sbjct: 247 FPVGLSASKDAITKFYPIRYFSHADETVVACKPITGRTHQIRIHLARLGHPIVNDSVY-C 305
Query: 319 EHVT 322
H+T
Sbjct: 306 SHIT 309
>gi|353231534|emb|CCD77952.1| putative ribosomal pseudouridine synthase [Schistosoma mansoni]
Length = 455
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 163/348 (46%), Gaps = 41/348 (11%)
Query: 52 DYIFRDG-RRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVD 110
DY + DG R V PY+F F ++ K RW + + D+ EF + + G I V+
Sbjct: 59 DY-YTDGIFRKVFPYHFVFKAYAKERWINRKLRDVMQSEFNNNSDEAIAQKCESGEILVN 117
Query: 111 EEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRK 170
V Y + S +S +HRHE PV+ + + D+L V KPPS+P+HPCGQY
Sbjct: 118 NAKVDPDYIINDSDLLSQKVHRHECPVLNLPIEFVHDSDDILVVNKPPSIPIHPCGQYTL 177
Query: 171 NTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
N++ IL ++ L PL HRLDR+ SGLL++A+N + + QI + +V K YI V
Sbjct: 178 NSITHILAKDYGLRPLRFTHRLDRMTSGLLLIAKNYDTSVRLQSQISSKEVAKYYICHVE 237
Query: 231 GVFPEG--EQVVDVNINYNASA--------GRSTAESG---DSLGDTPLKGKAACTKFTR 277
G FP +Q IN R G +S G GK A T F R
Sbjct: 238 GCFPTEPIDQCTGFEINNGVVVCSQPVGPISRRMGVHGVLPESAG-----GKFARTHFLR 292
Query: 278 ISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY-----------------LC 318
+S N S+V+C TGRTHQIR+H+QY GYPI +D LY
Sbjct: 293 LSYNPVTDTSLVICRLFTGRTHQIRIHVQYLGYPIVDDPLYNSADWGELKGKGANYGITI 352
Query: 319 EHVTHREGMSADRAAAYSHHSPPPVSSDKSESSSEDFSI--DPMCTNC 364
E V R S +R + + S + E + DP+C +C
Sbjct: 353 EEVIQRLSNSRNREKYIIQETNEKLKSSLDPNVLERLQLCKDPLCPDC 400
>gi|365765438|gb|EHN06946.1| Pus6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 404
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 163/304 (53%), Gaps = 43/304 (14%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
++G R V+PYY + VK RW GK ++D+ EFK RP YY+ ++ G ++ + VP
Sbjct: 12 QNGLRKVRPYYNRRSAFVKGRWLGKLLIDVLVSEFKLRPRAYYLDQIRKGTYRLIRDGVP 71
Query: 116 V------SYTVKSSQKISHFLHRHEPPVMAW---------------DVSILQKEPDVLTV 154
+ + +K+ + H+HEPPV W +I+ ++ +L +
Sbjct: 72 LVPDHLMTTIIKNHDVLETTTHKHEPPVEQWCSQEVEAEDLPGRIAGFNIVFEDESILVI 131
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQ 214
KP +PVHP GQ+ +NT+ +L+ H + L P +RLD++ SGLLILA+N+ A ++
Sbjct: 132 DKPSGIPVHPTGQFYQNTITELLKL-HGVDAL-PCYRLDKITSGLLILAKNSQSAGEIQK 189
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL-------- 266
I + +IK Y+ARV G FP E ++D N NA+ S ++ TP+
Sbjct: 190 SIRSRDMIKIYLARVKGRFPHSELILD---NENAAETTFEDTSKVTVEMTPIYSIDPKRQ 246
Query: 267 ------KGKAACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLC 318
K A TKF R ++ ++V C+PITGRTHQIR+HL G+PI ND +Y C
Sbjct: 247 FPVGLSASKDAITKFYPIRYFSHADETVVACKPITGRTHQIRIHLARLGHPIVNDSVY-C 305
Query: 319 EHVT 322
H+T
Sbjct: 306 SHIT 309
>gi|387169556|gb|AFJ66215.1| hypothetical protein 34G24.17 [Capsella rubella]
Length = 221
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 133/259 (51%), Gaps = 82/259 (31%)
Query: 120 VKSSQKISH----FLH---RHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
++SS K+SH H RHEPPVM DV IL +EPDV+TVCKP SVP
Sbjct: 38 LQSSSKLSHKQDYIFHGGFRHEPPVMIDDVVILHQEPDVVTVCKPASVP----------- 86
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
+ G L+ R YIA+V GV
Sbjct: 87 -----------------------IEGGLVKKR--------------------YIAKVIGV 103
Query: 233 FPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPI 292
FPE E + SGD D +KGK ACTKFTRI+TNGTHS+V CEP+
Sbjct: 104 FPEDEDAI---------------SSGD---DKKVKGKPACTKFTRIATNGTHSLVSCEPV 145
Query: 293 TGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHHSPPPVSSDKSESSS 352
TGRTHQIRVHLQYTG+PIAND LYL + + + E A R A VS D S+
Sbjct: 146 TGRTHQIRVHLQYTGHPIANDPLYLNQQIDNLETYIAKRIDAGERKI---VSPDDYVYST 202
Query: 353 EDFSIDPMCTNCPNLAPKG 371
EDFSIDPMCTNCP L P+G
Sbjct: 203 EDFSIDPMCTNCPKLIPQG 221
>gi|256079649|ref|XP_002576098.1| ribosomal pseudouridine synthase [Schistosoma mansoni]
Length = 455
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 163/348 (46%), Gaps = 41/348 (11%)
Query: 52 DYIFRDG-RRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVD 110
DY + DG R V PY+F F ++ K RW + + D+ EF + + G I V+
Sbjct: 59 DY-YTDGIFRKVFPYHFVFKAYAKERWINRKLRDVMQSEFNNNSDEAIAQKCESGEILVN 117
Query: 111 EEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRK 170
V Y + S +S +HRHE PV+ + + D+L V KPPS+P+HPCGQY
Sbjct: 118 NAKVDPDYIINDSDLLSQKVHRHECPVLNLPIEFVHDSDDILVVNKPPSIPIHPCGQYTL 177
Query: 171 NTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
N++ IL ++ L PL HRLDR+ SGLL++A+N + + QI + +V K YI V
Sbjct: 178 NSITHILAKDYGLRPLRFTHRLDRMTSGLLLIAKNYDTSVRLQSQISSKEVAKYYICHVE 237
Query: 231 GVFPEG--EQVVDVNINYNASA--------GRSTAESG---DSLGDTPLKGKAACTKFTR 277
G FP +Q IN R G +S G GK A T F R
Sbjct: 238 GCFPTEPIDQCTGFEINNGVVVCSQPVGPISRRMGVHGVLPESAG-----GKFARTHFLR 292
Query: 278 ISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY-----------------LC 318
+S N S+V+C TGRTHQIR+H+QY GYPI +D LY
Sbjct: 293 LSYNPVTDTSLVICRLFTGRTHQIRIHVQYLGYPIVDDPLYNSADWGELKGKGANYGITI 352
Query: 319 EHVTHREGMSADRAAAYSHHSPPPVSSDKSESSSEDFSI--DPMCTNC 364
E V R S +R + + S + E + DP+C +C
Sbjct: 353 EEVIQRLSNSRNREKYIIQETNEKLKSSLDPNVLERLQLCKDPLCPDC 400
>gi|255732273|ref|XP_002551060.1| DRAP deaminase [Candida tropicalis MYA-3404]
gi|240131346|gb|EER30906.1| DRAP deaminase [Candida tropicalis MYA-3404]
Length = 590
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 106/272 (38%), Positives = 158/272 (58%), Gaps = 10/272 (3%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
+Y+ R V PYY+ ++++ K RW + +VD+F +EF+ R + Y AV G ++V+
Sbjct: 80 NYVIEGRLRRVTPYYYTYLTYCKLRWIDRKLVDVFIDEFRDRSAEAYREAVDTGLVKVNS 139
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
++ + +K+ ISH +R EPPV + D+ I+ + D+L + KP +PVHP G+YR N
Sbjct: 140 KVANLETVLKNGDLISHRSYRREPPVTSRDIKIVYENDDILVIDKPSGIPVHPTGRYRYN 199
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV I++ E + P +RLDRL SGL+ L +++ A+ QI V K YIARV G
Sbjct: 200 TVTKIIEQEFG-KTVHPCNRLDRLTSGLMFLGKSSKGANEMMSQIRDRNVSKEYIARVKG 258
Query: 232 VFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN--GTHSIVLC 289
FP V++ + + A + T D GK A T+F RIS + S+V C
Sbjct: 259 EFPIERIVIEKPL--STIAPKLTLNVVDEEN-----GKEAKTEFQRISYDPITDTSVVKC 311
Query: 290 EPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
P+TGRTHQIRVHLQY G+PIAND +Y + +
Sbjct: 312 HPLTGRTHQIRVHLQYIGHPIANDPMYSSQFI 343
>gi|301114795|ref|XP_002999167.1| RNA pseudouridylate synthase, putative [Phytophthora infestans
T30-4]
gi|262111261|gb|EEY69313.1| RNA pseudouridylate synthase, putative [Phytophthora infestans
T30-4]
Length = 556
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 151/285 (52%), Gaps = 40/285 (14%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F +G R V+PY +EF ++ K RW + ++++F +EF DYY A+ GRI V+ +
Sbjct: 190 YSFANGYRMVEPYVYEFRTYAKARWFDRELLEIFTKEFGANSPDYYKFAIASGRITVNNK 249
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
+V +K+ I H HRHEPPV +V ++ ++ D++ V KPPS+P HPCG YR N+
Sbjct: 250 IVLGDTVIKNGDLIIHTAHRHEPPVSGEEVRVVYEDDDLIVVSKPPSMPTHPCGAYRHNS 309
Query: 173 VVGILQAEH-DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
+ ILQA DL L VHRLDRL S R ASK Y+ARV G
Sbjct: 310 LHTILQATRPDLPQLNIVHRLDRLTSA----DRQASKT---------------YLARVRG 350
Query: 232 VFPE------GEQVVDVNINYNASAGRSTAESGDSLGDTPLK--------------GKAA 271
FP+ +++V ++ + E G L PL+ GK +
Sbjct: 351 RFPDVLSSEVQDKLVTQAKEICPASIITFPEEGAVLISCPLRCLSARDGVWECHEEGKPS 410
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T + T+ S+V C+P+TGRTHQIR+HLQ G+PIAND Y
Sbjct: 411 ETLVRLVRTDKCTSLVKCKPVTGRTHQIRLHLQLIGFPIANDPCY 455
>gi|323348440|gb|EGA82685.1| Pus6p [Saccharomyces cerevisiae Lalvin QA23]
Length = 404
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 162/304 (53%), Gaps = 43/304 (14%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
++G R V+PYY + VK RW GK ++D+ EFK RP YY+ ++ ++ + VP
Sbjct: 12 QNGLRKVRPYYNRRSAFVKGRWLGKLLIDVLVSEFKLRPRAYYLDQIRKXTYRLIRDGVP 71
Query: 116 V------SYTVKSSQKISHFLHRHEPPVMAW---------------DVSILQKEPDVLTV 154
+ + +K+ + H+HEPPV W +I+ ++ +L +
Sbjct: 72 LVPDHLMTTIIKNHDVLETTTHKHEPPVXQWCSQEVEAEDLPGRIAGFNIVFEDESILVI 131
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQ 214
KP +PVHP GQ+ +NT+ +L+ H + L P +RLD++ SGLLILA+N+ A ++
Sbjct: 132 DKPSGIPVHPTGQFYQNTITELLKL-HGVDAL-PCYRLDKITSGLLILAKNSQSAGEIQK 189
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL-------- 266
I + +IK Y+ARV G FP E ++D N NA+ S ++ TP+
Sbjct: 190 SIRSRDMIKIYLARVKGRFPHSELILD---NENAAETTFEDTSKVTVEMTPIYSIDPKRQ 246
Query: 267 ------KGKAACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLC 318
K A TKF R ++ ++V C+PITGRTHQIR+HL G+PI ND +Y C
Sbjct: 247 FPVGLSASKDAITKFYPIRYFSHADETVVACKPITGRTHQIRIHLARLGHPIVNDSVY-C 305
Query: 319 EHVT 322
H+T
Sbjct: 306 SHIT 309
>gi|323337472|gb|EGA78720.1| Pus6p [Saccharomyces cerevisiae Vin13]
Length = 404
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 162/304 (53%), Gaps = 43/304 (14%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
++G R V+PYY + VK RW GK ++D+ EFK RP YY+ ++ ++ + VP
Sbjct: 12 QNGLRKVRPYYNRRSAFVKGRWLGKLLIDVLVSEFKLRPRAYYLDQIRKXTYRLIRDGVP 71
Query: 116 V------SYTVKSSQKISHFLHRHEPPVMAW---------------DVSILQKEPDVLTV 154
+ + +K+ + H+HEPPV W +I+ ++ +L +
Sbjct: 72 LVPDHLMTTIIKNHDVLETTTHKHEPPVKQWCSQEVEAEDLPGRIAGFNIVFEDESILVI 131
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQ 214
KP +PVHP GQ+ +NT+ +L+ H + L P +RLD++ SGLLILA+N+ A ++
Sbjct: 132 DKPSGIPVHPTGQFYQNTITELLKL-HGVDAL-PCYRLDKITSGLLILAKNSQSAGEIQK 189
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL-------- 266
I + +IK Y+ARV G FP E ++D N NA+ S ++ TP+
Sbjct: 190 SIRSRDMIKIYLARVKGRFPHSELILD---NENAAETTFEDTSKVTVEMTPIYSIDPKRQ 246
Query: 267 ------KGKAACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLC 318
K A TKF R ++ ++V C+PITGRTHQIR+HL G+PI ND +Y C
Sbjct: 247 FPVGLSASKDAITKFYPIRYFSHADETVVACKPITGRTHQIRIHLARLGHPIVNDSVY-C 305
Query: 319 EHVT 322
H+T
Sbjct: 306 SHIT 309
>gi|170117367|ref|XP_001889871.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164635211|gb|EDQ99522.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 478
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 144/262 (54%), Gaps = 3/262 (1%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G + + PY++ + + K RW G+ ++++ + EF+ R +YY A++ G V+ ++
Sbjct: 14 GLKKIAPYWYPYTTMTKMRWIGRELLEVVSTEFRDRSMEYYRYALESGVTTVNGQIAKPD 73
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSIL--QKEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
++ +I + +HRHEPPV + V +L E + L V KP S+PVH G+Y +NT++
Sbjct: 74 TKLRDGDRIENIVHRHEPPVTSTPVKVLYHDVEREFLVVDKPGSIPVHASGRYYRNTLIE 133
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL + +P +RLDRL SGL+I+ + +A + + G V K Y+ARV G FP
Sbjct: 134 ILVNDFGYKKCYPANRLDRLTSGLMIIPLSPDRARVLTDEFTTGTVRKEYVARVRGRFPA 193
Query: 236 GEQVVDVN-INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITG 294
E V + + + G + + L+ R N S+V CEP+TG
Sbjct: 194 QEIVCEEPLLTVDRQMGLNIVHPEGKVLFIHLQPAKTVFNLIRYDENTNSSVVRCEPLTG 253
Query: 295 RTHQIRVHLQYTGYPIANDMLY 316
R+HQ+RVHLQY G+PIAND +Y
Sbjct: 254 RSHQLRVHLQYLGFPIANDPIY 275
>gi|259146673|emb|CAY79930.1| Pus6p [Saccharomyces cerevisiae EC1118]
Length = 404
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 162/304 (53%), Gaps = 43/304 (14%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
++G R V+PYY + VK RW GK ++D+ EFK RP YY+ ++ ++ + VP
Sbjct: 12 QNGLRKVRPYYNRRSAFVKGRWLGKLLIDVLVSEFKLRPRAYYLDQIRKDTYRLIRDGVP 71
Query: 116 V------SYTVKSSQKISHFLHRHEPPVMAW---------------DVSILQKEPDVLTV 154
+ + +K+ + H+HEPPV W +I+ ++ +L +
Sbjct: 72 LVPDHLMTTIIKNHDVLETTTHKHEPPVEQWCSQEVEAEDLPGRIAGFNIVFEDESILVI 131
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQ 214
KP +PVHP GQ+ +NT+ +L+ H + L P +RLD++ SGLLILA+N+ A ++
Sbjct: 132 DKPSGIPVHPTGQFYQNTITELLKL-HGVDAL-PCYRLDKITSGLLILAKNSQSAGEIQK 189
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL-------- 266
I + +IK Y+ARV G FP E ++D N NA+ S ++ TP+
Sbjct: 190 SIRSRDMIKIYLARVKGRFPHSELILD---NENAAETTFEDTSKVTVEMTPIYSIDPKRQ 246
Query: 267 ------KGKAACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLC 318
K A TKF R ++ ++V C+PITGRTHQIR+HL G+PI ND +Y C
Sbjct: 247 FPVGLSASKDAITKFYPIRYFSHADETVVACKPITGRTHQIRIHLARLGHPIVNDSVY-C 305
Query: 319 EHVT 322
H+T
Sbjct: 306 SHIT 309
>gi|307109346|gb|EFN57584.1| hypothetical protein CHLNCDRAFT_16942, partial [Chlorella
variabilis]
Length = 275
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 116/277 (41%), Positives = 154/277 (55%), Gaps = 24/277 (8%)
Query: 62 VKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVK 121
VKPY+FEF +++ RW G+ I+D+F EF R YY A+ GR++V+ V +K
Sbjct: 1 VKPYHFEFCCNMRQRWFGQNIIDIFTREFPARDRQYYQQALADGRLRVEGCQVTAETPLK 60
Query: 122 SSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH 181
Q I HF+HRHE PV A + ++ + D + VCKP +PVH GQYRKNTV+GIL AEH
Sbjct: 61 DGQCIRHFIHRHEAPVPAGSIQVVGQSEDAVAVCKPHGMPVHVAGQYRKNTVLGILTAEH 120
Query: 182 DLAPL----------------FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRY 225
P+ PV RLD+ VSGLL+ AR+A+ A +IE V K Y
Sbjct: 121 TRLPVSPCLIRSDCSHHAPAPLPVCRLDKPVSGLLLFARSAAAAAALCGRIEGHAVEKVY 180
Query: 226 IARVNGVFPEGEQVVDVNI--NYNASAGRSTAESGDSLGDTPLKG--KAACTKF--TRIS 279
+ARV G FP + A + A + + P KG K A T+F ++
Sbjct: 181 VARVLGRFPATGVCTACKLRKQAKAERAAAAAAAAAAAAKKPSKGPAKPARTEFRLLAVA 240
Query: 280 TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+G S+V EP TGRTHQIRVHLQ+ G+PIAND Y
Sbjct: 241 EDGLTSVV--EPRTGRTHQIRVHLQHLGHPIANDTQY 275
>gi|328857444|gb|EGG06560.1| hypothetical protein MELLADRAFT_116466 [Melampsora larici-populina
98AG31]
Length = 486
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 172/314 (54%), Gaps = 46/314 (14%)
Query: 49 VKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQ 108
VK ++ F G R VKPY F++ ++ K RW G++++D+F+ +F+ R +YY AV G I+
Sbjct: 18 VKPEWYFEKGLRKVKPYLFKYSTYAKERWRGRSVIDVFSSDFRDRSPEYYAQAVASGVIK 77
Query: 109 VDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKE--PDVLTVCKPPSVPVHPCG 166
++ + + +++ I++ LHRHEPPV+ V IL ++ +L V KP S+P+HP G
Sbjct: 78 INGKTITQDLIIRNGDLITNTLHRHEPPVIGDPVRILHRDDVKGLLVVEKPGSMPIHPTG 137
Query: 167 QYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLI--LARNASK--ADLFRQQIEAGKVI 222
+Y NT++ IL+ ++DL + +RLDRL SG++I L AS+ + F Q+ G V
Sbjct: 138 RYNYNTLLSILKFDYDLPLVHTSNRLDRLTSGVMICALTIEASRGLSAYFGQE---GAVK 194
Query: 223 KRYIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRIS 279
K YIAR G FP+ E V + + I+ E G PL G+
Sbjct: 195 KEYIARCRGNFPDEEIVCEEPLLTIDRQVGLNVVHPE-----GKLPLLGR---------- 239
Query: 280 TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHHS 339
PITGR+HQIRVHLQ+ G+PI ND++Y C +V G + +S S
Sbjct: 240 -----------PITGRSHQIRVHLQFLGHPILNDVIY-CSNVAW--GPEGGKGGIFS--S 283
Query: 340 PP---PVSSDKSES 350
P P SS+K E+
Sbjct: 284 PTDQRPKSSEKEEA 297
>gi|56755719|gb|AAW26038.1| SJCHGC01065 protein [Schistosoma japonicum]
Length = 438
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 110/342 (32%), Positives = 163/342 (47%), Gaps = 29/342 (8%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
DY R V PY F F ++ K RW + + D+ EF D G I V+
Sbjct: 42 DYYIDGIFRKVFPYNFIFKAYAKRRWINRKLYDVLQSEFSHMSNDVIAQKCNSGDILVNG 101
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V Y + + +S +HRHE PV+ + + D+L + KPPS+P+HPCG+Y N
Sbjct: 102 ARVDPDYVLNDNDLLSQQVHRHEFPVLNLPIEFIHDSHDMLVINKPPSIPIHPCGRYTLN 161
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
++ IL ++ L PL HRLDR+ SGLL++A++ + + QI + +V K YI V+G
Sbjct: 162 SITHILAKDYGLRPLRFTHRLDRMTSGLLLIAKDYDTSVRLQSQIASKEVTKHYICHVDG 221
Query: 232 VFP-------EGEQVVDVNINYNASAGRSTAESG-DSLGDTPLKGKAACTKFTRISTNGT 283
FP G ++ + + + G + + G ++ GK A T F R++ N
Sbjct: 222 CFPTEPIDHCTGFEINNGVVVCSQPVGPISPKMGIHAVLPESAGGKPARTHFLRLNYNSV 281
Query: 284 --HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY-----------------LCEHVTHR 324
S+V+C TGRTHQIR+H QY GYPI D +Y + V R
Sbjct: 282 TNTSLVICRLFTGRTHQIRIHTQYLGYPIVEDPIYNSTDWGELKGKYADYGITLDEVIKR 341
Query: 325 EGMSADRAAAYSHHSPPPV--SSDKSESSSEDFSIDPMCTNC 364
G S DR + + S D S+ SIDP+C +C
Sbjct: 342 LGNSRDRVKYLIDETSEKLENSLDPCISARLQSSIDPLCPDC 383
>gi|58266206|ref|XP_570259.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134111034|ref|XP_775981.1| hypothetical protein CNBD3880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258647|gb|EAL21334.1| hypothetical protein CNBD3880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226492|gb|AAW42952.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 520
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 153/264 (57%), Gaps = 17/264 (6%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +K Y++ + + VK RW G+ ++++ EF+ R +YY A++ G +V+ +
Sbjct: 21 RYIKSYWWPYKTFVKQRWIGRQLLEVITTEFRDRSMEYYRHALESGVTRVNGVVAQPDLI 80
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQ--KEPDVLTVCKPPSVPVHPCGQYRKNTVVGIL 177
+++ +I + +HRHEPPV + +L +E + + + KP S+PVH G+Y K+TV+ ++
Sbjct: 81 LRNGDRIDNTVHRHEPPVTNDPILVLHIDREREFIVISKPGSLPVHAAGRYFKHTVLEMM 140
Query: 178 QAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237
++++ L + V+RLDRL SGL+ILA + A ++ GKV K Y+ARV G FP+ E
Sbjct: 141 ESDYGLK-CYSVNRLDRLTSGLMILALSGKAASKLAREFVEGKVKKEYVARVKGKFPKEE 199
Query: 238 QVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPI 292
VD + ++ T E K + A T F RI+ + S+V C P
Sbjct: 200 ITVDKPMMTVDRQMGLVIITPEG---------KSQDAVTIFNRIAYDPVRDQSVVRCRPQ 250
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGRTHQIRVHLQY G+PIAND LY
Sbjct: 251 TGRTHQIRVHLQYLGHPIANDPLY 274
>gi|412990015|emb|CCO20657.1| ribosomal large subunit pseudouridine synthase D [Bathycoccus
prasinos]
Length = 426
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 118/301 (39%), Positives = 167/301 (55%), Gaps = 41/301 (13%)
Query: 54 IFRDGRRNVKPYYFEFISHVKNRWAGKT------IVDLFAEEFKGRPYDYYVSAVKCGRI 107
+F++G R KPY F+FI++VK RW IVD+F +EF P +YY A K GR+
Sbjct: 25 VFQNGLRLSKPYAFDFIANVKRRWCEVENEEENNIVDIFHKEFPNLPREYYAQAFKDGRL 84
Query: 108 QV-DEEMVPVSYT-----------------VKSSQKISHFLHRHEPPVMAWD--VSILQK 147
+V D+ VS + + Q + H +H+HEPPV+ + + IL++
Sbjct: 85 RVEDKNASSVSRSHKKKRKKEDDEKEYFPALVPGQTVRHLVHKHEPPVICSENEIEILEE 144
Query: 148 EPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE----------HDLAPLFPVHRLDRLVS 197
D++ V KP +VPVHP GQYR N+VV IL+ PL P+HRLDR VS
Sbjct: 145 VDDIVAVRKPATVPVHPTGQYRNNSVVEILRQRLPEMNDKKNTSPPPPLLPLHRLDRNVS 204
Query: 198 GLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAES 257
GLL++A+ + A + I + KV K Y+ARV G+F + E +V + + +T S
Sbjct: 205 GLLLMAKTSKAAKIATDLIVSNKVRKEYVARVKGLFSK-ETTCEVPLGFCGKTHVATWPS 263
Query: 258 GDSLGDTPLKGKAACTKFTRIS--TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
DS +PL K+A T FT I + S+V C P TGRTHQIR HL+ G+PIAND++
Sbjct: 264 -DSSTPSPLY-KSAKTSFTLIKHFSELDESLVRCVPETGRTHQIRAHLKILGHPIANDVV 321
Query: 316 Y 316
Y
Sbjct: 322 Y 322
>gi|403414582|emb|CCM01282.1| predicted protein [Fibroporia radiculosa]
Length = 548
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 151/263 (57%), Gaps = 13/263 (4%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G + + Y++ + + K RW G+ I+++ + EF+ R +YY A++ G V+ ++
Sbjct: 21 GLKKIPSYWYPYTTMAKARWLGREILEVVSTEFRDRSMEYYRYALESGVTTVNGKVAKPD 80
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSIL--QKEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+++ +I + +HRHEPPV + V I+ KE + + + KP S+PVH G+Y +N++V
Sbjct: 81 TIIQNGDRIENVVHRHEPPVTSTPVRIILEDKEREFIVINKPGSIPVHASGRYFRNSLVE 140
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL+ + ++ ++RLDRL SGL+I+ +AS+A+ Q+ AG + K YIAR G FPE
Sbjct: 141 ILKNDFGYQKVYTINRLDRLTSGLMIIPLSASRANTLTQEFAAGTIRKEYIARCKGEFPE 200
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPIT 293
+ + + G + +GK A T F R+ + S+V C P+T
Sbjct: 201 EVTCEEPLLTVDRQMGLNIVHP---------EGKPAKTIFKRMHYDSATDTSVVHCRPLT 251
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GR+HQIRVHLQY G+ IAND +Y
Sbjct: 252 GRSHQIRVHLQYLGHSIANDPIY 274
>gi|300175850|emb|CBK21846.2| Pseudouridylate synthase [Blastocystis hominis]
Length = 273
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 149/264 (56%), Gaps = 7/264 (2%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R V PY ++ + K RW GK I+D+F++EF +YY A++ GRI+V+ E V +
Sbjct: 2 RCVVPYIYKHETFCKQRWFGKKIIDVFSKEFGAYSPEYYEEAIRNGRIRVNGERVTRDHI 61
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+K+ +I+H +HRHEPPV V IL + D++ V KP ++PVHPCG YR N++ IL+
Sbjct: 62 LKNGDRITHTVHRHEPPVPYSPVVILGETDDIIAVNKPAALPVHPCGAYRYNSLETILRK 121
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
E+ L+ + +HRLDR+ SG+++LA+ A +Q+ G K Y+A G E ++
Sbjct: 122 ENKLSEFYFIHRLDRVTSGVMLLAKRKDIASKLSEQLVKGGFHKVYLAEAEGNCFEKPEI 181
Query: 240 VDVNINYN--ASAGRSTAESGDSLGDTPLKGKAACTKFTRI-----STNGTHSIVLCEPI 292
V + R+ A G + K +T + S +++ C PI
Sbjct: 182 PGVFYTQQNGIAVDRNIAVVSQKEGIFKVDEKEGKPAYTYLFPLYYSKQSNTTLMECVPI 241
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGRTHQIR+HL+Y G+PI +D+ Y
Sbjct: 242 TGRTHQIRLHLKYIGHPIDDDVNY 265
>gi|406694512|gb|EKC97837.1| hypothetical protein A1Q2_07840 [Trichosporon asahii var. asahii
CBS 8904]
Length = 596
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 163/296 (55%), Gaps = 36/296 (12%)
Query: 34 SNNMEIVWQTPANPPVKEDYIFRDGR----RNVKPYYFEFISHVKNRWAGKTIVDLFAEE 89
SN ++ V + + P + + + G R ++PY++ + + K RW G+ ++++ + E
Sbjct: 21 SNELDAVVKNGTDGPKRTEKTYPQGMHPRLRYLQPYWWPYRTFCKQRWIGRQLLEVISTE 80
Query: 90 FKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQ--K 147
F+ R DYY+ + G + IS+ +HRHEPP+ V +L K
Sbjct: 81 FRDRSVDYYL---RLGWLA----------------DISNTVHRHEPPITNDPVLVLHIDK 121
Query: 148 EPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNAS 207
E D + V KP S+PVH G+Y K+T++ +L+ ++ + F V+RLDRL SGL+ILA +
Sbjct: 122 EKDFVVVSKPGSMPVHAAGRYFKHTLLELLKTDYGIN-AFAVNRLDRLTSGLMILALSGK 180
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ + + G V K YIARV G FPEG+ VVD + S R L +
Sbjct: 181 TSSRLANEFKEGTVKKEYIARVRGKFPEGDIVVDQPL---LSVDRQMG-----LVIVAPQ 232
Query: 268 GKAACTKFTRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
GK + T FTR+S + S+V C+P TGRTHQ+RVHLQ+ GYPIAND LY E +
Sbjct: 233 GKESKTIFTRMSYDEKRDQSVVHCKPQTGRTHQLRVHLQWLGYPIANDPLYSQEEI 288
>gi|425777994|gb|EKV16141.1| DRAP deaminase (Rib2), putative [Penicillium digitatum Pd1]
gi|425780630|gb|EKV18636.1| DRAP deaminase (Rib2), putative [Penicillium digitatum PHI26]
Length = 541
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 164/308 (53%), Gaps = 42/308 (13%)
Query: 40 VWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYV 99
V TP +P Y G R V PY++ + ++ K RW G+ +V++F EF+ R +YY
Sbjct: 25 VLVTPCDP-WPAPYYLEGGFRRVTPYHYTYNTNCKERWRGRQVVEVFTSEFRDRKPEYYR 83
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPS 159
A++ G + V+ +K+ Q ISH LHRHEPPV + + I+ ++ D++ + KP
Sbjct: 84 KALEDGLVHVNGVTARPETILKNGQVISHTLHRHEPPVTSLPIGIIFEDDDLIVIDKPAG 143
Query: 160 VPVHPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILARNASKADLFRQQIEA 218
VPVH G+Y NTVV IL++E L P +RLDRL SG++ + ++A AD ++A
Sbjct: 144 VPVHAAGRYYFNTVVEILRSERSSEWLPRPCNRLDRLTSGIMFIGKHAKAADKMAAALKA 203
Query: 219 GKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK--GKAACTKFT 276
V K Y+ARV G FP+G V D I + LG ++ GK A TKF
Sbjct: 204 RSVQKEYVARVKGKFPDGVVVCDQPI----------MQVSPKLGLNRVRATGKEATTKFR 253
Query: 277 RI------------STNGT----------------HSIVLCEPITGRTHQIRVHLQYTGY 308
R+ S +G +SIV C P+TGRTHQIRVHLQ+ G+
Sbjct: 254 RLAYYPPEVAKETDSASGDERPATPAAELANESEGYSIVHCFPLTGRTHQIRVHLQFLGH 313
Query: 309 PIANDMLY 316
PI+ND +Y
Sbjct: 314 PISNDPIY 321
>gi|303389291|ref|XP_003072878.1| pseudouridylate synthase [Encephalitozoon intestinalis ATCC 50506]
gi|303302021|gb|ADM11518.1| pseudouridylate synthase [Encephalitozoon intestinalis ATCC 50506]
Length = 317
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 150/253 (59%), Gaps = 22/253 (8%)
Query: 65 YYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ 124
Y+F F ++VK RW K ++D+ A EF+ R DY++SA++CG + V+EE+V ++
Sbjct: 8 YFFTFRTNVKGRWCEKPVIDVLASEFRTRTKDYFLSALECGAVTVNEEIVEPGRILRIGD 67
Query: 125 KISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLA 184
I H +H HEP ++ I+++E D + V KPP +P HP G YR+ +V L + +A
Sbjct: 68 VIRHTVHIHEPAHP--EIDIIREEQDYVVVNKPPGMPCHPTGGYREYSVTRALFGDKKVA 125
Query: 185 PLFPVHRLDRLVSGLLILA-RNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVN 243
++RLD VSG+LI+A +N SK EA K+ Y+A+V G+FP+ +DV+
Sbjct: 126 ---CINRLDMPVSGVLIVAVKNHSKC--LEAIREARKI---YLAKVQGLFPDS---IDVD 174
Query: 244 INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHL 303
+ + G+ S + GKA T F R++ HS+V C PITGRTHQIR+HL
Sbjct: 175 KKISCAEGKHRYVSDE--------GKACLTLFRRLAYKDGHSLVECRPITGRTHQIRIHL 226
Query: 304 QYTGYPIANDMLY 316
Q G+PI ND++Y
Sbjct: 227 QSIGFPIVNDIMY 239
>gi|393222867|gb|EJD08351.1| pseudouridine synthase [Fomitiporia mediterranea MF3/22]
Length = 586
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 151/265 (56%), Gaps = 12/265 (4%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
R G + + Y++ + ++ K RW + I+++ + EF+ R +YY A++ G ++ E+
Sbjct: 6 RPGLKKIPAYWYPYRTNAKARWFDREILEVISTEFRDRSVEYYRYALQSGVTTINGEIAR 65
Query: 116 VSYTVKSSQKISHFLHRHEPPVMAWDVSILQK--EPDVLTVCKPPSVPVHPCGQYRKNTV 173
V++ + + +HRHEPPV + V IL E + + + KP S+PVH G+Y KN++
Sbjct: 66 PGTLVRNGDTLENIVHRHEPPVTSTPVEILHHDIEREFIVINKPGSIPVHAAGRYFKNSL 125
Query: 174 VGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVF 233
V IL+ + + ++ V+RLDRL SGL+I+A ++ +A + +G + K Y+ARV G F
Sbjct: 126 VEILKDDFGFSNVYTVNRLDRLTSGLMIIALSSERARSLTSEFTSGTIQKEYVARVRGEF 185
Query: 234 PEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEP 291
P E + + T + L +GK A T F R+ + S+V C P
Sbjct: 186 PAEEITCEEPL--------LTVDRQMGLNIVHPEGKEAKTMFKRMHYDKITDTSVVHCRP 237
Query: 292 ITGRTHQIRVHLQYTGYPIANDMLY 316
ITGR+HQIRVHLQ+ G+PIAND +Y
Sbjct: 238 ITGRSHQIRVHLQFLGHPIANDAVY 262
>gi|365760569|gb|EHN02281.1| Pus6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 400
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 161/304 (52%), Gaps = 43/304 (14%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
++G R V+PYY + + VK RW GK+++D+ A EF+ R YY++ ++ G ++ + VP
Sbjct: 12 QNGLRKVRPYYNKRSAFVKGRWLGKSLIDVLATEFRLRSRAYYLAQIEKGTYKLIRDGVP 71
Query: 116 V------SYTVKSSQKISHFLHRHEPPVMAW---------------DVSILQKEPDVLTV 154
+ + T+K+ + H+HEPPV W I+ ++ +L +
Sbjct: 72 LVPSHLMTVTIKNHDVLETTAHKHEPPVKQWCSQSMEADDSAGRIAGFDIVFEDETILVI 131
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQ 214
KP +P+HP GQ+ +NT+ +L++ + P +RLD++ SGLLILA+N A ++
Sbjct: 132 DKPSGIPIHPTGQFYQNTITEVLKSHG--VNVLPCYRLDKITSGLLILAKNTQSAGEIQK 189
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL-------- 266
I + + K Y+ARV G FP E +++ N NA S ++ +P+
Sbjct: 190 NIRSRDMSKYYLARVKGKFPHSESILN---NDNAVDSIFADTSNITIESSPIYSIDPKRQ 246
Query: 267 ------KGKAACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLC 318
+ A TKF R ++ ++V C+P TGRTHQIR+HL G+PI ND +Y C
Sbjct: 247 FPAGLSASRDAITKFYPIRYISHADETVVACKPTTGRTHQIRIHLARLGHPIVNDSVY-C 305
Query: 319 EHVT 322
HVT
Sbjct: 306 SHVT 309
>gi|167375438|ref|XP_001733644.1| ribosomal pseudouridine synthase [Entamoeba dispar SAW760]
gi|165905188|gb|EDR30257.1| ribosomal pseudouridine synthase, putative [Entamoeba dispar
SAW760]
Length = 402
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 152/273 (55%), Gaps = 22/273 (8%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
+Y F +G R V PY++ F + K RW G+TIVD+F EFK + + ++ G I+++
Sbjct: 56 NYYFENGLRRVLPYFYIFKVNAKGRWIGRTIVDVFVNEFKLCNEETTIKKIEKGLIKINN 115
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
+++ S + +I H +HRHEPPV ++I+++ D + + KP SVPVHPCG+YR N
Sbjct: 116 KLIDPSTIIHHHDEIEHQVHRHEPPVYCDKLTIVKETNDFIAIDKPSSVPVHPCGRYRHN 175
Query: 172 TVVGILQAEHDLAP-LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
TV+ IL H+ P L PVHRLDR+ SG+L+LA+ A F+ + K K YI RV
Sbjct: 176 TVIFILS--HEGYPNLRPVHRLDRMTSGILLLAKTIQAAREFQNHMVIKK--KEYICRVR 231
Query: 231 GVFPEGEQVVDVNINYNASAGRSTAESGD---SLGDTPLKGKAACTKFTRI----STNGT 283
G E+ V + GR + S+ GK C++F + TN T
Sbjct: 232 GKL---EKTV-----VTSKIGRKRIDDKKIHVSVNKIEEDGKECCSEFNPLFYDEKTNTT 283
Query: 284 HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
++ L +GRTHQ+RVHLQ +PI ND +Y
Sbjct: 284 VAVALLG--SGRTHQLRVHLQSIHHPIVNDPIY 314
>gi|401884986|gb|EJT49118.1| hypothetical protein A1Q1_01767 [Trichosporon asahii var. asahii
CBS 2479]
Length = 595
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 150/266 (56%), Gaps = 32/266 (12%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R ++PY++ + + K RW G+ ++++ + EF+ R DYY+ + C
Sbjct: 51 RYLQPYWWPYRTFCKQRWIGRQLLEVISTEFRDRSVDYYLR-LGC--------------- 94
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQ--KEPDVLTVCKPPSVPVHPCGQYRKNTVVGIL 177
IS+ +HRHEPP+ V +L KE D + V KP S+PVH G+Y K+T++ +L
Sbjct: 95 ---LADISNTVHRHEPPITNDPVLVLHIDKEKDFVVVSKPGSMPVHAAGRYFKHTLLELL 151
Query: 178 QAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237
+ ++ + F V+RLDRL SGL+ILA + + + + G V K YIARV G FPEG+
Sbjct: 152 KTDYGIN-AFAVNRLDRLTSGLMILALSGKTSSRLANEFKEGTVKKEYIARVRGKFPEGD 210
Query: 238 QVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPITGR 295
VVD + S R L +GK + T FTR+S + S+V C+P TGR
Sbjct: 211 IVVDQPL---LSVDRQMG-----LVIVAPQGKESKTIFTRMSYDEKRDQSVVHCKPQTGR 262
Query: 296 THQIRVHLQYTGYPIANDMLYLCEHV 321
THQ+RVHLQ+ GYPIAND LY E +
Sbjct: 263 THQLRVHLQWLGYPIANDPLYSQEEI 288
>gi|452825308|gb|EME32305.1| pseudouridylate synthase [Galdieria sulphuraria]
Length = 366
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 104/275 (37%), Positives = 156/275 (56%), Gaps = 12/275 (4%)
Query: 49 VKEDYIF-RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRI 107
+ ED+ F ++ R V PY FEF + K RW G++I+++F+ EF Y+ + GR+
Sbjct: 28 ISEDHFFVKNNCRYVIPYPFEFRVNTKQRWFGRSILEVFSWEFPHGSQQYWERELAEGRL 87
Query: 108 QVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQ 167
V+ + ++ +++ ++H +HRHE A I+ + D + V KP ++PVHPCG
Sbjct: 88 LVNGHKISPNFILQNGHVVTHVVHRHEAATTAEAAEIIYMDADKVVVNKPANLPVHPCGN 147
Query: 168 YRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIA 227
YRKN+++ L E DL L +HRLDR SGL+I ARN + A ++ +V K Y+A
Sbjct: 148 YRKNSLLARLCVEQDLKNLHVIHRLDRQTSGLVIFARNKTYAKFLSEKFHERQVHKTYVA 207
Query: 228 RVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HS 285
RV+G FP V D ++++A D +G GK A T F + N S
Sbjct: 208 RVHGQFPSETVVCDQKLHFDAH---------DCVGSCADSGKEAMTTFRLMFYNSQLEQS 258
Query: 286 IVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEH 320
+V C+P TGRTHQIR+HLQ+ G+PI ND LY E+
Sbjct: 259 LVECKPHTGRTHQIRLHLQHLGHPIVNDPLYGFEY 293
>gi|401625551|gb|EJS43551.1| pus6p [Saccharomyces arboricola H-6]
Length = 404
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 165/301 (54%), Gaps = 37/301 (12%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
++G R V+PYY + + VK RW GK +VD+ A EFK R DYY+ ++ G ++ + VP
Sbjct: 12 QNGLRKVRPYYNKRSAFVKGRWLGKPLVDILANEFKLRSRDYYLEQIEKGTYKLIRDGVP 71
Query: 116 ------VSYTVKSSQKISHFLHRHEPPVMAW---------------DVSILQKEPDVLTV 154
++ T+K+ + H+HEPPV W ++ ++ +L +
Sbjct: 72 LAANRLLATTIKNHDILETTTHKHEPPVKQWCSQAIEADDSAGRIAGFKVVFEDESILVI 131
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQ 214
KP VPVHP GQ+ +NT+ +L++ H + L P +RLD++ SGLLILA+N+ A ++
Sbjct: 132 DKPCGVPVHPTGQFYQNTITELLKS-HGVNAL-PCYRLDKITSGLLILAKNSQSAGEIQK 189
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVD----VNINY----NASAGRSTAESGDSLGDTPL 266
I + + K Y+ARV G FP + V++ VN+ + N + S S D P+
Sbjct: 190 NIRSRDMSKFYLARVRGKFPHSDSVLNNEKAVNVIFQDSSNTTVEMSPIYSIDPKRQFPV 249
Query: 267 ---KGKAACTKFTRIST--NGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
+ A T+F I + +++ C+PITGRTHQIR+HL G+PI ND +Y C H+
Sbjct: 250 GLSASRDAITQFYPIMYIPHVNETVIACKPITGRTHQIRIHLARLGHPIVNDSVY-CLHI 308
Query: 322 T 322
+
Sbjct: 309 S 309
>gi|365985862|ref|XP_003669763.1| hypothetical protein NDAI_0D02060 [Naumovozyma dairenensis CBS 421]
gi|343768532|emb|CCD24520.1| hypothetical protein NDAI_0D02060 [Naumovozyma dairenensis CBS 421]
Length = 406
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 159/301 (52%), Gaps = 42/301 (13%)
Query: 55 FRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV 114
F +G R ++PYY S VK RW GK +VD+ +EF+ P ++YVS + ++ + +
Sbjct: 7 FANGLRKLRPYYNTRTSFVKGRWLGKPLVDVLTKEFRLYPREHYVSEINKNHFKIIRDDI 66
Query: 115 PVSYT------VKSSQKISHFLHRHEPPVMAW---------------DVSILQKEPDVLT 153
P+ T +K+ I H+HEPPV W I+ ++ D+L
Sbjct: 67 PLKPTEVFESAIKNKDIIETISHKHEPPVRQWCNEQEEAEDNKNRIAGFDIVHEDADILV 126
Query: 154 VCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFR 213
+ KP +P+HP GQ+ +NT+ IL++ HD P+ P +RLD++ SGLLI+A+N A +
Sbjct: 127 INKPNGIPIHPTGQFYQNTITEILKS-HD-KPVLPCYRLDKVTSGLLIMAKNKIAAGKVQ 184
Query: 214 QQIEAGKVIKRYIARVNGVFP---EGEQVV-----DVNINYNASAGRSTAESGDSLGDTP 265
+I A + K Y+ARV G FP E ++ D +I ++ S +T +S P
Sbjct: 185 SKIRARDMSKLYLARVQGKFPNVPERSMIINNTINDASIMFDDSTIVTTVDS-HVYTIEP 243
Query: 266 LK--------GKAACTKFTRIST--NGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
K + A T F +S S+V+C+P+TGRTHQIR+HL G+PI ND +
Sbjct: 244 KKQFPAGLSMSREAITLFYPLSYLPKENQSVVVCKPLTGRTHQIRIHLARLGFPIVNDSM 303
Query: 316 Y 316
Y
Sbjct: 304 Y 304
>gi|312084667|ref|XP_003144368.1| hypothetical protein LOAG_08790 [Loa loa]
gi|307760466|gb|EFO19700.1| hypothetical protein LOAG_08790 [Loa loa]
Length = 379
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 138/236 (58%), Gaps = 13/236 (5%)
Query: 85 LFAEEFKGRPYDYYVSAVKCGRIQVD-EEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS 143
FAEEF Y +A K GRI V+ +M V+Y V+ + I H HRHE P++ +
Sbjct: 15 FFAEEFVSLSPHYPAAACKLGRIWVNCNQMTNVNYIVQHNDSIEHIGHRHEHPILDHYIR 74
Query: 144 ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILA 203
++ + +++ V KP S+PVHPCG+Y +TV+G+L+ + L L VHRLDR SG+L+ A
Sbjct: 75 VIDNDNNIIVVDKPASMPVHPCGRYCVHTVLGMLREQRGLRDLRVVHRLDRTTSGVLLFA 134
Query: 204 RNASKADLFRQQIEAGKVI-KRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLG 262
RN+ ++ + G+V K Y+ +V GVFP ++++ R S+G
Sbjct: 135 RNSETDTKLKKMLRVGEVWHKEYLCKVEGVFPADKEII---------CDRPIGPLVLSMG 185
Query: 263 DTPLK--GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
++ GK A ++F R+ T+G SIV C TGRTHQIRVHLQY GYPI +D +Y
Sbjct: 186 IQCIRDDGKCARSRFWRLWTDGQTSIVRCMLETGRTHQIRVHLQYLGYPIVDDYIY 241
>gi|401840124|gb|EJT43033.1| PUS6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 400
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 162/304 (53%), Gaps = 43/304 (14%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
++G R V+PYY + + VK RW GK+++D+ A EF+ R YY++ ++ G ++ + VP
Sbjct: 12 QNGLRKVRPYYNKRSAFVKGRWLGKSLIDVLATEFRLRSRAYYLAQIEKGTYKLIRDGVP 71
Query: 116 V------SYTVKSSQKISHFLHRHEPPVMAW---------------DVSILQKEPDVLTV 154
+ + T+K+ + H+HEPPV W I+ ++ +L +
Sbjct: 72 LVPSHLMTVTIKNHDVLETTAHKHEPPVKQWCSQSMEADDSAGRIAGFDIVFEDETILVI 131
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQ 214
KP +P+HP GQ+ +NT+ +L++ + P +RLD++ SGLLILA+N+ A ++
Sbjct: 132 DKPSGIPIHPTGQFYQNTITEVLKSHG--VNVLPCYRLDKITSGLLILAKNSQSAGEIQK 189
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL-------- 266
I + + K Y+ARV G FP E +++ N NA S ++ +P+
Sbjct: 190 NIRSRDMSKYYLARVKGKFPHSESILN---NDNAVDSIFADTSNITIESSPIYSIDPKRQ 246
Query: 267 ------KGKAACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLC 318
+ A TKF R ++ ++V C+P TGRTHQIR+HL G+PI ND +Y C
Sbjct: 247 FPAGLSASRDAITKFYPIRYISHADETVVACKPTTGRTHQIRIHLARLGHPIVNDSVY-C 305
Query: 319 EHVT 322
+VT
Sbjct: 306 SYVT 309
>gi|336385007|gb|EGO26154.1| hypothetical protein SERLADRAFT_462897 [Serpula lacrymans var.
lacrymans S7.9]
Length = 427
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 175/327 (53%), Gaps = 23/327 (7%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G + + PY++ + + K RW + I+++ + EF+ R +YY A++ G ++ ++
Sbjct: 18 GLKKIPPYWYPYTTMAKMRWLDREILEVVSTEFRDRSMEYYRYALESGVTTINGKVAKPD 77
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQKEPD--VLTVCKPPSVPVHPCGQYRKNTVVG 175
+++ +I + +HRHEPPV + V +L ++ + + + KP S+PVH G+Y ++++V
Sbjct: 78 TVIRNGDRIENVVHRHEPPVTSSPVKVLLQDDERGFIVIDKPGSIPVHASGRYFRHSLVE 137
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL+ E ++ ++RLDRL SGL+I+ ++ A ++ AG V K Y+AR G FP
Sbjct: 138 ILKNEFGYKKVYTINRLDRLTSGLMIIPLSSECAQAMSKEFMAGTVRKEYVARCRGKFPA 197
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACT--KFTRISTNGTHSIVLCEPIT 293
E + + T + L +GK A T K R N S++ C+P+T
Sbjct: 198 DELTCEEPL--------LTVDRQMGLNIVHPEGKPAQTIFKLIRYDENTNTSVIRCQPLT 249
Query: 294 GRTHQIRVHLQYTGYPIANDMLYLCEHV----THREGMSADRAAAYSHHSPPP-----VS 344
GR+HQIRVHLQ+ G+PIAND +Y + R G+ + S +PPP +S
Sbjct: 250 GRSHQIRVHLQFLGFPIANDPIYSETKIWGPNLGRGGVDVVPSEERSAPAPPPHLHSEIS 309
Query: 345 SDK-SESSSEDFSIDPMCTNCPNLAPK 370
+ S+ +E +IDP + P L P+
Sbjct: 310 PESLSDKITEVENIDP-AVDKPKLLPR 335
>gi|336372261|gb|EGO00600.1| hypothetical protein SERLA73DRAFT_178449 [Serpula lacrymans var.
lacrymans S7.3]
Length = 542
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 177/332 (53%), Gaps = 23/332 (6%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
++ G + + PY++ + + K RW + I+++ + EF+ R +YY A++ G ++ +
Sbjct: 13 FLQTPGLKKIPPYWYPYTTMAKMRWLDREILEVVSTEFRDRSMEYYRYALESGVTTINGK 72
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPD--VLTVCKPPSVPVHPCGQYRK 170
+ +++ +I + +HRHEPPV + V +L ++ + + + KP S+PVH G+Y +
Sbjct: 73 VAKPDTVIRNGDRIENVVHRHEPPVTSSPVKVLLQDDERGFIVIDKPGSIPVHASGRYFR 132
Query: 171 NTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
+++V IL+ E ++ ++RLDRL SGL+I+ ++ A ++ AG V K Y+AR
Sbjct: 133 HSLVEILKNEFGYKKVYTINRLDRLTSGLMIIPLSSECAQAMSKEFMAGTVRKEYVARCR 192
Query: 231 GVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACT--KFTRISTNGTHSIVL 288
G FP E + + T + L +GK A T K R N S++
Sbjct: 193 GKFPADELTCEEPL--------LTVDRQMGLNIVHPEGKPAQTIFKLIRYDENTNTSVIR 244
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV----THREGMSADRAAAYSHHSPPP-- 342
C+P+TGR+HQIRVHLQ+ G+PIAND +Y + R G+ + S +PPP
Sbjct: 245 CQPLTGRSHQIRVHLQFLGFPIANDPIYSETKIWGPNLGRGGVDVVPSEERSAPAPPPHL 304
Query: 343 ---VSSDK-SESSSEDFSIDPMCTNCPNLAPK 370
+S + S+ +E +IDP + P L P+
Sbjct: 305 HSEISPESLSDKITEVENIDP-AVDKPKLLPR 335
>gi|145492917|ref|XP_001432455.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399567|emb|CAK65058.1| unnamed protein product [Paramecium tetraurelia]
Length = 469
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 146/277 (52%), Gaps = 14/277 (5%)
Query: 46 NPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCG 105
NPP +Y+ R VKPY + ++VK+RW G T++D +EF+ +YY +A+ G
Sbjct: 4 NPP---EYVKIPPFRFVKPYQHVYKTNVKSRWLGMTLLDAMEKEFRAYNKEYYENAINEG 60
Query: 106 RIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPC 165
+I V+ V Y ++ +I H R EPP++ V I+ ++ + V KPPS+ VH
Sbjct: 61 KITVNSVRVSPEYKLEHGMQIEHATTRVEPPILDLPVDIVFEDDSFVVVSKPPSMIVHTG 120
Query: 166 GQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRY 225
G Y N + IL EH L L+ +HRLDRL SGLLI ++N A F V K Y
Sbjct: 121 GGYHYNCLSAILHFEHGLKDLYVLHRLDRLTSGLLIFSKNRLLAQKFHDANSKLNVQKTY 180
Query: 226 IARVNGVFPEGEQVVDVNIN----YNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN 281
+ARV G F E D+ N Y S + L K+A TKF ++ +
Sbjct: 181 LARVQGNFSE-----DIKENNKPQYCVSMKDAIFACCTEEDAQKLDAKSATTKFEKLWYD 235
Query: 282 --GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
S++ C+PITGRTHQIRVHL G+PI ND+ Y
Sbjct: 236 PISDSSLLECKPITGRTHQIRVHLADLGHPILNDIGY 272
>gi|401826347|ref|XP_003887267.1| putative pseudouridine synthase [Encephalitozoon hellem ATCC 50504]
gi|392998426|gb|AFM98286.1| putative pseudouridine synthase [Encephalitozoon hellem ATCC 50504]
Length = 325
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 150/254 (59%), Gaps = 24/254 (9%)
Query: 65 YYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ 124
Y+F + ++VK RW G+ ++D+ A EF+ R DY++SA++CG I V+EE+V + ++
Sbjct: 8 YFFTYRTNVKGRWCGRPVIDVLASEFRTRTRDYFLSALECGVITVNEEVVEPTRMLRIGD 67
Query: 125 KISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLA 184
I H +H HEP ++ +++ E D + V KP +P HP G YR+ +V L + +A
Sbjct: 68 VIKHTVHIHEPS--HPEIDVIKIEEDYVVVNKPSGIPCHPTGGYREYSVTRALFGDQKVA 125
Query: 185 PLFPVHRLDRLVSGLLILA-RNASKADLFRQQIEAGK-VIKRYIARVNGVFPEGEQVVDV 242
++RLD VSG+LI+A RN SK +E+ + +K YIA+V G+FP+ VVD
Sbjct: 126 ---CINRLDMPVSGVLIIATRNHSKC------LESIRDAVKIYIAKVCGMFPD-SVVVDK 175
Query: 243 NINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVH 302
I R ++ +GKA T F R+ +S+V C+P+TGRTHQIR+H
Sbjct: 176 GIKCTEGKNRHVSD----------EGKACLTLFRRLEYKDGYSLVECKPVTGRTHQIRIH 225
Query: 303 LQYTGYPIANDMLY 316
LQ G+PI ND++Y
Sbjct: 226 LQSIGFPIINDVMY 239
>gi|402216945|gb|EJT97028.1| pseudouridine synthase [Dacryopinax sp. DJM-731 SS1]
Length = 528
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 148/260 (56%), Gaps = 15/260 (5%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHR 132
K RW + I++L + EF+ R +YY A+ G ++ V++ +I + +H+
Sbjct: 2 AKGRWWNREILELISTEFRDRSLEYYRFALAAGVTTINGRRAKPGDIVRNGDRIQNVVHK 61
Query: 133 HEPPVMAWDVSIL----QKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP 188
HEPPV V ++ ++E D++ V KP SVPVH G+Y KN+++ I++++ L ++
Sbjct: 62 HEPPVTG-RVQVISGEKERERDLIVVMKPGSVPVHAAGRYYKNSLLEIIKSDFGLDKVYT 120
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNA 248
V+RLDRL SGL+++A +A +Q KV K Y+ARV G FP+GE V
Sbjct: 121 VNRLDRLTSGLMLIATTPQRASELCKQFAENKVQKSYLARVAGKFPDGETTV-------- 172
Query: 249 SAGRSTAESGDSLGDTPLKGKAACTKFTRISTNG--THSIVLCEPITGRTHQIRVHLQYT 306
S T + L GK + T F +S + S++LC+P TGRTHQIRVHLQ+
Sbjct: 173 SEPLLTIDRQMGLVVVHPSGKPSLTHFRLLSYSARTNTSLLLCQPRTGRTHQIRVHLQWL 232
Query: 307 GYPIANDMLYLCEHVTHREG 326
G+PIAND +Y E+V ++G
Sbjct: 233 GFPIANDPVYRDENVWGKKG 252
>gi|183234131|ref|XP_648993.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|169801245|gb|EAL43600.2| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
gi|449704580|gb|EMD44796.1| ribosomal pseudouridine synthase, putative [Entamoeba histolytica
KU27]
Length = 402
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 147/271 (54%), Gaps = 20/271 (7%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F +G R V PY++ F + K RW G+TIVD+F EFK + + ++ G I+++ +
Sbjct: 57 YYFENGLRRVLPYFYTFKVNAKGRWIGRTIVDVFVHEFKLCNEETTIKKIEKGLIKINNK 116
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
++ S + +I H +HRHEPPV ++I+++ D + + KP S+PVHPCG+YR NT
Sbjct: 117 IIEPSTIIHHHDEIEHQVHRHEPPVYCDKLTIVKETNDFIAIDKPSSIPVHPCGRYRHNT 176
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
V+ IL A L PVHRLDR+ SG+L+LA+ A F+ + K K Y+ RV G
Sbjct: 177 VIFIL-AHEGYTNLRPVHRLDRMTSGILLLAKTIQAAREFQSYMTIKK--KEYLCRVRGR 233
Query: 233 FPEGEQVVDVNINYNASAGRSTAESGD---SLGDTPLKGKAACTKFTRI----STNGTHS 285
+ + GR + S+ + GK ++F + TN T +
Sbjct: 234 LEKT--------TVTSKIGRKRIDDKKIHVSVNEIEEDGKECHSEFNPLFYDEKTNTTVA 285
Query: 286 IVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ L +GRTHQIRVHLQ +PI ND +Y
Sbjct: 286 VALLG--SGRTHQIRVHLQSIHHPIVNDPIY 314
>gi|426378671|ref|XP_004056036.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
isoform 2 [Gorilla gorilla gorilla]
Length = 484
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 124/215 (57%), Gaps = 19/215 (8%)
Query: 110 DEEMVPVSYTVKSS-QKISHFL----HRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHP 164
DE SY + +K + FL HRHEPPV A + +L + DV+ V KP S+PVHP
Sbjct: 125 DEHFAETSYYFEGGLRKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHP 184
Query: 165 CGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKR 224
CG++R NTV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K
Sbjct: 185 CGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKE 244
Query: 225 YIARVNGVFPEGEQVVDVNI---NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN 281
Y+ RV G FP E +I +Y R +GK T F R+S N
Sbjct: 245 YLCRVEGEFPTEEVTCKESILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYN 293
Query: 282 GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
G S+V C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 294 GQSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIY 328
>gi|297696328|ref|XP_002825346.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
isoform 1 [Pongo abelii]
Length = 484
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 125/215 (58%), Gaps = 19/215 (8%)
Query: 110 DEEMVPVSYTVKSS-QKISHFL----HRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHP 164
DE SY ++ +K + FL HRHEPPV A + +L + DV+ V KP S+PVHP
Sbjct: 125 DEHFAETSYYLEGGLRKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHP 184
Query: 165 CGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKR 224
CG++R NTV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K
Sbjct: 185 CGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKE 244
Query: 225 YIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN 281
Y+ RV G FP E + ++Y R +GK T F R+S N
Sbjct: 245 YVCRVEGEFPTEEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYN 293
Query: 282 GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
G S+V C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 294 GQSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIY 328
>gi|123452968|ref|XP_001314542.1| ribosomal large subunit pseudouridine synthases [Trichomonas
vaginalis G3]
gi|121897072|gb|EAY02204.1| ribosomal large subunit pseudouridine synthases, putative
[Trichomonas vaginalis G3]
Length = 353
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 137/257 (53%), Gaps = 14/257 (5%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +KPY F F + K RW G+ ++D+F EF+ + Y ++ G+I V+ +PV Y
Sbjct: 31 RFIKPYDFTFSAGSKERWVGQPLIDVFTNEFRVASREEYEEKIRNGKIIVNGRKIPVDYR 90
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+ I H R E PV + L + + + KP SV V+ G Y N++V L
Sbjct: 91 IGPLDSIKHICTRIEAPVFNKPLLKLGETDNYVAYLKPASVTVNTVGGYFYNSMVKRLPP 150
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
L VHRLDR+ SG+++ A+N + A F Q + KV K YIARV G FP+GE +
Sbjct: 151 H-----LHVVHRLDRVTSGIIVFAKNKAAATNFNQYLVGEKVSKTYIARVIGRFPKGEII 205
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
D + + + R+ TP GK + T F + TNG SIV PITGRTHQI
Sbjct: 206 CDQPLGTDFNLHRTVV--------TP-TGKPSKTIFKLLKTNGKESIVEAHPITGRTHQI 256
Query: 300 RVHLQYTGYPIANDMLY 316
R HLQY GYPI ND +Y
Sbjct: 257 RCHLQYLGYPITNDEMY 273
>gi|194375494|dbj|BAG56692.1| unnamed protein product [Homo sapiens]
Length = 484
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 124/215 (57%), Gaps = 19/215 (8%)
Query: 110 DEEMVPVSYTVKSS-QKISHFL----HRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHP 164
DE SY + +K + FL HRHEPPV A + +L + DV+ V KP S+PVHP
Sbjct: 125 DEHFAETSYYFEGGLRKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHP 184
Query: 165 CGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKR 224
CG++R NTV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K
Sbjct: 185 CGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKE 244
Query: 225 YIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN 281
Y+ RV G FP E + ++Y R +GK T F R+S N
Sbjct: 245 YVCRVEGEFPTEEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYN 293
Query: 282 GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
G S+V C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 294 GQSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIY 328
>gi|396081384|gb|AFN83001.1| pseudouridylate synthase [Encephalitozoon romaleae SJ-2008]
Length = 324
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 146/252 (57%), Gaps = 20/252 (7%)
Query: 65 YYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ 124
Y+F + ++VK RW + ++D+ EF+ R DY++SA++CG I V+EE+V + ++
Sbjct: 8 YFFTYRTNVKGRWCARPVIDVLTSEFRTRTRDYFLSALECGVITVNEEVVEPTRMLRVGD 67
Query: 125 KISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLA 184
I H +H HEP ++ +++ E D + V KPP +P HP G YR+ + I +A D
Sbjct: 68 IIKHTVHIHEPS--HPEIDVIKIEEDYIVVNKPPGIPCHPTGGYREYS---ITRALFDDK 122
Query: 185 PLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI 244
+ ++RLD VSG+LI+A L R + +K Y+A+V GVFPE VDV+
Sbjct: 123 KVACINRLDMPVSGVLIIATKNYSRCLERIK----DAVKIYVAKVCGVFPER---VDVDK 175
Query: 245 NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
+ + G++ + + GKA T F R+ +S+V C P+TGRTHQIR+HLQ
Sbjct: 176 SIKCTEGKNRCVNDE--------GKACLTLFRRLEYKDGYSLVECRPVTGRTHQIRIHLQ 227
Query: 305 YTGYPIANDMLY 316
G+P+ ND++Y
Sbjct: 228 SIGFPVINDIMY 239
>gi|297296167|ref|XP_001096617.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Macaca mulatta]
Length = 484
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 126/215 (58%), Gaps = 19/215 (8%)
Query: 110 DEEMVPVSYTVKSS-QKISHFL----HRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHP 164
DE SY + +K + FL HRHEPPV A + +L + DV+ V KP S+PVHP
Sbjct: 125 DEHFKETSYYFEGGLRKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHP 184
Query: 165 CGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKR 224
CG++R NTV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K
Sbjct: 185 CGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKE 244
Query: 225 YIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN 281
Y+ RV G FP E + ++Y R DT +GK T F R+S N
Sbjct: 245 YVCRVEGEFPTEEVTCKEPILVVSYKVGVCRV---------DT--RGKPCETVFQRLSYN 293
Query: 282 GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
G S+V C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 294 GQSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIY 328
>gi|332843546|ref|XP_003314668.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
isoform 1 [Pan troglodytes]
Length = 484
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 124/215 (57%), Gaps = 19/215 (8%)
Query: 110 DEEMVPVSYTVKSS-QKISHFL----HRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHP 164
DE SY + +K + FL HRHEPPV A + +L + DV+ V KP S+PVHP
Sbjct: 125 DEHFAETSYYFEGGLRKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHP 184
Query: 165 CGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKR 224
CG++R NTV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K
Sbjct: 185 CGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKE 244
Query: 225 YIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN 281
Y+ RV G FP E + ++Y R +GK T F R+S N
Sbjct: 245 YVCRVEGEFPTEEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYN 293
Query: 282 GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
G S+V C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 294 GQSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIY 328
>gi|397512607|ref|XP_003826632.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
isoform 2 [Pan paniscus]
Length = 484
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 124/215 (57%), Gaps = 19/215 (8%)
Query: 110 DEEMVPVSYTVKSS-QKISHFL----HRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHP 164
DE SY + +K + FL HRHEPPV A + +L + DV+ V KP S+PVHP
Sbjct: 125 DEHFAETSYYFEGGLRKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHP 184
Query: 165 CGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKR 224
CG++R NTV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K
Sbjct: 185 CGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKE 244
Query: 225 YIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN 281
Y+ RV G FP E + ++Y R +GK T F R+S N
Sbjct: 245 YVCRVEGEFPTEEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYN 293
Query: 282 GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
G S+V C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 294 GQSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIY 328
>gi|302692494|ref|XP_003035926.1| hypothetical protein SCHCODRAFT_30820 [Schizophyllum commune H4-8]
gi|300109622|gb|EFJ01024.1| hypothetical protein SCHCODRAFT_30820, partial [Schizophyllum
commune H4-8]
Length = 262
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 145/264 (54%), Gaps = 16/264 (6%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKG-RPYDYYVSAVKCGRIQVDEEMVPV 116
G +V+PY+ F + + W G+T++D+ AE FK RP ++Y A++ G + ++ +
Sbjct: 5 GLVSVRPYWHYFWAAAQPAWVGRTVLDVAAERFKPPRPREFYAYALRSGLLTLNGRLTDP 64
Query: 117 SYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGI 176
TV++ ++ HRHEPPV V + + D+L V KP VPVHP G+YR N + +
Sbjct: 65 DTTVRAGDQLQTVAHRHEPPVTGAGVRAISQSEDLLVVEKPGGVPVHPVGRYRYNCLTHM 124
Query: 177 LQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEG 236
++ E L + PV RLDRL SG+++ NA A + G+V K Y+ARV G FP
Sbjct: 125 MR-EQGLPAVRPVSRLDRLTSGVMLFPLNARAAGRLGVALRDGRVRKEYLARVRGRFPR- 182
Query: 237 EQVV--DVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPI 292
E V+ + + + G S +GK + T F R+S + S+VLC P
Sbjct: 183 EPVLCKEKLLLVHRQLGLSIVHE---------EGKPSATAFVRVSYDAKTDTSLVLCRPY 233
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGRTHQIRVHL + G+PI ND Y
Sbjct: 234 TGRTHQIRVHLLHLGHPIPNDPYY 257
>gi|357621120|gb|EHJ73069.1| ribosomal pseudouridine synthase [Danaus plexippus]
Length = 297
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 113/183 (61%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y +G R V PYYF F + K RW G+ I+D+FA EF+ P Y ++ G + V+ E
Sbjct: 115 YYIENGLRKVYPYYFTFTTFTKGRWVGEKILDVFAREFRAHPAAEYERCIRAGTLTVNYE 174
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
V Y +K + +++ +HRHE PV + ++++ + D++ V KP S+PVHPCG+YR NT
Sbjct: 175 RVDPDYRLKHNDLLANVVHRHEVPVTSQPITLVHIDEDIVVVNKPASIPVHPCGRYRHNT 234
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
VV IL E++L L +HRLDRL SGLL+ R+ KA QI +V K Y+ RV+G
Sbjct: 235 VVFILAKEYNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEHQIRNRQVQKEYVCRVDGE 294
Query: 233 FPE 235
FPE
Sbjct: 295 FPE 297
>gi|406601266|emb|CCH47080.1| hypothetical protein BN7_6689 [Wickerhamomyces ciferrii]
Length = 358
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 152/273 (55%), Gaps = 18/273 (6%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
YI ++G R V PYY + K W G+ ++DL + EF+ R DYY+ + G + V+ +
Sbjct: 9 YIIKNGLRKVVPYYDINSTRAKGHWFGRKVIDLLSGEFRTRGLDYYLQQIDKGFVTVNRK 68
Query: 113 MVPVS------YTVKSSQKISHFLHRHEPPVMAWD-VSILQKEPDVLTVCKPPSVPVHPC 165
++ ++ +S H HE PV+ + + ++ ++ ++ + KP S+P HP
Sbjct: 69 GTLITGRAVTHLQLQGHDILSTKSHLHEAPVVYQESIPVIYQDEKIIVINKPSSIPTHPT 128
Query: 166 GQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRY 225
G+Y KN++ +L+ + +L L+P +RLDRL SG+LIL++++ + ++ V+K Y
Sbjct: 129 GRYVKNSITELLKLQENLTSLYPCYRLDRLTSGVLILSKDSKTSGEIHDKVREKGVVKHY 188
Query: 226 IARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNG--T 283
+ARV G FP+ + D ++ + + T E G + K A T F R+ N
Sbjct: 189 VARVTGKFPDN-VICDRDVFH--VDPKKTYEFGKGV------KKEALTVFERLKYNEELN 239
Query: 284 HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
SIVLC+P TGRTHQIR+HL + +PI ND LY
Sbjct: 240 ESIVLCKPQTGRTHQIRIHLNFLKHPIINDPLY 272
>gi|380794985|gb|AFE69368.1| RNA pseudouridylate synthase domain-containing protein 2, partial
[Macaca mulatta]
Length = 334
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/189 (45%), Positives = 116/189 (61%), Gaps = 14/189 (7%)
Query: 131 HRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVH 190
HRHEPPV A + +L + DV+ V KP S+PVHPCG++R NTV+ IL EH L L P+H
Sbjct: 1 HRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHNTVIFILGKEHQLKELHPLH 60
Query: 191 RLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD---VNINYN 247
RLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G FP E + ++Y
Sbjct: 61 RLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEGEFPTEEVTCKEPILVVSYK 120
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTG 307
R DT +GK T F R+S NG S+V C P+TGRTHQIRVHLQ+ G
Sbjct: 121 VGVCRV---------DT--RGKPCETVFQRLSYNGQSSVVRCRPLTGRTHQIRVHLQFLG 169
Query: 308 YPIANDMLY 316
+PI ND +Y
Sbjct: 170 HPILNDPIY 178
>gi|403289219|ref|XP_003935762.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
isoform 2 [Saimiri boliviensis boliviensis]
Length = 484
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 124/215 (57%), Gaps = 19/215 (8%)
Query: 110 DEEMVPVSYTVKSS-QKISHFL----HRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHP 164
DE SY + +K + FL HRHEPPV A + +L + DV+ V KP S+PVHP
Sbjct: 125 DEHFAETSYYFEGGLRKDNDFLRNTVHRHEPPVTAEPIHLLAENEDVVVVDKPSSIPVHP 184
Query: 165 CGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKR 224
CG++R NTV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K
Sbjct: 185 CGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKE 244
Query: 225 YIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN 281
Y+ RV G FP E + ++Y R + GK T F R+S N
Sbjct: 245 YVCRVEGEFPTEEVTCKEPILVVSYKVGVCRVDPQ-----------GKPCETVFQRLSYN 293
Query: 282 GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
G S+V C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 294 GHSSVVQCRPLTGRTHQIRVHLQFLGHPILNDPIY 328
>gi|302682125|ref|XP_003030744.1| hypothetical protein SCHCODRAFT_16635 [Schizophyllum commune H4-8]
gi|300104435|gb|EFI95841.1| hypothetical protein SCHCODRAFT_16635 [Schizophyllum commune H4-8]
Length = 506
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 151/271 (55%), Gaps = 17/271 (6%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G + +KPY++ F + K RW G+ I+++ + EF+ R ++Y A++ G ++ ++
Sbjct: 18 GLKKIKPYWYPFCTMAKERWIGREILEVVSTEFRDRSMEFYRYALESGVTTINGKVARPD 77
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSIL--QKEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+++ +I + +HRHEPPV + V +L E + V KP S+PVH G+Y +N+++
Sbjct: 78 TIIRNGDRIENVVHRHEPPVTSTPVRVLLHDTERGFIVVNKPGSIPVHAAGRYNRNSLIH 137
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL E ++ V+RLDRL SGL+I+ NA A ++ G V K Y+ARV G FP+
Sbjct: 138 ILMHEMGFKKVYTVNRLDRLTSGLMIIPLNADLARSLTKEFIEGSVRKEYVARVKGKFPD 197
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNG-THSIVLCEPITG 294
GE + + + T + L +G+ A T F +I + T+S V+
Sbjct: 198 GEVICEEPL--------LTVDRQMGLNIVHPEGRPAKTVFNKIRYDPHTNSSVI------ 243
Query: 295 RTHQIRVHLQYTGYPIANDMLYLCEHVTHRE 325
+HQ+RVHLQY GYPIAND +Y E V R+
Sbjct: 244 HSHQLRVHLQYLGYPIANDPVYSSEKVWGRK 274
>gi|322791282|gb|EFZ15806.1| hypothetical protein SINV_13849 [Solenopsis invicta]
Length = 360
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 113/188 (60%), Gaps = 14/188 (7%)
Query: 132 RHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHR 191
RHE PV + ++++ + DV+ V KP S+PVHPCG+YR NTVV IL E++L L +HR
Sbjct: 1 RHEVPVTSEPITVIHMDEDVVVVNKPASIPVHPCGRYRHNTVVFILAKEYNLKNLRTIHR 60
Query: 192 LDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI---NYNA 248
LDRL SG+L+ R KA QI +V K+Y+ RV G FPE E + I +Y
Sbjct: 61 LDRLTSGILLFGRTPKKARQMEHQIRNRQVHKQYVCRVEGEFPEEEVICSEPIEVVSYKI 120
Query: 249 SAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGY 308
+ + KGK T+F R+S NG S+VLC+P TGR HQIRVHLQY GY
Sbjct: 121 GVCKVSE-----------KGKDCITRFKRLSYNGKSSVVLCKPQTGRMHQIRVHLQYLGY 169
Query: 309 PIANDMLY 316
P+ ND LY
Sbjct: 170 PVVNDPLY 177
>gi|441615676|ref|XP_004088318.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
isoform 2 [Nomascus leucogenys]
Length = 484
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 119/199 (59%), Gaps = 14/199 (7%)
Query: 121 KSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE 180
K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R NTV+ IL E
Sbjct: 141 KDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHNTVIFILGKE 200
Query: 181 HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVV 240
H L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G FP E
Sbjct: 201 HQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEGEFPTEEVTC 260
Query: 241 D---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTH 297
+ ++Y R +GK T F R+S NG S+V C P+TGRTH
Sbjct: 261 KEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGQSSVVRCRPLTGRTH 309
Query: 298 QIRVHLQYTGYPIANDMLY 316
QIRVHLQ+ G+PI ND +Y
Sbjct: 310 QIRVHLQFLGHPILNDPIY 328
>gi|71009880|ref|XP_758324.1| hypothetical protein UM02177.1 [Ustilago maydis 521]
gi|46098066|gb|EAK83299.1| hypothetical protein UM02177.1 [Ustilago maydis 521]
Length = 1096
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 132/232 (56%), Gaps = 12/232 (5%)
Query: 89 EFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKE 148
EF+ R +YYV A+ G V+ + + + KI + +HRHEPPV + I+ ++
Sbjct: 4 EFRDRTKEYYVWAIHKGICTVNAKKADLHQILGDGDKICNSVHRHEPPVTDEPIKIIHRD 63
Query: 149 PD--VLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNA 206
D +L + KP S+PVH G+Y ++T+VG+LQ+EH + ++ +RLDRL SG+++ +
Sbjct: 64 DDEGILVIVKPGSIPVHAAGRYLRHTLVGLLQSEHGVDMVYTTNRLDRLTSGIMVCSTKK 123
Query: 207 SKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL 266
A Q AG+V K Y+ RV G FP+GE V I T + +
Sbjct: 124 ETASRLGAQFAAGQVNKAYVCRVRGKFPQGEVVCKQPI--------LTIDRQSGVNIVHP 175
Query: 267 KGKAACTKFTRISTNGTH--SIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
KGK T F R+S + + S+V C PITGRTHQIRVH+QY G+PI ND +Y
Sbjct: 176 KGKHCETIFVRLSYDASDDSSVVFCRPITGRTHQIRVHVQYLGHPICNDPIY 227
>gi|407042495|gb|EKE41358.1| RNA pseudouridine synthase superfamily protein [Entamoeba nuttalli
P19]
Length = 402
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 148/271 (54%), Gaps = 20/271 (7%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F +G R V PY++ F + K RW G+ IVD+F EFK + + ++ G I+++ +
Sbjct: 57 YYFENGLRRVLPYFYTFKVNAKGRWIGRNIVDVFVNEFKLCNEETTIKKIEKGLIKINNK 116
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
++ S + +I H +HRHEPPV ++I+++ D + + KP S+PVHPCG+YR NT
Sbjct: 117 IIEPSTIIHHHDEIEHQVHRHEPPVYCDKLTIVKETNDFIAIDKPSSIPVHPCGRYRHNT 176
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
V+ IL A L PVHRLDR+ SG+L+LA+ A F+ + K K YI RV G
Sbjct: 177 VIFIL-AHEGYPNLRPVHRLDRMTSGILLLAKTIQVAREFQSYMTIKK--KEYICRVRGR 233
Query: 233 FPEGEQVVDVNINYNASAGRSTAESGD---SLGDTPLKGKAACTKFTRI----STNGTHS 285
E+ + + GR + S+ + GK ++F + TN T +
Sbjct: 234 L---EKTI-----VTSKIGRKRIDDKKIHVSVNEIEEDGKECRSEFNPLFYDEKTNTTVA 285
Query: 286 IVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ L +GRTHQIRVHLQ +PI ND +Y
Sbjct: 286 VALLG--SGRTHQIRVHLQSIHHPIVNDPIY 314
>gi|449329148|gb|AGE95422.1| hypothetical protein ECU05_0680 [Encephalitozoon cuniculi]
Length = 318
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 147/254 (57%), Gaps = 24/254 (9%)
Query: 65 YYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ 124
Y+F + ++VK RW K I+D+ EF+ R DY++SA++CG I V+ E+V + +
Sbjct: 8 YFFTYRTNVKERWYRKPIIDVLVSEFRTRTRDYFLSALECGVITVNGEVVKPTRILGMGD 67
Query: 125 KISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLA 184
I H +H H+P ++ ++++E D + V KPP +P HP G YR+ V L + +A
Sbjct: 68 VIRHTVHIHDP--AHPEIGVIKEEGDYIVVNKPPGIPCHPTGGYREYCVTKALFGDEKVA 125
Query: 185 PLFPVHRLDRLVSGLLILA-RNASKADLFRQQIEAGKVIKR-YIARVNGVFPEGEQVVDV 242
++RLD VSG+LILA RN SK +EA + K+ Y+A+V G+FP+ VDV
Sbjct: 126 C---INRLDMPVSGVLILAVRNHSKC------LEAIRDAKKIYVAKVYGMFPDK---VDV 173
Query: 243 NINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVH 302
+ + GR + GKA T F R+ +S+V C P+TGRTHQIR+H
Sbjct: 174 DKRIGCTEGRYRHVNAG--------GKACLTLFRRLEYRDGYSLVECRPVTGRTHQIRIH 225
Query: 303 LQYTGYPIANDMLY 316
LQ G+PIAND++Y
Sbjct: 226 LQSIGFPIANDIMY 239
>gi|403371119|gb|EJY85439.1| hypothetical protein OXYTRI_16699 [Oxytricha trifallax]
Length = 354
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 147/271 (54%), Gaps = 7/271 (2%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F++G R V Y +F++ K RW + + D++ EF +YY A+ GRI V+ +
Sbjct: 6 YYFKNGLRFVNSYPHQFVAFGKKRWVSQQLYDVYCREFLSNTPEYYKEAILDGRITVNGK 65
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
+ + ++ + KI H + R E PV+ + I+ ++ + + V KP S+PVH G ++ N+
Sbjct: 66 RASLFHKIQETDKIVHTVTRKEVPVIDQKIDIIYEDQNYICVDKPASMPVHEVGMFKHNS 125
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
++GIL+ EH L +HRLDR SG++ A+N + FR Q++ KV K Y+ARV G
Sbjct: 126 LLGILENEHKYKGLKTMHRLDRQTSGIVFFAKNVKANNEFRDQLDNDKVQKVYLARVEGN 185
Query: 233 FPEGEQVVDVNINYNA-----SAGRSTAESGDSLGDTPLK-GKAACTKFTRISTNGTH-S 285
F E ++ +V + + E D L + K K A T F + +
Sbjct: 186 FLEQQKASEVKVEKSVYIKSHKEALYACEDEDKLTEEQRKTSKTAETVFKFMFFDEKLPQ 245
Query: 286 IVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
++L P TGRTHQIR+HL+ G+PIAND Y
Sbjct: 246 LILRFPKTGRTHQIRLHLKALGHPIANDRAY 276
>gi|344304981|gb|EGW35213.1| DRAP deaminase and pseudouridylate synthase [Spathaspora
passalidarum NRRL Y-27907]
Length = 416
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 155/299 (51%), Gaps = 29/299 (9%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYD----------YYVSAV 102
Y+ +G R VKPYY + + VK RW G+T+ +F +F R D Y +S V
Sbjct: 4 YVIENGLRKVKPYYLTYKTPVKLRWCGRTLTKIFQTDFGEREEDIVSDIKNNHLYILSNV 63
Query: 103 --KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVC 155
G ++ + S V I H H+HEP V W ++I+ ++ D++ V
Sbjct: 64 GRAGGPTEIKGWDLLQSRQVDGKDVIYHQKHKHEPSV-PWVHESIGIAIIYQDSDLVVVN 122
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQ 215
KP +P H G Y N+VV IL+ + ++P HRLD++ SG+LILA++ +
Sbjct: 123 KPAGIPTHATGSYMYNSVVEILKEQLGTDSIWPCHRLDKVTSGVLILAKSKEATCKMSKL 182
Query: 216 IEAGKVI--KRYIARVNGVFPEGEQVVDVNI-NYNASAGRSTAESGDSLGDTPLKGKAAC 272
I+ K K+Y+ARV G FPEGE V + + + N + G + L +
Sbjct: 183 IQEKKTSTEKKYLARVKGKFPEGEYVFNCPVFSVNVNGGYLQPPNSHQLQAN------ST 236
Query: 273 TKFTRISTNG--THSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSA 329
T FTR+S N SIVLC+PITG+ HQIR+HL+ GYPIAND LY E + E + A
Sbjct: 237 TIFTRLSYNDDLDQSIVLCKPITGKFHQIRIHLRNLGYPIANDFLYNPESESSNEIIKA 295
>gi|19173607|ref|NP_597410.1| similarity to HYPOTHETICAL PROTEIN OF THE FAMILY OF PSEUDOURIDINE
SYNTHASES YD36_YEAST [Encephalitozoon cuniculi GB-M1]
gi|19170813|emb|CAD26587.1| similarity to HYPOTHETICAL PROTEIN OF THE FAMILY OF PSEUDOURIDINE
SYNTHASES YD36_YEAST [Encephalitozoon cuniculi GB-M1]
Length = 318
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 146/254 (57%), Gaps = 24/254 (9%)
Query: 65 YYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ 124
Y+F + ++VK RW K I+D+ EF+ R DY++SA++CG I V+ E V + +
Sbjct: 8 YFFTYRTNVKERWYRKPIIDVLVSEFRTRTRDYFLSALECGVITVNGEAVKPTRILGMGD 67
Query: 125 KISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLA 184
I H +H H+P ++ ++++E D + V KPP +P HP G YR+ V L + +A
Sbjct: 68 VIRHTVHIHDP--AHPEIGVIKEEGDYIVVNKPPGIPCHPTGGYREYCVTKALFGDEKVA 125
Query: 185 PLFPVHRLDRLVSGLLILA-RNASKADLFRQQIEAGKVIKR-YIARVNGVFPEGEQVVDV 242
++RLD VSG+LILA RN SK +EA + K+ Y+A+V G+FP+ VDV
Sbjct: 126 C---INRLDMPVSGVLILAVRNHSKC------LEAIRDAKKIYVAKVYGMFPDK---VDV 173
Query: 243 NINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVH 302
+ + GR + GKA T F R+ +S+V C P+TGRTHQIR+H
Sbjct: 174 DKRIGCTEGRYRHVNAG--------GKACLTLFRRLEYRDGYSLVECRPVTGRTHQIRIH 225
Query: 303 LQYTGYPIANDMLY 316
LQ G+PIAND++Y
Sbjct: 226 LQSIGFPIANDIMY 239
>gi|402873976|ref|XP_003900824.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
isoform 2 [Papio anubis]
Length = 484
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 125/215 (58%), Gaps = 19/215 (8%)
Query: 110 DEEMVPVSYTVKSS-QKISHFL----HRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHP 164
DE SY + +K + FL HRHEPPV A + +L + DV+ V KP S+PVHP
Sbjct: 125 DEHFKETSYYFEGGLRKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHP 184
Query: 165 CGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKR 224
CG++R NTV+ IL E L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K
Sbjct: 185 CGRFRHNTVIFILGKERQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKE 244
Query: 225 YIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN 281
Y+ RV G FP E + ++Y R DT +GK T F R+S N
Sbjct: 245 YVCRVEGEFPTEEVTCKEPILVVSYKVGVCRV---------DT--RGKPCETVFQRLSYN 293
Query: 282 GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
G S+V C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 294 GQSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIY 328
>gi|307174606|gb|EFN65027.1| RNA pseudouridylate synthase domain-containing protein 2
[Camponotus floridanus]
Length = 376
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 112/187 (59%), Gaps = 14/187 (7%)
Query: 133 HEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRL 192
HE PV + ++++ + DV+ V KP S+PVHPCG+YR NTVV IL E++L L +HRL
Sbjct: 31 HEVPVTSEPITVIHMDEDVVVVNKPASIPVHPCGRYRHNTVVFILAKEYNLKNLRTIHRL 90
Query: 193 DRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI---NYNAS 249
DRL SG+L+ R KA QI +V K+Y+ RV G FPE E + I +Y
Sbjct: 91 DRLTSGILLFGRTPKKARQMEHQIRNRQVHKQYVCRVEGEFPEEEVICSEPIEVVSYKIG 150
Query: 250 AGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYP 309
+ + KGK T+F R+S NG S+VLC+P TGR HQIRVHLQY GYP
Sbjct: 151 VCKVSE-----------KGKDCVTRFKRLSYNGKSSVVLCKPQTGRMHQIRVHLQYLGYP 199
Query: 310 IANDMLY 316
+ ND LY
Sbjct: 200 VVNDPLY 206
>gi|390594800|gb|EIN04209.1| pseudouridine synthase [Punctularia strigosozonata HHB-11173 SS5]
Length = 466
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 143/266 (53%), Gaps = 21/266 (7%)
Query: 62 VKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVK 121
+ PY+ K RW G+ ++++ + EF+ R +Y ++ G I ++ + + +
Sbjct: 12 IPPYWACTTPMAKGRWIGRRVLEVLSTEFRDRSMEYNEYKIRSGLITLNGQRIGTETIFR 71
Query: 122 SSQKISHFLHRHEPPVMAWDVSILQ--KEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+ ++ ++HRHE PV + V IL KE + V KP S+PVHP G+Y +NT+ IL
Sbjct: 72 AGDRLEVYMHRHETPVTSAPVRILHHDKERQFIVVDKPGSLPVHPTGRYSRNTLTSILTD 131
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEA-----GKVIKRYIARVNGVFP 234
+ +P+ ++RLD+L SG++I++ N A ++ A G V K YIAR G+F
Sbjct: 132 DFGYSPIHTINRLDKLTSGIMIISLNPDLASTLADELRAKNRDQGGVKKEYIARCRGLFS 191
Query: 235 EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTR----ISTNGTHSIVLCE 290
GE + + +T L +GK A T F R STN S++LC
Sbjct: 192 SGEITCEEPL--------ATVNRQSGLVIVHPEGKPAKTVFARQHYDPSTNT--SVLLCR 241
Query: 291 PITGRTHQIRVHLQYTGYPIANDMLY 316
P TGR+HQIRVHLQY G+PIAND LY
Sbjct: 242 PFTGRSHQIRVHLQYLGFPIANDTLY 267
>gi|303284197|ref|XP_003061389.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456719|gb|EEH54019.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 497
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 120/208 (57%), Gaps = 22/208 (10%)
Query: 45 ANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKC 104
A+PP DY+ G R VKPY F+F+ HVK R G +V+LFA EF RP +YY A
Sbjct: 5 ASPPSPSDYVSIRGMRIVKPYAFDFVCHVKKRMEGVDVVELFAREFPARPREYYERAHAS 64
Query: 105 GRIQVD---------------------EEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS 143
G ++V+ +++ +K+ +++ H LHRHEPP + V
Sbjct: 65 GALRVENVRAKSNGGNGGNGGNDNARTSDVIRPLRPLKAGERVRHALHRHEPPTLDRPVE 124
Query: 144 ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA-EHDLAPLFPVHRLDRLVSGLLIL 202
++ D++ + KP ++PVHP GQYRKNTV+G L A DL LFPVHRLD+ VSGLL++
Sbjct: 125 VIAVADDLVAIHKPATMPVHPTGQYRKNTVLGYLAAHRRDLGKLFPVHRLDKNVSGLLVM 184
Query: 203 ARNASKADLFRQQIEAGKVIKRYIARVN 230
AR + A+ R Q+E +V K Y+A V
Sbjct: 185 ARTPTTANAMRTQVEGREVSKEYLALVT 212
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 286 IVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+V C P TGRTHQIR HL G+PI ND+ Y
Sbjct: 316 LVRCRPTTGRTHQIRAHLSRLGWPIVNDVKY 346
>gi|290981670|ref|XP_002673553.1| predicted protein [Naegleria gruberi]
gi|284087137|gb|EFC40809.1| predicted protein [Naegleria gruberi]
Length = 483
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 106/321 (33%), Positives = 171/321 (53%), Gaps = 22/321 (6%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y+ R+G R+ PY+ +F + ++RW K ++D++ EF Y + A + GR +++ E
Sbjct: 31 YLVRNGLRHAIPYFLDFQTGCRDRWVDKKVLDVYRAEFPYFSEQYLMKAFELGRFKINNE 90
Query: 113 MVPVSYT-VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
+ S+ I+H +H HE P+ ++ IL E D+L V KP S P+HPCG+YRKN
Sbjct: 91 NLNNLEEKWDKSKTIAHRVHFHEKPIFDRNIPILYDESDLLVVDKPASFPIHPCGRYRKN 150
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK--VIKRYIARV 229
++ IL+ E+ L VHRLD SG+L+LA+N + + I+ + + K Y+A V
Sbjct: 151 SLTYILE-ENGYGTLHVVHRLDHSTSGVLVLAKNKKVSGEIVEMIKTREKAIGKYYLAVV 209
Query: 230 NGVFPEGEQ-----VVDVNINYNASAGR---STAESGDSLGDTPLKGKAACTKFTRISTN 281
G + +GE V D+N ++ + ++G D L A T F+ I N
Sbjct: 210 KGKW-KGEYEVSGLVKDLNNSFVKCEKKVYCKNHKNGTWSADDELGTFEAITLFSGIVYN 268
Query: 282 GTH--SIVLCEPITGRTHQIRVHLQYTGYPIANDMLY----LCEHVTHREGMSADRAAAY 335
S+++C+PITGRTHQIR+HL+ G PI ND Y + E ++ + +
Sbjct: 269 KEKDISLIMCKPITGRTHQIRIHLESIGNPIINDFFYNEQFIKELEVQKKTLEESWRVDF 328
Query: 336 SHH---SPPPVSSDKSESSSE 353
S+H S +S + SESS++
Sbjct: 329 SNHQLESTSDISLENSESSTD 349
>gi|448511828|ref|XP_003866624.1| hypothetical protein CORT_0A07990 [Candida orthopsilosis Co 90-125]
gi|380350962|emb|CCG21185.1| hypothetical protein CORT_0A07990 [Candida orthopsilosis Co 90-125]
Length = 404
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 151/288 (52%), Gaps = 37/288 (12%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV--- 109
Y+F +G R V PYY + +H K RW G+T+++ + +F G P D ++ ++ G++ V
Sbjct: 4 YVFENGLRKVLPYYMNYQTHAKQRWVGRTLIETYINDF-GEPLDGVINDIQKGKLYVVNN 62
Query: 110 ------DEEMVPV----SYTVKSSQKISHFLHRHEPPVMAWD--VSILQKEPDVLTVCKP 157
E ++ + S V++ + HF H+HEP + W + IL ++ +++ V KP
Sbjct: 63 VGTSLPSESLIGLDVLSSRIVETKDVVHHFKHKHEPAI-PWQEKIPILYEDEEIIVVNKP 121
Query: 158 PSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIE 217
VP HP G Y N++ I++ + ++ HRLD++ SG+LIL ++ A F ++
Sbjct: 122 SGVPTHPSGNYSHNSLSEIVKEMYGFDSIWTCHRLDKVTSGVLILCKSRDSAIKFSNLLQ 181
Query: 218 AGK--VIKRYIARVNGVFPEGEQVVD-----VNINYNASAGRSTAESGDSLGDTPLKGKA 270
A K V K Y+ARV G FP G+ V VN+N G D+
Sbjct: 182 AKKNRVKKVYLARVKGEFPSGKHVYKCPIFAVNMNGYLQPGDLENVQADT---------- 231
Query: 271 ACTKFTRI--STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F RI S SIV C+PI+G+ HQIR+HL+ GYPI+ND Y
Sbjct: 232 -ATIFQRIHYSKELNESIVKCQPISGKFHQIRIHLRNLGYPISNDHFY 278
>gi|164657135|ref|XP_001729694.1| hypothetical protein MGL_3238 [Malassezia globosa CBS 7966]
gi|159103587|gb|EDP42480.1| hypothetical protein MGL_3238 [Malassezia globosa CBS 7966]
Length = 937
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 147/266 (55%), Gaps = 18/266 (6%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G R + PY+ E+ + K RW G+ I+++F EF+ R +YY+ A+ G V+ V +
Sbjct: 9 GLRRLPPYWHEYKTRAKTRWYGRQILEVFTTEFRDRTKEYYIWAIHHGLCTVNGHPVTPT 68
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDV--LTVCKPPSVPVHPCGQYRKNTVVG 175
Y ++++ + + +HRHEP V V IL ++ + V KP S+PVH G+Y +T+V
Sbjct: 69 YQIQNNDFLVNRVHRHEPAVTNAPVRILHRDDSQGRIVVVKPGSIPVHATGRYHHHTLVE 128
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
+++ + L L+ +RLDRL SG+++ + A AG V K Y+ RV G FP+
Sbjct: 129 MVKEQAKLQNLYTSNRLDRLTSGIMVCSTTKEAACELGNDFNAGLVNKAYVCRVVGRFPD 188
Query: 236 GEQVVDVN---INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCE 290
G +VD ++ + +G + KGK T F R+S + S+++C
Sbjct: 189 G--IVDCTEPILSVDRQSGLNIVHP---------KGKECRTLFQRLSYDAATDSSVLVCR 237
Query: 291 PITGRTHQIRVHLQYTGYPIANDMLY 316
PITGRTHQIRVH Q+ G+ I+ND LY
Sbjct: 238 PITGRTHQIRVHAQWLGHAISNDPLY 263
>gi|299469703|emb|CBN76557.1| Pseudouridine synthase [Ectocarpus siliculosus]
Length = 615
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 114/183 (62%)
Query: 51 EDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVD 110
E Y+ G R V+PY ++F +H K RW G+T+VD+F+ EF G +Y +AV+ G + V+
Sbjct: 82 EYYVDDHGLRRVRPYIYDFQTHAKERWLGRTVVDVFSAEFGGEARSHYENAVRGGLLTVN 141
Query: 111 EEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRK 170
V V Y +++S I + HRHEPPV D+ I+ + + L V KP +VP+HPCG YR
Sbjct: 142 GNKVGVDYELQNSDLICNKTHRHEPPVCGGDIPIVSESAEELVVDKPCTVPIHPCGSYRF 201
Query: 171 NTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
NT+ I+ + L HRLDRL SGL I A+ A +A + ++QI +G+ K Y+ARV+
Sbjct: 202 NTLFYIMHRQRPDLTLRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGSGRTRKTYLARVS 261
Query: 231 GVF 233
G F
Sbjct: 262 GDF 264
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 268 GKAACTKFTRIS--TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCE 319
GK A T ++ T S+V C P+ GRTHQIR+HLQ+ G+PIAND Y E
Sbjct: 421 GKEAQTVVRKVGYDTASDTSVVECTPVHGRTHQIRLHLQWAGHPIANDPCYGGE 474
>gi|190346820|gb|EDK38997.2| hypothetical protein PGUG_03095 [Meyerozyma guilliermondii ATCC
6260]
Length = 390
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 101/281 (35%), Positives = 156/281 (55%), Gaps = 28/281 (9%)
Query: 53 YIFRDGRR-NVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQ--V 109
Y+F DGR V PYYF++ +HVK RW G+TI +F + G+ +K R+Q +
Sbjct: 3 YVF-DGRLCRVTPYYFQYKTHVKQRWVGRTIPQVFESDL-GQSSSLSYEDIKHDRLQLQI 60
Query: 110 DEEMVPV--------SYTVKSSQKISHFLHRHEPPVMAWD--VSILQKEPDVLTVCKPPS 159
++ PV + ++ I ++ H HEPP++ W +SI+ ++P ++ V KP
Sbjct: 61 KDKGKPVIIQGEKLITQPLRQHDIILNYKHIHEPPIV-WSGPISIIYQDPSLIVVNKPSG 119
Query: 160 VPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
+P HP G +R N+V I++A+ L +FP HRLD+ SG+L+LA ++ ++Q++
Sbjct: 120 IPTHPSGNFRYNSVTEIVKAQLHLESIFPCHRLDKATSGILMLATTSAACSNIQKQLQER 179
Query: 220 KVIKR-YIARVNGVFPEGEQV-VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTR 277
K +K+ YIARV G FP + V D N++AG S+ + T FTR
Sbjct: 180 KDVKKEYIARVKGKFPPSQLVHQDPVFLLNSTAGYIMPGRYVSIDSS--------TTFTR 231
Query: 278 ISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ N SIV CEP +G+ HQIR+HL+ G+PI ND LY
Sbjct: 232 LKYNSELDESIVSCEPHSGKMHQIRIHLRNLGFPIVNDKLY 272
>gi|325181219|emb|CCA15633.1| RNA pseudouridylate synthase putative [Albugo laibachii Nc14]
Length = 440
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 156/305 (51%), Gaps = 34/305 (11%)
Query: 41 WQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVS 100
+QTP K +YI ++G R VKPY +E+ + K RW + + D+ EF YY
Sbjct: 44 FQTP-----KPEYIIQNGYRLVKPYVYEYQAFAKERWYQRELFDVLTTEFGAYTSQYYDL 98
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSV 160
AV+ GR+ V+ +V +Y +++ I H HRHEPPV + + I+ ++ ++L V KP S+
Sbjct: 99 AVRSGRVTVNHSIVSQTYRIQNGDFIVHRTHRHEPPVSSDHIPIVYEDDELLVVSKPCSI 158
Query: 161 PVHPCGQYRKNTVVGILQAEHDLAP-LFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
P HPCG YR N++ IL + + L VHRLDRL SG++I A+ A+ A ++
Sbjct: 159 PTHPCGAYRHNSLHSILLHQIPVESFLHVVHRLDRLTSGIVIFAKTAAAAKKLSTEMTKR 218
Query: 220 KVIKRYIARVNGVFP----------------EGEQVVDVN-INYNASAGR-----STAES 257
+V K Y+A V G P +Q+ + + I+++ R
Sbjct: 219 QVHKTYLAGVKGFIPSQWDEESKKQQNEIKERAKQICEASEISFSKKQIRVKCPLKCLSH 278
Query: 258 GDSLGDTPLKGKAACTKFTR------ISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIA 311
+ + + GK + T F R + ++ C P+TGRTHQIR+HLQ G PIA
Sbjct: 279 KNGVWECHKDGKESETIFERDQLTVPVENRDVSCVLRCFPVTGRTHQIRLHLQLIGLPIA 338
Query: 312 NDMLY 316
ND Y
Sbjct: 339 NDPCY 343
>gi|294659113|ref|XP_461454.2| DEHA2F25652p [Debaryomyces hansenii CBS767]
gi|202953627|emb|CAG89871.2| DEHA2F25652p [Debaryomyces hansenii CBS767]
Length = 433
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 157/297 (52%), Gaps = 39/297 (13%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYD-----------YYVS- 100
Y F +G R VKPYYF + +HVK+RW GKT+ ++F E G+ +D Y +S
Sbjct: 7 YYFENGLRKVKPYYFTYKTHVKSRWIGKTVYEVFTTEL-GQEHDITKKEITNQIIYILSN 65
Query: 101 -AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA----------------WDVS 143
+K G I + V ++S I + H HEP V D+S
Sbjct: 66 QGMKGGPIAIKGWENLVERKIQSQDLIYNSKHIHEPSVAQGLELVKKSSKCTSQDLTDLS 125
Query: 144 ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILA 203
I+ + ++L + KP +P HP G YR N++ +++ + +L ++P HRLD++ SG+LIL
Sbjct: 126 IIFENDEMLVIDKPAGIPTHPKGNYRYNSITELVKHDLNLENVWPCHRLDKVTSGILILG 185
Query: 204 RNASKADLFRQQI--EAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSL 261
+ ++ I E ++ K+Y+ARV G FP+ E V++ I ++G S
Sbjct: 186 TTKQGSKIYSTIINNERDRISKQYVARVMGEFPKDEFVMNCPIFLVNTSGGYIMPSNSR- 244
Query: 262 GDTPLKGKAACTKFTRISTNG--THSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ P K + T F R++ N SIVLC+PITGR HQIR+HL+ TG+PI ND Y
Sbjct: 245 -NVP---KNSTTIFRRLNYNKELNQSIVLCKPITGRMHQIRIHLRNTGHPIVNDYEY 297
>gi|146418802|ref|XP_001485366.1| hypothetical protein PGUG_03095 [Meyerozyma guilliermondii ATCC
6260]
Length = 390
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/281 (35%), Positives = 156/281 (55%), Gaps = 28/281 (9%)
Query: 53 YIFRDGRR-NVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQ--V 109
Y+F DGR V PYYF++ +HVK RW G+TI +F + G+ +K R+Q +
Sbjct: 3 YVF-DGRLCRVTPYYFQYKTHVKQRWVGRTIPQVFESDL-GQSSSLSYEDIKHDRLQLQI 60
Query: 110 DEEMVPV--------SYTVKSSQKISHFLHRHEPPVMAWD--VSILQKEPDVLTVCKPPS 159
++ PV + ++ I ++ H HEPP++ W +SI+ ++P ++ V KP
Sbjct: 61 KDKGKPVIIQGEKLITQPLRQHDIILNYKHIHEPPIV-WSGPISIIYQDPSLIVVNKPSG 119
Query: 160 VPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
+P HP G +R N+V I++A+ L +FP HRLD+ SG+L+LA ++ ++Q++
Sbjct: 120 IPTHPSGNFRYNSVTEIVKAQLHLESIFPCHRLDKATSGILMLATTSAACSNIQKQLQER 179
Query: 220 KVIKR-YIARVNGVFPEGEQV-VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTR 277
K +K+ YIARV G FP + V D N++AG S+ + T FTR
Sbjct: 180 KDVKKEYIARVKGKFPPSQLVHQDPVFLLNSTAGYIMPGRYVSIDSS--------TTFTR 231
Query: 278 ISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ N SIV CEP +G+ HQIR+HL+ G+PI ND LY
Sbjct: 232 LKYNLELDESIVSCEPHSGKMHQIRIHLRNLGFPIVNDKLY 272
>gi|395503409|ref|XP_003756058.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
[Sarcophilus harrisii]
Length = 376
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 119/195 (61%), Gaps = 16/195 (8%)
Query: 126 ISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP 185
+ + +HRHEPPV A + +L ++ +V+ V KP S+PVHPCG++R NTV+ +L EH L
Sbjct: 41 LQNTVHRHEPPVTAEPIRLLAEDDEVVVVDKPSSMPVHPCGRFRHNTVIFVLGKEHQLKE 100
Query: 186 LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVV----D 241
L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G FP E V
Sbjct: 101 LHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEGEFP-AEAVTCKEPI 159
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
+ ++Y R + GK T F R+S NG S+V C P+TGRTHQIRV
Sbjct: 160 LVVSYKVGLCRVDPQ-----------GKPCETVFQRLSYNGQSSVVHCRPLTGRTHQIRV 208
Query: 302 HLQYTGYPIANDMLY 316
HLQ+ G+PI ND +Y
Sbjct: 209 HLQFLGHPIINDPIY 223
>gi|402465417|gb|EJW01249.1| RluA family pseudouridine synthase [Edhazardia aedis USNM 41457]
Length = 343
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 135/252 (53%), Gaps = 18/252 (7%)
Query: 65 YYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ 124
Y+ ++VK RW K I+D+FA+EF+ DYYV A+ G I V+ + VP+ Y +K
Sbjct: 6 YFKTLTTNVKGRWVNKQIIDVFAKEFRSMSRDYYVGAILNGIITVNNKHVPLDYVLKHGD 65
Query: 125 KISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLA 184
K+ H LH HEP ++ IL + D L V KP + HP G Y T+ L E+
Sbjct: 66 KVRHILHVHEPE--PCNIEILYESKDFLVVDKPCGMASHPVGLYYYYTITKAL--ENKYG 121
Query: 185 PLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI 244
PL ++RLD SG+L+++R S +D++ + + K+ K Y A+V G + E V +
Sbjct: 122 PLSCINRLDIPTSGVLLISR--SNSDIYHSLMRSMKIKKSYFAKVKGNLKDQEVNVPL-- 177
Query: 245 NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
N G A+ GK + T F I+ S+V C P TGRTHQIRVHL+
Sbjct: 178 -LNVPCGNVVADKN---------GKESRTAFRNIAFKDGFSLVECRPFTGRTHQIRVHLK 227
Query: 305 YTGYPIANDMLY 316
Y G+PI ND +Y
Sbjct: 228 YIGHPIINDPIY 239
>gi|410084014|ref|XP_003959584.1| hypothetical protein KAFR_0K00930 [Kazachstania africana CBS 2517]
gi|372466176|emb|CCF60449.1| hypothetical protein KAFR_0K00930 [Kazachstania africana CBS 2517]
Length = 374
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 149/286 (52%), Gaps = 30/286 (10%)
Query: 55 FRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV---DE 111
F G R++ PYY S K RW K+++++ + EF D Y+ G Q+ E
Sbjct: 7 FSSGLRHITPYYATRSSFAKGRWFNKSLLEVLSAEFGTFTRDQYLKEFDLGNYQLLRNSE 66
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAW----------------DVSILQKEPDVLTVC 155
M PV+ ++S I H+HEPPV W ++I+ ++ D+L +
Sbjct: 67 RMDPVNTLIRSGDIIVVRQHKHEPPVKQWCLNRQIENFDLLNRVAGMNIVFEDDDLLVLD 126
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQ 215
KP +P+HP G++ NT++ IL++ + +FP +RLD++ SGL+ILA+++ A + + +
Sbjct: 127 KPNGLPIHPTGKFYHNTLIEILKSHN--KNVFPTYRLDKVTSGLIILAKSSGVAKMIQDK 184
Query: 216 IEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKF 275
I+ V K Y+ARV G FP E V + Y R + D A T+F
Sbjct: 185 IKTRNVTKLYLARVKGKFPGTEPVKMDSPIYTIDPKRRFPAGLTTSRD-------ATTEF 237
Query: 276 T--RISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCE 319
+ + + S+VLC P+TGRTHQIR+HL GYPI ND LY E
Sbjct: 238 SLFKYLPDVNESVVLCRPLTGRTHQIRIHLLRLGYPIVNDPLYCPE 283
>gi|150865938|ref|XP_001385357.2| DRAP deaminase and pseudouridylate synthase [Scheffersomyces
stipitis CBS 6054]
gi|149387194|gb|ABN67328.2| DRAP deaminase and pseudouridylate synthase [Scheffersomyces
stipitis CBS 6054]
Length = 425
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 149/295 (50%), Gaps = 43/295 (14%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y+F +G R V+PYY +F +H K RW G+T+VD+F+ EF A R+ +D E
Sbjct: 6 YVFENGLRKVRPYYLQFNTHPKPRWIGRTVVDVFSSEFG--------EAKDILRLDIDNE 57
Query: 113 MVPV--------------------SYTVKSSQKISHFLHRHEPPV------MAWD--VSI 144
++ + + I + H HEP V + D + I
Sbjct: 58 LMYIRTGFGRKGGETVLKGWDSIGDRILDKFDVICNSKHMHEPSVPECPLQLHEDTRLKI 117
Query: 145 LQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILAR 204
+ + D+L V KP +P HP G Y NT+ IL+ + ++ ++P HRLD++ SG+LI +
Sbjct: 118 VFENEDMLVVDKPSGIPTHPTGNYYYNTMTEILKHDLNMKNVWPFHRLDKVTSGILIFGK 177
Query: 205 NASKADLFRQ--QIEAGKVIKRYIARVNGVFPEGEQVVDVNI-NYNASAGRSTAESGDSL 261
+ + D + Q E + K+Y+AR+ G FP E +V+ I + N++ G + D L
Sbjct: 178 SKTACDTYSSIFQNEKDNISKQYLARIEGEFPTTEVMVNCPIFSVNSTGGYIKPLNADML 237
Query: 262 GDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
P+ + R S SIV+C P+TGR HQIR+HL+ G+PI ND LY
Sbjct: 238 ---PINSTTVFKRL-RYSKELNQSIVICRPLTGRMHQIRIHLRNIGHPIVNDYLY 288
>gi|366987745|ref|XP_003673639.1| hypothetical protein NCAS_0A07000 [Naumovozyma castellii CBS 4309]
gi|342299502|emb|CCC67258.1| hypothetical protein NCAS_0A07000 [Naumovozyma castellii CBS 4309]
Length = 400
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 152/299 (50%), Gaps = 34/299 (11%)
Query: 49 VKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCG--R 106
V E YI +G R ++PYY S+ K RW GK ++++ A EF+ +YY++ + G R
Sbjct: 2 VGEVYI-SNGLRKIRPYYSTRSSYAKGRWLGKPLLEILANEFRAHSKEYYLNQINLGHYR 60
Query: 107 IQVD----EEMVPVSYTVKSSQKISHFLHRHEPPVMAW---------------DVSILQK 147
+ D E ++ +++ + H+HE PV W I+ +
Sbjct: 61 LLRDGCTLEPCQVLNTLIENKDIMVSMSHKHEAPVKQWCELEMENQDLPNRVAGFEIIYE 120
Query: 148 EPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNAS 207
+ D+L + KP +PVHP GQ+ +NT+ IL+ +A P +RLD++ SGLLI+A+NA
Sbjct: 121 DQDILVINKPAGIPVHPTGQFYQNTITEILKLHGKIA--LPCYRLDKITSGLLIMAKNAQ 178
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEG-----EQVV---DVNINYNASAGRSTAESGD 259
A +++I + + K Y+AR+ G FP+ E +V D ++ + T E
Sbjct: 179 TAGKIQERIRSRDMTKLYLARIQGKFPKLVDNPLEPIVPFTDPSLVTEVESDIYTIEPKK 238
Query: 260 SLGDTPLKGKAACTKFTRIST--NGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ A T F IS S+V C P+TGRTHQIR+HL GYPI ND LY
Sbjct: 239 KFPTGLSPSRTAKTLFYPISYFPMDNSSLVACRPLTGRTHQIRIHLARLGYPIVNDTLY 297
>gi|224007791|ref|XP_002292855.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971717|gb|EED90051.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 280
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 146/285 (51%), Gaps = 33/285 (11%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R V PY F F + K RW G+T+VD++ EEF P YY +A+ GRI V V Y
Sbjct: 1 RIVHPYPFTFATFAKARWVGRTVVDVYNEEFGSYPKSYYEAAIDAGRILVSGRPVDREYK 60
Query: 120 VKSSQKISHFLHRHEPPVMAWD-----------------VSILQKEPDVLTVCKPPSVPV 162
++ +++H +HRHEP V D V I+ ++ +L V KP ++ +
Sbjct: 61 IQGGDELNHLVHRHEPAVGLSDIIYDNGTITADYTEHPPVQIVYEDNSLLIVDKPSTIAI 120
Query: 163 HPCGQYRKNTVVGILQ----AEHDLAPLFPVHRLDRLVSGLLILARNASKA-DLFRQQIE 217
H G Y N++ IL + L LF VHRLDRL SGL+++A+ A + + +E
Sbjct: 121 HTSGAYNYNSLFEILSYWNPQAYGLGRLFTVHRLDRLTSGLVLIAKTPELARSMGKCIME 180
Query: 218 AGKVIKRYIARVNGVFPEG--EQVV-DVNIN-YNASAGRSTAESGDSLGDTPLKGKAACT 273
K Y+ RV G FP E+V D I+ N + E D G P A T
Sbjct: 181 RDGCEKLYLTRVKGKFPLNVMEKVASDGGIDAQNDNEHPHLTEEADRKGIKP-----AQT 235
Query: 274 KFTRISTNGTH--SIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
FT ++ + S+VL +P+TGRTHQIR+HLQ G+PIAND Y
Sbjct: 236 SFTLLTYDAVSDTSVVLAKPVTGRTHQIRLHLQQLGHPIANDHCY 280
>gi|156055472|ref|XP_001593660.1| pseudouridine synthase [Sclerotinia sclerotiorum 1980 UF-70]
gi|154702872|gb|EDO02611.1| hypothetical protein SS1G_05088 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 399
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 136/251 (54%), Gaps = 40/251 (15%)
Query: 101 AVKCGRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPS 159
A++ G I V+ + V S +K+ ISH LHRHEPPV A +SI+ ++ D++ + KP
Sbjct: 28 AMERGAIAVNGKPVESTSQIIKNGDVISHTLHRHEPPVTALPISIVHEDEDIIVINKPSG 87
Query: 160 VPVHPCGQYRKNTVVGILQAE--HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIE 217
VPVHP G+Y N+VV I++AE H PL P +RLDRL SG++ + ++A A+ QI
Sbjct: 88 VPVHPAGRYNYNSVVEIMRAERGHGWNPL-PCNRLDRLTSGIMFIGKHAKAAEALSLQIS 146
Query: 218 AGKVIKRYIARVNGVFPEGEQVVDVNI-NYNASAGRSTAESGDSLGDTPLKGKAACTKFT 276
V K YIARV G FP+GE V D+ I + G + + GKAA T F
Sbjct: 147 GRTVRKEYIARVKGKFPDGEVVCDMPILQISPKLGLNRVRA---------SGKAARTVFK 197
Query: 277 RIS--------------------------TNGTHSIVLCEPITGRTHQIRVHLQYTGYPI 310
R++ +SIV C P+TGRTHQ+RVHLQ+ G+PI
Sbjct: 198 RLAYYPPENLEQVEDSSEPMEPDKSKPSMNKEGYSIVRCLPVTGRTHQLRVHLQFLGHPI 257
Query: 311 ANDMLYLCEHV 321
ND +Y + V
Sbjct: 258 GNDPIYCNQRV 268
>gi|308495566|ref|XP_003109971.1| hypothetical protein CRE_06376 [Caenorhabditis remanei]
gi|308244808|gb|EFO88760.1| hypothetical protein CRE_06376 [Caenorhabditis remanei]
Length = 426
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 151/315 (47%), Gaps = 43/315 (13%)
Query: 4 KREEEKSKANDSNSNGNGNGNGNGNGNGNSSNN-MEIVWQTPANPPVKEDYIFRDGRRNV 62
K E KA N + G+ N ++ + + P N P K DG R++
Sbjct: 18 KSTESTGKAEKRKRAENVDFTGSKKKKWEDPNKKVDPLEELPMNIPFK----IVDGVRHL 73
Query: 63 KPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKS 122
PY+ + + K RW G+ +V++F+ EF +Y A K GRI V
Sbjct: 74 SPYWACYRTRTKGRWIGRKMVEVFSGEFLSTNRNYAKIACKMGRIYV------------- 120
Query: 123 SQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHD 182
R P + I+ D+L + KPPS+PVH CGQY +TV+G L+
Sbjct: 121 ---------RDLP------IRIISDTDDLLVIEKPPSLPVHTCGQYAIHTVLGQLRVNEG 165
Query: 183 LAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDV 242
+ L +HRLDR SG+L+ A+N F+ ++ G+ K YI +V+GVFP+ EQ+ D
Sbjct: 166 ITGLRVLHRLDRATSGVLLFAKNYETDLEFKTTLKQGEWSKEYICKVDGVFPDEEQLCDQ 225
Query: 243 NIN-YNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
I S G GK A ++F ++ ++GTHS+V TGRTHQIRV
Sbjct: 226 PIGPLVISMGIQCVRPD---------GKEAKSRFKKLWSDGTHSVVQVHIETGRTHQIRV 276
Query: 302 HLQYTGYPIANDMLY 316
H Q+ G+PI D LY
Sbjct: 277 HSQFLGHPIVGDQLY 291
>gi|307195434|gb|EFN77320.1| RNA pseudouridylate synthase domain-containing protein 2
[Harpegnathos saltator]
Length = 357
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 101/167 (60%), Gaps = 8/167 (4%)
Query: 150 DVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKA 209
DV+ V KP S+PVHPCG+YR NTVV IL E++L L +HRLDRL SG+L+ R KA
Sbjct: 4 DVVVVNKPASIPVHPCGRYRHNTVVFILAKEYNLKNLRTIHRLDRLTSGILLFGRTPKKA 63
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
QI +V K+Y+ RV G FPE E + I S + D KGK
Sbjct: 64 RQMEHQIRNRQVHKQYVCRVEGEFPEEEVICSEPIEV-VSYKIGVCKVSD-------KGK 115
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+F R+S NG S+VLC+P TGR HQIRVHLQY GYP+ ND LY
Sbjct: 116 DCVTRFKRLSYNGKSSVVLCKPQTGRMHQIRVHLQYLGYPVVNDPLY 162
>gi|302497041|ref|XP_003010521.1| hypothetical protein ARB_03222 [Arthroderma benhamiae CBS 112371]
gi|291174064|gb|EFE29881.1| hypothetical protein ARB_03222 [Arthroderma benhamiae CBS 112371]
Length = 482
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 139/258 (53%), Gaps = 26/258 (10%)
Query: 85 LFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSI 144
+F + + PY +A+ GRI +D ++ + + Q ISH LHRHEPPV + + I
Sbjct: 31 VFLVQAETDPYYLQKAAIDGGRITIDGKVATADSIINNGQVISHTLHRHEPPVTSRPIKI 90
Query: 145 LQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILA 203
+ ++ D++ + KP +PVHP G+Y N+++ I+++E L + +P +RLDRL SG++ L
Sbjct: 91 IHEDEDIIVIDKPAGIPVHPAGRYNYNSIIEIMRSERGLGWIPYPCNRLDRLTSGIMFLG 150
Query: 204 RNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD---------VNINYNASAGRST 254
++ A+ Q + + + K YIARV G FP+G + D + +N + G+
Sbjct: 151 KHPKAAEQMAQSLRSRTLRKEYIARVKGYFPDGVVLCDQPMLKVSPILGLNRVRATGKDA 210
Query: 255 A----------------ESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
++G++ G +A+ + +SIV C P+TGRTHQ
Sbjct: 211 QTKFRRIAYYPPVEKEDKNGEATGTQGPDSRASTPPPLPADVDEGYSIVHCLPLTGRTHQ 270
Query: 299 IRVHLQYTGYPIANDMLY 316
IRVHLQ+ G+PI ND +Y
Sbjct: 271 IRVHLQFLGHPITNDPIY 288
>gi|198461946|ref|XP_001352285.2| GA19422 [Drosophila pseudoobscura pseudoobscura]
gi|198142379|gb|EAL42449.2| GA19422 [Drosophila pseudoobscura pseudoobscura]
Length = 321
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 104/174 (59%), Gaps = 18/174 (10%)
Query: 148 EPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNAS 207
+ D++ V KP S+PVHPCG+YR NTVV IL H+L L +HRLDRL SGLLI R +
Sbjct: 2 DEDIVVVNKPASIPVHPCGRYRHNTVVFILAKSHNLKNLRTIHRLDRLTSGLLIFGRTSK 61
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVN-----INYNASAGRSTAESGDSLG 262
KA QQI +V K Y+ RV G FP+G +++ N ++Y R +
Sbjct: 62 KARELEQQIRNRQVQKEYVCRVEGRFPDG--IIECNEPIQVVSYKIGVCRVSP------- 112
Query: 263 DTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK T F RIS G SIVLC+P+TGR HQIRVHLQY GYPI ND LY
Sbjct: 113 ----NGKDCRTTFRRISEVGDCSIVLCKPLTGRMHQIRVHLQYLGYPIVNDPLY 162
>gi|328351783|emb|CCA38182.1| hypothetical protein PP7435_Chr2-0494 [Komagataella pastoris CBS
7435]
Length = 327
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 141/250 (56%), Gaps = 24/250 (9%)
Query: 81 TIVDLFAEEFKGRPYDYYVSAVKCGRI-----------QVDEEMVPVSYTVKSSQKISHF 129
T++D+F EFK R +YY + G I Q ++ + S +KS + +
Sbjct: 2 TVLDVFCNEFKSRSEEYYRLNIDNGTIKLIRNRGLATEQTIDKSLLYSTLIKSGDCVVNT 61
Query: 130 LHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPV 189
H+HEP V + I+ ++ ++L V KP VPVHP G+Y NT+ I++ E ++ L+P
Sbjct: 62 EHKHEPEVGIGE-EIVYQDDNILVVNKPCGVPVHPTGKYYYNTMTEIMKNELGVSSLYPC 120
Query: 190 HRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVV-DVNINYNA 248
HRLDRL SG+LI+ + A ++ Q++ + K YIARV+G FP G V D +N +
Sbjct: 121 HRLDRLTSGILIIGKTPRAAAKYQTQLKQNSIQKTYIARVDGEFPMGNIVCSDKIVNIDC 180
Query: 249 SAGRSTAESGDSLGDTPLKGKAACTKFTRI--STNGTHSIVLCEPITGRTHQIRVHLQYT 306
G+ E+G + + K A T F R+ ST+ SIV C P TGRTHQIR+HL+
Sbjct: 181 KRGK---ENGIT------EPKEALTNFQRLAYSTSLNQSIVKCSPKTGRTHQIRIHLRNL 231
Query: 307 GYPIANDMLY 316
G+PIAND LY
Sbjct: 232 GHPIANDPLY 241
>gi|332024709|gb|EGI64898.1| RNA pseudouridylate synthase domain-containing protein 2
[Acromyrmex echinatior]
Length = 335
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 102/170 (60%), Gaps = 14/170 (8%)
Query: 150 DVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKA 209
DV+ V KP S+PVHPCG+YR NTVV IL E++L L +HRLDRL SG+L+ R KA
Sbjct: 4 DVVVVNKPASIPVHPCGRYRHNTVVFILAKEYNLKNLRTIHRLDRLTSGILLFGRTPKKA 63
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI---NYNASAGRSTAESGDSLGDTPL 266
QI +V K+Y+ RV G FPE E + I +Y + +
Sbjct: 64 RQMEHQIRNRQVHKQYVCRVEGEFPEEEVICSEPIEVVSYKIGVCKVSE----------- 112
Query: 267 KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
KGK T+F R+S NG S+VLC+P TGR HQIRVHLQY GYP+ ND LY
Sbjct: 113 KGKDCVTRFKRLSYNGKSSVVLCKPQTGRMHQIRVHLQYLGYPVVNDPLY 162
>gi|50290395|ref|XP_447629.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526939|emb|CAG60566.1| unnamed protein product [Candida glabrata]
Length = 411
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 179/380 (47%), Gaps = 52/380 (13%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRI----- 107
Y ++ G R + PYY + VK RW +T++D+ +EF+ +YY + G+
Sbjct: 6 YYYQSGLRKIYPYYHTRTAFVKGRWHNRTVLDVLVKEFRAHSAEYYGHQIVNGKYKLIRD 65
Query: 108 -QVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-------------DVSILQKEPDVLT 153
Q + + + +K++ K+ +H+HEPPV+ W + I+ ++ ++L
Sbjct: 66 GQYLDNLSVLDTPIKNNDKLESTVHKHEPPVLQWCSNEANIPGKKIAGIDIVYEDENLLV 125
Query: 154 VCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFR 213
+ KP +P+HP G Y NT+ IL+ A P +RLD++ SGLLIL+++ A + +
Sbjct: 126 INKPCGIPIHPTGLYYGNTLTEILKVNGVHA--LPAYRLDKVTSGLLILSKDTGTASMVQ 183
Query: 214 QQIEAGKVIKRYIARVNGVFPEGEQV----------VDVNINYNASAGRS--TAESGDSL 261
++I + ++ K Y+ARV G FP +V +D+ I S T E D
Sbjct: 184 KKIRSHEMQKWYLARVEGAFPHVNEVPHIETLEIQRLDLPIEEQIIQDNSILTIEDSDVY 243
Query: 262 GDTPLKG--------KAACTKFTRIST--NGTHSIVLCEPITGRTHQIRVHLQYTGYPIA 311
P K ++A T F I + SIV C PITGRTHQIR+HL +PI
Sbjct: 244 TVEPKKQYPSGLSVPRSAKTIFYPIKYFPHKNESIVACRPITGRTHQIRIHLARLNHPIV 303
Query: 312 NDMLYLCEHVTHREGMSADRAAAYSHHSPPPVSSDKSES------SSEDFSIDPMC--TN 363
ND +Y + + E ++ R+ A + + SE+ SE F + N
Sbjct: 304 NDTIYSQKITRYPERLNFIRSIA-NWSEAKLTDEELSETFQIFIQESEHFKKKALAENKN 362
Query: 364 CPNLAPKGKRLLSSNSLEDL 383
CP + G LS EDL
Sbjct: 363 CPVCSECGALTLSDPDPEDL 382
>gi|255086821|ref|XP_002509377.1| predicted protein [Micromonas sp. RCC299]
gi|226524655|gb|ACO70635.1| predicted protein [Micromonas sp. RCC299]
Length = 179
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 111/179 (62%), Gaps = 6/179 (3%)
Query: 47 PPVKEDYIF-RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCG 105
PP DY+F DG R V PY F+F+ HVK R AG +V +FA+EF R YY +A G
Sbjct: 1 PPAPGDYVFPGDGTRLVIPYPFDFVCHVKARHAGANVVAMFAKEFPARDRGYYEAAHAAG 60
Query: 106 RIQV----DEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
++ D+E V + + +++ H+LHRHEPPV+ V ++ D++ V KP ++P
Sbjct: 61 YLRGMSGGDDETVEPLRPLAAGERVRHWLHRHEPPVLDHPVDVVAVTDDLVAVHKPATMP 120
Query: 162 VHPCGQYRKNTVVGILQA-EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
VHP GQYRKNTV+G+L A DL L P HRLDR VSGLL++ARNA A R+ + G
Sbjct: 121 VHPTGQYRKNTVLGVLAATRRDLGRLSPAHRLDRNVSGLLLMARNARTASALREALAEG 179
>gi|255711220|ref|XP_002551893.1| KLTH0B02376p [Lachancea thermotolerans]
gi|238933271|emb|CAR21455.1| KLTH0B02376p [Lachancea thermotolerans CBS 6340]
Length = 397
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 144/288 (50%), Gaps = 28/288 (9%)
Query: 55 FRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV 114
F +G R +KPY+ +S K RW +T++D+ ++EF+ + Y + + Q+ +
Sbjct: 8 FANGLRKIKPYHHSRLSFAKGRWLDRTLLDVLSDEFRANTKEEYEKGILQKKFQIIRDGA 67
Query: 115 PVSY------TVKSSQKISHFLHRHEPPVMAW------------DVSILQKEPDVLTVCK 156
+S +++ I H+HEPPV W + ++ + D+L + K
Sbjct: 68 ELSVEEVLKGQIRNKDVIRTTSHKHEPPVRQWAKEENSGLGWVAGMKVVHECEDLLVIDK 127
Query: 157 PPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
P +P+HP GQY +NT+V +L++ +FP HRLD++ SG+LIL +N A+ + QI
Sbjct: 128 PSGIPIHPTGQYYQNTLVEVLKSHGKT--VFPSHRLDKITSGVLILTKNPHMANKIQHQI 185
Query: 217 EAGKVIKRYIARVNGVFPEGEQVVDV------NINYNASAGRSTAESGDSLGDTPLKGKA 270
+ K Y+ARV+G FP + + + + + T E +
Sbjct: 186 RQRTMSKIYLARVDGAFPMADTLGSLTPFESPDKTQTVDSAIYTVELKKQFPAAFSPPRE 245
Query: 271 ACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A TKF + ++V C+PITGRTHQIR+HL G+PI ND Y
Sbjct: 246 AKTKFYPLKYYPKSDETLVACQPITGRTHQIRIHLARLGHPIVNDPFY 293
>gi|399215807|emb|CCF72495.1| unnamed protein product [Babesia microti strain RI]
Length = 472
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 147/319 (46%), Gaps = 39/319 (12%)
Query: 37 MEIVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYD 96
M I Q P + Y+ R V PY EFI+ K RW G+ I ++ +EF D
Sbjct: 45 MYIHAQLPYVESLSFPYVKVQNLRVVPPYEHEFIACAKGRWLGRPIYEILRDEFISMDSD 104
Query: 97 YYVSAVKCGRIQVDEE----MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVL 152
+ GR+ V + + Y VKS I H + EPP +A I+ P VL
Sbjct: 105 GLADSFSEGRVLVKRDGTITKCDMGYIVKSGDVIYHKVVVQEPPCLALAPKIVMDLPLVL 164
Query: 153 TVCKPPSVPVHPCGQYRKNTVVGILQAE----HDL----------------APLFPVHRL 192
KP +PV+P G YR NT+ +L+ E H + L P+HR+
Sbjct: 165 VASKPVGLPVYPTGTYRYNTLTKVLKIEQFNDHSVQNADKFFDGKRVVESNIQLLPLHRI 224
Query: 193 DRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNIN------- 245
DRLVSG+++ A+ A Q+I G+V K Y+ARV G FPE + +N N
Sbjct: 225 DRLVSGIVVFAKTTEVASYLSQEIAHGRVQKIYLARVVGKFPENATNLPLNDNGVFVGKG 284
Query: 246 YNASAGRSTAESGDSLGDTP------LKGKAACTKFTRISTNGT--HSIVLCEPITGRTH 297
Y R S TP ++ K A T F +S N S++LC P TGRTH
Sbjct: 285 YVIPIDRKNGIHKFSCEPTPESDEKDMRPKQAETHFRFLSYNKVLDESLILCYPQTGRTH 344
Query: 298 QIRVHLQYTGYPIANDMLY 316
QIR HLQY +PI+ND Y
Sbjct: 345 QIRAHLQYLNHPISNDPTY 363
>gi|440298171|gb|ELP90812.1| ribosomal large subunit pseudouridine synthase C, putative
[Entamoeba invadens IP1]
Length = 362
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 167/353 (47%), Gaps = 40/353 (11%)
Query: 51 EDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVD 110
E Y FRDG R V P Y + VK RW G+T+ LF EFK + ++ G + +
Sbjct: 5 ESYYFRDGLRCVIPNYKVLQTDVKGRWVGQTLKQLFTTEFKHISVEEAKRQIEGGIMYIK 64
Query: 111 EE----MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCG 166
+ + + T++ + +H HEPPV + I++ + L + KP +PVHP G
Sbjct: 65 RKDGTVVKSLDVTIEEHDILVSRIHAHEPPVPDHHIDIIEDTDEYLVINKPAGIPVHPTG 124
Query: 167 QYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI------EAGK 220
+Y N+++ IL+ E L V+RLD+ SG+L+LA+ A F++ + + +
Sbjct: 125 RYMYNSIITILKEEGKYNDLKLVYRLDKNTSGVLVLAKTKRIAQKFQKALRDKTVGDFQE 184
Query: 221 VIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRIST 280
+ K Y+ARV G FPE VVD I+ D +G +A + F RI
Sbjct: 185 IEKIYLARVVGEFPE-TLVVDKPIHLVVFGTEQQHHVSD-------EGISAKSGFKRIFY 236
Query: 281 NGTH--SIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHH 338
+ S+V C P TGRTHQ+R+HL+ G+PIAND YL EH+ + D
Sbjct: 237 DKASDTSVVECVPYTGRTHQLRLHLKSVGHPIANDSAYLLEHIHNTRTRDGD-------- 288
Query: 339 SPPPVSSDKSESSSEDFSIDPMCTNCPNLAPKGKRLLSSNSLEDLCYGHMRQY 391
+ + + + D C +C PKG + LE L + H +Y
Sbjct: 289 ----TEQELAMRTKYGWVFDEFCEDCN--CPKG------DPLEHLIWLHAWKY 329
>gi|428673269|gb|EKX74182.1| RNA pseudouridylate synthase, putative [Babesia equi]
Length = 435
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 156/289 (53%), Gaps = 21/289 (7%)
Query: 49 VKED-YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRI 107
VKE Y F+DG R V PY + + S VK RW GK++ + EF DY A K G+
Sbjct: 5 VKESPYRFKDGYRIVPPYEYLYKSFVKERWMGKSVHKVLLSEFAALSEDYIQHACKNGKF 64
Query: 108 QV----DEEMVP----VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPS 159
++ EE+ + + +K ++K+ H+ HE + V +++ D + V KP S
Sbjct: 65 KLYSKNGEELCKDSSVLDHILKPNEKLCHYAVVHEQLALDKPVRLIKNLEDYIVVSKPTS 124
Query: 160 VPVHPCGQYRKNTVVGILQAEH---DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
VPV+ G Y NT+V I++ E + L+P+HR+D+LVSG+++ A++++ A F Q I
Sbjct: 125 VPVYHTGTYHYNTLVEIMKYELPECENLRLYPIHRIDKLVSGVVVFAKSSNAASKFSQAI 184
Query: 217 EAGKVIKRYIARVNGVFPE-GEQVVDVNINYNASAGRSTAESG-DSLGDTPL-----KGK 269
+ V K Y+ARV G F +V + +Y S G A S D + + K K
Sbjct: 185 KELLVKKVYVARVCGDFRNINSNLVTLKDDYIISHGFMYALSKRDGKHEFTMECINSKCK 244
Query: 270 AACTKFTRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+F +S N S++LC P+TGRTHQIR HL++ GY I+ND Y
Sbjct: 245 PVETRFKFLSYNSDLDESLILCYPVTGRTHQIRAHLKHLGYSISNDQCY 293
>gi|167391242|ref|XP_001739694.1| ribosomal pseudouridine synthase [Entamoeba dispar SAW760]
gi|165896535|gb|EDR23920.1| ribosomal pseudouridine synthase, putative [Entamoeba dispar
SAW760]
Length = 378
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 151/298 (50%), Gaps = 33/298 (11%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F DG R V PYY EF +VK RW GK++ +++ EFK ++S + R Q++E+
Sbjct: 10 YFFEDGFRRVIPYYKEFKVNVKGRWVGKSVEEIYGSEFK------HISKEEIQR-QINEQ 62
Query: 113 MV------------PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSV 160
+ + ++ + H HEPPV ++ I++ P+ L + KP +
Sbjct: 63 ITYLINKNGIKKETSLHSVIEEHDILISKCHLHEPPVPIKEIKIIENTPEFLVINKPSGI 122
Query: 161 PVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG- 219
PVHP G+Y +N ++ IL EH + L PV+RLD+ SG+L+ A+ A F+ ++
Sbjct: 123 PVHPTGRYNQNCILNILLNEHHFSHLKPVYRLDKNTSGVLLFAKTKKFASSFQSFLKEKS 182
Query: 220 -------KVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAAC 272
+ K Y+ARV G FP+ + +N R ES +S+ + ++ K++
Sbjct: 183 SVFSSPSSLQKIYLARVVGYFPDF-----IEVNLPLHLIRFGTESQNSICEDGVEAKSSF 237
Query: 273 TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSAD 330
+ + S++ C P TGRTHQ+R+HL+ +PIAND YL + + D
Sbjct: 238 KRLF-FDKDSNTSVIECIPHTGRTHQLRLHLKAINHPIANDSAYLLNQIHNYRQQDGD 294
>gi|403216128|emb|CCK70626.1| hypothetical protein KNAG_0E03690 [Kazachstania naganishii CBS
8797]
Length = 354
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 140/264 (53%), Gaps = 17/264 (6%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV---DEEMV-P 115
R V+P + + K RW G+ +VD+ AEEFK + +++AV G+ + D M P
Sbjct: 3 RRVEPQWVSRRINAKGRWFGRLLVDVTAEEFKASSREQHLAAVTQGKYSLRARDGHMRNP 62
Query: 116 VSYTVKSSQKISHFLHRHEPPV-MAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV 174
+ + + +HRHEPP+ + + + L V KP +PVHP GQY +T+V
Sbjct: 63 LREPIVCGDVVHLSMHRHEPPIPLRGPPLVCHSDEQYLVVDKPCGIPVHPTGQYFHHTLV 122
Query: 175 GILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFP 234
L+A PL+P HRLDR+ SGL+I AR A ++ I+ +K Y+ARV G FP
Sbjct: 123 EQLRATQ--GPLWPCHRLDRVTSGLMIFARTPQAASKLQRAIQRHDAVKVYLARVQGKFP 180
Query: 235 EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPI 292
G +VD + Y R +LG + + A T+F I + + S+V C P
Sbjct: 181 GGVTLVDSPV-YTLEPKRGFPA---ALGPS----RDASTQFELIKYDASTGQSLVQCTPR 232
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGRTHQIR+HL G+PI ND LY
Sbjct: 233 TGRTHQIRIHLARLGFPIVNDQLY 256
>gi|367014827|ref|XP_003681913.1| hypothetical protein TDEL_0E04590 [Torulaspora delbrueckii]
gi|359749574|emb|CCE92702.1| hypothetical protein TDEL_0E04590 [Torulaspora delbrueckii]
Length = 406
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 151/299 (50%), Gaps = 35/299 (11%)
Query: 55 FRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV 114
F +G RN+ PYY + K RW +T++++ EF D Y+ +K G+ ++ E
Sbjct: 7 FANGVRNIVPYYHGRAAFAKGRWFKRTLLEVLVGEFSADSRDEYLEGIKNGKYRIIREGF 66
Query: 115 PV------SYTVKSSQKISHFLHRHEPPVMAW-------------DVSILQKEPDVLTVC 155
P+ + +++S + H+HEPPV W + I+ ++ ++L +
Sbjct: 67 PLPPEEVLTSPIRNSDVVETNSHKHEPPVKQWCDEEVDIPGKKVAGIDIVYEDENMLVLD 126
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQ 215
KP +P+HP GQ+ +NT+ IL+ + A P +RLD++ SGLLI+ + + A+ + +
Sbjct: 127 KPNGIPIHPTGQFYQNTLTEILKTRNKEAR--PCYRLDKVTSGLLIMGKTKAIANEIQAK 184
Query: 216 IEAGKVIKRYIARVNGVFPEGEQVV------------DVNINYNASAGRSTAESGDSLGD 263
I + + K Y+ARV+G FP+ E + D ++ A + T E S
Sbjct: 185 IRSRDMDKIYLARVSGKFPKSECLTRGIEDHLPTPFEDKSMITTADSATYTVELKKSFPA 244
Query: 264 TPLKGKAACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEH 320
K A T F R N ++V C+P+TGRTHQIR+HL G+PI ND Y E+
Sbjct: 245 GLSVPKTAATSFYPLRYFPNHNQTLVACKPLTGRTHQIRIHLARMGFPIVNDPFYNVEN 303
>gi|118362444|ref|XP_001014449.1| pseudouridine synthase, RluD subfamily protein [Tetrahymena
thermophila]
gi|89296216|gb|EAR94204.1| pseudouridine synthase, RluD subfamily protein [Tetrahymena
thermophila SB210]
Length = 446
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/277 (33%), Positives = 144/277 (51%), Gaps = 8/277 (2%)
Query: 46 NPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCG 105
N +K Y F R VK Y F +H K RW G I+++ +EF +YY +A++ G
Sbjct: 5 NNSIKPTYFFHGPFRFVKAYEHCFRTHSKGRWVGNPILEVLEKEFHAYTKEYYQNAIEKG 64
Query: 106 RIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPC 165
+I V+++ + Y K + HF R EPP++ ++ ++ +L + KPP + VH
Sbjct: 65 KILVNKQKQNIDYRFKHNDLFEHFTSRVEPPIINLLPKVIFEDDKLLVLSKPPYISVHAS 124
Query: 166 GQYRKNTVVGILQAEHDL-APLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKR 224
G + N++VG+L+ E L+ +HRLD+L SG+LI+A++ F + E + K
Sbjct: 125 GGFHFNSLVGLLKFEMGYNIELYVLHRLDKLTSGVLIMAKDRDLTKKFHES-ETELIKKT 183
Query: 225 YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA---CTKFTRI--S 279
Y+ARV+G F + I Y T D+ + +K K A T F +I
Sbjct: 184 YLARVHGNFNHQYLEYEKPI-YCIYKKVGTYAVLDTTDEEEIKSKGAKQSKTIFKKIWYD 242
Query: 280 TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
S++ C+PITGRTHQIRVHL G+PI ND Y
Sbjct: 243 EKSDSSLLECQPITGRTHQIRVHLSSLGFPIINDTQY 279
>gi|448084589|ref|XP_004195643.1| Piso0_005044 [Millerozyma farinosa CBS 7064]
gi|359377065|emb|CCE85448.1| Piso0_005044 [Millerozyma farinosa CBS 7064]
Length = 427
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 148/293 (50%), Gaps = 38/293 (12%)
Query: 54 IFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV---- 109
+ +G R V PY+F+F +HVK+RW G+T+ D+ +E G+ + G I +
Sbjct: 8 LIENGFRKVSPYFFDFKTHVKSRWVGRTLADIMIKEL-GQEESIIEKEISEGLIYISNNH 66
Query: 110 ---DEEMVPVSYTVKSSQK------ISHFLHRHEPPVMAW---DVSILQ----------K 147
D ++ +T+ + I H H HEP + W D S+L +
Sbjct: 67 GRKDPSILIKDWTILKDRNVEKHDIIYHIRHMHEPNI-PWPQGDKSLLDDSGKAFSTVYQ 125
Query: 148 EPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILA--RN 205
+ D+L V KPP +P HP +R NT I + L L+ HRLD+ SG+LILA R
Sbjct: 126 DSDILVVNKPPGIPSHPKSNFRCNTATEITKLGWHLENLWLCHRLDKATSGILILALNRE 185
Query: 206 ASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTP 265
K QIE G V K Y+ARV G FPE E V+ I +G S ++ P
Sbjct: 186 CCKEIADTMQIE-GSVRKEYLARVKGEFPEKEFYVNCPIFLINISGGYLMPSNET-KQIP 243
Query: 266 LKGKAACTKFTRISTNG--THSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
L A T+F R++ N S+V C PITGRTHQIR+HL+ G+PI+ND +Y
Sbjct: 244 L----AITQFERLTYNKDLDESLVSCRPITGRTHQIRIHLRNIGFPISNDYMY 292
>gi|294954338|ref|XP_002788118.1| ribosomal pseudouridine synthase, putative [Perkinsus marinus ATCC
50983]
gi|239903333|gb|EER19914.1| ribosomal pseudouridine synthase, putative [Perkinsus marinus ATCC
50983]
Length = 393
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 153/299 (51%), Gaps = 35/299 (11%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
+DG R VKPY FEF ++K RW GK ++D+ EF +P +YY +A+K G+I +D V
Sbjct: 34 KDGMRFVKPYRFEFRCYIKKRWLGKNLLDICEAEFMAQPPEYYENAIKEGKITIDFNKVE 93
Query: 116 VSYTVKSSQKISHFLHRHEPPV-MAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV 174
+ ++ ++ + H +E PV ++ I+ + DV+ V KP +PVH G +R N +
Sbjct: 94 PDHVLQGNELLIHETIVNENPVPFDGELKIVGETDDVVAVDKPSGMPVHSGGGHRVNCLS 153
Query: 175 GILQAE----HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEA--GKVIKRYIAR 228
IL+ + LA + +HRLDRL SG++IL +N A F + + ++ K Y+AR
Sbjct: 154 AILKEQDPSRFSLA-IHTLHRLDRLTSGIVILGKNPDVARAFSEAFKKHDQEIQKCYLAR 212
Query: 229 VNGVFPEGEQVVD-------------VNINYNASAGRSTAESGDSLGDTP---------- 265
V G F VV+ + + N A GD+ TP
Sbjct: 213 VKGKFEGSNVVVEGFMRCVDFRVGKFILVKSNKGTASEDANQGDAPTSTPSGDDKSAVEE 272
Query: 266 --LKGKAACTKFTRI--STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEH 320
++ K + T F ++ +I+ C P TGRTHQIRVHL+ G+PIAND Y E+
Sbjct: 273 EHIEDKWSQTSFDKVWYDEQNDETIIKCYPKTGRTHQIRVHLESIGHPIANDSCYGGEY 331
>gi|429965225|gb|ELA47222.1| RluA family pseudouridine synthase [Vavraia culicis 'floridensis']
Length = 362
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 140/255 (54%), Gaps = 24/255 (9%)
Query: 65 YYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ 124
Y++ F + VK RWAG+T++D+ + EF +P +YY A++ G I V+ E + + +
Sbjct: 4 YFYRFDTQVKGRWAGRTLIDVMSNEFIMKPVEYYDKAIQIGNITVNSEECSKYHILSLGE 63
Query: 125 KISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLA 184
I H +H HEP + D+ +L E D L V KP + HP Y +V ++ +L+
Sbjct: 64 TIQHLVHYHEPDLC--DIGVLCLEDDYLVVNKPSGIACHPTSGYNLFSVTKAFESYGNLS 121
Query: 185 PLFPVHRLDRLVSGLLILA-RNASK--ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
++RLD L SG+LILA RNA K ++ ++IE K Y+A+V G F + D
Sbjct: 122 ---CINRLDVLTSGVLILAFRNAKKYHTEMINRRIE-----KIYVAKVKGHFHD-----D 168
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
+ +N R ++ + +GK A T F R+ + HS+V C P+TGR+HQIRV
Sbjct: 169 ITVNAPLKKNRF------NVTEVSEEGKEATTVFKRLFYHNGHSLVECRPLTGRSHQIRV 222
Query: 302 HLQYTGYPIANDMLY 316
HL+ +PI ND +Y
Sbjct: 223 HLKSLNFPIVNDPVY 237
>gi|449019937|dbj|BAM83339.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 409
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 116/360 (32%), Positives = 177/360 (49%), Gaps = 52/360 (14%)
Query: 44 PANPPVKEDYIFRDGR--RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSA 101
P+ PPV + + R R V PY F + +VK RW G T+ D+F +EF G +++ +
Sbjct: 20 PSTPPV----VVTNWRSLRYVAPYLFTYRVNVKERWLGTTLTDVFTKEFYGT-REFWANQ 74
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-SILQKEPDVLTVCKPPSV 160
+K GR+ V+ + Y ++ + I + +H HE PV A DV ++ ++PD + V KP +
Sbjct: 75 MKHGRLLVNGASIAADYVLQPADTILNTVHFHEAPVSATDVPRVIDEQPDWVAVYKPAGI 134
Query: 161 PVHPCGQYRKNTVVGILQ---AEHD--LAP-LFPVHRLDRLVSGLLILARNASKADLFRQ 214
P H GQ+R +++ L +EH AP L+ ++RLDR+ SG+++ A+N A + Q
Sbjct: 135 PTHVSGQFRYHSLTAWLSRLLSEHHQRTAPALYTLYRLDRVTSGVVVFAKNVELARRWHQ 194
Query: 215 QIEAG-----KVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
G + K Y+AR+ G F E + R S D GK
Sbjct: 195 HASGGNRSVPRHRKVYLARLQGRFREA-----LTCRVPLRLDRGEQGYARSFPDFQ-SGK 248
Query: 270 AACTKFTRIS--TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY-----LCEHVT 322
A+ T F + T S+V C P+TGRTHQIR H + G+P+AND LY E+ T
Sbjct: 249 ASITLFKPLGYDTRTDTSLVECVPVTGRTHQIRAHAAFLGHPVANDALYGGTLAADEYTT 308
Query: 323 HREGMSADRAAAYSHHSPPPVSSDKSESSSE--------DFSI-DPMCTNCPNLAPKGKR 373
+ AD A + + +S SS+E D + DP+C +CP AP R
Sbjct: 309 ----VVADAIAGM-------LGTGESRSSAEPTLMQLFPDLQVADPLCHHCPYAAPVRWR 357
>gi|156089749|ref|XP_001612281.1| RNA pseudouridylate synthase family protein [Babesia bovis]
gi|154799535|gb|EDO08713.1| RNA pseudouridylate synthase family protein [Babesia bovis]
Length = 465
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 149/295 (50%), Gaps = 31/295 (10%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE- 111
Y F+DG R V PY + S+ K RW + + D+ EF +Y A G I+V +
Sbjct: 55 YYFKDGFRIVLPYNHVYESYTKGRWFKRRLYDVLRAEFAAFTDEYIKHACVHGLIKVYDR 114
Query: 112 ---EMVP------VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
++ P + + + ++KI H HE + V IL ++ D + V KP S+P+
Sbjct: 115 EGNDLYPDPGDYVLEHICRPNEKIWHLALVHEQMALDSSVRILHEDDDYIAVSKPSSLPL 174
Query: 163 HPCGQYRKNTVVGILQAE--HDLA-PLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
+ G Y NT+V +L+ E D A L+PVHRLD+L SG++ILA+++ A F + I
Sbjct: 175 YHTGTYYYNTLVEVLKNEVFKDSARTLYPVHRLDKLTSGVIILAKSSKAASEFCEGIRNS 234
Query: 220 KVIKRYIARVNGVFPE---GEQVVDVNINYNASAGRSTAESGD-------------SLGD 263
+ K YIARV G F + + +N G G +L D
Sbjct: 235 RFRKVYIARVKGDFTNVFGDHECISINDGIGVGNGSVACCHGFMRCVSHKLSMHEFTLDD 294
Query: 264 TPLKGKAACTKFTRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T K A T+F +S N + S++LC P+TGRTHQIR HL+Y GYPI+ND Y
Sbjct: 295 TKKDVKVAETRFRMLSYNSSLDESLLLCYPVTGRTHQIRAHLKYLGYPISNDKCY 349
>gi|268563128|ref|XP_002646857.1| Hypothetical protein CBG19546 [Caenorhabditis briggsae]
Length = 356
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 118/195 (60%), Gaps = 1/195 (0%)
Query: 48 PVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRI 107
P+K + DG R++ PY+ + + K RW G+ +V++FA EF Y A K GRI
Sbjct: 59 PMKVPFKIIDGIRHLSPYWSCYRTRTKGRWIGRKMVEVFAGEFLSTNKHYAKVACKMGRI 118
Query: 108 QVD-EEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCG 166
V+ E+M V Y +K+ ++ H++HRHE PV + I+ + D+L + KPPS+PVH CG
Sbjct: 119 YVNGEQMTDVDYVMKNGDRVEHWVHRHEHPVRDLPIRIISETDDLLVIEKPPSLPVHTCG 178
Query: 167 QYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYI 226
QY +TV+G L+ + L +HRLDR SG+L+ A+N F+ ++ G+ K Y+
Sbjct: 179 QYAIHTVLGQLRENEEKTGLRVLHRLDRATSGVLLFAKNYETDLEFKTTLKQGEWSKEYV 238
Query: 227 ARVNGVFPEGEQVVD 241
+V+GVFP+ EQV +
Sbjct: 239 CKVDGVFPDEEQVCE 253
>gi|444318599|ref|XP_004179957.1| hypothetical protein TBLA_0C06450 [Tetrapisispora blattae CBS 6284]
gi|387512998|emb|CCH60438.1| hypothetical protein TBLA_0C06450 [Tetrapisispora blattae CBS 6284]
Length = 378
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 144/292 (49%), Gaps = 48/292 (16%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV------ 109
R+G R VKPYY SHVK RW G+ + + EFK + V + CG I++
Sbjct: 8 RNGLRFVKPYYSTRQSHVKGRWLGRALPTVLENEFKMS-FKKGVKQITCGDIKLMRSPPG 66
Query: 110 ------------DEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----------DVSILQ 146
+E++ P + S H+HEPPV W V I+
Sbjct: 67 SSSRVLSVEETLNEKITPADILISRS-------HKHEPPVPQWPSCGDLVENILGVPIVF 119
Query: 147 KEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNA 206
K ++L + KP +PVHP GQY NT+ +L+ D L P RLD+ SGLL+LAR+
Sbjct: 120 KSSNLLVIDKPSGLPVHPTGQYFYNTLTKVLEL-GDFPSLRPAFRLDKPTSGLLVLARDT 178
Query: 207 SKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL 266
A +++I+ V K Y ARV G F D+ +++++S T E +
Sbjct: 179 ETAGTIQKKIKEHSVTKLYFARVKGKFQ------DIPLSHSSSI--FTIELKRTFDGAFS 230
Query: 267 KGKAACTKFT--RISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ A T+F+ + S SI+LC+PITGRTHQIR+HL G+PI ND +
Sbjct: 231 IPRDATTEFSLWKYSPKLDESIILCKPITGRTHQIRIHLARLGFPIINDPFF 282
>gi|254580497|ref|XP_002496234.1| ZYRO0C13684p [Zygosaccharomyces rouxii]
gi|238939125|emb|CAR27301.1| ZYRO0C13684p [Zygosaccharomyces rouxii]
Length = 398
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 150/299 (50%), Gaps = 32/299 (10%)
Query: 55 FRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE-- 112
F G R ++PYY + + K RW +T++D+ EF+ ++Y++ +K G + + E
Sbjct: 7 FSRGLRKIRPYYHKRTAFAKGRWFQRTLLDVMVNEFRSYSENHYLTEIKKGNLAIIREGK 66
Query: 113 -MVP---VSYTVKSSQKISHFLHRHEPPVMAWD-------------VSILQKEPDVLTVC 155
+ P +S ++++ + H+HEPPV+ W I+ + ++L +
Sbjct: 67 TLDPSEVLSSPIRNNDTVQTLRHKHEPPVLQWSENEEDIPGIKVAGFDIVHENDNLLVLN 126
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQ 215
KP +P+HP GQ+ +NT+ IL+ A P +RLD+L SGLLI+A+N A + +
Sbjct: 127 KPSGIPIHPTGQFYQNTITEILKRHGKTA--LPCYRLDKLTSGLLIMAKNTETAGGIQLK 184
Query: 216 IEAGKVIKRYIARVNGVFPE--GEQVVDVNINYNASAGRSTAESGDSL---------GDT 264
I + K Y+ARV G FP E + I + + ES G +
Sbjct: 185 IRDHDMSKYYLARVKGKFPHSSSEDFYEPPIPFQDPLLVTQEESPVYTVEPKKQFPSGLS 244
Query: 265 PLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTH 323
P+K + + S+V+C+P+TGRTHQIR+HL G+PI ND Y ++V +
Sbjct: 245 PVKDARTSFYPLKYFPHCDQSLVVCKPLTGRTHQIRIHLARLGHPIVNDPFYNIDNVEY 303
>gi|156844376|ref|XP_001645251.1| hypothetical protein Kpol_1060p49 [Vanderwaltozyma polyspora DSM
70294]
gi|156115910|gb|EDO17393.1| hypothetical protein Kpol_1060p49 [Vanderwaltozyma polyspora DSM
70294]
Length = 405
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 158/345 (45%), Gaps = 43/345 (12%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVD- 110
D + +G RN+ PY + S+ K RW G ++ + +EF+ + D Y+ +K GR ++
Sbjct: 4 DVYYANGLRNIIPYLSKRSSYAKGRWVGLPLLTVLTKEFRKQGPDEYLKGIKSGRYKIRR 63
Query: 111 -----EEMVPVSYTVKSSQKISHFLHRHEPPVMAW----------------DVSILQKEP 149
E + ++ I H HEPPV W + I+ ++
Sbjct: 64 GDRFLEVQDVLELPIEHKDIIGMTTHNHEPPVKQWCTSIEEENSIVEGKIGGIDIVYEDD 123
Query: 150 DVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKA 209
++L V KP +PVHP GQY NT+ IL+ L P +RLD+ SGLLI+A+N A
Sbjct: 124 ELLVVNKPSGIPVHPTGQYYLNTLTEILKKHGKLVS--PCYRLDKTTSGLLIMAKNQIIA 181
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQV-VDVNINYNASAGRSTAESGDSLGDTPL-- 266
+++I + K Y+ARV G FP+ +V D+ + R + S D+ +
Sbjct: 182 SKLQEKIRVHDMTKLYLARVEGQFPKILEVPTDLILTQEMILERIMTPALKSSVDSDIFT 241
Query: 267 ------------KGKAACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAN 312
+ A T F + + SIVLC+P+TGRTHQIR+HL G+PI N
Sbjct: 242 LELKKQFPAGLSPSREAKTDFYPVKYIPDLDQSIVLCKPLTGRTHQIRIHLARLGFPIVN 301
Query: 313 DMLYLCEHVTH--REGMSADRAAAYSHHSPPPVSSDKSESSSEDF 355
D Y H + R + A+ PP +K + E+
Sbjct: 302 DHFYNLRHSKYPKRSRFLLELASWEKSGLPPSTLKEKFDQLEEEL 346
>gi|363756212|ref|XP_003648322.1| hypothetical protein Ecym_8220 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891522|gb|AET41505.1| Hypothetical protein Ecym_8220 [Eremothecium cymbalariae
DBVPG#7215]
Length = 379
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 28/283 (9%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVK---CGRIQ 108
+Y ++G R +KPY+ S VK RW KT+ + EEF D S +K G I+
Sbjct: 2 EYHVQNGLRKIKPYWHTRSSFVKGRWFNKTLAQVLVEEFHFTN-DEVQSRIKKGLYGLIR 60
Query: 109 VDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-------------DVSILQKEPDVLTVC 155
+ + S +++ + H HEPPV+ W + I+ ++ +L +
Sbjct: 61 DNTSLDCNSELIRNKDVFTSKQHNHEPPVLQWRLNADDSVTKNVMGIPIVYEDDSILVIN 120
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQ 215
KP +P+HP Y KNT+ +L+ + P+FP HRLD++ SG+LI A+N A + + Q
Sbjct: 121 KPCGIPIHPIAYYYKNTLTEMLKDNLNY-PVFPCHRLDKITSGILIFAKNQDTASVLQAQ 179
Query: 216 IEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKF 275
I + K Y+ARV G F + I T E +L + K + T+F
Sbjct: 180 IRERTMKKLYLARVEGEFSKNGACSKYPI--------YTFEPKKTLAGAFSQVKDSETEF 231
Query: 276 TRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
RI N + S+VLC+P +GRTHQIR+HL G+PI ND Y
Sbjct: 232 LRIDYNESLNQSLVLCKPFSGRTHQIRIHLARLGHPIVNDPFY 274
>gi|429963336|gb|ELA42880.1| RluA family pseudouridine synthase [Vittaforma corneae ATCC 50505]
Length = 321
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 139/267 (52%), Gaps = 21/267 (7%)
Query: 65 YYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ 124
Y+ + +HVK RW + +VD+ EF+ R YY+ A++CG I V+++ Y +K
Sbjct: 6 YFHTYKTHVKQRWRNRHLVDVLESEFRTRSRKYYIGAIECGVITVNDQKTSPMYLLKDLD 65
Query: 125 KISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLA 184
I H +H HEP + ++ I++KE D V KP +P HP G Y + +V L + +
Sbjct: 66 VIRHIVHIHEP--IPPNIDIIEKESDYWVVNKPSGIPCHPTGGYFEYSVTRALFKDQSVG 123
Query: 185 PLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI 244
V+RLD VSG+LIL + S F + G K YIA+V G FP +I
Sbjct: 124 ---CVNRLDMPVSGVLILTFSNSN---FAHNL-LGSAEKVYIAKVKGEFPS-------SI 169
Query: 245 NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
+ G +A + D GK + T F + +S+V C P+TGRTHQIR+H +
Sbjct: 170 TVDKPVGLVSAR----MFDVSDSGKPSRTTFRLLEYRNGYSLVECRPVTGRTHQIRIHCK 225
Query: 305 YTGYPIANDMLYLCEHVTHR-EGMSAD 330
G+PI ND+LY E T + EGM +
Sbjct: 226 CIGFPILNDLLYGQESNTIKSEGMQPE 252
>gi|149247844|ref|XP_001528310.1| hypothetical protein LELG_00830 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448264|gb|EDK42652.1| hypothetical protein LELG_00830 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 430
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 155/292 (53%), Gaps = 34/292 (11%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y FR+G R+V PYY +HVK RW GKT++D++ E G D ++ + ++ + +
Sbjct: 4 YEFRNGFRSVLPYYTTHNTHVKKRWVGKTLLDVYQREL-GEAKDVVINDIINEKLYISDN 62
Query: 113 M-------VPVSYTVKSSQKISH------FLHRHEPPVMAWD---VSILQKEPDVLTVCK 156
+ V V S +KI HRHEP ++ W +S++ ++ D++ + K
Sbjct: 63 VGTTKPTQVIKGIEVLSERKIQEKDVITCTQHRHEPKIV-WPENPISVVFEDDDIIVIDK 121
Query: 157 PPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
P +PVHP G Y N++ I++ + ++ HRLD++ SG++IL +N A F +
Sbjct: 122 PSGIPVHPTGSYMFNSLSEIVKEMFNFDNIWTCHRLDKVTSGVVILCKNRDAAVKFLNIL 181
Query: 217 --EAGKVIKRYIARVNGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAA 271
++ KV K Y+ARVNG FP+G + +N N S ES +L
Sbjct: 182 LEKSDKVKKIYLARVNGKFPDGVYRYTCPILAVNMNGYIQPSNLESLLTL---------T 232
Query: 272 CTKFTRISTNGTH--SIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
T F R++ + SIV C+PI+G+ HQIR+HL+ G+PI+ND+ Y + V
Sbjct: 233 STIFERVNFDSLSNTSIVRCQPISGKFHQIRIHLRNLGFPISNDLFYKTQDV 284
>gi|71033777|ref|XP_766530.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353487|gb|EAN34247.1| hypothetical protein, conserved [Theileria parva]
Length = 436
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 153/303 (50%), Gaps = 30/303 (9%)
Query: 50 KEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV 109
+E Y F DG R V PY + + VK RW GK + + +EF DY A+ I+V
Sbjct: 35 EEPYRFVDGFRLVVPYSNVYKTFVKERWLGKPLQKVLKDEFAAFTPDYINFAINKNNIKV 94
Query: 110 ----DEEMVPVS-----YTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSV 160
EE+ S + +K +++I H HEP + ++ ++ + + + V KP S+
Sbjct: 95 ILQNGEELDNTSENVLDHILKPNERIIHEAIVHEPVALNSNIPVVWENEEYIVVSKPTSI 154
Query: 161 PVHPCGQYRKNTVVGILQAEHDLA---PLFPVHRLDRLVSGLLILARNASKADLFRQQIE 217
PV+ G Y+ N+++ I++ E LF +HR+D+LVSGL+ A++A+ A Q I
Sbjct: 155 PVYQTGTYKYNSLMEIMRRELPSCRGIKLFTIHRIDKLVSGLVAFAKSANSASELSQAIR 214
Query: 218 AGKVIKRYIARVNGVFP---------EGEQVVDVNINYNASAGRSTAES---------GD 259
+V K YIARVNG F G++ D N S G S G+
Sbjct: 215 DNEVKKVYIARVNGDFSHLLNNSHRDSGDKSDDSLENVFESVGYMRVISKKEGRYEFVGE 274
Query: 260 SLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCE 319
+ D K KF + + + S+VLC PITGRTHQIR +L+Y G+PI+ND Y E
Sbjct: 275 NAEDESYKPSVTRFKFIKYNKDLDESLVLCSPITGRTHQIRANLRYLGHPISNDPWYNNE 334
Query: 320 HVT 322
+T
Sbjct: 335 ELT 337
>gi|448080109|ref|XP_004194544.1| Piso0_005044 [Millerozyma farinosa CBS 7064]
gi|359375966|emb|CCE86548.1| Piso0_005044 [Millerozyma farinosa CBS 7064]
Length = 427
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 145/294 (49%), Gaps = 40/294 (13%)
Query: 54 IFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEF------------KGRPYDYYVSA 101
+ +G R V PY+F+F +HVK+RW G+T+ D+ +E +G Y
Sbjct: 8 LIENGFRKVSPYFFDFKTHVKSRWVGRTLADIMIKELGQEESIIEKEISEGLIYISNNHG 67
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW---DVSILQ----------KE 148
K I + + + V+ I H H HEP + W D S+L ++
Sbjct: 68 RKEPSILIKDWNILKDRNVEKHDIIYHSRHMHEPNI-PWPQGDKSLLNDSGKAFSTVYQD 126
Query: 149 PDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARN--- 205
D+L V KPP +P HP +R NT I + L+ HRLD+ SG+LILA N
Sbjct: 127 SDILVVNKPPGIPSHPKSNFRYNTATEITKMGSHSENLWLCHRLDKATSGILILALNREC 186
Query: 206 -ASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDT 264
AD+ + + G V K Y+ARV G FPE V+ I +G S ++
Sbjct: 187 CKEIADIMQTE---GSVRKEYLARVKGEFPEKPFYVNCPIFLINISGGYLMPSNET-KQV 242
Query: 265 PLKGKAACTKFTRISTNG--THSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
PL A T+F R++ N S+V+C PITGRTHQIR+HL+ G+PI+ND +Y
Sbjct: 243 PL----AITQFQRLTYNKDLNESLVICRPITGRTHQIRIHLRNIGFPISNDYMY 292
>gi|255636627|gb|ACU18651.1| unknown [Glycine max]
Length = 160
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/112 (67%), Positives = 86/112 (76%), Gaps = 7/112 (6%)
Query: 267 KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHR-- 324
KGKAA TKFTRISTNGT SIVLCEPITGRTHQIRVHLQY+G+PIANDMLY+ E R
Sbjct: 16 KGKAASTKFTRISTNGTQSIVLCEPITGRTHQIRVHLQYSGHPIANDMLYISEQTVDRSV 75
Query: 325 EGMSADRAAAYSHHSPPPVSSDK-----SESSSEDFSIDPMCTNCPNLAPKG 371
+G+SADR+A S S ++K E+S+ DF IDPMCTNCPNLAPKG
Sbjct: 76 KGLSADRSARISGVSLTSNFNEKVLNECEENSNGDFGIDPMCTNCPNLAPKG 127
>gi|354546496|emb|CCE43226.1| hypothetical protein CPAR2_208710 [Candida parapsilosis]
Length = 433
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 145/288 (50%), Gaps = 27/288 (9%)
Query: 48 PVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRI 107
P+ Y+F +G R V PYY + +H K RW G+T++D + +F G + + ++ ++
Sbjct: 28 PLMPKYVFENGLRKVLPYYVNYQTHAKQRWVGRTLLDTYINDF-GESAESVIKDIEQCKL 86
Query: 108 QVDEEM-------------VPVSYTVKSSQKISHFLHRHEPPVMAW--DVSILQKEPDVL 152
+ + V S V+S I H H+HEP + W ++ I+ ++ +++
Sbjct: 87 YIVSNVGTSLPSESLTGFDVLSSRKVESKDVIHHLKHKHEPAI-PWHGEIPIVYEDEEII 145
Query: 153 TVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLF 212
V KP +P HP G Y NT+ +++ + ++ HRLD++ SG+LIL ++ + A F
Sbjct: 146 VVNKPSGIPTHPSGNYNCNTLSEVVKDMYGFDSIWTCHRLDKVTSGILILCKSRNSAVKF 205
Query: 213 RQ--QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKA 270
Q + +V K Y+ARV G FP G+Q+ YN GD
Sbjct: 206 SNLLQDKRNRVRKVYLARVKGEFPVGKQI------YNCPIFAVNMNGYLQPGDLKNLQAD 259
Query: 271 ACTKFTRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F I + S+V C+PI+G+ HQIR+HL+ G+PI+ND Y
Sbjct: 260 TTTIFQSIKYSKILDESVVKCQPISGKFHQIRIHLRNLGFPISNDHFY 307
>gi|45201401|ref|NP_986971.1| AGR305Wp [Ashbya gossypii ATCC 10895]
gi|44986335|gb|AAS54795.1| AGR305Wp [Ashbya gossypii ATCC 10895]
gi|374110222|gb|AEY99127.1| FAGR305Wp [Ashbya gossypii FDAG1]
Length = 381
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 143/282 (50%), Gaps = 27/282 (9%)
Query: 51 EDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVD 110
E Y+ ++G R + PY+ S VK RW G+T+ + EEF + + + G Q+
Sbjct: 2 EPYV-QNGLRKLAPYWNTRSSFVKGRWYGRTLAQVLMEEFHFSS-EQVQAKILAGHCQLL 59
Query: 111 EEMVPV---SYTVKSSQKISHFLHRHEPPVMAW-----------DVSILQKEPDVLTVCK 156
+ V + + +K+ H HEPPV+ W + ++ ++ D+L + K
Sbjct: 60 RDGVVLNANTELIKNKDVFQSKQHNHEPPVLQWPLLHNVAHNTAGLKVVFEDNDLLVIDK 119
Query: 157 PPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
P +P+HP + KNT+ +L+ PLFP +RLD++ SGLLI A+ A + QI
Sbjct: 120 PCGIPIHPTAYFYKNTLTEVLEDARGY-PLFPCYRLDKITSGLLIFAKTQQTASRLQSQI 178
Query: 217 EAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFT 276
+ K Y+ARV+G F D N AS+ T E SL + A T+F
Sbjct: 179 RDQNMNKWYLARVDGNF-------DFN-KKTASSPIYTFEPKKSLKGAFAPVRDALTEFY 230
Query: 277 RISTNG--THSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
++ N S+VLC+P+TGRTHQIR+HL G+PI ND Y
Sbjct: 231 HVAYNEELNQSLVLCKPLTGRTHQIRIHLARLGHPIVNDPFY 272
>gi|440491875|gb|ELQ74480.1| RNA pseudouridylate synthase [Trachipleistophora hominis]
Length = 362
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 137/253 (54%), Gaps = 20/253 (7%)
Query: 65 YYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ 124
Y+++F + VK RW G++I+D+ + EF +P +YY A++ G I V+ E + Q
Sbjct: 4 YFYKFDTQVKGRWVGRSIIDVMSNEFTMKPVEYYDEAIRIGNITVNNEKSDKCRILSLGQ 63
Query: 125 KISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLA 184
I H +H HEP A ++ +L E D L V KP + HP Y +V +L+ +L+
Sbjct: 64 TIQHLVHYHEPD--ACEIELLCLEDDYLVVNKPSGIACHPTSGYNLFSVTRVLEKYGNLS 121
Query: 185 PLFPVHRLDRLVSGLLILA-RNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVN 243
++RLD L SG+LILA RNA K + ++ ++ K Y+A+V G F + E V +
Sbjct: 122 ---CINRLDVLTSGVLILAFRNAKK---YHNEMINHRIKKIYLAKVKGRFHD-EITVSAS 174
Query: 244 INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHL 303
+ N +E +GK A T F + + +S+V C P+TGR+HQIRVHL
Sbjct: 175 LKKNRFNFTEVSE----------EGKKAKTIFKCLFFHNGYSLVECRPVTGRSHQIRVHL 224
Query: 304 QYTGYPIANDMLY 316
+ +PI ND +Y
Sbjct: 225 KSLNFPIVNDPVY 237
>gi|403221369|dbj|BAM39502.1| RNA pseudouridylate synthase [Theileria orientalis strain Shintoku]
Length = 425
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 153/302 (50%), Gaps = 32/302 (10%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV--- 109
Y +G R V PY + ++VK RW GK + ++ +EF +Y A +I+V
Sbjct: 23 YRIVNGYRLVVPYLNVYKTYVKQRWMGKQLYNVLTDEFAAFNDEYIRYASSRNKIKVFDK 82
Query: 110 -DEEMVPVS------YTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
D ++ P S + +K ++KI H+ HEP + + +L ++ D + V KP S+PV
Sbjct: 83 DDRDIYPNSPAKVLVHKLKPNEKIVHYASVHEPISLHTHIRVLHEDEDYIVVSKPTSLPV 142
Query: 163 HPCGQYRKNTVVGILQAEHDLAP---LFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
+ G Y+ NT++ +L+ E D L+PVHR+D+LVSG++ A+++ A + Q +
Sbjct: 143 YRTGTYKYNTLIEVLKHEVDCCKNLDLYPVHRIDKLVSGIVAFAKSSRAATVLSQSLRDK 202
Query: 220 KVIKRYIARVNGVFPE---------------GEQVVDVNINYNASAGRSTAESGDSLGDT 264
V K YIARV G F E E++ + ++ S S D
Sbjct: 203 SVRKVYIARVRGNFWEFMRKAEECEDDENIDDEKLSKIVTHHGYIHPISIKLSKHEFTDK 262
Query: 265 PL--KGKAACTKFTRISTNG--THSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEH 320
L K K A T+F I+ N S++L PITGRTHQIR HL++ G+ I+ND Y H
Sbjct: 263 CLNSKYKPATTRFRFIAHNKDLDESLILVSPITGRTHQIRAHLKFLGHAISNDPSYNNGH 322
Query: 321 VT 322
T
Sbjct: 323 CT 324
>gi|67462777|ref|XP_648050.1| RNA pseudouridylate synthase [Entamoeba histolytica HM-1:IMSS]
gi|56463954|gb|EAL42664.1| RNA pseudouridylate synthase, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 373
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 145/289 (50%), Gaps = 33/289 (11%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F DG R V PYY EF +VK RW GK+I +++ EFK Y+S + Q+ EE
Sbjct: 10 YFFEDGFRRVIPYYKEFQVNVKGRWIGKSIGEIYRSEFK------YISKEEIQN-QIKEE 62
Query: 113 MV------------PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSV 160
+ ++ ++ + H HEPPV ++ I++ + L + KP +
Sbjct: 63 ITYLINKNGIKKETTINSVIEEHDILISKCHLHEPPVPIKEIQIIENTNEYLVINKPSGI 122
Query: 161 PVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG- 219
PVHP G+Y +N ++ IL E+ + L PV+RLD+ SG+L+ A+ A F+ ++
Sbjct: 123 PVHPTGRYNQNCIINILLNEYHFSHLKPVYRLDKNTSGILLFAKTKIFASSFQSILKEKS 182
Query: 220 -------KVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAAC 272
+ K Y+ARV G FP+ + +N R ES + + ++ +++
Sbjct: 183 SVISSTSSLQKIYLARVVGYFPDT-----IEVNLPLHLVRFGTESQSCICEDGIEARSSF 237
Query: 273 TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
+ + S++ C P TGRTHQ+R+HL+ +PIAND YL +
Sbjct: 238 KRLF-FDKDSNTSVIECVPHTGRTHQLRLHLKAIHHPIANDSAYLLNQI 285
>gi|366998465|ref|XP_003683969.1| hypothetical protein TPHA_0A04620 [Tetrapisispora phaffii CBS 4417]
gi|357522264|emb|CCE61535.1| hypothetical protein TPHA_0A04620 [Tetrapisispora phaffii CBS 4417]
Length = 396
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 145/298 (48%), Gaps = 39/298 (13%)
Query: 54 IFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV--DE 111
++ +G R +KPYY + K RW GKT++++ +EFK +Y+ + G + D
Sbjct: 6 VYTNGLRKLKPYYSTRNTFAKGRWLGKTLLEVLVKEFKTFTEQHYIDGITKGLYTIYRDG 65
Query: 112 EMVP----VSYTVKSSQKISHFLHRHEPPVMAW---------------DVSILQKEPDVL 152
E++ + +++ + H+HEPPV W + ++ ++ ++
Sbjct: 66 ELLAADDVLHSRIQNKDIVETRFHKHEPPVKQWCTELIENNDRQGRVAGIDLIYEDDNLF 125
Query: 153 TVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLF 212
+ KP +PVHP GQ+ KNT+ I + P +R+D++ SGLLI A+N A
Sbjct: 126 IIDKPNGIPVHPTGQFYKNTLTEIFKTHGKTVS--PCYRIDKVTSGLLIFAKNQVAASDI 183
Query: 213 RQQIEAGKVIKRYIARVNGVFP--------EGEQVVDVN----INYNASAGRSTAESGDS 260
+ +I + K Y ARV G FP + + D+ + N+S + G
Sbjct: 184 QTKISERTMNKYYFARVKGKFPGTLSNIFGDSYNISDIIQQDPVIENSSIYTVELKKGSL 243
Query: 261 LGDTPLKGKAACTKFTRIST--NGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+P + A T F I + HS+VLC+P+TGRTHQIR+HL G+PI ND Y
Sbjct: 244 AAFSP--TREAVTHFYPIKYYPDCDHSVVLCKPLTGRTHQIRIHLARLGFPIVNDPFY 299
>gi|241949279|ref|XP_002417362.1| DRAP deaminase, putative; hydrolase, putative [Candida dubliniensis
CD36]
gi|223640700|emb|CAX45011.1| DRAP deaminase, putative [Candida dubliniensis CD36]
Length = 405
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 146/288 (50%), Gaps = 36/288 (12%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV--- 109
YI + R V PYY +F + VK RW GKTI+D++ +F G + + ++ ++ +
Sbjct: 4 YIVENNIRKVIPYYTDFQTFVKKRWEGKTIIDIYESDF-GECEENILDDIESEKLYIVTN 62
Query: 110 -----DEEMVP-----VSYTVKSSQKISHFLHRHEPPVMAWD--VSILQKEPDVLTVCKP 157
D+ ++ + I H HRHEPP+ ++ + + ++ ++L V KP
Sbjct: 63 SNKPNDQSILTGVDKLTKRKLDEKDIICHTKHRHEPPIPWYNDIIKSIYEDNEILVVDKP 122
Query: 158 PSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIE 217
+P HP G Y N++ I++ ++++ ++ HRLD++ SG+L+LA+ + F + +
Sbjct: 123 SGIPTHPTGNYYHNSLSEIIKQQYNMDSIWTCHRLDKVTSGVLVLAKTKNGGVKFSKLMR 182
Query: 218 AGK--VIKRYIARVNGVFPEGEQ-----VVDVNINYNASAGRSTAESGDSLGDTPLKGKA 270
K K Y+ARV+G FPEG + VN+N +G DS
Sbjct: 183 DSKQHTKKTYLARVSGKFPEGIHQYRCPIFAVNMNGYLMSGNMEELPTDS---------- 232
Query: 271 ACTKFTRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F +I N S++ C PITG+ HQIR+HL+ G+PI ND Y
Sbjct: 233 -TTVFEQIKYNACLDQSLIKCIPITGKFHQIRIHLRNLGFPIVNDSFY 279
>gi|84998092|ref|XP_953767.1| (RNA) pseudouridylate synthase [Theileria annulata]
gi|65304764|emb|CAI73089.1| (RNA) pseudouridylate synthase, putative [Theileria annulata]
Length = 441
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 150/307 (48%), Gaps = 35/307 (11%)
Query: 50 KEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV 109
+E Y F DG R V PY + + VK RW GK + + +EF DY A+ I++
Sbjct: 35 EEPYRFVDGFRLVLPYSNVYKTFVKERWMGKPLRKVLKDEFSAFTPDYIDFAINKNNIKI 94
Query: 110 ----DEEMVPVS-----YTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSV 160
EE+ S + +K +++I H HEP + V ++ ++ + V KP S+
Sbjct: 95 ILQNGEELDNSSENVLDHILKPNERILHEAIVHEPVALNSKVPVVYEDDQYIVVSKPTSI 154
Query: 161 PVHPCGQYRKNTVVGILQAE----HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
PV+ G Y N+++ I++ E DL LF VHR+DRLVSGL+ A+++ A Q I
Sbjct: 155 PVYQTGTYNYNSLMEIMKREIPSCRDLK-LFTVHRIDRLVSGLVAFAKSSQDASNLSQAI 213
Query: 217 EAGKVIKRYIARVNGVFPEGEQVVDV-NINYNASAGRSTAESGDSLG------------- 262
+V K YIARV G F + N + A S +S+G
Sbjct: 214 RDNEVKKVYIARVKGDFSYLINTSNSDNKESDGDADNSLENVFESIGYMRVISKKEGKYE 273
Query: 263 -----DTPLKGKAACTKFTRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
D K + T+F I N S+VLC PITGRTHQIR HL+Y GYPI+ND
Sbjct: 274 FVGENDEDESYKRSVTRFKLIKYNKDLHESLVLCSPITGRTHQIRAHLKYLGYPISNDPW 333
Query: 316 YLCEHVT 322
Y + +T
Sbjct: 334 YNNDELT 340
>gi|50311419|ref|XP_455734.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644870|emb|CAG98442.1| KLLA0F14553p [Kluyveromyces lactis]
Length = 377
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 145/284 (51%), Gaps = 27/284 (9%)
Query: 55 FRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE-- 112
F++G R + PYY S VK RW GK++ +F +EF ++ + G I++ E
Sbjct: 12 FQNGLRKIAPYYNARSSFVKGRWFGKSLTQIFIDEF-AHTHEEAQLKITEGFIKLLREGK 70
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWD-----------VSILQKEPDVLTVCKPPSVP 161
+ +K+ + + H HEPPV W + I+ ++ +L + KP +P
Sbjct: 71 QLEGDPIIKNKDILLTYQHNHEPPVKNWGEPICDEKHIMGIPIVHQDEQLLVINKPNGIP 130
Query: 162 VHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
VHP + KNT+ +L+ P+ P +RLD++ SGLLILA+N A+ + +I +
Sbjct: 131 VHPTAYFYKNTLTELLKDSLGY-PVHPCYRLDKITSGLLILAKNPIDANRVQSKIRDRDM 189
Query: 222 IKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN 281
K Y+ARV G FPE VD + Y + +E L D A T+F + +
Sbjct: 190 KKYYLARVKGKFPET--AVDKSPIYTCDL-KIKSEPLSPLKD-------AHTEFELMEYD 239
Query: 282 GT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTH 323
SIVLC+P TGRTHQIR+HL G+PI ND Y ++ T+
Sbjct: 240 AVTDQSIVLCKPFTGRTHQIRIHLARQGHPITNDPFYNLDNSTY 283
>gi|344230777|gb|EGV62662.1| hypothetical protein CANTEDRAFT_115241 [Candida tenuis ATCC 10573]
Length = 415
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 141/291 (48%), Gaps = 35/291 (12%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y+ +G R V PYY + +H+K RW G+TI+D+F+ E G+P D + +I V E+
Sbjct: 7 YVIENGLRKVLPYYQSYKTHIKTRWEGRTILDVFSTEL-GQPPDVITQEISDSKIYVLED 65
Query: 113 M------VPVSYTVKSSQKISH------FLHRHEPPVMAWDVSILQKEPDVL-------- 152
+ + + S+KI H HEP V+ D+SI P+ L
Sbjct: 66 FGKKTSQIVKGWDLLQSRKIQKHDVIFSIRHMHEPSVVV-DMSISPNTPNTLINVIFHDH 124
Query: 153 ---TVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKA 209
V KP +PVHP Y N+V IL+ + L ++ HRLD++ SG+LIL N
Sbjct: 125 NYLVVNKPAGIPVHPTSNYLYNSVSEILKFDLKLENIWTSHRLDKVTSGVLILGLNKDTG 184
Query: 210 DLFRQQIE--AGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ IE + K Y ARV G FP+ + N + G G+
Sbjct: 185 SRLSKIIEHKSDHTTKTYFARVQGYFPDTYTYKCPIVLVNPNGGYLMP------GNLSKL 238
Query: 268 GKAACTKFTRI--STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
++ TKF R+ ST SIV C PI+G+ HQIRVHL+ G+PI ND +Y
Sbjct: 239 VTSSTTKFKRLQYSTFLDESIVECTPISGKMHQIRVHLRNIGFPITNDWVY 289
>gi|68488860|ref|XP_711730.1| hypothetical protein CaO19.2788 [Candida albicans SC5314]
gi|46433052|gb|EAK92508.1| hypothetical protein CaO19.2788 [Candida albicans SC5314]
Length = 402
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 144/299 (48%), Gaps = 58/299 (19%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
YI + R V PYY +F + VK RW G+TI+D++ +F +C + +D+
Sbjct: 4 YIVENNIRKVIPYYTDFQTFVKKRWEGRTIIDVYESDFG-----------ECQQNILDDI 52
Query: 113 MVPVSYTVKSSQK-----------------------ISHFLHRHEPPVMAWDVSILQ--- 146
Y V +S K I H HRHEPP+ W I++
Sbjct: 53 ESEKLYIVTNSNKPTEQSILTGVETLIKRKLDEKDIICHTKHRHEPPI-PWHNDIIKSVY 111
Query: 147 KEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNA 206
++ ++L V KP +P HP G Y N++ I++ + ++ ++ HRLD++ SG+L+LA+
Sbjct: 112 EDDEILVVDKPSGIPTHPTGNYYYNSLSEIIKQQLNMDSIWTCHRLDKVTSGVLVLAKTK 171
Query: 207 SKADLFRQQIEAGK--VIKRYIARVNGVFPEGEQ-----VVDVNINYNASAGRSTAESGD 259
+ F + + K K Y+ARV+G FPEG + VN+N +G D
Sbjct: 172 NGGVRFSKLMRDSKQHTEKTYLARVSGKFPEGIHRYRCPIFAVNMNGYLMSGNMEELPTD 231
Query: 260 SLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
S T F RI N + S+V C PITG+ HQIR+HL+ G+PI ND Y
Sbjct: 232 S-----------TTIFERIKYNASLDQSLVKCVPITGKFHQIRIHLRNLGFPIVNDSFY 279
>gi|428179575|gb|EKX48445.1| hypothetical protein GUITHDRAFT_151750, partial [Guillardia theta
CCMP2712]
Length = 212
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 103/160 (64%), Gaps = 8/160 (5%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPY-----DYYVSAVKCGRIQVDEEMV 114
R V PY FEF + +K RW G+ ++++F++EF PY YY A++ GR++V++E
Sbjct: 56 RVVPPYRFEFGTSIKARWVGRLLLEVFSQEF---PYFEDSLQYYTEAMELGRLRVNDEKA 112
Query: 115 PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV 174
Y + I+H +HRHEPPV + + I+ +L V KP S+P+HP G+YR+N+++
Sbjct: 113 SKDYRCRDGDVITHHVHRHEPPVTSEKIVIISDSDGILAVNKPSSIPIHPGGRYRRNSLL 172
Query: 175 GILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQ 214
IL EH++ L VHRLDRL SGLL+ R+ + A++FR+
Sbjct: 173 AILAKEHNMFDLHTVHRLDRLTSGLLLFGRSKAVAEMFRR 212
>gi|440794580|gb|ELR15740.1| RNA pseudouridine synthase superfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 293
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 129/257 (50%), Gaps = 4/257 (1%)
Query: 55 FRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV 114
R+G R V+PY ++HVK W+G+ ++D+ + + P +Y+ AV+ GRI ++
Sbjct: 23 IRNGLRWVRPYETTMLAHVKAAWSGRPLLDVLSSNYDRFPPEYWREAVQDGRITLNGAKA 82
Query: 115 PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV 174
V +S I H LH HE P+ A + IL ++ V KP VP+HP YR NT+
Sbjct: 83 DQDTVVPASGHICHRLHMHESPIAADPIDILHASDHLVVVNKPAGVPMHPVAMYRHNTLE 142
Query: 175 GILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFP 234
IL EH + P+F V RLD SGL+++ R A R Q+ A +V K+Y ARV G FP
Sbjct: 143 WILAREHQIRPVFMVSRLDMPTSGLVVIPRTPEMARTLRDQLTAHRVTKKYYARVVGRFP 202
Query: 235 EGEQVVDVNINYNASAGRSTAESGDSLGD---TPLKGKAACTKFTRISTNGTHSIVLCEP 291
Q V + Y + + + +GK+A T+F +S + T L
Sbjct: 203 TEAQECSVPLQYEGKRRTTQTSCTPKMSNNVQASGEGKSAQTRFVGLSYDSTTDTSLGGV 262
Query: 292 ITGRTHQIRVH-LQYTG 307
+ ++ +H + YTG
Sbjct: 263 RARKVPRVWLHAIAYTG 279
>gi|50545681|ref|XP_500379.1| YALI0B01276p [Yarrowia lipolytica]
gi|49646245|emb|CAG82596.1| YALI0B01276p [Yarrowia lipolytica CLIB122]
Length = 337
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 140/288 (48%), Gaps = 42/288 (14%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKG-RPYDYYVSAVKCGRIQV-- 109
Y F G R+V PYY+ K RW GKT++D+ + EF P D+ + G I++
Sbjct: 3 YSFSKGFRHVIPYYYTHSIPSKGRWFGKTVLDVLSTEFSSVYPSDHLRQTIDAGNIKLIR 62
Query: 110 -DEEMVPVS----------YTVKSSQKISHFLHRHEPPVMAWD---VSILQKEPDVLTVC 155
D+ P + + K+ + +HRHEP V D + I+ + ++ V
Sbjct: 63 RDKLSEPATEYTDWESLSTHVFKNGSILESRVHRHEPAVPTRDEKPIRIVFENDALVVVD 122
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQ 215
KP +PVHP G+Y N+V IL+ E L L+P HRLD+ +G+L+ A+ + + QQ
Sbjct: 123 KPGGIPVHPTGKYLFNSVKEILKHETGLEELYPAHRLDKNTTGVLVFAKTSESVNHVTQQ 182
Query: 216 IEAGKVIKRYIARVNGVFPEGE-----QVVDVNINYNASAGRSTAESGDSLGDTPLKGKA 270
I + K Y+ARV G FP G VV+ I N ++ K
Sbjct: 183 IMSRSAKKEYLARVKGRFPPGRVETHHPVVENTIKRN------------------VQPKD 224
Query: 271 ACTKFTRISTNGTH--SIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F R++ + SIV C P TGR HQIR HL + GYPI ND Y
Sbjct: 225 AHTAFERVAYDEHRDLSIVRCLPSTGRNHQIRQHLLHLGYPIENDREY 272
>gi|312374039|gb|EFR21691.1| hypothetical protein AND_16535 [Anopheles darlingi]
Length = 912
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 97/159 (61%), Gaps = 16/159 (10%)
Query: 162 VHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
VHPCG+YR NTVV IL E++L L +HRLDRL SGLL+ R+ KA QI +V
Sbjct: 15 VHPCGRYRHNTVVFILAKEYNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEHQIRNRQV 74
Query: 222 IKRYIARVNGVFPEG----EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTR 277
K YI RV G FP+G ++ ++V ++Y + + KGK T F +
Sbjct: 75 QKEYICRVEGEFPDGVIECKEPIEV-VSYKIGVCKVSP-----------KGKECTTTFQK 122
Query: 278 ISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ NG+ S+VLC+P+TGR HQIRVHLQY GYP+ ND LY
Sbjct: 123 LGFNGSSSVVLCKPLTGRMHQIRVHLQYLGYPVVNDPLY 161
>gi|68488811|ref|XP_711752.1| hypothetical protein CaO19.10304 [Candida albicans SC5314]
gi|46433075|gb|EAK92530.1| hypothetical protein CaO19.10304 [Candida albicans SC5314]
Length = 402
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 143/299 (47%), Gaps = 58/299 (19%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
YI + R V PYY +F + VK RW +TI+D++ +F +C + +D+
Sbjct: 4 YIVENNIRKVIPYYTDFQTFVKKRWEARTIIDVYESDFG-----------ECQQNILDDI 52
Query: 113 MVPVSYTVKSSQK-----------------------ISHFLHRHEPPVMAWDVSILQ--- 146
Y V +S K I H HRHEPP+ W I++
Sbjct: 53 ESEKLYIVTNSNKPTEQSILTGVETLIKRKLDEKDIICHTKHRHEPPI-PWHNDIIKSVY 111
Query: 147 KEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNA 206
++ ++L V KP +P HP G Y N++ I++ + ++ ++ HRLD++ SG+L+LA+
Sbjct: 112 EDDEILVVDKPSGIPTHPTGNYYFNSLSEIIKQQLNMDSIWTCHRLDKVTSGVLVLAKTK 171
Query: 207 SKADLFRQQIEAGK--VIKRYIARVNGVFPEGEQ-----VVDVNINYNASAGRSTAESGD 259
+ F + + K K Y+ARV+G FPEG + VN+N +G D
Sbjct: 172 NGGVRFSKLMRDSKQYTEKTYLARVSGKFPEGIHRYRCPIFAVNMNGYLMSGNMEELPTD 231
Query: 260 SLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
S T F RI N + S+V C PITG+ HQIRVHL+ G+PI ND Y
Sbjct: 232 S-----------TTIFERIKYNASLDQSLVKCVPITGKFHQIRVHLRNLGFPIVNDSFY 279
>gi|255729940|ref|XP_002549895.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240132964|gb|EER32521.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 392
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 35/287 (12%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
+I + R V PYY +HVK RW GKT++++F +F D + +K ++ V
Sbjct: 4 FIIENNLRKVIPYYINLETHVKGRWEGKTLIEVFKSDFGISEQDV-LEDIKNEKLYVISN 62
Query: 113 M-------------VPVSYTVKSSQKISHFLHRHEPPV-MAWDVSILQKEPDVLTVCKPP 158
+ + +S + + + H HRHEPP+ + + ++ ++L V KP
Sbjct: 63 INKPNEKACLKGFDLLISRPLHAKDLVCHSKHRHEPPIPYLGRIKSVYEDDELLVVDKPS 122
Query: 159 SVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEA 218
VP HP G Y N+V +++ + L ++ HRLD++ SG+LI + S F + I+
Sbjct: 123 GVPTHPTGNYYFNSVSEMVKDQFGLEAIWTCHRLDKVTSGVLIFGKTKSAGSKFSRLIKD 182
Query: 219 GK--VIKRYIARVNGVFPEGEQ-----VVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
K K Y+ARV G FP G+ + VN+N G S DS
Sbjct: 183 HKDQTEKTYLARVVGEFPNGKLQYNCPIFAVNLNGYLVPGNSEELPLDS----------- 231
Query: 272 CTKFTRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F ++S N + S+V C PITG+ HQIR+HL+ G+PI ND Y
Sbjct: 232 TTIFQKVSYNASLNQSLVKCIPITGKFHQIRIHLRNLGFPIVNDSFY 278
>gi|397646140|gb|EJK77140.1| hypothetical protein THAOC_01047 [Thalassiosira oceanica]
Length = 619
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 106/189 (56%), Gaps = 12/189 (6%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R ++PY F F + K RW G+T+VD++++EF P YY+SA+K GRI V V Y
Sbjct: 60 RIIQPYPFRFATFAKARWVGRTLVDVYSQEFGSYPQSYYISAIKAGRILVSGRRVQCDYI 119
Query: 120 VKSSQKISHFLHRHEPPVMAWD-------VSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
VK ++ H +HRHEP V + + IL + +L V KP ++P+HPCG Y N+
Sbjct: 120 VKGGDELMHTVHRHEPAVGLAEGIEGDPPIDILHESESLLVVDKPSTLPIHPCGGYNFNS 179
Query: 173 VVGIL----QAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI-EAGKVIKRYIA 227
+ +L Q LF VHRLDRL SGL+++A+++ A I + K Y+A
Sbjct: 180 LFEVLSSWRQDRFGQGKLFNVHRLDRLTSGLVVVAKSSQYARTLSNCIMKRDGCEKIYLA 239
Query: 228 RVNGVFPEG 236
RV G FP G
Sbjct: 240 RVKGKFPLG 248
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 248 ASAGRSTAESGD--SLGDTPLKG-KAACTKFTRISTN--GTHSIVLCEPITGRTHQIRVH 302
AS E+GD SL + KG K A T F +S + S+++ +PITGRTHQIR+H
Sbjct: 392 ASHKNGVCEAGDFSSLKEAERKGIKPAQTSFAVLSYDLASDTSLIVAKPITGRTHQIRLH 451
Query: 303 LQYTGYPIANDMLY 316
LQ G+PIAND Y
Sbjct: 452 LQQLGHPIANDHCY 465
>gi|395328337|gb|EJF60730.1| pseudouridine synthase [Dichomitus squalens LYAD-421 SS1]
Length = 499
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 125/220 (56%), Gaps = 12/220 (5%)
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSIL--QKEPDVLTVCKPP 158
A++ G ++ ++ +K+ +I + HRHEPPV + V I+ KE + + KP
Sbjct: 6 ALESGVTTINGKVAKPDTIIKNGDRIENVSHRHEPPVTSTPVRIVLHDKERQFIVIDKPG 65
Query: 159 SVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEA 218
S+PVH G+Y +N++V IL+ + ++ V+RLDRL SGL+IL N++ A+ ++
Sbjct: 66 SIPVHAAGRYFRNSLVEILKNDFGFEKVYTVNRLDRLTSGLMILPLNSALANTLSKEFVN 125
Query: 219 GKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI 278
G+V K Y+AR G F E E V + + T + L +GK A T F R+
Sbjct: 126 GEVRKEYVARCKGKFLEEEIVCEEPL--------LTVDRQMGLNIVHPEGKPAKTIFNRL 177
Query: 279 --STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
N S++ C P+TGR+HQIRVHLQY G+PIAND +Y
Sbjct: 178 HYDENTDTSVLRCRPLTGRSHQIRVHLQYLGHPIANDPIY 217
>gi|238878813|gb|EEQ42451.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 402
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 143/299 (47%), Gaps = 58/299 (19%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
YI + R V PYY +F + VK RW G+TI+D++ +F +C + +D+
Sbjct: 4 YIVENNIRKVIPYYTDFQTFVKKRWEGRTIIDVYESDFG-----------ECQQNILDDI 52
Query: 113 MVPVSYTVKSSQK-----------------------ISHFLHRHEPPVMAWDVSILQ--- 146
Y V +S K I H HRHEPP+ W I++
Sbjct: 53 ESEKLYIVTNSNKPTEQSILTGVETLIKRKLDEKDIICHTKHRHEPPI-PWHNDIIKSVY 111
Query: 147 KEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNA 206
++ ++L V KP +P HP G Y N++ I++ + ++ ++ HRLD++ SG+L+LA+
Sbjct: 112 EDDEILVVDKPSGIPTHPTGNYYYNSLSEIIKQQLNIDSIWTCHRLDKVTSGVLVLAKTK 171
Query: 207 SKADLFRQQIEAGK--VIKRYIARVNGVFPEGEQ-----VVDVNINYNASAGRSTAESGD 259
+ F + + K K Y+ARV+G FPEG + VN+N +G D
Sbjct: 172 NGGVRFSKLMRDSKQYTEKTYLARVSGKFPEGIHRYRCPIFAVNMNGYLMSGNMEELPTD 231
Query: 260 SLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
S T F RI N + S++ C ITG+ HQIR+HL+ G+PI ND Y
Sbjct: 232 S-----------TTIFERIKYNASLDESLIKCVSITGKFHQIRIHLRNLGFPIVNDSFY 279
>gi|313229293|emb|CBY23879.1| unnamed protein product [Oikopleura dioica]
Length = 390
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 144/292 (49%), Gaps = 22/292 (7%)
Query: 42 QTPANPPVKED------YIF--RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFK-- 91
Q+P +P ED YI + G R V+PYYF RW G ++ D+ +EF
Sbjct: 46 QSPLSPEKLEDTFAETDYIIDEKSGLRRVRPYYFTHHKFALKRWLGMSVFDMMMKEFSLH 105
Query: 92 -GRPYDYYVSAVKCGRIQVDEEMVPVS----YTVKSSQKISHFLHRHEPPVMAWDVSILQ 146
P +A + G + + E++ S +K IS HRHEPPV ++
Sbjct: 106 ISTPEKLEQTAER-GYMLFNMEIINASELKNRIIKDGDMISTKDHRHEPPVRIPLPEVIA 164
Query: 147 KEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNA 206
+ V KP S+P+HP QYR N+++ ++ E+ + +HRLDRL SGL+I A+
Sbjct: 165 DTDEFYVVNKPSSLPIHPVAQYRHNSLIFLIAREYKVN-YHVIHRLDRLTSGLVIFAKTK 223
Query: 207 SKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL 266
A ++I V K+Y+ RV G FP+ + V D ++ + SA + + D
Sbjct: 224 EVAKRVSKEISDRVVRKQYLLRVVGKFPD-KAVCDKSL-FEISAKKGIYRVAKA-DDDEK 280
Query: 267 KGKAACTKFTRIS--TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K K A T+F + S+V P TGRTHQIRVH QY G PI ND +Y
Sbjct: 281 KVKTALTEFELVEYFKEADQSLVRAIPKTGRTHQIRVHTQYLGCPIVNDPVY 332
>gi|183233062|ref|XP_001913799.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|169801746|gb|EDS89422.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
Length = 356
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 141/277 (50%), Gaps = 26/277 (9%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F DG R V PYY EF +VK RW GK+I +++ R Y ++ K G + +E
Sbjct: 10 YFFEDGFRRVIPYYKEFQVNVKGRWIGKSIGEIY------RKITYLIN--KNG---IKKE 58
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
S + IS H HEPPV ++ I++ + L + KP +PVHP G+Y +N
Sbjct: 59 TTINSVIEEHDILISK-CHLHEPPVPIKEIQIIENTNEYLVINKPSGIPVHPTGRYNQNC 117
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG--------KVIKR 224
++ IL E+ + L PV+RLD+ SG+L+ A+ A F+ ++ + K
Sbjct: 118 IINILLNEYHFSHLKPVYRLDKNTSGILLFAKTKIFASSFQSILKEKSSVISSTSSLQKI 177
Query: 225 YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH 284
Y+ARV G FP+ + +N R ES + + ++ +++ + +
Sbjct: 178 YLARVVGYFPDS-----IEVNLPLHLVRFGTESQSCICEDGIEARSSFKRLF-FDKDSNT 231
Query: 285 SIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
S++ C P TGRTHQ+R+HL+ +PIAND YL +
Sbjct: 232 SVIECVPHTGRTHQLRLHLKAIHHPIANDSAYLLNQI 268
>gi|449704364|gb|EMD44621.1| RNA pseudouridylate synthase, putative [Entamoeba histolytica KU27]
Length = 356
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 141/277 (50%), Gaps = 26/277 (9%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F DG R V PYY EF +VK RW GK+I +++ R Y ++ K G + +E
Sbjct: 10 YFFEDGFRRVIPYYKEFQVNVKGRWIGKSIGEIY------RKITYLIN--KNG---IKKE 58
Query: 113 MVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
S + IS H HEPPV ++ I++ + L + KP +P+HP G+Y +N
Sbjct: 59 TTINSVIEEHDILISK-CHLHEPPVPIKEIQIIENTNEYLVINKPSGIPIHPTGRYNQNC 117
Query: 173 VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIE--------AGKVIKR 224
++ IL E+ + L PV+RLD+ SG+L+ A+ A F+ ++ + K
Sbjct: 118 IINILLNEYHFSHLKPVYRLDKNTSGILLFAKTKIFASSFQSILKEKSSVISSTSSLQKI 177
Query: 225 YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH 284
Y+ARV G FP+ + +N R ES + + ++ +++ + +
Sbjct: 178 YLARVVGYFPDT-----IEVNLPLHLVRFGTESQSCICEDGIEARSSFKRLF-FDKDSNT 231
Query: 285 SIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
S++ C P TGRTHQ+R+HL+ +PIAND YL +
Sbjct: 232 SVIECVPHTGRTHQLRLHLKAIHHPIANDSAYLLNQI 268
>gi|313246104|emb|CBY35058.1| unnamed protein product [Oikopleura dioica]
Length = 446
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/356 (31%), Positives = 160/356 (44%), Gaps = 41/356 (11%)
Query: 42 QTPANPPVKED------YIF--RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFK-- 91
Q+P +P ED YI + G R V+PYYF RW G ++ D+ +EF
Sbjct: 52 QSPLSPEKLEDTFAETDYIIDEKRGLRRVRPYYFTHHKFALKRWLGMSVFDMMIKEFSLH 111
Query: 92 -GRPYDYYVSAVKCGRIQVDEEMVPVS----YTVKSSQKISHFLHRHEPPVMAWDVSILQ 146
P +A + G + + E++ S +K IS HRHEPPV ++
Sbjct: 112 ISTPEKLEQTAER-GYMLFNMEIIHASELKNRIIKDGDMISTKDHRHEPPVRIPLPEVIA 170
Query: 147 KEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNA 206
+ V KP S+P+HP QYR N+++ ++ E+ + +HRLDRL SGL+I A+
Sbjct: 171 DTDEFYVVNKPSSLPIHPVAQYRHNSLIFLISREYKVN-YHVIHRLDRLTSGLVIFAKTK 229
Query: 207 SKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL 266
A ++I V K+Y+ RV G FP+ + V D + G D D
Sbjct: 230 EVAKRVSKEISDRVVQKQYLLRVVGKFPD-KAVCDKS---GTKKGIYRVAKAD---DDEK 282
Query: 267 KGKAACTKFTRIS--TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIA-----NDMLYLCE 319
K K A T+F + S+V P TGRTHQIRVH QY G PI ND L+ E
Sbjct: 283 KVKTALTEFELVEYFKEADQSLVRAIPKTGRTHQIRVHTQYLGCPIVNDPVYNDPLFGKE 342
Query: 320 HVTHR-------EGMSADRAAAYSHHSPP--PVSSDKSESSSEDFSIDPMCTNCPN 366
R E M+ + + P +S D + DF DP+C C N
Sbjct: 343 RFVERQQREDITEEMAVNGLTKTKNWGPKGYKISEDDNRLDM-DFEKDPLCDKCLN 397
>gi|66358534|ref|XP_626445.1| Yd1036cp-like RluD, S4+type 1 pseudouridine synthase
[Cryptosporidium parvum Iowa II]
gi|46227837|gb|EAK88757.1| Yd1036cp-like RluD, S4+type 1 pseudouridine synthase
[Cryptosporidium parvum Iowa II]
Length = 481
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 153/312 (49%), Gaps = 53/312 (16%)
Query: 51 EDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVD 110
EDY+ V PY FE+ S K RW +T+ DLF EF+ RP + Y+ + R+ V+
Sbjct: 38 EDYVVV-----VPPYMFEYESFCKLRWRDRTLRDLFLNEFRTRPIEEYLRLIDQRRLSVN 92
Query: 111 EEMV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYR 169
+ V + Y V++ KI H E PV V IL +L V KP +P HP G++
Sbjct: 93 DTPVNSLDYIVRNGDKIKHRSLFIELPVAIDKVKILYDSSTLLAVFKPCGIPCHPQGRFN 152
Query: 170 KNTVVGILQAEH------DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIK 223
K ++ ++Q+E+ + + P++RLDR+ SGL++L++++S +++ K
Sbjct: 153 KLSLTKLIQSEYLSKLNTNSTYIHPINRLDRVTSGLVLLSKDSSTTKNLSSKVQFAH--K 210
Query: 224 RYIARVNGVFP-----------EGEQVVDVNIN---------YNASAGRSTAE--SGDSL 261
Y+A +N EG + +++++ G T + G+SL
Sbjct: 211 YYLAMINESTSNFISHISQSSIEGVSIRELSLDESHGITSHVIKCEIGLKTLKDREGESL 270
Query: 262 ---GDTPLKGKAACTKF--------------TRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
D+ K + T F +I+ +SI+LC+PITGRTHQIR HL+
Sbjct: 271 ITRIDSSENSKYSLTYFFPLISCLDINEAKKQKINETDKYSILLCKPITGRTHQIRAHLK 330
Query: 305 YTGYPIANDMLY 316
Y G+PI D+LY
Sbjct: 331 YIGFPIVRDILY 342
>gi|67595791|ref|XP_666024.1| N-terminal part related to RNA:pseudouridine (psi)-synthases
C-terminal portion contains the deaminase domain
implicated in Riboflavin synthesis; Rib2p
[Cryptosporidium hominis TU502]
gi|54656925|gb|EAL35796.1| N-terminal part related to RNA:pseudouridine (psi)-synthases
C-terminal portion contains the deaminase domain
implicated in Riboflavin synthesis; Rib2p
[Cryptosporidium hominis]
Length = 481
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 151/312 (48%), Gaps = 53/312 (16%)
Query: 51 EDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV- 109
EDY+ V PY FE+ S K RW +T+ DLF EF+ RP + Y+ + R+ V
Sbjct: 38 EDYVVV-----VPPYMFEYESFCKLRWRDRTLRDLFLNEFRTRPIEEYLRLIDQRRLSVN 92
Query: 110 DEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYR 169
D + Y V++ KI H E PV V IL +L V KP +P HP G++
Sbjct: 93 DTPANSLDYIVRNGDKIKHRSLFIELPVATDKVKILYDSSTLLAVFKPCGIPCHPQGRFN 152
Query: 170 KNTVVGILQAEH------DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIK 223
K ++ ++Q+E+ + + P++RLDR+ SGL++L++++S +++ K
Sbjct: 153 KLSLTKLIQSEYLSKLNTNSTYIHPINRLDRVTSGLVLLSKDSSTTKNLSSKVQFAH--K 210
Query: 224 RYIARVNGVFP-----------EGEQVVDVNIN---------YNASAGRSTAE--SGDSL 261
Y+A +N EG + +++++ G T + G+SL
Sbjct: 211 YYLAMINESASNFISHVSQSSIEGVSIRELSLDESHGITSHVIKCEIGLKTLKDREGESL 270
Query: 262 ---GDTPLKGKAACTKF--------------TRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
D+ K + T F +I+ +SI+LC+PITGRTHQIR HL+
Sbjct: 271 ITRIDSSENSKYSLTYFFPLISCLDINEGKKQKINETDKYSILLCKPITGRTHQIRAHLK 330
Query: 305 YTGYPIANDMLY 316
Y G+PI D+LY
Sbjct: 331 YIGFPIVRDILY 342
>gi|449504052|ref|XP_002196850.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
[Taeniopygia guttata]
Length = 263
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 113/170 (66%), Gaps = 1/170 (0%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G++++ +F EF+ +P YY +A + GR++++EE
Sbjct: 92 YYFEGGLRKVRPYYFDFRTYCKGRWVGRSLLHVFGTEFRAQPLAYYRAAARAGRLRLNEE 151
Query: 113 MV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V + +K++ + + +HRHEPPV A + IL ++ +V+ V KP S+PVHPCG++R N
Sbjct: 152 PVRDLDIVLKNNDFLRNTVHRHEPPVTAQPIRILAEDEEVVVVDKPSSLPVHPCGRFRHN 211
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221
TV+ IL EH L L +HRLDR+ SG+L+ A+ A+ + +Q+ +V
Sbjct: 212 TVIFILGKEHGLRELHTLHRLDRMTSGVLMFAKTAAVSKRIDEQVRQRQV 261
>gi|167386039|ref|XP_001737591.1| ribosomal pseudouridine synthase [Entamoeba dispar SAW760]
gi|165899521|gb|EDR26097.1| ribosomal pseudouridine synthase, putative [Entamoeba dispar
SAW760]
Length = 389
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 138/263 (52%), Gaps = 16/263 (6%)
Query: 57 DGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVK-CGRIQVDEEMVP 115
DG R V PY + F VK RW GK + ++ EEF D + K ++Q + + +
Sbjct: 54 DGMRWVVPYVYWFEVIVKERWIGKEVKEIMKEEFHYLDDDITKAFEKRLLKVQRNNKEIN 113
Query: 116 VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+ + + + +HRHE PV + I+ ++ DV+ V KP +P H G+Y +NTV+
Sbjct: 114 ENCIFEQGDILLNQIHRHELPVPCL-LPIIHEDNDVIVVNKPSGIPTHSGGRYTENTVIN 172
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL+ E ++ LF VHRLDRL SG+LI+A+++ A+ ++ + K+YI RV G
Sbjct: 173 ILEKERNIK-LFGVHRLDRLTSGVLIIAKSSEIANEIQRHFISAH--KKYICRVIGYM-- 227
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH--SIVLCEPIT 293
G +V+ I + G +GK + T F +I + +++ P T
Sbjct: 228 GSCIVNKPIIETTCITKQRVTVGS-------EGKISTTIFEQIQYDQKTDTTLLWAIPKT 280
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GR HQIRVHL Y +PIAND +Y
Sbjct: 281 GRMHQIRVHLSYENHPIANDSMY 303
>gi|209880932|ref|XP_002141905.1| RNA pseudouridylate synthase family protein [Cryptosporidium muris
RN66]
gi|209557511|gb|EEA07556.1| RNA pseudouridylate synthase family protein [Cryptosporidium muris
RN66]
Length = 527
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 143/324 (44%), Gaps = 71/324 (21%)
Query: 62 VKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV-PVSYTV 120
V PY ++ K RW GKT+ D+F++EF+ RP + Y AV CG+I V+ + + + + +
Sbjct: 57 VPPYIIDYSVSCKMRWRGKTLYDIFSKEFRTRPINEYQKAVNCGKISVNGKPINSLDHHI 116
Query: 121 KSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE 180
+ I H E P +V IL L V KP +P HP G++ K ++ I+ ++
Sbjct: 117 FNGDIIRHESLMIELPAPLDNVVILYNNKHFLAVYKPYGIPCHPQGRFHKLSLTNIVMSK 176
Query: 181 H--------------------DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
+ D P++RLDR+ SGL+IL++N L + I
Sbjct: 177 YFRSETEVIIDNKAASRIINDDKLYAHPINRLDRVTSGLVILSKNCDSTRLLSKVISKSH 236
Query: 221 VIKRYIARVNGVFPEGEQV------------------VDVNINYNASAGRSTAESGDSLG 262
K Y+A V G F E V + +NIN+ D +G
Sbjct: 237 --KYYLAHVEGDFSSLEHVDIGKLFKSTQLVKIQNLEMGLNINFGIKCEAPLEIIKDRVG 294
Query: 263 DTPL------KGKAACTKFTRI---------------------STNGTH---SIVLCEPI 292
D+ + GK+A T F + S N H S VLC+P+
Sbjct: 295 DSLMTKVSFENGKSALTWFFPLKIEYLSQEDRKKIKLDQVNFESINICHKPNSYVLCKPV 354
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGRTHQIR HLQY G+P+ D LY
Sbjct: 355 TGRTHQIRAHLQYLGFPVTLDHLY 378
>gi|207346913|gb|EDZ73262.1| YDL036Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|365766489|gb|EHN07985.1| Pus9p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392300082|gb|EIW11173.1| Pus9p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 265
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 98/166 (59%), Gaps = 7/166 (4%)
Query: 152 LTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADL 211
+ + KP +PVHP G+YR NT+ +LQ + P +RLDRL SGL+ LA+ AD
Sbjct: 1 MVIDKPSGIPVHPTGRYRFNTITKMLQNNLGFV-VNPCNRLDRLTSGLMFLAKTPKGADN 59
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY-NASAGRSTAESGDSLGDTPLKGKA 270
Q++A +V K Y+A+V G FPE E +V+ + + D G K
Sbjct: 60 IGDQLKAREVTKEYVAKVVGEFPETEVIVEKPLKLIEPRLALNAVCQMDEKG-----AKH 114
Query: 271 ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F RIS +G SIV C+P+TGR+HQIRVHLQY G+PIAND +Y
Sbjct: 115 AKTVFNRISYDGKTSIVKCKPLTGRSHQIRVHLQYLGHPIANDPIY 160
>gi|449701801|gb|EMD42551.1| ribosomal pseudouridine synthase, putative [Entamoeba histolytica
KU27]
Length = 389
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 140/265 (52%), Gaps = 20/265 (7%)
Query: 57 DGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPV 116
DG R V PY + F VK RW GK I ++ EEF D A + G +++ +
Sbjct: 54 DGMRWVVPYLYWFEVMVKERWIGKEIKEIMKEEFHYSDDDI-TRAFEKGLLKIKRNNNEI 112
Query: 117 SYTVKSSQK--ISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV 174
+ Q + + +HRHE PV + + I+ ++ DV+ V KP +P H G+Y +NTV+
Sbjct: 113 NENCIVIQGDILLNQIHRHELPV-PYLLPIIYEDNDVIVVNKPSGIPTHSGGRYTENTVI 171
Query: 175 GILQAEHDLAPLFPVHRLDRLVSGLLILARNASKA-DLFRQQIEAGKVIKRYIARVNGVF 233
IL+ E ++ LF VHRLDRL SG+L++A+++ A ++ R I A K +YI RV G
Sbjct: 172 RILEKERNIK-LFGVHRLDRLTSGVLLIAKSSEIANEIQRHFINAHK---KYICRVIGYM 227
Query: 234 PEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH--SIVLCEP 291
+V+ I + + G +GKA+ T F +I + +++ P
Sbjct: 228 DSC--IVNKPIIETSCITKQLVTVG-------CEGKASTTIFEQIQYDEKTDTTLLWAIP 278
Query: 292 ITGRTHQIRVHLQYTGYPIANDMLY 316
TGR HQIRVHL Y +PIAND +Y
Sbjct: 279 KTGRMHQIRVHLSYENHPIANDSMY 303
>gi|323334235|gb|EGA75617.1| Pus9p [Saccharomyces cerevisiae AWRI796]
Length = 276
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 100/171 (58%), Gaps = 7/171 (4%)
Query: 152 LTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADL 211
+ + KP +PVHP G+YR NT+ +LQ + P +RLDRL SGL+ LA+ AD
Sbjct: 1 MVIDKPSGIPVHPTGRYRFNTITKMLQNNLGFV-VNPCNRLDRLTSGLMFLAKTPRGADN 59
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY-NASAGRSTAESGDSLGDTPLKGKA 270
Q++A +V K Y+A+V G FPE E +V+ + + D G K
Sbjct: 60 IGDQLKAREVTKEYVAKVVGEFPETEVIVEKPLKLIEPRLALNAVCQMDEKG-----AKH 114
Query: 271 ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHV 321
A T F RIS +G SIV C+P+TGR+HQIRVHLQY G+PIAND +Y + V
Sbjct: 115 AKTVFNRISYDGKTSIVKCKPLTGRSHQIRVHLQYLGHPIANDPIYSNDEV 165
>gi|67478945|ref|XP_654854.1| RNA pseudouridylate synthase [Entamoeba histolytica HM-1:IMSS]
gi|56471941|gb|EAL49468.1| RNA pseudouridylate synthase, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 389
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 140/265 (52%), Gaps = 20/265 (7%)
Query: 57 DGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPV 116
DG R V PY + F VK RW GK I ++ EEF D A + G +++ +
Sbjct: 54 DGMRWVVPYLYWFEVMVKERWIGKEIKEIMKEEFHYSDDDI-TRAFEKGLLKIKRNNNEI 112
Query: 117 SYTVKSSQK--ISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV 174
+ Q + + +HRHE PV + + I+ ++ DV+ V KP +P H G+Y +NTV+
Sbjct: 113 NENCIVIQGDILLNQIHRHELPV-PYLLPIIYEDNDVIVVNKPSGIPTHSGGRYTENTVI 171
Query: 175 GILQAEHDLAPLFPVHRLDRLVSGLLILARNASKA-DLFRQQIEAGKVIKRYIARVNGVF 233
IL+ E ++ LF VHRLDRL SG+L++A+++ A ++ R I A K+YI RV G
Sbjct: 172 RILEKERNIK-LFGVHRLDRLTSGVLLIAKSSEIANEIQRHFINA---YKKYICRVIGYM 227
Query: 234 PEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH--SIVLCEP 291
+V+ I + + G +GKA+ T F +I + +++ P
Sbjct: 228 DSC--IVNKPIIETSCITKQRVTVG-------CEGKASTTIFEQIQYDEKTDTTLLWAIP 278
Query: 292 ITGRTHQIRVHLQYTGYPIANDMLY 316
TGR HQIRVHL Y +PIAND +Y
Sbjct: 279 KTGRMHQIRVHLSYENHPIANDSMY 303
>gi|323309473|gb|EGA62684.1| Pus9p [Saccharomyces cerevisiae FostersO]
Length = 265
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 98/166 (59%), Gaps = 7/166 (4%)
Query: 152 LTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADL 211
+ + KP +PVHP G+YR NT+ +LQ + P +RLDRL SGL+ LA+ AD
Sbjct: 1 MVIDKPSGIPVHPTGRYRFNTITKMLQNNLGFV-VNPCNRLDRLTSGLMFLAKTPRGADN 59
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY-NASAGRSTAESGDSLGDTPLKGKA 270
Q++A +V K Y+A+V G FPE E +V+ + + D G K
Sbjct: 60 IGDQLKAREVTKEYVAKVVGEFPETEVIVEKPLKLIEPRLALNAVCQMDEKG-----AKH 114
Query: 271 ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F RIS +G SIV C+P+TGR+HQIRVHLQY G+PIAND +Y
Sbjct: 115 AKTVFNRISYDGKTSIVKCKPLTGRSHQIRVHLQYLGHPIANDPIY 160
>gi|269861115|ref|XP_002650272.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Enterocytozoon bieneusi H348]
gi|220066286|gb|EED43774.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Enterocytozoon bieneusi H348]
Length = 331
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 127/261 (48%), Gaps = 18/261 (6%)
Query: 65 YYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ 124
Y++ + + K +W K I+D+ E F + Y+ A+ G I V++++V Y ++ +
Sbjct: 3 YFYVYKTFTKGKWHNKKIIDILKENFNNKSETYFEDALAIGAITVNDKIVSTEYRMQFND 62
Query: 125 KISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLA 184
H +H+HEP + + + ++ V KP +P HP G Y TV +
Sbjct: 63 YFKHIVHQHEPK--QPHIPTIYIDDEITVVNKPFGIPCHPVGAYHYYTVTKTIFKN---K 117
Query: 185 PLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFP-EGEQVVDVN 243
P+ V+RLD VSG+LI+ N + + K K YIA+V G F EQ+ +
Sbjct: 118 PVGCVNRLDIPVSGVLII--NTCNQKRIHEYLLNSK--KIYIAKVIGQFIFSDEQLHKLG 173
Query: 244 INYNASAGRSTAESGDSLGDTPLK--------GKAACTKFTRISTNGTHSIVLCEPITGR 295
I S G+S SL P GK A T F +S +S++ C PITGR
Sbjct: 174 IEKRISNGKSIIIVNKSLLLDPKTKKQKISDDGKFAETHFELVSYQNQYSMIKCYPITGR 233
Query: 296 THQIRVHLQYTGYPIANDMLY 316
THQIRVHL Y G+PI D LY
Sbjct: 234 THQIRVHLAYIGFPILYDTLY 254
>gi|226486578|emb|CAX74366.1| pseudouridylate synthase [Schistosoma japonicum]
Length = 258
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 98/188 (52%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
DY R V PY F F ++ K RW + + D+ EF D G I V+
Sbjct: 65 DYYIDGIFRKVFPYNFIFKAYAKRRWINRKLCDVLQSEFSHMSNDVIAQKCNSGDILVNG 124
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V Y + + +S +HRHE PV+ + + D+L + KPPS+P+HPCG+Y N
Sbjct: 125 ARVDPDYVLNDNDLLSQQVHRHEFPVLNLPIEFIHDSHDMLVINKPPSIPIHPCGRYTLN 184
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
++ IL ++ L PL HRLDR+ SGLL++A++ + + QI + +V K YI V+G
Sbjct: 185 SITHILAKDYGLRPLRFTHRLDRMTSGLLLIAKDYDTSVRLQSQIASKEVTKHYICHVDG 244
Query: 232 VFPEGEQV 239
F + +
Sbjct: 245 CFQPNQSI 252
>gi|325090610|gb|EGC43920.1| DRAP deaminase [Ajellomyces capsulatus H88]
Length = 209
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 43 TPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAV 102
TP +P + Y G R V PY++ + ++ K RW G+ ++D+F EF+ RP +YY AV
Sbjct: 27 TPCDP-LPRPYYIEGGLRRVAPYHYTYNTYCKERWRGRGLLDVFGTEFRDRPKEYYQKAV 85
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
+ G + ++ + V + +++ ISH LHRHEPPV + + I+ ++ D++ + KP VPV
Sbjct: 86 EDGAVCINGKAVSIDTKIQNGDVISHTLHRHEPPVTSQPIGIIHEDDDMIVIDKPAGVPV 145
Query: 163 HPCGQYRKNTVVGILQAEHDLAPL-FPVHRLDRLVSGLLILA 203
HP G+Y N+++ I++AE + +P +RLDRL SG++ +
Sbjct: 146 HPAGRYNYNSILEIMKAERGNGWVPYPCNRLDRLTSGVMFIG 187
>gi|407044333|gb|EKE42524.1| RNA pseudouridylate synthase, putative [Entamoeba nuttalli P19]
Length = 389
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 140/265 (52%), Gaps = 20/265 (7%)
Query: 57 DGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCG--RIQVDEEMV 114
DG R V PY + F VK RW GK + ++ +EF D A + G +I+ + +
Sbjct: 54 DGMRWVVPYLYWFEVIVKERWIGKDVKEIMKKEFHYSDEDI-TKAFEKGLLKIKRNSNEI 112
Query: 115 PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV 174
+ V + + +HRHE PV + + I+ ++ DV+ V KP +P H G+Y +NTV+
Sbjct: 113 NGNCIVMEGDILLNQIHRHELPV-PYLLPIIFEDNDVIVVNKPSGIPTHSGGRYTENTVI 171
Query: 175 GILQAEHDLAPLFPVHRLDRLVSGLLILARNASKA-DLFRQQIEAGKVIKRYIARVNGVF 233
IL+ E ++ LF VHRLDRL SG+L++A+++ A ++ R I A K +YI RV G
Sbjct: 172 RILEKERNIK-LFGVHRLDRLTSGVLLIAKSSEIANEIQRHFINAHK---KYICRVIGYM 227
Query: 234 PEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTN--GTHSIVLCEP 291
+V+ I + G +GKA+ T F +I + +++ P
Sbjct: 228 DSC--IVNKPIIETPCITKQRVTVGS-------EGKASTTIFEQIQYDEKTDTTLLWAIP 278
Query: 292 ITGRTHQIRVHLQYTGYPIANDMLY 316
TGR HQIRVHL Y +PIAND +Y
Sbjct: 279 KTGRMHQIRVHLSYENHPIANDSMY 303
>gi|397609211|gb|EJK60267.1| hypothetical protein THAOC_19410, partial [Thalassiosira oceanica]
Length = 1044
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 149/317 (47%), Gaps = 41/317 (12%)
Query: 38 EIVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDY 97
EI +PP K Y G R P S VK RW G+++ L E D
Sbjct: 619 EIDMLQLCHPPAK--YRNDRGLRCPPPVVRLLSSKVKGRWVGRSLQWLLTNELS-LEEDS 675
Query: 98 YVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEP------- 149
K G I++D + V +S +++ Q + +H EPP++ + + +
Sbjct: 676 LEEQRKAGLIRIDGKSVHDLSVALRNMQTVDRIVHWQEPPIVVPEKLAVTRHSIGHLASG 735
Query: 150 DVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP--LFPVHRLDRLVSGLLILARNAS 207
D+ + KPPSVPVHP G Y NT++ +++A+ LAP L P+HR+DR SG L+ +A+
Sbjct: 736 DLFVIDKPPSVPVHPAGPYLANTLLRMVEAQEGLAPKSLTPLHRIDRCTSGCLLGTNSAA 795
Query: 208 KADLFRQQIEA---GKVIKRYIARVNGVFP---------------------EGEQVVDVN 243
A + + + + G + K Y+A V G FP + + V+ V+
Sbjct: 796 VAGIVQGLLASKKEGAIKKLYLAVVRGRFPCDPTTITLPSDHEYSCAISGRDEDNVIQVD 855
Query: 244 INYNASAGRSTAESGDSLGDTPLK--GKAACTKFTRIS--TNGTHSIVLCEPITGRTHQI 299
R + +SL ++ GK + + F +S + S++ C P+TGR HQ+
Sbjct: 856 APIATQLQREESRLCNSLMRRVIRNDGKPSQSLFKLLSYDSRNDRSLISCCPVTGRGHQL 915
Query: 300 RVHLQYTGYPIANDMLY 316
RVHLQ G+PI ND+ Y
Sbjct: 916 RVHLQLIGFPIHNDVEY 932
>gi|301106528|ref|XP_002902347.1| RNA pseudouridylate synthase, putative [Phytophthora infestans
T30-4]
gi|262098967|gb|EEY57019.1| RNA pseudouridylate synthase, putative [Phytophthora infestans
T30-4]
Length = 335
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 105/209 (50%), Gaps = 31/209 (14%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R ++PY F VK RWAG+++ +LFA EF DY V A + G +V+ E+ +
Sbjct: 79 RTIEPYVHRFAQFVKGRWAGRSLRELFASEFPTLSADYCVGAAQLGHFRVNGEVADLDKV 138
Query: 120 VKSSQKISHFLHRHEPPV-MAWDVSI------------LQKEPDVLTVC-KPPSVPVHPC 165
+ H HRHEP + + D SI + +E D L V KP +PVHP
Sbjct: 139 ITGGDFFEHIKHRHEPKIHLPVDDSIELSTLKSLSNTWIHEETDELMVVDKPSGIPVHPT 198
Query: 166 GQYRKNTVVGI--------LQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIE 217
G ++ N++ + L E + LFPVHRLDRL SGLLILA++A KA ++
Sbjct: 199 GSFQLNSLTHMLIRDRREALIEETEALKLFPVHRLDRLTSGLLILAKSADKARSLTAELT 258
Query: 218 AG---------KVIKRYIARVNGVFPEGE 237
A V K Y+ARV G FP+ E
Sbjct: 259 ATSSEGGIGSRSVQKYYVARVKGKFPDTE 287
>gi|290976301|ref|XP_002670879.1| predicted protein [Naegleria gruberi]
gi|284084442|gb|EFC38135.1| predicted protein [Naegleria gruberi]
Length = 464
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 143/285 (50%), Gaps = 34/285 (11%)
Query: 62 VKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE----MVPVS 117
VKP+ ++V+ RW KT +++ + EFK P ++ G I + + + +
Sbjct: 71 VKPHKTNHRTNVRTRWFKKTTMEVLSSEFK-MPEQVSKEMIEKGIITLTTQKPTSVSVLE 129
Query: 118 YTVKSSQKISHFLHRHEPPVMAWD-VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGI 176
Y ++S+ +I ++E PV+ + + +L + + L + KP S+PVHP G++ KN++ +
Sbjct: 130 YKLRSNDQIVTVDWKNEKPVLYREFIRVLYHDDEFLVIDKPSSIPVHPAGRFVKNSLHYL 189
Query: 177 LQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEG 236
L++ LF +HRLD++ SG+LI NA+ A ++ ++ G V K Y+A+V G FPE
Sbjct: 190 LESALG-RKLFLIHRLDKVTSGVLIHTWNAALAKSYQDTMKEGNVRKCYLAQVYGEFPET 248
Query: 237 EQVVDVNINYNASA-------------------------GRSTAESGDSLGDTPLKGKAA 271
E + ++ N + R+ + S P A
Sbjct: 249 ENMSGEHVLLNGQSFHKDKEGFIHVKNKMVYKQNDWTFIWRADSSENGSDSTDPKNTDTA 308
Query: 272 CTKFTRISTN--GTHSIVLCEPITGRTHQIRVHLQYTGYPIANDM 314
T RI + + SIV+ PITGRTHQIR HL+ GYPI ND+
Sbjct: 309 YTLVKRIYYDPASSRSIVIAIPITGRTHQIREHLRVMGYPIINDV 353
>gi|340504088|gb|EGR30574.1| hypothetical protein IMG5_129080 [Ichthyophthirius multifiliis]
Length = 405
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 117/219 (53%), Gaps = 14/219 (6%)
Query: 106 RIQVDEEMVPVSYTVKSSQK----ISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVP 161
RIQ+ + VK + H+ R EPPV+ I+ ++ + L V KPP +
Sbjct: 77 RIQIQVQKSLFFLQVKKQNRHNDLFEHYTLRIEPPVLNKLPKIIYEDENYLVVSKPPYMC 136
Query: 162 VHPCGQYRKNTVVGILQAEHDLA-PLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
VH G + NT++ IL+ + + LF +HRLD+L SG+LIL +N + F+++ K
Sbjct: 137 VHASGGHLHNTLIDILKYQMNYKNQLFTLHRLDKLTSGILILGKNKEISIKFQEE----K 192
Query: 221 VIKRYIARVNG-VFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI- 278
+ K+Y ARV G FPE + ++ N + + + G L +GK + T F +I
Sbjct: 193 IKKKYYARVEGNFFPEKQDQEEIICERNIAC--QSRKEGKYLCSDNKEGKYSKTIFKKIW 250
Query: 279 -STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ S++ C PITGRTHQIRVH + GYPI ND+ Y
Sbjct: 251 YDSKTNTSLIQCNPITGRTHQIRVHCSFLGYPIVNDINY 289
>gi|348680229|gb|EGZ20045.1| hypothetical protein PHYSODRAFT_312884 [Phytophthora sojae]
Length = 342
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 104/214 (48%), Gaps = 37/214 (17%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R+++PY F VK RWAG+T+ +LFA EF Y A + G I+V+ +
Sbjct: 82 RSIEPYVHRFALFVKGRWAGRTLRELFASEFPTLSTAYCARAAQLGLIRVNGVAAELDAV 141
Query: 120 VKSSQKISHFLHRHEPPV-------------MAWDVSILQKEPD-VLTVCKPPSVPVHPC 165
+K H HRHEP V + + E D +L V KP +PVHP
Sbjct: 142 IKGGDFFEHLKHRHEPSVHLPVDDATNSSTLTSLSARWIHLETDELLVVDKPSGIPVHPT 201
Query: 166 GQYRKNTVVGILQ-------------AEHDLAPLFPVHRLDRLVSGLLILARNASKADLF 212
G Y+ N++ +LQ AE L LFPVHRLDRL SGLLILA+ A+KA
Sbjct: 202 GSYQLNSLTHMLQHDRHGATKDKENEAETTLE-LFPVHRLDRLTSGLLILAKTANKARTL 260
Query: 213 RQQIE-------AG--KVIKRYIARVNGVFPEGE 237
++ AG V K Y+ARV G FP+ E
Sbjct: 261 TAELTVTLSVDGAGTRSVDKYYVARVKGEFPDDE 294
>gi|440791466|gb|ELR12704.1| RNA pseudouridine synthase [Acanthamoeba castellanii str. Neff]
Length = 272
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 116/257 (45%), Gaps = 55/257 (21%)
Query: 62 VKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVK 121
V+PY+F++ + K W G+ ++ + F P YY+ AV+ GR++V+++
Sbjct: 2 VRPYWFQYRARAKGHWVGQPLIRILTSHFHRHPPAYYLEAVETGRVKVNQQRAAPDQLFA 61
Query: 122 SSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH 181
++ + H +H HEP V + V I+ +++ V KP +P H Y+ NT+ IL+ E
Sbjct: 62 ATDLLHHDMHIHEPAVTSEPVQIIHSSDELVVVNKPAGLPCHEVSLYKYNTLSAILRLE- 120
Query: 182 DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
NA K + I G+V K YIAR
Sbjct: 121 ----------------------MNARKLHM---AIMTGQVGKFYIAR------------- 142
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPITGRTHQI 299
AE+G SL D KG+ A T F + S+V C P TGR HQI
Sbjct: 143 -------------AETGVSLVDYE-KGRTAHTIFEHAGYDSATDTSLVKCNPTTGRRHQI 188
Query: 300 RVHLQYTGYPIANDMLY 316
R HL + G+PIAND+LY
Sbjct: 189 RAHLNHLGFPIANDLLY 205
>gi|223998226|ref|XP_002288786.1| hypothetical protein THAPSDRAFT_261746 [Thalassiosira pseudonana
CCMP1335]
gi|220975894|gb|EED94222.1| hypothetical protein THAPSDRAFT_261746 [Thalassiosira pseudonana
CCMP1335]
Length = 383
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 134/270 (49%), Gaps = 38/270 (14%)
Query: 71 SHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQK---IS 127
S VK RW GK + + + EF + + I+V+ VPVS + QK +
Sbjct: 13 SAVKGRWCGKPLTTVLSSEFHEFSLKWMQQLIDARLIKVNG--VPVSKSDGLLQKEDTVE 70
Query: 128 HFLHRHEPPVMAWDVSILQKE--PD--------VLTVCKPPSVPVHPCGQYRKNTVVGIL 177
+H HEPP++ + L K PD + + KP SVPV+P G Y N+++ ++
Sbjct: 71 RVVHWHEPPIIVPETISLTKHSLPDTANCGNGILYCINKPASVPVYPSGPYYSNSLLMMV 130
Query: 178 QAEHDLAP--LFPVHRLDRLVSGLLI------LARNASKADLFRQQIEAGKVIKR-YIAR 228
+A+ L P L P HR+DR SG+L+ ++R R ++ IK+ Y+AR
Sbjct: 131 EAQEGLPPKSLVPCHRIDRATSGVLLCTIDSKVSRAVQGRMASRNEVGTQHPIKKLYLAR 190
Query: 229 VNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSI 286
V G FP+ V V A++ + S D GK A ++F +S + S+
Sbjct: 191 VQGKFPDPSSSVPVG----AASMMHRSVSRD--------GKQAISRFRLLSYDAATDQSL 238
Query: 287 VLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
V C PITGR HQ+RVHLQ+ G PI ND+ Y
Sbjct: 239 VSCCPITGRGHQLRVHLQFIGLPIHNDVEY 268
>gi|226486580|emb|CAX74367.1| pseudouridylate synthase [Schistosoma japonicum]
Length = 253
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 2/182 (1%)
Query: 52 DYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE 111
DY R V PY F F ++ K RW + + D+ EF D G I V+
Sbjct: 65 DYYIDGIFRKVFPYNFIFKAYAKRRWINRKLYDVLQSEFSHMSNDVIAQKCNSGDILVNG 124
Query: 112 EMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V Y + + +S +HRHE PV+ + + D+L + KPPS+P+HPCG+Y N
Sbjct: 125 ARVDPDYVLNDNDLLSQQVHRHEFPVLNLPIEFIHDSHDMLVINKPPSIPIHPCGRYTLN 184
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
++ IL ++ L PL HRLDR+ SGLL++A++ + + QI + +V K + R++
Sbjct: 185 SITHILAKDYSLRPLRFTHRLDRMTSGLLLIAKDYDTSVRLQSQIASKEVTK--VTRLSK 242
Query: 232 VF 233
+
Sbjct: 243 IL 244
>gi|260949943|ref|XP_002619268.1| hypothetical protein CLUG_00427 [Clavispora lusitaniae ATCC 42720]
gi|238846840|gb|EEQ36304.1| hypothetical protein CLUG_00427 [Clavispora lusitaniae ATCC 42720]
Length = 432
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 159/371 (42%), Gaps = 71/371 (19%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVD-- 110
Y+F + R+VKPYY E+ + K RW ++I ++ E G+ + A+ G I V
Sbjct: 5 YLFENSLRHVKPYYHEYKTPYKQRWHHRSIQEILTREL-GQNQNVVEHAIDQGHIYVSAN 63
Query: 111 --EEMVPVSYTVKSSQK--------ISHFLHRHEPPVM---------------------- 138
+ PV +++ I + H HEP V+
Sbjct: 64 NGKAGGPVLMRFSEARQRLLEPHDVIHNIQHMHEPCVLQEPISKSLDTTTSVDSARDGTL 123
Query: 139 -------------AWDVS----ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH 181
W V +L ++ ++L V KP VP HP G +R+N++ I++ E
Sbjct: 124 NGSVGGSLNGIVQKWRVVENTLVLYEDENILVVNKPAGVPTHPNGIFRRNSLTEIVRFEL 183
Query: 182 DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK---VIKRYIARVNGVFPEGEQ 238
++ ++P HRLD+ SG+L+LA+ +K Q++ K V K Y+ARV G FP
Sbjct: 184 GVS-VYPCHRLDKGTSGVLVLAK--TKTGKMLQEVLQNKKSHVEKWYVARVRGKFPFA-- 238
Query: 239 VVDVNINYNASAGRSTAESGDSLGDTPLKGKAACT-----KFTRISTNGTHSIVLCEPIT 293
+ +Y S S +G + P + T K S SIV C PI+
Sbjct: 239 ----SCSY-TSPVFSINTAGTGYLNIPNAERVPATSSTHFKMVSYSPELDESIVFCRPIS 293
Query: 294 GRTHQIRVHLQYTGYPIANDMLYLCEH-VTHREGMSADRAAAYSHHSPPPVSSDKSESSS 352
G+ HQIRVHL+ GYPI+ND LY E+ + H + A P DK+
Sbjct: 294 GKMHQIRVHLRNMGYPISNDPLYNAENGLGHAKNQLEKELYAQVLAEWPCFGIDKTIRPP 353
Query: 353 EDFSIDPMCTN 363
E + P N
Sbjct: 354 ETVDVTPFLLN 364
>gi|384491738|gb|EIE82934.1| hypothetical protein RO3G_07639 [Rhizopus delemar RA 99-880]
Length = 143
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 87/135 (64%)
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSV 160
A++ G + ++++ V + VK+S I H +HRHEPP + I+ ++ D+ + KP +
Sbjct: 9 AIERGLLTINDKPVTLDTIVKTSDVIGHKIHRHEPPCTDQPIGIVHEDQDLFVIDKPGGI 68
Query: 161 PVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220
PVHP G++R NTV+ +L+ E ++ LFP +RLD SGL+++A+N +A +++ AG
Sbjct: 69 PVHPAGRFRHNTVIHVLKKERNIPKLFPANRLDLPTSGLMLIAKNPERAKQLEREMSAGL 128
Query: 221 VIKRYIARVNGVFPE 235
+ K Y+ RV+G FPE
Sbjct: 129 IRKEYLCRVDGEFPE 143
>gi|283782368|ref|YP_003373123.1| RluA family pseudouridine synthase [Pirellula staleyi DSM 6068]
gi|283440821|gb|ADB19263.1| pseudouridine synthase, RluA family [Pirellula staleyi DSM 6068]
Length = 603
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 125/253 (49%), Gaps = 11/253 (4%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV-DEEMVPVSYTVKSSQKISHFLH 131
V + GK +++ A P D + GR++ D + + + VK+ ++ H
Sbjct: 309 VPQEYDGKPVIEFLAGILPHVPRDEWAQIAGEGRLRTSDHQPMVLESLVKAGDRVLH--- 365
Query: 132 RHEP----PVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
H+P P + D+ ++ ++ + V KP +P+H G++ +NT+ IL+ +D
Sbjct: 366 -HQPATIEPDVNVDIRVVYEDEAIAVVHKPAPLPLHASGRFHRNTLEWILREIYDPQKPR 424
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
PVHRLD SGL++ AR A L +QQ GKV K Y+A V+G E V I +
Sbjct: 425 PVHRLDANTSGLVLFARTRHFAKLLQQQFTQGKVEKFYLALVSGHPVEDRFVSTAPI--S 482
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTG 307
A AG + S D P + + T + ++V C+PITGRT+QIRVHL G
Sbjct: 483 AEAGVFGSRSVDEEAGLPAETRFEVLARTTTADGKPVALVRCQPITGRTNQIRVHLWQLG 542
Query: 308 YPIANDMLYLCEH 320
+PI + YL +
Sbjct: 543 HPIMGEQSYLADQ 555
>gi|375091637|ref|ZP_09737926.1| RluA family pseudouridine synthase [Helcococcus kunzii ATCC 51366]
gi|374563159|gb|EHR34481.1| RluA family pseudouridine synthase [Helcococcus kunzii ATCC 51366]
Length = 308
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 127/255 (49%), Gaps = 20/255 (7%)
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHE-PPVMAWD--VSILQKEPDVLTVCK 156
S +K G + V+++ V SY V ++ +IS L + P++A + + I+ ++ D+ + K
Sbjct: 31 SLIKNGDVLVNDKKVKPSYIVNNNDEISIDLSALDIKPILAENLPIEIVYQDDDIAIINK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP-------VHRLDRLVSGLLILARNASKA 209
P + HP + R NTVV L ++ + P VHRLD+ SGL+I+A N
Sbjct: 91 PIDIISHPTEKIRSNTVVNFLLSKFENLPTLNGEDRAGIVHRLDKDTSGLMIVALNEESM 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
++ + +IK+Y A VN F E E V++ NI+ N S + A S D GK
Sbjct: 151 KQLKKMFQNRNIIKKYRAIVNNRFSENEGVIEKNISRNMSNRKLMAISED--------GK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSA 329
A T + + ++ + + TGRTHQIRVH++ +PI D Y ++ + +SA
Sbjct: 203 YAKTAYKVLKQTSEYAYLDIDLFTGRTHQIRVHMKSINHPILGDADY--NNIKSKYNISA 260
Query: 330 DRAAAYSHHSPPPVS 344
AY P++
Sbjct: 261 QLLQAYRLEFDHPIT 275
>gi|297568139|ref|YP_003689483.1| pseudouridine synthase, RluA family [Desulfurivibrio alkaliphilus
AHT2]
gi|296924054|gb|ADH84864.1| pseudouridine synthase, RluA family [Desulfurivibrio alkaliphilus
AHT2]
Length = 334
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 122/240 (50%), Gaps = 1/240 (0%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
AG T++D A F + + + GR++V+ E VP + ++ ++S+ P
Sbjct: 24 AGGTVLDFVAGRFTYLTREQWQQELVDGRLRVNGEPVPPERLLAAADRVSYRGRELAEPP 83
Query: 138 MAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVS 197
+A S++ ++ D+L V KP +P HP G+Y ++T+ +LQ + V+RLDR S
Sbjct: 84 VASHFSVVYEDDDLLVVNKPAPLPCHPGGRYFRHTLWRLLQERCGVPKPLLVNRLDRETS 143
Query: 198 GLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN-ASAGRSTAE 256
GL+++A+ + A +Q + +V KRY+ V G FP G Q V + + AS R +
Sbjct: 144 GLVVVAKKRAAARDCARQWQEQQVEKRYLVLVEGEFPLGAQAVAGFLAPDPASLVRKKSR 203
Query: 257 SGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ P + T F ++ G S++ P+TGR HQIR L G+P+ D +Y
Sbjct: 204 FFPADQAAPAGAVSCATAFRLLALQGGISLLEARPLTGRCHQIRATLCSLGFPVVGDKIY 263
>gi|408794161|ref|ZP_11205766.1| pseudouridine synthase, RluA family [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408461396|gb|EKJ85126.1| pseudouridine synthase, RluA family [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 318
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 126/253 (49%), Gaps = 19/253 (7%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISH--FL 130
++ ++G TI+ +F D + + GRI V ++ ++ + +
Sbjct: 8 IRYPFSGNTILVFLTTKFPYHSKDEWQYLLDMGRIHVQGKVASAELVLQEGDSVVYEPIP 67
Query: 131 HRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVH 190
R + P + D +L++ + L + KP ++P+HP G+YR T++ +L+ ++ L PVH
Sbjct: 68 GRIQEPEVDTDYVVLKETEEFLFIDKPGNLPMHPAGRYRTRTLLNLLEEKYPLV--IPVH 125
Query: 191 RLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG-----VFPEGEQVVDVNIN 245
RLDR SG++I A++ +++ E +V K Y+A V G +F +G + N
Sbjct: 126 RLDRETSGIVIFAKSEESRTWLQKKFEKREVKKEYLAVVRGKFLNSIFLDGY----IGKN 181
Query: 246 YNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH--SIVLCEPITGRTHQIRVHL 303
+++ + S + D+ K T+F + + S+VL P+TGR HQIRV L
Sbjct: 182 LDSAIRKKMKFSLEEFSDS----KFVSTEFIPLDFIESQNLSLVLVRPLTGRIHQIRVSL 237
Query: 304 QYTGYPIANDMLY 316
Y GYPI D LY
Sbjct: 238 LYLGYPILGDKLY 250
>gi|413937018|gb|AFW71569.1| hypothetical protein ZEAMMB73_885155 [Zea mays]
Length = 70
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 53/61 (86%)
Query: 39 IVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYY 98
IVWQTPANPP DYI R+GRR V+PYYFEFISHVKNRWAGKTIVDLF +EFKGR DYY
Sbjct: 10 IVWQTPANPPESHDYIIRNGRRYVRPYYFEFISHVKNRWAGKTIVDLFTDEFKGRSRDYY 69
Query: 99 V 99
V
Sbjct: 70 V 70
>gi|418029431|ref|ZP_12667971.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|354689937|gb|EHE89903.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 304
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD---VSILQKEPDVLTVCKPP 158
V+ G I V+ + VSY V+ I + EP + + + I+ ++ DV+ V KP
Sbjct: 36 VQAGEILVNGKKSKVSYKVQKDDLIQVIVLPLEPLKLEAENIPLDIVYEDKDVIVVNKPQ 95
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + +T+V +L DLA P VHR+D+ SGLL++A+NA+ +
Sbjct: 96 GMVVHPAAGHPSHTLVNALLYHTRDLADSPEGFRPGIVHRIDKDTSGLLMVAKNAAARES 155
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q+ A ++Y+A V+G F E E +D I N + A KGK+A
Sbjct: 156 LEKQLAAKSNKRQYLAIVHGNFAEEEGTIDAPIGRNPEDRKQMA--------VVEKGKSA 207
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + +S+V C+ TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 208 VTHFKVLEQYQGYSLVECQLETGRTHQIRVHMAYIGHPLAGDPLY 252
>gi|183220733|ref|YP_001838729.1| putative ribosomal large subunit pseudouridine synthase [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
gi|189910834|ref|YP_001962389.1| pseudouridylate synthase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167775510|gb|ABZ93811.1| Pseudouridylate synthase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167779155|gb|ABZ97453.1| Putative ribosomal large subunit pseudouridine synthase [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 320
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 127/252 (50%), Gaps = 13/252 (5%)
Query: 71 SHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISH-- 128
S ++ + GKT+++ +F + + V+ GRI V + + + + I +
Sbjct: 6 SVIRPPFVGKTVIEYLTGKFPYHSLEEWTFLVEEGRITVSGNLASMHKPLLDGEVIEYNP 65
Query: 129 FLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP 188
R + P + + SIL++ D L V KP ++P+HP G+YR T++ L+ ++ + P
Sbjct: 66 IPGRIKEPEVDTNYSILKETEDFLFVEKPGNLPMHPAGRYRTKTLLSFLETKY--PKIIP 123
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD--VNINY 246
VHRLDR SG++I A++ +++ E V K Y A V G F + EQ +D + +
Sbjct: 124 VHRLDRETSGIVIFAKSEESRKWLQKKFETRVVYKEYFAIVLGKFTK-EQKLDGFIGRDI 182
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH--SIVLCEPITGRTHQIRVHLQ 304
++ + S D+ K+ T F I N S+VL +PITGR HQIR L
Sbjct: 183 HSVIRKKMIFSPVEFPDS----KSCATHFVPILYNEDKKISLVLVKPITGRIHQIRASLL 238
Query: 305 YTGYPIANDMLY 316
Y G+PI D +Y
Sbjct: 239 YLGFPIIGDKMY 250
>gi|116514036|ref|YP_812942.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|385815689|ref|YP_005852080.1| Pseudouridine synthase [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|418035576|ref|ZP_12674032.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|116093351|gb|ABJ58504.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|325125726|gb|ADY85056.1| Pseudouridine synthase [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|354690106|gb|EHE90061.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 304
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD---VSILQKEPDVLTVCKPP 158
V+ G I V+ + VSY V+ I + EP + + + I+ ++ DV+ V KP
Sbjct: 36 VQAGEILVNGKKSKVSYKVQKDDLIQVIVLPLEPLKLEAENIPLDIVYEDKDVIVVNKPQ 95
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + +T+V +L DLA P VHR+D+ SGLL++A+NA+ +
Sbjct: 96 GMVVHPAAGHPSHTLVNALLYHTRDLADSPEGFRPGIVHRIDKDTSGLLMVAKNAAARES 155
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q+ A ++Y+A V+G F E E +D I N + A KGK+A
Sbjct: 156 LEKQLAAKSNKRQYLAIVHGNFAEEEGTIDAPIGRNPKDRKQMA--------VVEKGKSA 207
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + +S+V C+ TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 208 VTHFKVLEQYQGYSLVECQLETGRTHQIRVHMAYIGHPLAGDPLY 252
>gi|402581854|gb|EJW75801.1| hypothetical protein WUBG_13289, partial [Wuchereria bancrofti]
Length = 169
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 85/140 (60%), Gaps = 1/140 (0%)
Query: 48 PVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRI 107
P + ++G R +KPY+ + + K RW G+ +VD+FAEEF Y +A K GRI
Sbjct: 29 PENVSFHIKNGIRYLKPYWSVYRTWAKGRWVGRRLVDIFAEEFVSLNRHYPAAACKLGRI 88
Query: 108 QVD-EEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCG 166
V+ +M V+Y V+ + I H HRHE P++ + ++ + D+L V KPPS+PVHPCG
Sbjct: 89 WVNCNQMTNVNYIVQQNDSIEHIGHRHEHPILDHYIKVIDNDNDMLVVDKPPSMPVHPCG 148
Query: 167 QYRKNTVVGILQAEHDLAPL 186
+Y +TV+G+L+ + L L
Sbjct: 149 RYSVHTVLGMLREQRGLRGL 168
>gi|45658116|ref|YP_002202.1| ribosomal large subunit pseudouridine synthase C [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
gi|45601358|gb|AAS70839.1| ribosomal large subunit pseudouridine synthase C [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
Length = 394
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 149/353 (42%), Gaps = 67/353 (18%)
Query: 67 FEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKI 126
F+F+ + +G + +++F + + GRI + + V ++K I
Sbjct: 44 FQFL--ISKEESGTRLDHFLSKKFTYHSRTTWQKEITEGRILISSKTVKPGVSLKEGDLI 101
Query: 127 S-HFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP 185
S H + + EPPV D IL ++ + V KP +P+HP G YRK ++ L+
Sbjct: 102 SYHPIQKEEPPVRN-DYKILYEDEFFVAVDKPGDLPIHPAGIYRKGNLLTFLKESGKFKD 160
Query: 186 LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQ------- 238
LF VHRLDR SG+++ A+N+ A + + G + K YI +V+G FP+ +
Sbjct: 161 LFTVHRLDRETSGVILFAKNSEIASILSKSFSLGNIQKYYITKVHGNFPKRKSAYGILKP 220
Query: 239 -----------VVDVNINYNASAGR-----STAESGDSLGDTPL------KGKAACTKFT 276
V + N+ + S E + + T KG+ + KF+
Sbjct: 221 DLSSKIRKKRTFVPLKFNFLKRNKKYLFENSLIEKQEEISLTYFQKIEYDKGRESKFKFS 280
Query: 277 RI------------------STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY-- 316
+I +S +LC+PITGR HQIR L G+P+ D LY
Sbjct: 281 KIEFQFKNVNNEKIKSVFLDQEKDCYSFLLCKPITGRMHQIRATLFSLGFPLFGDKLYGK 340
Query: 317 ----LCEHV-------THREGMSADRAAAYSHHSPPPVSSDKSESSS---EDF 355
E + T R GM +Y+ PV++ K + ++ EDF
Sbjct: 341 DEKVFLEFIEGKNPDLTTRLGMKRQALHSYAVCLNHPVTNQKMKITAPIPEDF 393
>gi|219110967|ref|XP_002177235.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411770|gb|EEC51698.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]
Length = 168
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 7/166 (4%)
Query: 154 VC-KPPSVPVHPCGQYRKNTVVGILQAEHDL--APLFPVHRLDRLVSGLLILARNASKAD 210
VC KP SVPVHP G + N++ +++A+ L L PVHR DR+ SGL + ++++ A
Sbjct: 6 VCNKPSSVPVHPAGPFLSNSLTIMVEAQVGLQCGSLKPVHRTDRVTSGLTLCCKSSAVAR 65
Query: 211 LFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKA 270
+F + + G V K Y+ARV+G FP + ++ +A+ +G + D+ K
Sbjct: 66 IFHRCLSEGTVDKLYVARVHGKFPS----TNSEMHLDAAVHTLDPANGVRIVDSAGKPSK 121
Query: 271 ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ K + S++ C+PITGR HQ+RVHLQ GYPI ND Y
Sbjct: 122 SVFKLVDFNQAENVSVIACQPITGRNHQLRVHLQMLGYPIVNDTQY 167
>gi|24214190|ref|NP_711671.1| ribosomal large subunit pseudouridine synthase [Leptospira
interrogans serovar Lai str. 56601]
gi|386073662|ref|YP_005987979.1| ribosomal large subunit pseudouridine synthase [Leptospira
interrogans serovar Lai str. IPAV]
gi|418668829|ref|ZP_13230229.1| RNA pseudouridine synthase [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418691804|ref|ZP_13252888.1| RNA pseudouridine synthase [Leptospira interrogans str. FPW2026]
gi|418731336|ref|ZP_13289742.1| RNA pseudouridine synthase [Leptospira interrogans str. UI 12758]
gi|421086109|ref|ZP_15546960.1| RNA pseudouridine synthase [Leptospira santarosai str. HAI1594]
gi|421101738|ref|ZP_15562349.1| RNA pseudouridine synthase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|24195091|gb|AAN48689.1| ribosomal large subunit pseudouridine synthase [Leptospira
interrogans serovar Lai str. 56601]
gi|353457451|gb|AER01996.1| ribosomal large subunit pseudouridine synthase [Leptospira
interrogans serovar Lai str. IPAV]
gi|400358566|gb|EJP14646.1| RNA pseudouridine synthase [Leptospira interrogans str. FPW2026]
gi|410368411|gb|EKP23788.1| RNA pseudouridine synthase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410431674|gb|EKP76034.1| RNA pseudouridine synthase [Leptospira santarosai str. HAI1594]
gi|410755561|gb|EKR17191.1| RNA pseudouridine synthase [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410774061|gb|EKR54081.1| RNA pseudouridine synthase [Leptospira interrogans str. UI 12758]
gi|456988948|gb|EMG23862.1| RNA pseudouridine synthase [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 365
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 149/353 (42%), Gaps = 67/353 (18%)
Query: 67 FEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKI 126
F+F+ + +G + +++F + + GRI + + V ++K I
Sbjct: 15 FQFL--ISKEESGTRLDHFLSKKFTYHSRTTWQKEITEGRILISSKTVKPGVSLKEGDLI 72
Query: 127 S-HFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP 185
S H + + EPPV D IL ++ + V KP +P+HP G YRK ++ L+
Sbjct: 73 SYHPIQKEEPPVRN-DYKILYEDEFFVAVDKPGDLPIHPAGIYRKGNLLTFLKESGKFKD 131
Query: 186 LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQ------- 238
LF VHRLDR SG+++ A+N+ A + + G + K YI +V+G FP+ +
Sbjct: 132 LFTVHRLDRETSGVILFAKNSEIASILSKSFSLGNIQKYYITKVHGNFPKRKSAYGILKP 191
Query: 239 -----------VVDVNINYNASAGR-----STAESGDSLGDTPL------KGKAACTKFT 276
V + N+ + S E + + T KG+ + KF+
Sbjct: 192 DLSSKIRKKRTFVPLKFNFLKRNKKYLFENSLIEKQEEISLTYFQKIEYDKGRESKFKFS 251
Query: 277 RI------------------STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY-- 316
+I +S +LC+PITGR HQIR L G+P+ D LY
Sbjct: 252 KIEFQFKNVNNEKIKSVFLDQEKDCYSFLLCKPITGRMHQIRATLFSLGFPLFGDKLYGK 311
Query: 317 ----LCEHV-------THREGMSADRAAAYSHHSPPPVSSDKSESSS---EDF 355
E + T R GM +Y+ PV++ K + ++ EDF
Sbjct: 312 DEKVFLEFIEGKNPDLTTRLGMKRQALHSYAVCLNHPVTNQKMKITAPIPEDF 364
>gi|456822197|gb|EMF70683.1| RNA pseudouridine synthase [Leptospira interrogans serovar Canicola
str. LT1962]
Length = 365
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 135/315 (42%), Gaps = 65/315 (20%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKIS-HFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVH 163
GRI + + V ++K IS H + + EPPV D IL ++ + V KP +P+H
Sbjct: 51 GRILISSKTVKPGVSLKEGDLISYHPIQKEEPPVRN-DYKILYEDEFFVAVDKPGDLPIH 109
Query: 164 PCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIK 223
P G YRK ++ L+ LF VHRLDR SG+++ A+N+ A + + G + K
Sbjct: 110 PAGIYRKGNLLTFLKESGKFKDLFTVHRLDRETSGVILFAKNSEIASILSKSFSLGNIQK 169
Query: 224 RYIARVNGVFPEGEQ------------------VVDVNINYNASAGR-----STAESGDS 260
YI +V+G FP+ + V + N+ + S E +
Sbjct: 170 YYITKVHGNFPKRKSAYGILKPDLSSKIRKKRTFVPLKFNFLKRNKKYLFENSLIEKQEE 229
Query: 261 LGDTPL------KGKAACTKFTRI------------------STNGTHSIVLCEPITGRT 296
+ T KG+ + KF++I +S +LC+PITGR
Sbjct: 230 ISLTYFQKIEYDKGRESKFKFSKIEFQFKNVNNEKIKSVFLDQEKDCYSFLLCKPITGRM 289
Query: 297 HQIRVHLQYTGYPIANDMLY------LCEHV-------THREGMSADRAAAYSHHSPPPV 343
HQIR L G+P+ D LY E + T R GM +Y+ PV
Sbjct: 290 HQIRATLFSLGFPLFGDKLYGKDEKVFLEFIEGKNPDLTTRLGMKRQALHSYAVCLNHPV 349
Query: 344 SSDKSESSS---EDF 355
++ K + ++ EDF
Sbjct: 350 TNQKMKITAPIPEDF 364
>gi|418708011|ref|ZP_13268824.1| RNA pseudouridine synthase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|421122665|ref|ZP_15582948.1| RNA pseudouridine synthase [Leptospira interrogans str. Brem 329]
gi|410344565|gb|EKO95731.1| RNA pseudouridine synthase [Leptospira interrogans str. Brem 329]
gi|410771501|gb|EKR46702.1| RNA pseudouridine synthase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|455792943|gb|EMF44676.1| RNA pseudouridine synthase [Leptospira interrogans serovar Lora
str. TE 1992]
gi|456972917|gb|EMG13215.1| RNA pseudouridine synthase [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 365
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 149/353 (42%), Gaps = 67/353 (18%)
Query: 67 FEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKI 126
F+F+ + +G + +++F + + GRI + + V ++K I
Sbjct: 15 FQFL--ISKEESGTRLDHFLSKKFTYHSRTAWQKEITEGRILISSKTVKPGVSLKEGDLI 72
Query: 127 S-HFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP 185
S H + + EPPV D IL ++ + V KP +P+HP G YRK ++ L+
Sbjct: 73 SYHPIQKEEPPVRN-DYKILYEDEFFVAVDKPGDLPIHPAGIYRKGNLLTFLKESGKFKD 131
Query: 186 LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQ------- 238
LF VHRLDR SG+++ A+N+ A + + G + K YI +V+G FP+ +
Sbjct: 132 LFTVHRLDRETSGVVLFAKNSEIASILSKSFSLGNIQKYYITKVHGNFPKRKSAYGILKP 191
Query: 239 -----------VVDVNINYNASAGR-----STAESGDSLGDTPL------KGKAACTKFT 276
V + N+ + S E + + T KG+ + KF+
Sbjct: 192 DLSSKIRKKRTFVPLKFNFLKRNKKYLFENSLIEKQEEISLTYFQKIEYDKGRESKFKFS 251
Query: 277 RI------------------STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY-- 316
+I +S +LC+PITGR HQIR L G+P+ D LY
Sbjct: 252 KIEFQFKNVNNEKIKSVFLDQEKDCYSFLLCKPITGRMHQIRATLFSLGFPLFGDKLYGK 311
Query: 317 ----LCEHV-------THREGMSADRAAAYSHHSPPPVSSDKSESSS---EDF 355
E + T R GM +Y+ PV++ K + ++ EDF
Sbjct: 312 DEKVFLEFIEGKNPDLTTRLGMKRQALHSYAVCLNHPVTNQKMKITAPIPEDF 364
>gi|417759318|ref|ZP_12407355.1| RNA pseudouridine synthase [Leptospira interrogans str. 2002000624]
gi|417773157|ref|ZP_12421042.1| RNA pseudouridine synthase [Leptospira interrogans str. 2002000621]
gi|418674904|ref|ZP_13236201.1| RNA pseudouridine synthase [Leptospira interrogans str. 2002000623]
gi|409944793|gb|EKN90373.1| RNA pseudouridine synthase [Leptospira interrogans str. 2002000624]
gi|410577153|gb|EKQ40150.1| RNA pseudouridine synthase [Leptospira interrogans str. 2002000621]
gi|410578120|gb|EKQ45984.1| RNA pseudouridine synthase [Leptospira interrogans str. 2002000623]
Length = 365
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 149/353 (42%), Gaps = 67/353 (18%)
Query: 67 FEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKI 126
F+F+ + +G + +++F + + GRI + + V ++K I
Sbjct: 15 FQFL--ISKEESGTRLDHFLSKKFTYHSRTTWQKEITEGRILISSKTVKPGVSLKEGDLI 72
Query: 127 S-HFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP 185
S H + + EPPV D IL ++ + V KP +P+HP G YRK ++ L+
Sbjct: 73 SYHPIQKEEPPVRN-DYKILYEDEFFVAVDKPGDLPIHPAGIYRKGNLLTFLKESGKFKD 131
Query: 186 LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQ------- 238
LF VHRLDR SG+++ A+N+ A + + G + K YI +V+G FP+ +
Sbjct: 132 LFTVHRLDRETSGVVLFAKNSEIASILSKSFSLGNIQKYYITKVHGNFPKRKSAYGILKP 191
Query: 239 -----------VVDVNINYNASAGR-----STAESGDSLGDTPL------KGKAACTKFT 276
V + N+ + S E + + T KG+ + KF+
Sbjct: 192 DLSSKIRKKRTFVPLKFNFLKRNKKYLFENSLIEKQEEISLTYFQKIEYDKGRESKFKFS 251
Query: 277 RI------------------STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY-- 316
+I +S +LC+PITGR HQIR L G+P+ D LY
Sbjct: 252 KIEFQFKNVNNEKIKSVFLDQEKDCYSFLLCKPITGRMHQIRATLFSLGFPLFGDKLYGK 311
Query: 317 ----LCEHV-------THREGMSADRAAAYSHHSPPPVSSDKSESSS---EDF 355
E + T R GM +Y+ PV++ K + ++ EDF
Sbjct: 312 DEKVFLEFIEGKNPDLTTRLGMKRQALHSYAVCLNHPVTNQKMKITAPIPEDF 364
>gi|417782634|ref|ZP_12430358.1| RNA pseudouridine synthase [Leptospira interrogans str. C10069]
gi|418722697|ref|ZP_13281671.1| RNA pseudouridine synthase [Leptospira interrogans str. UI 12621]
gi|409954049|gb|EKO08544.1| RNA pseudouridine synthase [Leptospira interrogans str. C10069]
gi|409963531|gb|EKO27254.1| RNA pseudouridine synthase [Leptospira interrogans str. UI 12621]
Length = 365
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 149/353 (42%), Gaps = 67/353 (18%)
Query: 67 FEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKI 126
F+F+ + +G + +++F + + GRI + + V ++K I
Sbjct: 15 FQFL--ISKEESGTRLDHFLSKKFTYHSRTTWQKEITEGRILISSKTVKPGVSLKEGDLI 72
Query: 127 S-HFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP 185
S H + + EPPV D IL ++ + V KP +P+HP G YRK ++ L+
Sbjct: 73 SYHPIQKKEPPVRN-DYKILYEDEFFVAVDKPGDLPIHPAGIYRKGNLLTFLKESGKFKD 131
Query: 186 LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQ------- 238
LF VHRLDR SG+++ A+N+ A + + G + K YI +V+G FP+ +
Sbjct: 132 LFTVHRLDRETSGVVLFAKNSEIASILSKSFSLGNIQKYYITKVHGNFPKRKSAYGILKP 191
Query: 239 -----------VVDVNINYNASAGR-----STAESGDSLGDTPL------KGKAACTKFT 276
V + N+ + S E + + T KG+ + KF+
Sbjct: 192 DLSSKIRKKRTFVPLKFNFLKRNKKYLFENSLIEKQEEISLTYFQKIEYDKGRESKFKFS 251
Query: 277 RI------------------STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY-- 316
+I +S +LC+PITGR HQIR L G+P+ D LY
Sbjct: 252 KIEFQFKNVNNEKIKSVFLDQEKDCYSFLLCKPITGRMHQIRATLFSLGFPLFGDKLYGK 311
Query: 317 ----LCEHV-------THREGMSADRAAAYSHHSPPPVSSDKSESSS---EDF 355
E + T R GM +Y+ PV++ K + ++ EDF
Sbjct: 312 DEKVFLEFIEGKNPDLTTRLGMKRQALHSYAVCLNHPVTNQKMKITAPIPEDF 364
>gi|417764742|ref|ZP_12412709.1| RNA pseudouridine synthase [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400353186|gb|EJP05362.1| RNA pseudouridine synthase [Leptospira interrogans serovar
Bulgarica str. Mallika]
Length = 365
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 134/315 (42%), Gaps = 65/315 (20%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKIS-HFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVH 163
GRI + + V ++K IS H + + EPPV D IL ++ + V KP +P+H
Sbjct: 51 GRILISSKTVKPGVSLKEGDLISYHPIQKEEPPVRN-DYKILYEDEFFVAVDKPGDLPIH 109
Query: 164 PCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIK 223
P G YRK ++ L+ LF VHRLDR SG+++ A+N+ A + + G + K
Sbjct: 110 PAGIYRKGNLLTFLKESGKFKDLFTVHRLDRETSGVILFAKNSEIASILSKSFSLGNIQK 169
Query: 224 RYIARVNGVFPEGEQ------------------VVDVNINYNASAGR-----STAESGDS 260
YI +V G FP+ + V + N+ + S E +
Sbjct: 170 YYITKVYGNFPKRKSAYGILKPDLSSKIRKKRTFVPLKFNFLKRNKKYLFENSLIEKQEE 229
Query: 261 LGDTPL------KGKAACTKFTRI------------------STNGTHSIVLCEPITGRT 296
+ T KG+ + KF++I +S +LC+PITGR
Sbjct: 230 ISLTYFQKIEYDKGRESKFKFSKIEFQFKNVNNEKIKSVFLNQEKDCYSFLLCKPITGRM 289
Query: 297 HQIRVHLQYTGYPIANDMLY------LCEHV-------THREGMSADRAAAYSHHSPPPV 343
HQIR L G+P+ D LY E + T R GM +Y+ PV
Sbjct: 290 HQIRATLFSLGFPLFGDKLYGKDEKVFLEFIEGKNPDLTTRLGMKRQALHSYAVCLNHPV 349
Query: 344 SSDKSESSS---EDF 355
++ K + ++ EDF
Sbjct: 350 TNQKMKITAPIPEDF 364
>gi|418716695|ref|ZP_13276658.1| RNA pseudouridine synthase [Leptospira interrogans str. UI 08452]
gi|410787466|gb|EKR81198.1| RNA pseudouridine synthase [Leptospira interrogans str. UI 08452]
Length = 365
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 134/315 (42%), Gaps = 65/315 (20%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKIS-HFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVH 163
GRI + + V ++K IS H + + EPPV D IL ++ + V KP +P+H
Sbjct: 51 GRILISSKTVKPGVSLKEGDLISYHPIQKEEPPVRN-DYKILYEDEFFVAVDKPGDLPIH 109
Query: 164 PCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIK 223
P G YRK ++ L+ LF VHRLDR SG+++ A+N+ A + + G + K
Sbjct: 110 PAGIYRKGNLLTFLKESGKFKDLFTVHRLDRETSGVILFAKNSEIASILSKSFSLGNIQK 169
Query: 224 RYIARVNGVFPEGEQ------------------VVDVNINYNASAGR-----STAESGDS 260
YI +V G FP+ + V + N+ + S E +
Sbjct: 170 YYITKVYGNFPKRKSAYGILKPDLSSKIRKKRTFVPLKFNFLKRNKKYLFENSFIEKQEE 229
Query: 261 LGDTPL------KGKAACTKFTRI------------------STNGTHSIVLCEPITGRT 296
+ T KG+ + KF++I +S +LC+PITGR
Sbjct: 230 ISLTYFQKIEYDKGRESKFKFSKIEFQFKNVNNEKIKSVFLNQEKDCYSFLLCKPITGRM 289
Query: 297 HQIRVHLQYTGYPIANDMLY------LCEHV-------THREGMSADRAAAYSHHSPPPV 343
HQIR L G+P+ D LY E + T R GM +Y+ PV
Sbjct: 290 HQIRATLFSLGFPLFGDKLYGKDEKVFLEFIEGKNPDLTTRLGMKRQALHSYAVCLNHPV 349
Query: 344 SSDKSESSS---EDF 355
++ K + ++ EDF
Sbjct: 350 TNQKMKITAPIPEDF 364
>gi|300812431|ref|ZP_07092861.1| pseudouridine synthase, RluA family [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300496598|gb|EFK31690.1| pseudouridine synthase, RluA family [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 304
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD---VSILQKEPDVLTVCKPP 158
V+ G + V+ + VSY V+ I + EP + + + I+ ++ DV+ V KP
Sbjct: 36 VQAGEVLVNGKKSKVSYKVQKGDLIQVTVLPLEPLKLEAENIPLDIVYEDEDVIVVNKPQ 95
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + +T+V +L DLA P VHR+D+ SGLL++A+NA+ +
Sbjct: 96 GMVVHPAAGHPSHTLVNALLYHTRDLADSPEGFRPGIVHRIDKDTSGLLMVAKNAAARES 155
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q+ A ++Y+A V+G F E E +D I N + A KGK+A
Sbjct: 156 LEKQLAAKSNKRQYLAIVHGNFAEEEGTIDAPIGRNPKDRKQMA--------VVEKGKSA 207
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + +S+V C+ TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 208 VTHFKVLEQYQGYSLVECQLETGRTHQIRVHMAYIGHPLAGDPLY 252
>gi|418699707|ref|ZP_13260659.1| RNA pseudouridine synthase [Leptospira interrogans serovar Bataviae
str. L1111]
gi|418706474|ref|ZP_13267322.1| RNA pseudouridine synthase [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|421114542|ref|ZP_15574958.1| RNA pseudouridine synthase [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|421126504|ref|ZP_15586736.1| RNA pseudouridine synthase [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421137504|ref|ZP_15597589.1| RNA pseudouridine synthase [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410013830|gb|EKO71905.1| RNA pseudouridine synthase [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|410018318|gb|EKO85158.1| RNA pseudouridine synthase [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410436056|gb|EKP85180.1| RNA pseudouridine synthase [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410761204|gb|EKR27390.1| RNA pseudouridine synthase [Leptospira interrogans serovar Bataviae
str. L1111]
gi|410764099|gb|EKR34818.1| RNA pseudouridine synthase [Leptospira interrogans serovar
Hebdomadis str. R499]
Length = 365
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 134/315 (42%), Gaps = 65/315 (20%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKIS-HFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVH 163
GRI + + V ++K IS H + + EPPV D IL ++ + V KP +P+H
Sbjct: 51 GRILISSKTVKPGVSLKEGDLISYHPIQKEEPPVRN-DYKILYEDEFFVAVDKPGDLPIH 109
Query: 164 PCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIK 223
P G YRK ++ L+ LF VHRLDR SG+++ A+N+ A + + G + K
Sbjct: 110 PAGIYRKGNLLTFLKESGKFKDLFTVHRLDRETSGVILFAKNSEIASILSKSFSLGNIQK 169
Query: 224 RYIARVNGVFPEGEQ------------------VVDVNINYNASAGR-----STAESGDS 260
YI +V G FP+ + V + N+ + S E +
Sbjct: 170 YYITKVYGNFPKRKSAYGILKPDLSSKIRKKRTFVPLKFNFLKRNKKYLFENSFIEKQEE 229
Query: 261 LGDTPL------KGKAACTKFTRI------------------STNGTHSIVLCEPITGRT 296
+ T KG+ + KF++I +S +LC+PITGR
Sbjct: 230 ISLTYFQKIEYDKGRESKFKFSKIEFQFKNVNNEKIKSVFLDQEKDCYSFLLCKPITGRM 289
Query: 297 HQIRVHLQYTGYPIANDMLY------LCEHV-------THREGMSADRAAAYSHHSPPPV 343
HQIR L G+P+ D LY E + T R GM +Y+ PV
Sbjct: 290 HQIRATLFSLGFPLFGDKLYGKDEKVFLEFIEGKNPDLTTRLGMKRQALHSYAVCLNHPV 349
Query: 344 SSDKSESSS---EDF 355
++ K + ++ EDF
Sbjct: 350 TNQKMKITAPIPEDF 364
>gi|313123676|ref|YP_004033935.1| pseudouridine synthase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
gi|312280239|gb|ADQ60958.1| Pseudouridine synthase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
Length = 304
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD---VSILQKEPDVLTVCKPP 158
V+ G + V+ + VSY V+ I + EP + + + I+ ++ D++ V KP
Sbjct: 36 VQAGEVLVNGKKSKVSYKVQKGDLIQVTVLPLEPLKLEAENIPLDIVYEDEDIIVVNKPQ 95
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + +T+V +L DLA P VHR+D+ SGLL++A+NA+ +
Sbjct: 96 GMVVHPAAGHPSHTLVNALLYHTRDLADSPEGFRPGIVHRIDKDTSGLLMVAKNAAARES 155
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q+ A ++Y+A V+G F E E +D I N + A KGK+A
Sbjct: 156 LEKQLAAKSNKRQYLAIVHGNFAEEEGTIDAPIGRNPKDRKQMA--------VVEKGKSA 207
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + +S+V C+ TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 208 VTHFKVLEQYQGYSLVECQLETGRTHQIRVHMAYIGHPLAGDPLY 252
>gi|325111150|ref|YP_004272218.1| hypothetical protein Plabr_4625 [Planctomyces brasiliensis DSM
5305]
gi|324971418|gb|ADY62196.1| UPF0176 protein yceA [Planctomyces brasiliensis DSM 5305]
Length = 621
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 128/255 (50%), Gaps = 18/255 (7%)
Query: 72 HVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLH 131
+V ++ T++D A+ + + S + G I+ + V Q+ L
Sbjct: 320 NVPQKYHDWTLLDFLADYHPHVSREDWASVCEAGLIRYRDRAWQADQLVWEGQR----LL 375
Query: 132 RHEPPVMAWDVS----ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
R EP + DV+ ++ + ++ KP +PVHPCG++ KN++ +L L
Sbjct: 376 RLEPNTIEPDVNPNIKLITWQNQLVVFDKPAPLPVHPCGRFNKNSMTMLLDLAFPETKLR 435
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
P HRLD +GL++ + + ++Q E G+ K Y+ RVNG E + D+ I+
Sbjct: 436 PAHRLDANTTGLIVFTSHRDHSLRIQRQFERGEAEKTYLCRVNGQPTEEKFRCDLPIS-- 493
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRIS--TNGTHSIVLCEPITGRTHQIRVHLQY 305
R TAE+G D G +A T+F + +GT ++V +P+TGRT+QIRVHL +
Sbjct: 494 ----RDTAEAGARCIDEE-NGLSASTEFRVLKRLDDGT-ALVEAKPLTGRTNQIRVHLWH 547
Query: 306 TGYPIANDMLYLCEH 320
G+PI ND +YL E
Sbjct: 548 LGFPILNDSVYLPEQ 562
>gi|116627406|ref|YP_820025.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus LMD-9]
gi|116100683|gb|ABJ65829.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus LMD-9]
Length = 296
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 22/228 (9%)
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVC 155
A+K G + V+ ++ Y VK I++ L E V+ + + I+ ++ DV V
Sbjct: 30 AIKAGTVLVNGKLAKAKYVVKEGDVITYVLPEEE--VLEYKAEDIPLDIIYEDADVAVVN 87
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 88 KPQGIVVHPSAGHTSGTLVNALMYHVKDLSSINGVVRPGIVHRIDKDTSGLLMIAKNDKA 147
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
+ +++ K +++Y+A V+G P V++ A GRS + KG
Sbjct: 148 HNALAAELKDKKSLRKYVAIVHGNLPNDRGVIE------APIGRSDKDRKKQA--VTAKG 199
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T+FT + G +++V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 200 KPAVTRFTVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|53804453|ref|YP_113936.1| ribosomal large subunit pseudouridine synthase C [Methylococcus
capsulatus str. Bath]
gi|53758214|gb|AAU92505.1| ribosomal large subunit pseudouridine synthase C [Methylococcus
capsulatus str. Bath]
Length = 316
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 117/251 (46%), Gaps = 24/251 (9%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
AG+ I + KG P + ++ G+++++ K+ Q+++ PP+
Sbjct: 22 AGQRIDNFLFSRLKGVPKSHVYRILRTGQVRIN------GGRSKAQQRLNEGDVVRIPPL 75
Query: 138 -----------MAW-DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP 185
W + IL ++ D+L V KP + VH R + G+ A D
Sbjct: 76 RLAEAPEAGIPTPWLENRILHEDEDLLVVNKPAGMAVHGGSGLRFGVIEGLRAAREDARF 135
Query: 186 LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNIN 245
L VHRLDR SG L++A+ S +Q V K Y+A +GV+ QVVD +
Sbjct: 136 LELVHRLDRDTSGCLLIAKRRSALRQLHEQFRGEGVDKTYLALFSGVWARRRQVVDAPLL 195
Query: 246 YNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQY 305
N +SG+ + +GKAA T+F R+ ++V P+TGRTHQIRVH +
Sbjct: 196 KN------VLQSGERMVKISSEGKAAITEFRRLEPLSGATLVEARPVTGRTHQIRVHARS 249
Query: 306 TGYPIANDMLY 316
G+P+A D Y
Sbjct: 250 LGHPLAGDERY 260
>gi|387761789|ref|YP_006068766.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius 57.I]
gi|339292556|gb|AEJ53903.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius 57.I]
Length = 296
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 22/228 (9%)
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVC 155
A+K G + V+ + Y VK I++ L E V+ + + I+ ++ DV V
Sbjct: 30 AIKAGTVLVNGKSAKAKYAVKEGDVITYELPEEE--VLEYKAEDIPLDIIYEDADVAVVN 87
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 88 KPQGMVVHPSAGHTSGTLVNALMYHVKDLSSINGVVRPGIVHRIDKDTSGLLMIAKNDKA 147
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
+ +++ K +++Y+A V+G P V++ I +A + A + KG
Sbjct: 148 HNALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPIGRSAKDRKKQAVTA--------KG 199
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T+FT + G +++V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 200 KPAVTRFTVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|422843703|ref|ZP_16890413.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
gi|325686216|gb|EGD28262.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 304
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD---VSILQKEPDVLTVCKPP 158
V+ G + V+ + VSY V+ I + EP + + + I+ ++ D++ V KP
Sbjct: 36 VQAGEVLVNGKKSKVSYKVQKGDLIQVTVLPLEPLKLEAENIPLDIVYEDEDIIVVNKPQ 95
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + +T+V +L DLA P VHR+D+ SGLL++A+NA+ +
Sbjct: 96 GMVVHPAVGHPSHTLVNALLYHTRDLADSPEGFRPGIVHRIDKDTSGLLMVAKNAAARES 155
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q+ A ++Y+A V+G F E E +D I N + A KGK+A
Sbjct: 156 LEKQLAAKSNKRQYLAIVHGNFAEEEGTIDAPIGRNPKDRKQMA--------VVEKGKSA 207
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + +S+V C+ TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 208 VTHFKVLEQYQGYSLVECQLETGRTHQIRVHMAYIGHPLAGDPLY 252
>gi|374705008|ref|ZP_09711878.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
S9]
Length = 317
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 117/250 (46%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + + KG P ++ G ++V++ + Y ++ + R
Sbjct: 21 AGQRIDNFLRTQLKGVPKTLIYRILRKGEVRVNKGRIKPEYKIQVGDIVRVPPLRLPERD 80
Query: 134 EPPVMAW------DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + SI+ ++ +L + KP + VH + Q D L
Sbjct: 81 EPAPLALGLLERLEASIVYEDKALLVINKPAGIAVHGGSGLNYGVIEAFRQLRPDAKELE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SGLL++A+ S + + V KRY+A V G +P ++ V N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHEALRGDGVDKRYMALVRGNWPTAKKSV------N 194
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQYT 306
A +S SG+ + + +GK A T+F + G +IV +P+TGRTHQIRVH QY
Sbjct: 195 APLQKSNLRSGERMVEVSDEGKEALTRFRVLRRFGEFATIVEAKPVTGRTHQIRVHAQYA 254
Query: 307 GYPIANDMLY 316
G+ IA D Y
Sbjct: 255 GHCIAGDTKY 264
>gi|404329198|ref|ZP_10969646.1| pseudouridylate synthase [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 308
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 125/252 (49%), Gaps = 25/252 (9%)
Query: 75 NRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHE 134
++WA DLF +E + R +K G Q++ + + SY V++ K + L E
Sbjct: 20 DKWAS----DLFPDESRSR----LQQLIKNGEFQINGKKIRPSYRVQTGDKATLVLPAPE 71
Query: 135 PPVM---AWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAP----L 186
P + A + I+ ++ DVL V KP + VHP + T+V +L DL+ L
Sbjct: 72 PAAVVPEAIPLDIVYEDHDVLVVNKPRGMVVHPSPGHMSGTLVNALLHHCTDLSGINGVL 131
Query: 187 FP--VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI 244
P VHR+D+ SGLL++A+ S Q++ ++Y+A V+GV E E ++D I
Sbjct: 132 RPGIVHRIDKDTSGLLMVAKTDSAHRSLAAQLKDKSTKRQYLAIVHGVIAENEGIIDAPI 191
Query: 245 NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
+A + A + D K A T F + +++V C TGRTHQIRVH+
Sbjct: 192 GRDARDRKKMAVTADH-------SKQAVTHFKVLERFPRYTLVACRLETGRTHQIRVHMA 244
Query: 305 YTGYPIANDMLY 316
Y G+P+A D Y
Sbjct: 245 YIGHPLAGDPKY 256
>gi|417768901|ref|ZP_12416826.1| RNA pseudouridine synthase [Leptospira interrogans serovar Pomona
str. Pomona]
gi|418682230|ref|ZP_13243450.1| RNA pseudouridine synthase [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|400326240|gb|EJO78509.1| RNA pseudouridine synthase [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|409949210|gb|EKN99189.1| RNA pseudouridine synthase [Leptospira interrogans serovar Pomona
str. Pomona]
gi|455668656|gb|EMF33849.1| RNA pseudouridine synthase [Leptospira interrogans serovar Pomona
str. Fox 32256]
Length = 356
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 132/306 (43%), Gaps = 56/306 (18%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKIS-HFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVH 163
GRI + + V ++K IS H + + EPPV D IL ++ + V KP +P+H
Sbjct: 51 GRILISSKTVKPGVSLKEGDLISYHPIQKEEPPVRN-DYKILYEDEFFVAVDKPGDLPIH 109
Query: 164 PCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIK 223
P G YRK ++ L+ LF VHRLDR SG+++ A+N+ A + + G + K
Sbjct: 110 PAGIYRKGNLLTFLKESGKFKDLFTVHRLDRETSGVILFAKNSEIASILSKSFSLGNIQK 169
Query: 224 RYIARVNGVFPEGEQ------------------VVDVNINYNASAGR-----STAESGDS 260
YI +V G FP+ + V + N+ + S E +
Sbjct: 170 YYITKVYGNFPKRKSAYGILKPDLSSKIRKKRTFVPLKFNFLKRNKKYLFENSFIEKQEE 229
Query: 261 LGDTPLK----GKAACTKFTRISTNGT-----------HSIVLCEPITGRTHQIRVHLQY 305
+ T + K +KF ++ +S +LC+PITGR HQIR L
Sbjct: 230 ISLTYFQKIEYDKGRESKFKNVNNEKIKSVFLDQEKDCYSFLLCKPITGRMHQIRATLFS 289
Query: 306 TGYPIANDMLY------LCEHV-------THREGMSADRAAAYSHHSPPPVSSDKSESSS 352
G+P+ D LY E + T R GM +Y+ PV++ K + ++
Sbjct: 290 LGFPLFGDKLYGKDEKVFLEFIEGKNPDLTTRLGMKRQALHSYAVCLNHPVTNQKMKITA 349
Query: 353 ---EDF 355
EDF
Sbjct: 350 PIPEDF 355
>gi|261414458|ref|YP_003248141.1| pseudouridine synthase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385789449|ref|YP_005820572.1| putative pseudouridine synthase, RluD family [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261370914|gb|ACX73659.1| pseudouridine synthase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302326709|gb|ADL25910.1| putative pseudouridine synthase, RluD family [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 321
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 114/255 (44%), Gaps = 14/255 (5%)
Query: 69 FISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISH 128
F S V+ + G+ ++D + F + ++ + G + ++ V K+ +
Sbjct: 10 FESEVRLEYEGRLLLDSLCDRFTYHSREDWIDRLTRGLVTINGATANVETVAHRGDKVVY 69
Query: 129 FLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP 188
+ + P + D + ++ + + V KP VPVH G+ NT I++ E D P
Sbjct: 70 HVENYSEPEVPTDFETVFEDDEFILVAKPAGVPVHHTGRIFYNTFAAIIRREFDSETATP 129
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNA 248
+HRLDR GL++ AR A F++ ++ + K Y+A V G FPEGE + +
Sbjct: 130 MHRLDRDTGGLILFARYGETAARFQKNLDRILLRKFYLAVVRGKFPEGEVECHMPL---- 185
Query: 249 SAGRSTAESGDSLGDTPLKGKAAC-TKFTRI------STNGTHSIVLCEPITGRTHQIRV 301
R E L +G C T+F + S+V E ITGR HQIR
Sbjct: 186 ---REDPEDPIRLRMHHREGGKECFTRFKLVRHLDCPEIAPELSLVEAELITGRKHQIRA 242
Query: 302 HLQYTGYPIANDMLY 316
HL GYPI D LY
Sbjct: 243 HLAEMGYPIVGDRLY 257
>gi|104774018|ref|YP_618998.1| pseudouridylate synthase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103423099|emb|CAI97824.1| Pseudouridylate synthase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 303
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 19/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD---VSILQKEPDVLTVCKPP 158
V+ G I V+ + VSY V+ I + EP + + + I+ ++ DV+ V KP
Sbjct: 36 VQAGEILVNGKKSKVSYKVQKDDLIQVIVLPLEPLKLEAENIPLDIVYEDKDVIVVNKPQ 95
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + +T+V +L DLA P VHR+D+ SGLL++A+NA+ +
Sbjct: 96 GMVVHPAAGHPSHTLVNALLYHTRDLADSPEGFRPGIVHRIDKDTSGLLMVAKNAAARES 155
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q+ A ++Y+A V+G F E E +D I N + A KGK+A
Sbjct: 156 LEKQLAAKSNKRQYLAIVHGNFAE-EGTIDAPIGRNPKDRKQMA--------VVEKGKSA 206
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + +S+V C+ TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 207 VTHFKVLEQYQGYSLVECQLETGRTHQIRVHMAYIGHPLAGDPLY 251
>gi|386344155|ref|YP_006040319.1| pseudouridine synthase [Streptococcus thermophilus JIM 8232]
gi|387909307|ref|YP_006339613.1| pseudouridine synthase [Streptococcus thermophilus MN-ZLW-002]
gi|339277616|emb|CCC19364.1| pseudouridine synthase [Streptococcus thermophilus JIM 8232]
gi|387574242|gb|AFJ82948.1| pseudouridine synthase [Streptococcus thermophilus MN-ZLW-002]
Length = 296
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 22/228 (9%)
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVC 155
A+K G + V+ + Y VK I++ L E V+ + + I+ ++ DV V
Sbjct: 30 AIKAGTVLVNGKSAKAKYVVKEGDVITYVLPEEE--VLEYKAEDIPLDIIYEDADVAVVN 87
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 88 KPQGIVVHPSAGHTSGTLVNALMYHVKDLSSINGVVRPGIVHRIDKDTSGLLMIAKNDKA 147
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
+ +++ K +++Y+A V+G P V++ A GRS + KG
Sbjct: 148 HNALAAELKDKKSLRKYVAIVHGNLPNDRGVIE------APIGRSDKDRKKQA--VTAKG 199
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T+FT + G +++V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 200 KPAVTRFTVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|55822493|ref|YP_140934.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus CNRZ1066]
gi|55738478|gb|AAV62119.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus CNRZ1066]
Length = 292
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 22/228 (9%)
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVC 155
A+K G + V+ + Y VK I++ L E V+ + + I+ ++ DV V
Sbjct: 30 AIKAGTVLVNGKSAKAKYVVKEGDVITYVLPEEE--VLEYKAEDIPLDIIYEDADVAVVN 87
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 88 KPQGMVVHPSAGHTSGTLVNALMYHVKDLSSINGVVRPGIVHRIDKDTSGLLMIAKNDKA 147
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
+ +++ K +++Y+A V+G P V++ A GRS + KG
Sbjct: 148 HNALAAELKDKKSLRKYVAIVHGNLPNDRGVIE------APIGRSDKDRKKQA--VTAKG 199
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T+FT + G +++V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 200 KPAVTRFTVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|55820603|ref|YP_139045.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus LMG 18311]
gi|386086213|ref|YP_006002087.1| Pseudouridine synthase [Streptococcus thermophilus ND03]
gi|55736588|gb|AAV60230.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus LMG 18311]
gi|312277926|gb|ADQ62583.1| Pseudouridine synthase [Streptococcus thermophilus ND03]
Length = 296
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 22/228 (9%)
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVC 155
A+K G + V+ + Y VK I++ L E V+ + + I+ ++ DV V
Sbjct: 30 AIKAGTVLVNGKSAKAKYVVKEGDVITYVLPEEE--VLEYKAEDIPLDIIYEDADVAVVN 87
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 88 KPQGMVVHPSAGHTSGTLVNALMYHVKDLSSINGVVRPGIVHRIDKDTSGLLMIAKNDKA 147
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
+ +++ K +++Y+A V+G P V++ A GRS + KG
Sbjct: 148 HNALAAELKDKKSLRKYVAIVHGNLPNDRGVIE------APIGRSDKDRKKQA--VTAKG 199
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T+FT + G +++V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 200 KPAVTRFTVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|312864274|ref|ZP_07724508.1| pseudouridine synthase, RluA family [Streptococcus vestibularis
F0396]
gi|322517241|ref|ZP_08070120.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
vestibularis ATCC 49124]
gi|311100275|gb|EFQ58484.1| pseudouridine synthase, RluA family [Streptococcus vestibularis
F0396]
gi|322124147|gb|EFX95681.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
vestibularis ATCC 49124]
Length = 296
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 22/228 (9%)
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVC 155
A+K G + V+ + Y VK I++ L E V+ + + I+ ++ DV V
Sbjct: 30 AIKAGTVLVNGKSAKAKYAVKEGDVITYVLPEEE--VLEYKAEDIPLDIIYEDADVAVVN 87
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 88 KPQGMVVHPSAGHTSGTLVNALMYHVKDLSSINGVVRPGIVHRIDKDTSGLLMIAKNDKA 147
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
+ +++ K +++Y+A V+G P V++ I GRS + KG
Sbjct: 148 HNALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPI------GRSDKDRKKQA--VTAKG 199
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T+FT + G +++V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 200 KPAVTRFTVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|187928001|ref|YP_001898488.1| pseudouridine synthase [Ralstonia pickettii 12J]
gi|187724891|gb|ACD26056.1| pseudouridine synthase, RluA family [Ralstonia pickettii 12J]
Length = 344
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 116/244 (47%), Gaps = 12/244 (4%)
Query: 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRHE 134
G+ I + KG P + ++ G ++V++ + Y +K + + E
Sbjct: 40 GQRIDNFLMRVAKGVPKSHIYRILRSGEVRVNKGRIDAEYRLKLGDLVRIPPLRIAQQVE 99
Query: 135 P--PVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRL 192
PV A + +IL ++ +L + KP V VH + + Q+ D L VHRL
Sbjct: 100 AARPVPAAEFTILHEDTHLLVIDKPAGVAVHGGSGVAFGVIEQLRQSRPDAKFLELVHRL 159
Query: 193 DRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGR 252
DR SG+L+LA+ S +QI G++ KRY A V GV+P Q + ++ +
Sbjct: 160 DRETSGVLLLAKKRSALVALHEQIREGQLDKRYFAAVKGVWPHKRQHIKSPLH------K 213
Query: 253 STAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAN 312
T G+ G+A+ T F ++ G ++++ E TGRTHQIRVHL + G+PI
Sbjct: 214 YTTPEGERRVRVQADGQASHTIFNKVGVFGPYTLLEAELKTGRTHQIRVHLAHAGFPILG 273
Query: 313 DMLY 316
D Y
Sbjct: 274 DDKY 277
>gi|385262518|ref|ZP_10040622.1| pseudouridine synthase, RluA family [Streptococcus sp. SK643]
gi|385190419|gb|EIF37866.1| pseudouridine synthase, RluA family [Streptococcus sp. SK643]
Length = 296
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTVK I++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKLGQVLVNGQVKKAKYTVKEDDIITY--HVPEPEVLEYVAEEIPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|116629656|ref|YP_814828.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus gasseri
ATCC 33323]
gi|238854259|ref|ZP_04644603.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
gasseri 202-4]
gi|311110701|ref|ZP_07712098.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
gasseri MV-22]
gi|420147157|ref|ZP_14654433.1| Pseudouridine synthase [Lactobacillus gasseri CECT 5714]
gi|116095238|gb|ABJ60390.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
gasseri ATCC 33323]
gi|238833070|gb|EEQ25363.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
gasseri 202-4]
gi|311065855|gb|EFQ46195.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
gasseri MV-22]
gi|398401158|gb|EJN54660.1| Pseudouridine synthase [Lactobacillus gasseri CECT 5714]
Length = 304
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 125/243 (51%), Gaps = 20/243 (8%)
Query: 85 LFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA---WD 141
+ AE+ K V I V+ + VSY V++ I + +P + +
Sbjct: 19 VIAEKLKDLSRTKIKELVNDKNILVNHKAEKVSYKVQAGDSIDITVPPAKPLSLEAQNLN 78
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDR 194
+ I+ ++ DV+ V KP + VHP + +T+V G+L H+LA P VHR+D+
Sbjct: 79 LDIVYEDADVIVVNKPQGMVVHPSAGHPDHTLVNGLLYHTHELADSPEGFRPGIVHRIDK 138
Query: 195 LVSGLLILARNASKADLFRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRS 253
SGLL++A+N + +Q+ A K+ KR Y+A V+G F V+D I N + +
Sbjct: 139 DTSGLLMVAKNDKARESLEKQL-AEKINKREYLAIVHGNFETKNGVIDAPIGRNPNNRKQ 197
Query: 254 TAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
A + KGKAA T FT + +S+V C TGRTHQIRVH++Y G+P+A D
Sbjct: 198 MAVNP--------KGKAAVTHFTVLEQFKDYSLVKCILETGRTHQIRVHMKYIGHPLAGD 249
Query: 314 MLY 316
LY
Sbjct: 250 PLY 252
>gi|449667313|ref|XP_002168193.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like, partial [Hydra magnipapillata]
Length = 135
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 70/108 (64%)
Query: 130 LHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPV 189
+HRHEPPV+ ++ +Q +V+ + KP S+PVHPCG++R NT+V IL ++ L L +
Sbjct: 21 IHRHEPPVIHEEIEFIQNNEEVVVINKPASIPVHPCGRFRHNTIVFILGKDYGLYNLHTI 80
Query: 190 HRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237
HR+DRL SG+L+ A+ + KA + VIK Y+ARV G FP +
Sbjct: 81 HRIDRLTSGVLMFAKTSKKARELEGLVRGRLVIKEYLARVIGDFPRTQ 128
>gi|307709119|ref|ZP_07645578.1| pseudouridine synthase, RluA family protein [Streptococcus mitis
SK564]
gi|307620065|gb|EFN99182.1| pseudouridine synthase, RluA family protein [Streptococcus mitis
SK564]
Length = 295
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V++++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNDQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDIPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|228478264|ref|ZP_04062872.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius SK126]
gi|340399333|ref|YP_004728358.1| pseudouridine synthase [Streptococcus salivarius CCHSS3]
gi|421451886|ref|ZP_15901247.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius K12]
gi|228249943|gb|EEK09213.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius SK126]
gi|338743326|emb|CCB93834.1| pseudouridine synthase [Streptococcus salivarius CCHSS3]
gi|400182317|gb|EJO16579.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius K12]
Length = 296
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 22/228 (9%)
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVC 155
A+K G + V+ + Y VK I++ L E V+ + + I+ ++ DV V
Sbjct: 30 AIKAGTVLVNGKSAKAKYAVKEGDVITYELPEEE--VLEYKAEDIPLDIIYEDADVAVVN 87
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 88 KPQGMVVHPSAGHTSGTLVNALMYHVKDLSSINGVVRPGIVHRIDKDTSGLLMIAKNDKA 147
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
+ +++ K +++Y+A V+G P V++ I GRS + KG
Sbjct: 148 HNALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPI------GRSDKDRKKQA--VTAKG 199
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T+FT + G +++V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 200 KPAVTRFTVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|418018315|ref|ZP_12657871.1| pseudouridine synthase [Streptococcus salivarius M18]
gi|345527164|gb|EGX30475.1| pseudouridine synthase [Streptococcus salivarius M18]
Length = 296
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 22/228 (9%)
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVC 155
A+K G + V+ + Y VK I++ L E V+ + + I+ ++ DV V
Sbjct: 30 AIKAGTVLVNGKSAKAKYAVKEGDVITYELPEEE--VLEYKAEDIPLDIIYEDADVAVVN 87
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 88 KPQGMVVHPSAGHTSGTLVNALMYHVKDLSSINGVVRPGIVHRIDKDTSGLLMIAKNDKA 147
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
+ +++ K +++Y+A V+G P V++ I GRS + KG
Sbjct: 148 HNALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPI------GRSDKDRKKQA--VTAKG 199
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T+FT + G +++V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 200 KPAVTRFTVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|387783586|ref|YP_006069669.1| pseudouridine synthase [Streptococcus salivarius JIM8777]
gi|338744468|emb|CCB94834.1| pseudouridine synthase [Streptococcus salivarius JIM8777]
Length = 296
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 22/228 (9%)
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVC 155
A+K G + V+ + Y VK I++ L E V+ + + I+ ++ DV V
Sbjct: 30 AIKAGTVLVNGKSAKAKYAVKEGDVITYELPEEE--VLEYKAEDIPLDIIYEDADVAVVN 87
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 88 KPQGMVVHPSAGHTSGTLVNALMYHVKDLSSINGVVRPGIVHRIDKDTSGLLMIAKNDKA 147
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
+ +++ K +++Y+A V+G P V++ I GRS + KG
Sbjct: 148 HNALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPI------GRSDKDRKKQA--VTAKG 199
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T+FT + G +++V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 200 KPAVTRFTVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|322372447|ref|ZP_08046983.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
C150]
gi|321277489|gb|EFX54558.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
C150]
Length = 297
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 22/228 (9%)
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVC 155
A+K G + V+ + Y VK I++ L E V+ + + I+ ++ DV V
Sbjct: 30 AIKAGTVLVNGKSAKAKYAVKEGDVITYELPEEE--VLEYKAEDIPLDIIYEDADVAVVN 87
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 88 KPQGMVVHPSAGHTSGTLVNALMYHVKDLSSINGVVRPGIVHRIDKDTSGLLMVAKNDKA 147
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
+ +++ K +++Y+A V+G P V++ I GRS + KG
Sbjct: 148 HNALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPI------GRSDKDRKKQA--VTAKG 199
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T+FT + G +++V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 200 KPAVTRFTVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|241662583|ref|YP_002980943.1| pseudouridine synthase [Ralstonia pickettii 12D]
gi|240864610|gb|ACS62271.1| pseudouridine synthase, RluA family [Ralstonia pickettii 12D]
Length = 344
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 115/244 (47%), Gaps = 12/244 (4%)
Query: 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRHE 134
G+ I + KG P + ++ G ++V++ + Y +K + + E
Sbjct: 40 GQRIDNFLMRVAKGVPKSHIYRILRSGEVRVNKGRIDAEYRLKLGDLVRIPPLRIAQQVE 99
Query: 135 P--PVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRL 192
PV A + +IL ++ +L + KP V VH + + Q+ D L VHRL
Sbjct: 100 AARPVPAAEFAILHEDTHLLVIDKPAGVAVHGGSGVAFGVIEQLRQSRPDAKFLELVHRL 159
Query: 193 DRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGR 252
DR SG+L+LA+ S +QI G++ KRY A V GV+P Q + + +
Sbjct: 160 DRETSGVLLLAKKRSALVALHEQIREGQLDKRYFAAVKGVWPHKRQHIKSPLY------K 213
Query: 253 STAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAN 312
T G+ G+A+ T F ++ G ++++ E TGRTHQIRVHL + G+PI
Sbjct: 214 YTTPEGERRVRVQADGQASHTIFNKVGVFGPYTLLEAELKTGRTHQIRVHLAHAGFPILG 273
Query: 313 DMLY 316
D Y
Sbjct: 274 DDKY 277
>gi|309781165|ref|ZP_07675902.1| ribosomal large subunit pseudouridine synthase C [Ralstonia sp.
5_7_47FAA]
gi|404393922|ref|ZP_10985726.1| RluA family pseudouridine synthase [Ralstonia sp. 5_2_56FAA]
gi|308919986|gb|EFP65646.1| ribosomal large subunit pseudouridine synthase C [Ralstonia sp.
5_7_47FAA]
gi|348615732|gb|EGY65243.1| RluA family pseudouridine synthase [Ralstonia sp. 5_2_56FAA]
Length = 344
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 115/244 (47%), Gaps = 12/244 (4%)
Query: 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRHE 134
G+ I + KG P + ++ G ++V++ + Y +K + + E
Sbjct: 40 GQRIDNFLMRVAKGVPKSHIYRILRSGEVRVNKGRIDAEYRLKLGDLVRIPPLRIAQQVE 99
Query: 135 P--PVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRL 192
PV A + +IL ++ +L + KP V VH + + Q+ D L VHRL
Sbjct: 100 AARPVPAAEFTILHEDTHLLVIDKPAGVAVHGGSGVAFGVIEQLRQSRPDAKFLELVHRL 159
Query: 193 DRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGR 252
DR SG+L+LA+ S +QI G++ KRY A V GV+P Q + + +
Sbjct: 160 DRETSGVLLLAKKRSALVALHEQIREGQLDKRYFAAVKGVWPHKRQHIKSPLY------K 213
Query: 253 STAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAN 312
T G+ G+A+ T F ++ G ++++ E TGRTHQIRVHL + G+PI
Sbjct: 214 YTTPEGERRVRVQADGQASHTIFNKVGVFGPYTLLEAELKTGRTHQIRVHLAHAGFPILG 273
Query: 313 DMLY 316
D Y
Sbjct: 274 DDKY 277
>gi|332522697|ref|ZP_08398949.1| pseudouridine synthase, RluA family [Streptococcus porcinus str.
Jelinkova 176]
gi|332313961|gb|EGJ26946.1| pseudouridine synthase, RluA family [Streptococcus porcinus str.
Jelinkova 176]
Length = 299
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ ++V Y+VKS +I++ L E ++ + + I+ ++ D+ V K
Sbjct: 31 IKKGLVLVNGQVVKAKYSVKSGDEITYQLPEEE--ILDYKAENLPIDIIYEDSDLAIVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
+ VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 89 AQGMVVHPSAGHSSGTLVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKNDKAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ ++++A K +++Y+A V+G P +++ A GRS E +KGK
Sbjct: 149 QVLAEELKAKKSLRKYLAIVHGNLPNDRGMIE------APIGRS--EKDRKKQSVTVKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+FT + G ++++ TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 201 DAVTRFTVLERFGDYTLLELSLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|445373337|ref|ZP_21426283.1| Pseudouridine synthase [Streptococcus thermophilus MTCC 5460]
gi|445388250|ref|ZP_21428000.1| Pseudouridine synthase [Streptococcus thermophilus MTCC 5461]
gi|444750805|gb|ELW75594.1| Pseudouridine synthase [Streptococcus thermophilus MTCC 5461]
gi|444750959|gb|ELW75739.1| Pseudouridine synthase [Streptococcus thermophilus MTCC 5460]
Length = 296
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 22/228 (9%)
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVC 155
A+K G + V+ + Y VK I++ E V+ + + I+ ++ DV V
Sbjct: 30 AIKAGTVLVNGKSAKAKYVVKEGDVITYVFPEEE--VLEYKAEDIPLDIIYEDTDVAVVN 87
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 88 KPQGMVVHPSAGHTSGTLVNALMYHVKDLSSINGVVRPGIVHRIDKDTSGLLMIAKNDKA 147
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
+ +++ K +++Y+A V+G P V++ A GRS + KG
Sbjct: 148 HNALAAELKDKKSLRKYVAIVHGNLPNDRGVIE------APIGRSDKDRKKQA--VTAKG 199
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T+FT + G +++V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 200 KPAVTRFTVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|52080148|ref|YP_078939.1| pseudouridine synthase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319646073|ref|ZP_08000303.1| pseudouridine synthase [Bacillus sp. BT1B_CT2]
gi|404489036|ref|YP_006713142.1| RNA-pseudouridine synthase YlyB [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|423682090|ref|ZP_17656929.1| pseudouridine synthetase [Bacillus licheniformis WX-02]
gi|52003359|gb|AAU23301.1| Pseudouridine synthase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52348027|gb|AAU40661.1| putative RNA-pseudouridine synthase YlyB [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|317391823|gb|EFV72620.1| pseudouridine synthase [Bacillus sp. BT1B_CT2]
gi|383438864|gb|EID46639.1| pseudouridine synthetase [Bacillus licheniformis WX-02]
Length = 304
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 119/253 (47%), Gaps = 32/253 (12%)
Query: 88 EEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHE 134
EE KG D Y++AV K R+ V+ V +Y V+ +S + E
Sbjct: 10 EEHKGERIDKYLTAVEADWSRTQVQQWIKEDRVLVNGNAVKANYKVQEGDAVSVQVPEPE 69
Query: 135 P-PVMA--WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHD--------L 183
P V A D+ I ++ DVL V KP + VHP + T+V L A D +
Sbjct: 70 PLDVTAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCDDLSGINGVM 129
Query: 184 APLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVN 243
P VHR+D+ SGLL++A+N + Q+ V ++Y A V+GV P +D
Sbjct: 130 RPGI-VHRIDKDTSGLLMVAKNDMAHESLVNQLVNKTVTRKYTALVHGVIPHDHGTID-- 186
Query: 244 INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHL 303
A GR + S+ T GK A T F I ++V C+ TGRTHQIRVH+
Sbjct: 187 ----APIGRDKKDR-QSMTVTRENGKHAVTHFEVIERFDDFTVVECQLETGRTHQIRVHM 241
Query: 304 QYTGYPIANDMLY 316
+Y G+P+A D Y
Sbjct: 242 KYIGFPLAGDPKY 254
>gi|312143925|ref|YP_003995371.1| RluA family pseudouridine synthase [Halanaerobium hydrogeniformans]
gi|311904576|gb|ADQ15017.1| pseudouridine synthase, RluA family [Halanaerobium
hydrogeniformans]
Length = 304
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 122/259 (47%), Gaps = 17/259 (6%)
Query: 68 EFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS 127
E+ V AGK + A +F +Y ++ +I+V+ V SY +K + +I
Sbjct: 3 EYNLKVDKSEAGKRVDKFLASQFDDFSRNYIQKLIEDSKIKVNSNPVQNSYLIKEADEIK 62
Query: 128 HFLHR-HEPPVMAWDV--SILQKEPDVLTVCKPPSVPVHPC-GQYRKNTVVGILQAEHDL 183
+ + + + A D+ I+ ++ D++ + K + VHP G Y V +L +DL
Sbjct: 63 VIIDKAKKSSIKAVDIELDIIYEDQDIIIINKDADMVVHPAPGHYDDTIVNALLAYTNDL 122
Query: 184 APL------FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237
+ + VHRLD+ SGLL++A+N +Q + +V K Y+A + G+ P
Sbjct: 123 SAINGVKRPGIVHRLDKDTSGLLLVAKNDKSHKELSRQFKKREVDKYYLALLKGILPYKT 182
Query: 238 QVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTH 297
+D I + + + A K K A ++F + + H++V + TGRTH
Sbjct: 183 GKIDAPIGRHPNQRKKMAVR-------KRKSKKAVSRFKILESFKNHTLVEVKIETGRTH 235
Query: 298 QIRVHLQYTGYPIANDMLY 316
QIRVH Y GYP+ D Y
Sbjct: 236 QIRVHFAYLGYPVVGDQKY 254
>gi|15902874|ref|NP_358424.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae R6]
gi|116515398|ref|YP_816303.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae D39]
gi|148988365|ref|ZP_01819812.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP6-BS73]
gi|168482999|ref|ZP_02707951.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae CDC1873-00]
gi|387626289|ref|YP_006062462.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
INV104]
gi|417696119|ref|ZP_12345298.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47368]
gi|418091674|ref|ZP_12728816.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44452]
gi|418107319|ref|ZP_12744357.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41410]
gi|418109895|ref|ZP_12746920.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA49447]
gi|418148354|ref|ZP_12785119.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13856]
gi|418161981|ref|ZP_12798668.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17328]
gi|418169030|ref|ZP_12805674.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19077]
gi|418175745|ref|ZP_12812342.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41437]
gi|418218673|ref|ZP_12845340.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP127]
gi|418220982|ref|ZP_12847636.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47751]
gi|418238506|ref|ZP_12865061.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|419422829|ref|ZP_13963045.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA43264]
gi|419459773|ref|ZP_13999706.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA02270]
gi|419462091|ref|ZP_14002001.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA02714]
gi|419488867|ref|ZP_14028617.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44386]
gi|419495244|ref|ZP_14034962.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47461]
gi|419525679|ref|ZP_14065243.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA14373]
gi|421231698|ref|ZP_15688343.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2080076]
gi|421265954|ref|ZP_15716837.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SPAR27]
gi|421272583|ref|ZP_15723427.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SPAR55]
gi|421303146|ref|ZP_15753810.1| pseudouridine synthase [Streptococcus pneumoniae GA17484]
gi|421307199|ref|ZP_15757844.1| pseudouridine synthase [Streptococcus pneumoniae GA60132]
gi|444382206|ref|ZP_21180410.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS8106]
gi|444384766|ref|ZP_21182857.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS8203]
gi|15458431|gb|AAK99634.1| 23S rRNA pseudouridine synthase (supresses ftsH(ts) mutants)
[Streptococcus pneumoniae R6]
gi|116075974|gb|ABJ53694.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae D39]
gi|147926046|gb|EDK77120.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP6-BS73]
gi|172043419|gb|EDT51465.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae CDC1873-00]
gi|301794072|emb|CBW36476.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
INV104]
gi|332201394|gb|EGJ15464.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47368]
gi|353763774|gb|EHD44324.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44452]
gi|353779502|gb|EHD59966.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41410]
gi|353782807|gb|EHD63237.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA49447]
gi|353813029|gb|EHD93262.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13856]
gi|353828364|gb|EHE08504.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17328]
gi|353834872|gb|EHE14968.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19077]
gi|353842313|gb|EHE22360.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41437]
gi|353875328|gb|EHE55180.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP127]
gi|353875905|gb|EHE55755.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47751]
gi|353894256|gb|EHE73998.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|379532799|gb|EHY98023.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA02270]
gi|379532937|gb|EHY98160.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA02714]
gi|379559153|gb|EHZ24183.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA14373]
gi|379587760|gb|EHZ52607.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44386]
gi|379588287|gb|EHZ53132.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA43264]
gi|379595326|gb|EHZ60134.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47461]
gi|395596188|gb|EJG56410.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2080076]
gi|395868690|gb|EJG79807.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SPAR27]
gi|395875692|gb|EJG86770.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SPAR55]
gi|395901768|gb|EJH12704.1| pseudouridine synthase [Streptococcus pneumoniae GA17484]
gi|395908300|gb|EJH19182.1| pseudouridine synthase [Streptococcus pneumoniae GA60132]
gi|444251526|gb|ELU57995.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS8203]
gi|444253166|gb|ELU59625.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS8106]
Length = 295
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LVLAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|421766135|ref|ZP_16202913.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
garvieae DCC43]
gi|407625505|gb|EKF52209.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
garvieae DCC43]
Length = 302
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 114/230 (49%), Gaps = 28/230 (12%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTV 154
V+ G++ VD E Y VK+ + +++ L P V D+ I+ ++ DV +
Sbjct: 34 VREGKVSVDGETKKAKYKVKAGESVTYEL----PEVEVLDIQAEDIPLDIVYEDADVAVI 89
Query: 155 CKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V I+ DL+ + VHR+D+ SGLL++A+N
Sbjct: 90 NKPQGMVVHPSAGHASGTLVNAIMYHIQDLSSINGVIRPGIVHRIDKDTSGLLMIAKNDR 149
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAE-SGDSLGDTPL 266
+ Q++A +RYIA V+G P + ++ I N + A SG
Sbjct: 150 AHESLAAQLKAKTNKRRYIALVHGEIPNEKGTIEAPIGRNPKERKKQAVVSG-------- 201
Query: 267 KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + ++++ E TGRTHQIRVHL Y G+PIA D LY
Sbjct: 202 -GKPAKTHFTVLERFAGYTLLSLELETGRTHQIRVHLAYIGFPIAGDPLY 250
>gi|418182557|ref|ZP_12819118.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA43380]
gi|353850794|gb|EHE30798.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA43380]
Length = 295
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDIVTY--HVPEPEVLEYVAEDLSLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|422878953|ref|ZP_16925419.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1059]
gi|422928799|ref|ZP_16961741.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis ATCC 29667]
gi|422931773|ref|ZP_16964704.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK340]
gi|332366655|gb|EGJ44398.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1059]
gi|339616067|gb|EGQ20725.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis ATCC 29667]
gi|339619505|gb|EGQ24084.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK340]
Length = 298
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K GRI V+ ++ Y VK IS+ L EP V+ + + I+ ++ DV + K
Sbjct: 33 IKDGRILVNGQVKKAKYAVKEGDVISYELP--EPEVVEYVAEDIPLEIVYQDEDVAVINK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHIQDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++A K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 VALADELKAKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 PALTRFQVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|270292963|ref|ZP_06199174.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
M143]
gi|270278942|gb|EFA24788.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
M143]
Length = 299
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGQVKKAKYTVQEGDIVTY--HVPEPEVLEYVAEDIPLDIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|419767492|ref|ZP_14293645.1| pseudouridine synthase, RluA family [Streptococcus mitis SK579]
gi|383353035|gb|EID30662.1| pseudouridine synthase, RluA family [Streptococcus mitis SK579]
Length = 296
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAENLPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFYVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|357639813|ref|ZP_09137686.1| pseudouridine synthase, RluA family [Streptococcus urinalis
2285-97]
gi|418416276|ref|ZP_12989475.1| RluA family pseudouridine synthase [Streptococcus urinalis
FB127-CNA-2]
gi|357588267|gb|EHJ57675.1| pseudouridine synthase, RluA family [Streptococcus urinalis
2285-97]
gi|410874094|gb|EKS22025.1| RluA family pseudouridine synthase [Streptococcus urinalis
FB127-CNA-2]
Length = 300
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 111/225 (49%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP---PVMAWDVSILQKEPDVLTVCKPP 158
+K G++ VD ++ Y +Q + L E + ++ ++ DV + KP
Sbjct: 31 IKKGQVLVDGQLKKAKYITSKNQIVEFELPEEESLDYEAEEMPLELIYEDSDVAVINKPQ 90
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP Y T+V +L DL+ + VHR+D+ SGLL++A+N
Sbjct: 91 GMVVHPSAGYSSGTLVNALLFHIKDLSSINGVIRPGIVHRIDKDTSGLLMIAKNNEAHHA 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q+++A K +++YIA V+G P V++ I + + A + KGK A
Sbjct: 151 LAQELKAKKSLRKYIAIVHGNLPNDLGVIEAPIGRSEKDRKKQAVTS--------KGKDA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+F + G +++V TGRTHQIRVH+ Y G+PIA D LY
Sbjct: 203 LTRFKVLERFGDYTLVELSLETGRTHQIRVHMAYIGHPIAGDPLY 247
>gi|419707197|ref|ZP_14234692.1| Pseudouridine synthase [Streptococcus salivarius PS4]
gi|383283078|gb|EIC81047.1| Pseudouridine synthase [Streptococcus salivarius PS4]
Length = 297
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 18/226 (7%)
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMAWDV--SILQKEPDVLTVCKP 157
A+K G + V+ + Y VK I++ L E A D+ I+ ++ DV V KP
Sbjct: 30 AIKAGTVLVNGKSSKAKYAVKEGDVITYELPEEEVLDYKAEDIPLDIIYEDADVAVVNKP 89
Query: 158 PSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKAD 210
+ VHP + T+V L DL+ + VHR+D+ SGLL++A+N +
Sbjct: 90 QGMVVHPSAGHTSGTLVNALMYHVKDLSSINGVVRPGIVHRIDKDTSGLLMVAKNDKAHN 149
Query: 211 LFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKA 270
+++ K +++Y+A V+G P V++ I GRS + KGK
Sbjct: 150 ALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPI------GRSDKDRKKQA--VTAKGKP 201
Query: 271 ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+FT + G +++V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 202 AVTRFTVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|300361720|ref|ZP_07057897.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
gasseri JV-V03]
gi|300354339|gb|EFJ70210.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
gasseri JV-V03]
Length = 304
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 124/243 (51%), Gaps = 20/243 (8%)
Query: 85 LFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA---WD 141
+ AE+ K V I V+ + VSY V++ I + +P + +
Sbjct: 19 VIAEKIKDLSRTKIKELVNDKNILVNNKAEKVSYKVQAGDLIDITVPPAKPLSLEAQNLN 78
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDR 194
+ I+ ++ DV+ V KP + VHP + +T+V G+L H LA P VHR+D+
Sbjct: 79 LDIVYEDADVIVVNKPQGMVVHPSAGHPDHTLVNGLLYHTHKLADSPEGFRPGIVHRIDK 138
Query: 195 LVSGLLILARNASKADLFRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRS 253
SGLL++A+N + +Q+ A K+ KR Y+A V+G F V+D I N + +
Sbjct: 139 DTSGLLMVAKNDKARESLEKQL-AEKINKREYLAIVHGNFETKNGVIDAPIGRNPNNRKQ 197
Query: 254 TAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
A + KGKAA T FT + +S+V C TGRTHQIRVH++Y G+P+A D
Sbjct: 198 MAVNP--------KGKAAVTHFTVLEQFKDYSLVKCVLETGRTHQIRVHMKYIGHPLAGD 249
Query: 314 MLY 316
LY
Sbjct: 250 PLY 252
>gi|119478176|ref|ZP_01618232.1| ribosomal large subunit pseudouridine synthase C (pseudouridylate
synthase) (uracil hydrolyase) [marine gamma
proteobacterium HTCC2143]
gi|119448685|gb|EAW29929.1| ribosomal large subunit pseudouridine synthase C (pseudouridylate
synthase) (uracil hydrolyase) [marine gamma
proteobacterium HTCC2143]
Length = 328
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 125/264 (47%), Gaps = 36/264 (13%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHR 132
V + AG+ I + KG P ++ G ++V++ V Y + +
Sbjct: 21 VTDAHAGQRIDNFLLRHLKGVPKSRIYRILRKGEVRVNKSRVKAEYRLCDGDLL------ 74
Query: 133 HEPPVMAWDV----------------SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGI 176
PPV D SIL ++ +L + KP + VH + G+
Sbjct: 75 RIPPVRISDAKPAESVSVSLSRLLSNSILYEDDRLLIINKPSGLAVHGGSGISQ----GL 130
Query: 177 LQAEHDLAP----LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
++A L P L VHRLDR SG +++A+ S +Q+ +GK+ KRY+A V+G
Sbjct: 131 IEALRVLRPEARFLELVHRLDRDTSGCVMIAKKRSMLRHLHEQLRSGKIDKRYLALVSGR 190
Query: 233 FPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPI 292
+P+ +VV N +++ +SG+ + + +GK + T+F+ + ++V +PI
Sbjct: 191 WPQKRRVV------NEPLLKNSLQSGERMVNVAPEGKKSITEFSVVERYAQATLVEAKPI 244
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGRTHQIRVH QY G P+ D Y
Sbjct: 245 TGRTHQIRVHAQYAGCPLLGDDKY 268
>gi|418977644|ref|ZP_13525458.1| pseudouridine synthase, RluA family [Streptococcus mitis SK575]
gi|383349612|gb|EID27541.1| pseudouridine synthase, RluA family [Streptococcus mitis SK575]
Length = 295
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKLGQVLVNGQVKKAKYTVQEGDIVTY--HVPEPEVLEYVAENLLLDIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 TAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|421088762|ref|ZP_15549583.1| RNA pseudouridine synthase [Leptospira kirschneri str. 200802841]
gi|410002743|gb|EKO53259.1| RNA pseudouridine synthase [Leptospira kirschneri str. 200802841]
Length = 367
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 113/258 (43%), Gaps = 47/258 (18%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKIS-HFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVH 163
GRI V + V ++K +S H + + EPPV D IL ++ + V KP +PVH
Sbjct: 55 GRILVSSKTVKPGVSLKEGDLVSYHPIQKEEPPVRN-DYKILYEDEFFVAVDKPGDLPVH 113
Query: 164 PCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIK 223
P G YRK ++ L+ LF +HRLDR SG+++ A+N+ A + G + K
Sbjct: 114 PAGIYRKGNLLTFLKESGKFKDLFTIHRLDRETSGVILFAKNSEIASSLSKSFSLGNIQK 173
Query: 224 RYIARVNGVFPEGEQ---VVDVNINYNASAGR--------------------STAESGDS 260
YI +V G FP+ + ++ +++ R S E +
Sbjct: 174 YYITKVYGDFPKRKSAYGILKPDLSSKIRKKRTFVPLKFDFLKRNKKYLFDNSIMEKQEE 233
Query: 261 LGDTPLKG------KAACTKFTRIS----------------TNGTHSIVLCEPITGRTHQ 298
+ T + + + KF++I HSI+LC PITGR HQ
Sbjct: 234 ISLTYFQKVEFDRRRESKFKFSKIEFQFQNMKNEKMGSVLLNQEDHSILLCRPITGRMHQ 293
Query: 299 IRVHLQYTGYPIANDMLY 316
IR L G+P+ D LY
Sbjct: 294 IRATLFSLGFPLFGDKLY 311
>gi|307706435|ref|ZP_07643244.1| pseudouridine synthase, RluA family protein [Streptococcus mitis
SK321]
gi|307618145|gb|EFN97303.1| pseudouridine synthase, RluA family protein [Streptococcus mitis
SK321]
Length = 295
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HLPEPEVLEYVAENLPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|319947181|ref|ZP_08021415.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
australis ATCC 700641]
gi|417920275|ref|ZP_12563787.1| pseudouridine synthase, RluA family [Streptococcus australis ATCC
700641]
gi|319747229|gb|EFV99488.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
australis ATCC 700641]
gi|342829926|gb|EGU64267.1| pseudouridine synthase, RluA family [Streptococcus australis ATCC
700641]
Length = 296
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFL-HRHEPPVMAWDV--SILQKEPDVLTVCKPP 158
+K G+I V+ ++ YTVK IS+ + E A D+ I+ ++ DV+ V KP
Sbjct: 31 IKEGKILVNGQVKKAKYTVKEGDVISYEVPQMEEVTYEAEDIPLEIVYQDADVVVVNKPQ 90
Query: 159 SVPVHPCGQYRKNTVVGILQAE-HDLA----PLFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V L DL+ L P VHR+D+ SGLL++A+N +
Sbjct: 91 GMVVHPSAGHTSGTLVNALMYHIKDLSGINGELRPGIVHRIDKDTSGLLMVAKNDAAHVA 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+++A K +++Y A V+G P V++ A GRS + KGK A
Sbjct: 151 LADELKAKKSLRKYWAIVHGNLPNDRGVIE------APIGRSDKDRKKQA--VTAKGKPA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 LTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|307704906|ref|ZP_07641797.1| pseudouridine synthase, RluA family protein [Streptococcus mitis
SK597]
gi|307621520|gb|EFO00566.1| pseudouridine synthase, RluA family protein [Streptococcus mitis
SK597]
Length = 295
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ I++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVITY--HVPEPEVLEYVAEDIPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|419779021|ref|ZP_14304902.1| pseudouridine synthase, RluA family [Streptococcus oralis SK10]
gi|383186785|gb|EIC79250.1| pseudouridine synthase, RluA family [Streptococcus oralis SK10]
Length = 299
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ + YTV+ I++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGQAKKAKYTVQEGDIITY--HVPEPEVLEYVAEDIPLDIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYSLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|383937986|ref|ZP_09991215.1| pseudouridine synthase, RluA family [Streptococcus pseudopneumoniae
SK674]
gi|418973487|ref|ZP_13521475.1| pseudouridine synthase, RluA family [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|383348746|gb|EID26704.1| pseudouridine synthase, RluA family [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|383715114|gb|EID71091.1| pseudouridine synthase, RluA family [Streptococcus pseudopneumoniae
SK674]
Length = 295
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|307708571|ref|ZP_07645035.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
mitis NCTC 12261]
gi|307615320|gb|EFN94529.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
mitis NCTC 12261]
Length = 295
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDIVTY--HVPEPEVLEYVAENLPLDIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|419508000|ref|ZP_14047653.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA49542]
gi|379611718|gb|EHZ76440.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA49542]
Length = 295
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDIVTY--HVPEPEVLEYVAENLPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|398339574|ref|ZP_10524277.1| ribosomal large subunit pseudouridine synthase C [Leptospira
kirschneri serovar Bim str. 1051]
gi|418687467|ref|ZP_13248626.1| RNA pseudouridine synthase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418742343|ref|ZP_13298716.1| RNA pseudouridine synthase [Leptospira kirschneri serovar Valbuzzi
str. 200702274]
gi|410737791|gb|EKQ82530.1| RNA pseudouridine synthase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410750701|gb|EKR07681.1| RNA pseudouridine synthase [Leptospira kirschneri serovar Valbuzzi
str. 200702274]
Length = 367
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 113/258 (43%), Gaps = 47/258 (18%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKIS-HFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVH 163
GRI V + V ++K +S H + + EPPV D IL ++ + V KP +PVH
Sbjct: 55 GRILVSSKTVKPGVSLKEGDLVSYHPIQKEEPPVRN-DYKILYEDEFFVAVDKPGDLPVH 113
Query: 164 PCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIK 223
P G YRK ++ L+ LF +HRLDR SG+++ A+N+ A + G + K
Sbjct: 114 PAGIYRKGNLLTFLKESGKFKDLFTIHRLDRETSGVILFAKNSEIASSLSKSFSLGNIQK 173
Query: 224 RYIARVNGVFPEGEQ---VVDVNINYNASAGR--------------------STAESGDS 260
YI +V G FP+ + ++ +++ R S E +
Sbjct: 174 YYITKVYGDFPKRKSAYGILKPDLSSKIRKKRTFVPLKFDFLKRNKKYLFDNSIMEKQEE 233
Query: 261 LGDTPLKG------KAACTKFTRIS----------------TNGTHSIVLCEPITGRTHQ 298
+ T + + + KF++I HSI+LC PITGR HQ
Sbjct: 234 ISLTYFQKVEFDRRRESKFKFSKIEFQFQNMKNEKMGSVLLNQEDHSILLCRPITGRMHQ 293
Query: 299 IRVHLQYTGYPIANDMLY 316
IR L G+P+ D LY
Sbjct: 294 IRATLFSLGFPLFGDKLY 311
>gi|395244673|ref|ZP_10421628.1| Pseudouridine synthase [Lactobacillus hominis CRBIP 24.179]
gi|394483026|emb|CCI82636.1| Pseudouridine synthase [Lactobacillus hominis CRBIP 24.179]
Length = 305
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 18/220 (8%)
Query: 107 IQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA---WDVSILQKEPDVLTVCKPPSVPVH 163
I V++++V SY ++S KIS + +P ++ ++ ++ ++ DV+ V KP V VH
Sbjct: 41 ILVNDKVVKASYKLESGDKISVTIPPKKPLSLSAQDMNLDVVYEDQDVIVVNKPQGVVVH 100
Query: 164 PCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADLFRQQI 216
P + +T+V G+L DLA P VHR+D+ SGLL++A+N + Q+
Sbjct: 101 PSAGHPDHTLVNGLLYHTQDLAKSPEGFRPGIVHRIDKDTSGLLMIAKNDKARESLEDQL 160
Query: 217 EAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFT 276
+ Y+A V+G F V++ I N + + A + KGK A T F
Sbjct: 161 AHKTNKREYLAIVHGNFEAKIGVINAPIGRNPNNRKQMAVNP--------KGKKAITHFE 212
Query: 277 RISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ +++V C TGRTHQIRVH++Y G+PIA D LY
Sbjct: 213 VLEQFKNYALVKCVLETGRTHQIRVHMRYIGHPIAGDPLY 252
>gi|418086666|ref|ZP_12723836.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47033]
gi|418202207|ref|ZP_12838637.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA52306]
gi|419455331|ref|ZP_13995291.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP04]
gi|421284859|ref|ZP_15735636.1| pseudouridine synthase [Streptococcus pneumoniae GA60190]
gi|353758927|gb|EHD39513.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47033]
gi|353868010|gb|EHE47900.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA52306]
gi|379629788|gb|EHZ94382.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP04]
gi|395886838|gb|EJG97853.1| pseudouridine synthase [Streptococcus pneumoniae GA60190]
Length = 295
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHISGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LVLAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|322376434|ref|ZP_08050927.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
M334]
gi|321282241|gb|EFX59248.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
M334]
Length = 296
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAENLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ A GRS E KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIE------APIGRS--EKDRKKQGVTAKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|225858727|ref|YP_002740237.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae 70585]
gi|225722071|gb|ACO17925.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae 70585]
Length = 295
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|417923129|ref|ZP_12566601.1| pseudouridine synthase, RluA family [Streptococcus mitis SK569]
gi|342837252|gb|EGU71448.1| pseudouridine synthase, RluA family [Streptococcus mitis SK569]
Length = 295
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKLGQVLVNGQVKKAKYTVQEGDIVTY--HVTEPEVLEYVAEDIPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMVAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|418974939|ref|ZP_13522848.1| pseudouridine synthase, RluA family [Streptococcus oralis SK1074]
gi|383348310|gb|EID26269.1| pseudouridine synthase, RluA family [Streptococcus oralis SK1074]
Length = 299
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ + YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGQAKKAKYTVQEGDIVTY--HVPEPEVLEYVAENLPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|418966478|ref|ZP_13518213.1| pseudouridine synthase, RluA family [Streptococcus mitis SK616]
gi|383347283|gb|EID25273.1| pseudouridine synthase, RluA family [Streptococcus mitis SK616]
Length = 295
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKLGQVLVNGQVKKAKYTVQEGDIVTY--HVPEPEVLEYVAENLPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMVAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|419781535|ref|ZP_14307354.1| pseudouridine synthase, RluA family [Streptococcus oralis SK100]
gi|383184135|gb|EIC76662.1| pseudouridine synthase, RluA family [Streptococcus oralis SK100]
Length = 299
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDIPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYSLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|15900809|ref|NP_345413.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae TIGR4]
gi|111658131|ref|ZP_01408829.1| hypothetical protein SpneT_02000697 [Streptococcus pneumoniae
TIGR4]
gi|148992939|ref|ZP_01822558.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP9-BS68]
gi|149010429|ref|ZP_01831800.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP19-BS75]
gi|168485879|ref|ZP_02710387.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae CDC1087-00]
gi|168490255|ref|ZP_02714454.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP195]
gi|169834331|ref|YP_001694382.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae Hungary19A-6]
gi|182683874|ref|YP_001835621.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae CGSP14]
gi|194398681|ref|YP_002037566.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae G54]
gi|303259840|ref|ZP_07345815.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP-BS293]
gi|303262254|ref|ZP_07348198.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP14-BS292]
gi|303264676|ref|ZP_07350594.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae BS397]
gi|303267177|ref|ZP_07353044.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae BS457]
gi|303269425|ref|ZP_07355194.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae BS458]
gi|387759186|ref|YP_006066164.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
INV200]
gi|417678882|ref|ZP_12328279.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17570]
gi|417686371|ref|ZP_12335649.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41301]
gi|417693847|ref|ZP_12343036.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47901]
gi|418121000|ref|ZP_12757946.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44194]
gi|418125537|ref|ZP_12762448.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44511]
gi|418130094|ref|ZP_12766978.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA07643]
gi|418139276|ref|ZP_12776106.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13338]
gi|418159604|ref|ZP_12796303.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17227]
gi|418180384|ref|ZP_12816955.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41688]
gi|418184744|ref|ZP_12821291.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47283]
gi|418186941|ref|ZP_12823470.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47360]
gi|418189160|ref|ZP_12825675.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47373]
gi|418191474|ref|ZP_12827978.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47388]
gi|418200243|ref|ZP_12836688.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47976]
gi|418214101|ref|ZP_12840836.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA54644]
gi|418229675|ref|ZP_12856281.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP01]
gi|418234127|ref|ZP_12860706.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA08780]
gi|419477594|ref|ZP_14017419.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA18068]
gi|419484207|ref|ZP_14023983.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA43257]
gi|419490848|ref|ZP_14030588.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47179]
gi|419510550|ref|ZP_14050194.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP141]
gi|419514486|ref|ZP_14054113.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae England14-9]
gi|419520864|ref|ZP_14060460.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA05245]
gi|419523187|ref|ZP_14062767.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13723]
gi|419530255|ref|ZP_14069785.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA40028]
gi|419532159|ref|ZP_14071676.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47794]
gi|421206376|ref|ZP_15663437.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2090008]
gi|421212985|ref|ZP_15669946.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070108]
gi|421215158|ref|ZP_15672086.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070109]
gi|421220079|ref|ZP_15676929.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070425]
gi|421222406|ref|ZP_15679197.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070531]
gi|421229571|ref|ZP_15686244.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2061376]
gi|421247189|ref|ZP_15703676.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2082170]
gi|421268130|ref|ZP_15719002.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SPAR95]
gi|421270609|ref|ZP_15721465.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SPAR48]
gi|421274831|ref|ZP_15725663.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA52612]
gi|421278704|ref|ZP_15729512.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17301]
gi|421291800|ref|ZP_15742538.1| pseudouridine synthase [Streptococcus pneumoniae GA56348]
gi|421294236|ref|ZP_15744959.1| pseudouridine synthase [Streptococcus pneumoniae GA56113]
gi|421296078|ref|ZP_15746790.1| pseudouridine synthase [Streptococcus pneumoniae GA58581]
gi|421300778|ref|ZP_15751449.1| pseudouridine synthase [Streptococcus pneumoniae GA19998]
gi|421311669|ref|ZP_15762276.1| pseudouridine synthase [Streptococcus pneumoniae GA58981]
gi|14972404|gb|AAK75053.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae TIGR4]
gi|147764910|gb|EDK71839.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP19-BS75]
gi|147928391|gb|EDK79407.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP9-BS68]
gi|168996833|gb|ACA37445.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae Hungary19A-6]
gi|182629208|gb|ACB90156.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae CGSP14]
gi|183571050|gb|EDT91578.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae CDC1087-00]
gi|183571388|gb|EDT91916.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP195]
gi|194358348|gb|ACF56796.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae G54]
gi|301801775|emb|CBW34486.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
INV200]
gi|302636577|gb|EFL67068.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP14-BS292]
gi|302639045|gb|EFL69505.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP-BS293]
gi|302641044|gb|EFL71422.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae BS458]
gi|302643292|gb|EFL73572.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae BS457]
gi|302645763|gb|EFL75992.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae BS397]
gi|332073261|gb|EGI83740.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17570]
gi|332076208|gb|EGI86674.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41301]
gi|332204930|gb|EGJ18995.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47901]
gi|353793827|gb|EHD74186.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44194]
gi|353797791|gb|EHD78122.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44511]
gi|353803386|gb|EHD83678.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA07643]
gi|353821337|gb|EHE01513.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17227]
gi|353845996|gb|EHE26034.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41688]
gi|353851280|gb|EHE31276.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47283]
gi|353852766|gb|EHE32752.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47360]
gi|353856302|gb|EHE36271.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47373]
gi|353857375|gb|EHE37338.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47388]
gi|353865290|gb|EHE45199.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47976]
gi|353871384|gb|EHE51255.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA54644]
gi|353888372|gb|EHE68146.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA08780]
gi|353889581|gb|EHE69351.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP01]
gi|353905519|gb|EHE80942.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13338]
gi|379539878|gb|EHZ05055.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA05245]
gi|379557918|gb|EHZ22955.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13723]
gi|379566976|gb|EHZ31963.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA18068]
gi|379574254|gb|EHZ39198.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA40028]
gi|379583718|gb|EHZ48595.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA43257]
gi|379594427|gb|EHZ59237.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47179]
gi|379606329|gb|EHZ71077.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47794]
gi|379633743|gb|EHZ98312.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP141]
gi|379637582|gb|EIA02135.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae England14-9]
gi|395576290|gb|EJG36846.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2090008]
gi|395580572|gb|EJG41053.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070108]
gi|395581291|gb|EJG41763.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070109]
gi|395588356|gb|EJG48686.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070425]
gi|395588574|gb|EJG48902.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070531]
gi|395596383|gb|EJG56601.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2061376]
gi|395614825|gb|EJG74843.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2082170]
gi|395868404|gb|EJG79522.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SPAR48]
gi|395871554|gb|EJG82660.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SPAR95]
gi|395875559|gb|EJG86640.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA52612]
gi|395880137|gb|EJG91190.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17301]
gi|395894017|gb|EJH04998.1| pseudouridine synthase [Streptococcus pneumoniae GA56348]
gi|395894526|gb|EJH05506.1| pseudouridine synthase [Streptococcus pneumoniae GA56113]
gi|395897291|gb|EJH08255.1| pseudouridine synthase [Streptococcus pneumoniae GA58581]
gi|395900202|gb|EJH11141.1| pseudouridine synthase [Streptococcus pneumoniae GA19998]
gi|395912247|gb|EJH23110.1| pseudouridine synthase [Streptococcus pneumoniae GA58981]
Length = 295
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|417794337|ref|ZP_12441595.1| pseudouridine synthase, RluA family [Streptococcus oralis SK255]
gi|334270181|gb|EGL88588.1| pseudouridine synthase, RluA family [Streptococcus oralis SK255]
Length = 299
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ + YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGQAKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|148996979|ref|ZP_01824633.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP11-BS70]
gi|168491017|ref|ZP_02715160.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae CDC0288-04]
gi|168575592|ref|ZP_02721528.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae MLV-016]
gi|237651118|ref|ZP_04525370.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae CCRI 1974]
gi|237821884|ref|ZP_04597729.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae CCRI 1974M2]
gi|307067586|ref|YP_003876552.1| 23S RNA-specific pseudouridylate synthase [Streptococcus pneumoniae
AP200]
gi|405761056|ref|YP_006701652.1| RNA pseudouridylate synthase [Streptococcus pneumoniae SPNA45]
gi|418143738|ref|ZP_12780538.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13494]
gi|418193557|ref|ZP_12830049.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47439]
gi|419457307|ref|ZP_13997252.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA02254]
gi|419470884|ref|ZP_14010743.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA07914]
gi|419481952|ref|ZP_14021745.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA40563]
gi|419503742|ref|ZP_14043411.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47760]
gi|421238560|ref|ZP_15695129.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2071247]
gi|421244751|ref|ZP_15701253.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2081685]
gi|421314096|ref|ZP_15764686.1| pseudouridine synthase [Streptococcus pneumoniae GA47562]
gi|147756679|gb|EDK63719.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP11-BS70]
gi|183574680|gb|EDT95208.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae CDC0288-04]
gi|183578513|gb|EDT99041.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae MLV-016]
gi|306409123|gb|ADM84550.1| Pseudouridylate synthase, 23S RNA-specific [Streptococcus
pneumoniae AP200]
gi|353809479|gb|EHD89739.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13494]
gi|353859537|gb|EHE39487.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47439]
gi|379532305|gb|EHY97534.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA02254]
gi|379545600|gb|EHZ10739.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA07914]
gi|379580826|gb|EHZ45715.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA40563]
gi|379606419|gb|EHZ71166.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47760]
gi|395603147|gb|EJG63288.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2071247]
gi|395609928|gb|EJG70012.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2081685]
gi|395914596|gb|EJH25440.1| pseudouridine synthase [Streptococcus pneumoniae GA47562]
gi|404277945|emb|CCM08515.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
SPNA45]
Length = 295
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|342163977|ref|YP_004768616.1| 23S rRNA pseudouridine synthase [Streptococcus pseudopneumoniae
IS7493]
gi|341933859|gb|AEL10756.1| 23S rRNA pseudouridine synthase [Streptococcus pseudopneumoniae
IS7493]
Length = 295
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIIYQDEDVAIVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|410451821|ref|ZP_11305821.1| S4 domain protein [Leptospira sp. Fiocruz LV3954]
gi|410014326|gb|EKO76458.1| S4 domain protein [Leptospira sp. Fiocruz LV3954]
Length = 366
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 138/340 (40%), Gaps = 76/340 (22%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHF-LHRHEPP 136
AG + +++F + + GRI + + V +K + I + + R EPP
Sbjct: 21 AGTRLDHFLSKKFTYHSRTVWQKEINEGRITISGKKVKSGILLKEGETIVYQPVGRKEPP 80
Query: 137 VMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLV 196
V D IL ++ + V KP +PVHP G+YRK ++ +L+ LF VHRLDR
Sbjct: 81 VRK-DYEILYEDEFFVAVNKPGDLPVHPAGKYRKGNLLTLLKGSGRFENLFTVHRLDRET 139
Query: 197 SGLLILARNASKADLFRQQIEAGKVIKRYIARVNG------------------------- 231
SG+++ A+++ A + +GKV K YI +V G
Sbjct: 140 SGVVLFAKDSETASILSGFFSSGKVQKYYITKVYGDFPRRKIAYGVLKPDFSSKIRKKKK 199
Query: 232 ---------------VFPEGEQVVD---------------VNINYNASAGRSTAESGDS- 260
VF + V+ +N N+ A S + S ++
Sbjct: 200 FFSLKFNFLKRNKRFVFENSSETVERERCLTYFKKIEFDFLNRNFEAQDANSNSGSRNAR 259
Query: 261 LGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY---- 316
+ D +G+ R + +S VLC+PITGR HQIR L G+P+ D LY
Sbjct: 260 IEDEESQGQG-----NRERKSEVYSFVLCKPITGRMHQIRAVLYGLGFPVLGDKLYGRDE 314
Query: 317 --LCEHV-------THREGMSADRAAAYSHHSPPPVSSDK 347
E + T R GM +Y+ P+++ K
Sbjct: 315 EVFLEFIEGKNPDLTARLGMERQALHSYAIRFNHPITNQK 354
>gi|303254977|ref|ZP_07341056.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae BS455]
gi|302598057|gb|EFL65124.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae BS455]
Length = 295
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|358464702|ref|ZP_09174663.1| pseudouridine synthase, RluA family [Streptococcus sp. oral taxon
058 str. F0407]
gi|357066669|gb|EHI76811.1| pseudouridine synthase, RluA family [Streptococcus sp. oral taxon
058 str. F0407]
Length = 299
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGQVKKAKYTVQEGDIVTY--HVPEPEVLEYVAEELPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYSLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|417849155|ref|ZP_12495080.1| pseudouridine synthase, RluA family [Streptococcus mitis SK1080]
gi|339456782|gb|EGP69364.1| pseudouridine synthase, RluA family [Streptococcus mitis SK1080]
Length = 295
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKLGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDIPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|306825452|ref|ZP_07458792.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|304432390|gb|EFM35366.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
oral taxon 071 str. 73H25AP]
Length = 299
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGQVKKAKYTVQEGDIVTY--HVPEPEVLEYVAEDIPLDIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYSLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|386319539|ref|YP_006015702.1| ribosomal large subunit pseudouridine synthase, RluA family
[Staphylococcus pseudintermedius ED99]
gi|323464710|gb|ADX76863.1| ribosomal large subunit pseudouridine synthase, RluA family
[Staphylococcus pseudintermedius ED99]
Length = 305
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 112/229 (48%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTV 154
+K G I+V+ + V +Y +K +I E V+ D+ I ++ DV V
Sbjct: 38 IKEGLIEVNGKAVKSNYKLKLGDRIE----ITEKEVVEADIQAENLNLDIYYEDDDVAIV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPLFP------VHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ +L+ + VHR+D+ SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTGTLVNGLMYQIKNLSGINSEIRPGIVHRIDKDTSGLLMVAKNDV 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ A V ++YIA V+G P +D I N + +S A D
Sbjct: 154 AHRSLVEQLMAKTVKRKYIALVHGHIPHEFGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F I T +++V CE TGRTHQIRVH++Y GYP+ D Y
Sbjct: 206 GKEAVTHFNVIETFKNYTLVECELETGRTHQIRVHMKYIGYPLVGDPKY 254
>gi|381207974|ref|ZP_09915045.1| pseudouridine synthase, RluA family protein [SAR324 cluster
bacterium JCVI-SC AAA005]
Length = 320
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 117/238 (49%), Gaps = 8/238 (3%)
Query: 80 KTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFL-HRHEPPVM 138
+T+++ F+ +V +K G + VD + ++++Q++ + EPPV
Sbjct: 24 ETLLEFLLRRFRYYGSKEWVDHIKSGHLLVDGQQGKAWQKLRNNQRVVYLRPDSLEPPVD 83
Query: 139 AWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSG 198
A D +L ++ ++ + K +P P G+Y KNT++ +++ L+ +HRLDR SG
Sbjct: 84 A-DYEVLFEDEWLIGLNKTGDLPTSPSGRYFKNTLMHLVRERFGWQKLYTIHRLDRETSG 142
Query: 199 LLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESG 258
+++ A+ A ++ K Y A V G PE E +V I ++S+ +S
Sbjct: 143 VVLFAKTHQMAQQMAALFRDKQIRKEYRAVVAGSLPEEEILVSKPIGPDSSSSIRIKQS- 201
Query: 259 DSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK + T F ++ G + + P+TGRTHQIRVH +G+PI D LY
Sbjct: 202 -----VCENGKPSETHFRQLKPIGRCAYLQIHPMTGRTHQIRVHAAASGFPIVGDKLY 254
>gi|419466373|ref|ZP_14006256.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA05248]
gi|379544496|gb|EHZ09640.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA05248]
Length = 295
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAENLPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHISGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|372266753|ref|ZP_09502801.1| 23S rRNA pseudouridylate synthase C [Alteromonas sp. S89]
Length = 309
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 127/263 (48%), Gaps = 25/263 (9%)
Query: 68 EFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS 127
+FI+ V AG+ + + KG P ++ G +++++ V Y +++ +
Sbjct: 6 QFIT-VPEELAGQRVDNFLQARLKGVPRSRVYRILRKGEVRINKGRVKAEYRLQAGDVVR 64
Query: 128 ---HFLHRHEPPVMAWD-------VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGIL 177
+ PP +A D +IL + +L V KP + VH R +G++
Sbjct: 65 VPPIRVSEETPPAVAGDQLRRTLEAAILYDQGGLLVVNKPAGLAVHGGSGVR----LGLI 120
Query: 178 QAEHDLAPLFP----VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVF 233
+A + P P VHRLDR SG +++AR + + ++ AGK+ K Y+A G +
Sbjct: 121 EALRQMYPESPFMELVHRLDRDTSGAILVARKRAVLLHVQSELRAGKMDKSYLALAVGKW 180
Query: 234 PEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPIT 293
P +++V+ + N T +SG+ + +GK + T+F +++ EP+T
Sbjct: 181 PRAQKLVEAPLRKN------TLKSGERMVVVDGEGKPSTTRFQVEERLDGATLMRAEPVT 234
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GRTHQIRVH Q+ G P+A D Y
Sbjct: 235 GRTHQIRVHAQFVGCPLAGDAKY 257
>gi|421242879|ref|ZP_15699400.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2081074]
gi|395609578|gb|EJG69664.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2081074]
Length = 295
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|417915153|ref|ZP_12558774.1| pseudouridine synthase, RluA family [Streptococcus mitis bv. 2 str.
SK95]
gi|342835267|gb|EGU69518.1| pseudouridine synthase, RluA family [Streptococcus mitis bv. 2 str.
SK95]
Length = 299
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ + YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGQAKKAKYTVQEGDIVTY--HVPEPEVLEYVAEDIPLDIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYSLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|406587502|ref|ZP_11062382.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD1S]
gi|419813600|ref|ZP_14338413.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD2S]
gi|419816963|ref|ZP_14341134.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD4S]
gi|404466504|gb|EKA11836.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD4S]
gi|404472711|gb|EKA17126.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD2S]
gi|404473015|gb|EKA17386.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD1S]
Length = 299
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGQVKKAKYTVQEGDIVTY--HVPEPEVLEYVAEDIPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYSLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|322374526|ref|ZP_08049040.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
C300]
gi|321280026|gb|EFX57065.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
C300]
Length = 299
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ + YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGQAKKAKYTVQEGDIVTY--HVPEPEVLEYVAENLPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNSLMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|421488498|ref|ZP_15935886.1| pseudouridine synthase, RluA family [Streptococcus oralis SK304]
gi|400367715|gb|EJP20730.1| pseudouridine synthase, RluA family [Streptococcus oralis SK304]
Length = 299
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ + YTV+ +++ H EP V+ + + I+ ++ DV+ V K
Sbjct: 31 IKAGQVLVNGQAKKAKYTVQEGDIVTY--HVPEPEVLEYVAEDIPLDIIYQDEDVVVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|268319474|ref|YP_003293130.1| pseudouridine synthase, RluA family [Lactobacillus johnsonii
FI9785]
gi|262397849|emb|CAX66863.1| pseudouridine synthase, RluA family [Lactobacillus johnsonii
FI9785]
Length = 304
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 28/225 (12%)
Query: 107 IQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTVCKPPS 159
I V+ + VSY V+S I + PPV + I+ ++ DV+ V KP
Sbjct: 41 ILVNNKAEKVSYKVQSGDVIDVTI----PPVKPLSLEAENLHLDIVYEDSDVIVVNKPQG 96
Query: 160 VPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADLF 212
+ VHP + +T+V G+L DLA P VHR+D+ SGLL++A+N +
Sbjct: 97 MVVHPSAGHPDHTLVNGLLYHTRDLADSPEGFRPGIVHRIDKDTSGLLMIAKNDRARESL 156
Query: 213 RQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q+ A K+ KR Y+A V+G F V++ I N ++ + A + KGKAA
Sbjct: 157 EKQL-AKKINKREYLAIVHGNFEVKNGVINAPIGRNPNSRKQMAVNP--------KGKAA 207
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T FT + +S+V C TGRTHQIRVH++Y G+P+A D LY
Sbjct: 208 VTHFTVLEQFKNYSLVKCVLETGRTHQIRVHMKYIGHPLAGDPLY 252
>gi|406836859|ref|ZP_11096453.1| rhodanese superfamily protein [Schlesneria paludicola DSM 18645]
Length = 615
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 132/274 (48%), Gaps = 28/274 (10%)
Query: 63 KPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV-----------DE 111
+PY +V + G+T++D + F P D + A GR++ DE
Sbjct: 299 QPYENHRPLNVPAEFDGRTMLDFLSTIFSHIPADDWKRACDEGRLRKRHVPRQGRTLEDE 358
Query: 112 EMVPVS--YTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYR 169
PV+ V++ + H P + ++ I+ ++ +L V KP +P+HPCG++
Sbjct: 359 SSTPVAGDAIVRAGAQYFHVQPAAPEPDVNAEIRIVHEDEAILVVHKPAPLPMHPCGRFN 418
Query: 170 KNTVVGIL-QAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI---EAGKVIKRY 225
+NT+ IL + H +P P HRLD +GL++ +R A + + Q + G + KRY
Sbjct: 419 RNTLQHILGKLYHPQSPR-PAHRLDANTTGLVLFSRTRHFARILQAQFDPNQGGGIEKRY 477
Query: 226 IARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRIST--NGT 283
+ARV G P + D+ I AS S A + G A T+F + +GT
Sbjct: 478 LARVQGHPPHDQFHCDLPIQDEASELGSRAIDFE-------HGLPARTEFRVLDRYPDGT 530
Query: 284 HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYL 317
S++ PITGRT+QIRVHL + Y I D YL
Sbjct: 531 -SLLEAVPITGRTNQIRVHLWHLDYAICGDPTYL 563
>gi|319892189|ref|YP_004149064.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
pseudintermedius HKU10-03]
gi|317161885|gb|ADV05428.1| Ribosomal large subunit pseudouridine synthase D [Staphylococcus
pseudintermedius HKU10-03]
Length = 305
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 112/229 (48%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTV 154
+K G I+V+ + V +Y +K +I E V+ D+ I ++ DV V
Sbjct: 38 IKEGLIEVNGKAVKSNYKLKLGDRIE----ITEKEVVEADIQAENLNLDIYYEDDDVAIV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ +L+ + VHR+D+ SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTGTLVNGLMYQIKNLSGINGEIRPGIVHRIDKDTSGLLMVAKNDV 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ A V ++YIA V+G P +D I N + +S A D
Sbjct: 154 AHRSLVEQLMAKTVKRKYIALVHGHIPHEFGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F I T +++V CE TGRTHQIRVH++Y GYP+ D Y
Sbjct: 206 GKEAVTHFNVIETFKNYTLVECELETGRTHQIRVHMKYIGYPLVGDPKY 254
>gi|289167775|ref|YP_003446044.1| 23S_rRNA pseudouridine synthase [Streptococcus mitis B6]
gi|288907342|emb|CBJ22179.1| 23S rRNA pseudouridine synthase [Streptococcus mitis B6]
Length = 295
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAENIPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q ++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQDLKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|319937281|ref|ZP_08011688.1| pseudouridine synthase [Coprobacillus sp. 29_1]
gi|319807647|gb|EFW04240.1| pseudouridine synthase [Coprobacillus sp. 29_1]
Length = 305
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 120/254 (47%), Gaps = 29/254 (11%)
Query: 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPP-V 137
G+ I + A+E S ++ G + +DE+ + SY V++ + + ++ + E +
Sbjct: 14 GQRIDKILAKELADFSRTQIQSLIQNGYVVIDEKPIKASYKVETGEDVIVYIPKPESTDI 73
Query: 138 MAWDV--SILQKEPDVLTVCKPPSVPVHP-CGQYRKNTVVGILQAEHDLAPL------FP 188
+ D+ ++ ++ DV+ + KP + VHP G Y V +L HDL+ +
Sbjct: 74 LPEDIPLDVVYEDQDVIVINKPTGMIVHPSIGIYSGTLVNALLYHCHDLSGINGVTRPGI 133
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNA 248
VHR+D+ SGLL++A+N +Q++ V +RY+A V+G+ P
Sbjct: 134 VHRIDKETSGLLMVAKNDKAHQSLSKQLQEHTVTRRYLALVHGLIPH------------- 180
Query: 249 SAGRSTAESGDSLGD------TPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVH 302
GR A G D T K A T F I S+V C TGRTHQIRVH
Sbjct: 181 EFGRIEAPIGRDKNDRQKMTCTDKNAKDAITNFKVIERFRDMSLVECRLETGRTHQIRVH 240
Query: 303 LQYTGYPIANDMLY 316
+QY GYP+ D Y
Sbjct: 241 MQYIGYPVYGDPQY 254
>gi|331266599|ref|YP_004326229.1| 23S rluA family pseudouridine synthase [Streptococcus oralis Uo5]
gi|419783245|ref|ZP_14309036.1| pseudouridine synthase, RluA family [Streptococcus oralis SK610]
gi|326683271|emb|CBZ00889.1| 23S rluA family pseudouridine synthase [Streptococcus oralis Uo5]
gi|383182399|gb|EIC74954.1| pseudouridine synthase, RluA family [Streptococcus oralis SK610]
Length = 299
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ + YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGQAKKAKYTVQEGDIVTY--HVPEPEVLEYVAEDIPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYSLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|418677905|ref|ZP_13239179.1| RNA pseudouridine synthase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|400321095|gb|EJO68955.1| RNA pseudouridine synthase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
Length = 369
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 113/260 (43%), Gaps = 49/260 (18%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKIS-HFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVH 163
GRI V + V ++K +S H + + EPPV D IL ++ + V KP +PVH
Sbjct: 55 GRILVSSKTVKPGVSLKEGDLVSYHPIQKEEPPVRN-DYKILYEDEFFVAVDKPGDLPVH 113
Query: 164 PCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIK 223
P G YRK ++ L+ LF +HRLDR SG+++ A+N+ A + G + K
Sbjct: 114 PAGIYRKGNLLTFLKESGKFKDLFTIHRLDRETSGVILFAKNSEIASSLSKSFSLGNIQK 173
Query: 224 RYIARVNGVFPEGEQ---VVDVNINYNASAGR--------------------STAESGDS 260
YI +V G FP+ + ++ +++ R S E +
Sbjct: 174 YYITKVYGDFPKRKSAYGILKPDLSSKIRKKRTFVPLKFDFLKRNKKYLFDNSIMEKQEE 233
Query: 261 LGDTPLKG------KAACTKFTRISTNGT------------------HSIVLCEPITGRT 296
+ T + + + KF++I HSI+LC PITGR
Sbjct: 234 ISLTYFQKVEFDRRRESKFKFSKIEFQFQNMKNEKMGSVFLNQEKDHHSILLCRPITGRM 293
Query: 297 HQIRVHLQYTGYPIANDMLY 316
HQIR L G+P+ D LY
Sbjct: 294 HQIRATLFSLGFPLFGDKLY 313
>gi|293365185|ref|ZP_06611902.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
oralis ATCC 35037]
gi|307703723|ref|ZP_07640664.1| pseudouridine synthase, RluA family protein [Streptococcus oralis
ATCC 35037]
gi|291316635|gb|EFE57071.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
oralis ATCC 35037]
gi|307622558|gb|EFO01554.1| pseudouridine synthase, RluA family protein [Streptococcus oralis
ATCC 35037]
Length = 299
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ + YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGQAKKAKYTVQDGDIVTY--HVPEPEVLEYVAENLPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYSLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|417848519|ref|ZP_12494462.1| pseudouridine synthase, RluA family [Streptococcus mitis SK1073]
gi|339452553|gb|EGP65179.1| pseudouridine synthase, RluA family [Streptococcus mitis SK1073]
Length = 295
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G + V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGHVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAENLPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNSLMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|317129279|ref|YP_004095561.1| pseudouridine synthase [Bacillus cellulosilyticus DSM 2522]
gi|315474227|gb|ADU30830.1| pseudouridine synthase, RluA family [Bacillus cellulosilyticus DSM
2522]
Length = 305
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 109/222 (49%), Gaps = 21/222 (9%)
Query: 107 IQVDEEMVPVSYTVKSSQKISHFLHRHEP-----PVMAWDVSILQKEPDVLTVCKPPSVP 161
IQV+ + Y VK+ I + +P P ++ I+ ++ DVL V KP +
Sbjct: 40 IQVNGTPIKSKYKVKAGDHIE--IREPDPIPLEIPAENLNLDIIYEDGDVLVVNKPRGMV 97
Query: 162 VHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADLFRQ 214
VHP G Y V G++ HDL+ + VHR+D+ SGLL++A+N +
Sbjct: 98 VHPAPGHYTGTLVNGLMYHCHDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDRAHESLVN 157
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTK 274
Q++ + +RY A V+G+ P + +D I N E S+ T + A T
Sbjct: 158 QLKNKETKRRYYAIVSGIIPHDKGTIDAPIGRNP-------EDRQSMMVTEKNSRDAVTH 210
Query: 275 FTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
F + H++V CE TGRTHQIRVHL+Y G+PI D Y
Sbjct: 211 FQVVERFYRHTLVSCELETGRTHQIRVHLKYIGFPIVGDPKY 252
>gi|313890534|ref|ZP_07824162.1| pseudouridine synthase, RluA family [Streptococcus pseudoporcinus
SPIN 20026]
gi|416850955|ref|ZP_11908296.1| pseudouridine synthase, RluA family [Streptococcus pseudoporcinus
LQ 940-04]
gi|313121051|gb|EFR44162.1| pseudouridine synthase, RluA family [Streptococcus pseudoporcinus
SPIN 20026]
gi|356740634|gb|EHI65857.1| pseudouridine synthase, RluA family [Streptococcus pseudoporcinus
LQ 940-04]
Length = 299
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ + V Y VKS I++ L E V+ + + I+ ++ D+ + K
Sbjct: 31 IKKGLVLVNGQAVKAKYNVKSGDNITYQLPEEE--VLDYQAENLPIDIIYEDSDLAIINK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
+ VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 89 AQGMVVHPSAGHSSGTLVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKNDKAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ ++++A K ++ Y+A V+G P +++ A GRS E +KGK
Sbjct: 149 QVLAEELKAKKSLRNYLAIVHGNLPNDRGMIE------APIGRS--EKDRKKQSVTVKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+FT + G ++++ TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 201 DAVTRFTVLERFGDYTLLELSLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|417939828|ref|ZP_12583116.1| pseudouridine synthase, RluA family [Streptococcus oralis SK313]
gi|343388709|gb|EGV01294.1| pseudouridine synthase, RluA family [Streptococcus oralis SK313]
Length = 299
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ + YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGQAKKAKYTVQEGDVVTY--HVPEPEVLEYVAENLPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYTLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|401399259|ref|XP_003880514.1| hypothetical protein NCLIV_009500 [Neospora caninum Liverpool]
gi|325114924|emb|CBZ50481.1| hypothetical protein NCLIV_009500 [Neospora caninum Liverpool]
Length = 914
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 130/264 (49%), Gaps = 22/264 (8%)
Query: 27 GNGNGNSSNNMEIVWQTPANPPVKEDY-IFRDGR----RNVKPYYFEFISHVKNRWAGKT 81
GN + +S EI + A PV E++ D + V PY+ F + VK RW K
Sbjct: 25 GNEDALASCKSEIAGSSAACVPVPENFKAVPDPSYITVKVVPPYWHTFETDVKLRWRDKE 84
Query: 82 IVDLFAEEFKGRPYDYYVSAVKCGR-IQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW 140
I+ + EF+ RP YY A++ G+ I V+ + +++ ++H E + W
Sbjct: 85 ILAVVTREFRSRPESYYQRAIESGKFILVNNQACKCDTVLRNGDHLTHRTLEIEFAI-PW 143
Query: 141 D--VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH----DLAPLFPVHRLDR 194
V +L ++ ++ KP +PVHP G+Y + ++ G+L+ H A L PV+RLDR
Sbjct: 144 TTPVHVLYEDDGLVAAFKPAGMPVHPQGRYTQGSLTGVLKRFHLRQLMSAYLHPVNRLDR 203
Query: 195 LVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE-GEQVVDVNINYNASAGRS 253
+ +G++ILA+N+ +A I G +K YIARV G F E++ + RS
Sbjct: 204 VTAGVVILAKNSIQARTLTTAI--GSALKLYIARVEGNFSNIVEKIATASREARVGETRS 261
Query: 254 TAES-GDSLGDT-----PLKGKAA 271
+S G+ DT PL+ + A
Sbjct: 262 DWKSVGERFADTVAEEDPLEAEEA 285
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 268 GKAACTKFTRI--STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHR 324
GK A T F + N S+V C P+TGRTHQIR HLQ G I D LY + T R
Sbjct: 553 GKEAETVFKLLHYDENSDTSLVACIPLTGRTHQIRKHLQILGTSIVGDALYPTKSTTRR 611
>gi|344230776|gb|EGV62661.1| pseudouridine synthase [Candida tenuis ATCC 10573]
Length = 310
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 92/179 (51%), Gaps = 10/179 (5%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLI 201
++++ + + L V KP +PVHP Y N+V IL+ + L ++ HRLD++ SG+LI
Sbjct: 12 INVIFHDHNYLVVNKPAGIPVHPTSNYLYNSVSEILKFDLKLENIWTSHRLDKVTSGVLI 71
Query: 202 LARNASKADLFRQQIE--AGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGD 259
L N + IE + K Y ARV G FP+ + N + G
Sbjct: 72 LGLNKDTGSRLSKIIEHKSDHTTKTYFARVQGYFPDTYTYKCPIVLVNPNGGYLMP---- 127
Query: 260 SLGDTPLKGKAACTKFTRI--STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
G+ ++ TKF R+ ST SIV C PI+G+ HQIRVHL+ G+PI ND +Y
Sbjct: 128 --GNLSKLVTSSTTKFKRLQYSTFLDESIVECTPISGKMHQIRVHLRNIGFPITNDWVY 184
>gi|306829292|ref|ZP_07462482.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
mitis ATCC 6249]
gi|304428378|gb|EFM31468.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
mitis ATCC 6249]
Length = 299
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ + YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKVGQVLVNGQAKKAKYTVQEGDIVTY--HVPEPEVLEYVAEDLPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYSLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|422876543|ref|ZP_16923013.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1056]
gi|332361351|gb|EGJ39155.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1056]
Length = 298
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K GRI V+ ++ Y VK IS+ L EP V+ + + I+ ++ DV V K
Sbjct: 33 IKDGRILVNGQVKKAKYAVKEGDVISYELP--EPEVVEYVPEDIPLEIIYQDEDVAVVNK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 VALADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 PALTRFQVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|333904809|ref|YP_004478680.1| RNA pseudouridylate synthase [Streptococcus parauberis KCTC 11537]
gi|333120074|gb|AEF25008.1| RNA pseudouridylate synthase [Streptococcus parauberis KCTC 11537]
gi|456370694|gb|EMF49590.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
parauberis KRS-02109]
gi|457095660|gb|EMG26131.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
parauberis KRS-02083]
Length = 295
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 127/260 (48%), Gaps = 23/260 (8%)
Query: 67 FEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKI 126
E I K I DL E +G+ D A+K G + V+ + Y+VK+ I
Sbjct: 1 MELIIKEAGSRLDKAIADL-TELSRGQAND----AIKAGIVLVNGQAAKAKYSVKAGDII 55
Query: 127 SHFLHRHEP-PVMAWDV--SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHD 182
++ + E A D+ ++ ++ D+ + KP + VHP + T+V +L D
Sbjct: 56 TYEIQEEEVLDYQAEDIPLDVVYEDEDLAIINKPQGMVVHPSAGHSSGTMVNALLYQIKD 115
Query: 183 LAPL------FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEG 236
L+ + VHR+D+ SGLL++A+N + +++A K +++Y+A V+G P
Sbjct: 116 LSGINGVVRPGIVHRIDKDTSGLLMVAKNDAAHQALADELKAKKSLRKYLAIVHGNLPND 175
Query: 237 EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRT 296
+++ I GRS E +GK A T+F I G +++V TGRT
Sbjct: 176 RGIIEAPI------GRS--EKDRKKQAVIARGKEAVTRFQVIERFGDYTLVELTLETGRT 227
Query: 297 HQIRVHLQYTGYPIANDMLY 316
HQIRVH+ Y G+P+A D LY
Sbjct: 228 HQIRVHMAYIGHPVAGDPLY 247
>gi|421277207|ref|ZP_15728027.1| pseudouridine synthase [Streptococcus mitis SPAR10]
gi|395876488|gb|EJG87564.1| pseudouridine synthase [Streptococcus mitis SPAR10]
Length = 297
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ I++ + EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDMITYQIP--EPEVLEYVAEDIPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 MALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYSLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|417935378|ref|ZP_12578697.1| pseudouridine synthase, RluA family [Streptococcus mitis bv. 2 str.
F0392]
gi|340769871|gb|EGR92389.1| pseudouridine synthase, RluA family [Streptococcus mitis bv. 2 str.
F0392]
Length = 299
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ + YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGQAKKAKYTVQEGDIVTY--HVPEPEVLEYVAEDIPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYTLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|220908619|ref|YP_002483930.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 7425]
gi|219865230|gb|ACL45569.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7425]
Length = 303
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 123/249 (49%), Gaps = 14/249 (5%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHR 132
V R AG T++D +++ ++ + + ++ G+I ++ + P + +++ Q++++
Sbjct: 12 VDRRHAGLTLLDYYSQRYRHTSSAEWQTRIELGQIHLNGQPAPPTTRLQAGQQLTY---- 67
Query: 133 HEPPVMAWDVSI----LQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP 188
H PP +V + + + D+L + KP +PV P G + ++T++ LQ ++ P
Sbjct: 68 HRPPWPEPEVPLKFETIYSDADLLIISKPAGLPVLPGGGFLEHTLLWQLQQQYPQETPVP 127
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNA 248
+HRL R SGL+ILA + QQ+ + K Y A V G GE I+Y
Sbjct: 128 IHRLGRGTSGLMILAISGLAKSALSQQMRDQHIRKTYRALVGG----GEMPDRFTIDYPI 183
Query: 249 SAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGY 308
E G G TP G+ A ++ + +++ +TGR HQIR+HL GY
Sbjct: 184 GK-IPHPELGYVYGATP-TGRFAHSECQVLKRTPDRTLLAVTILTGRPHQIRIHLAAAGY 241
Query: 309 PIANDMLYL 317
P+ D LY+
Sbjct: 242 PLLGDPLYI 250
>gi|307127518|ref|YP_003879549.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae 670-6B]
gi|306484580|gb|ADM91449.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae 670-6B]
Length = 295
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ AS GRS + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIE------ASIGRSEKDRKKQA--VTAKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+ +A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHSVAGDEVY 247
>gi|227890010|ref|ZP_04007815.1| pseudouridylate synthase [Lactobacillus johnsonii ATCC 33200]
gi|227849454|gb|EEJ59540.1| pseudouridylate synthase [Lactobacillus johnsonii ATCC 33200]
Length = 304
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 117/225 (52%), Gaps = 28/225 (12%)
Query: 107 IQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTVCKPPS 159
I V+ + VSY V+S I + PPV + I+ ++ DV+ V KP
Sbjct: 41 ILVNNKAEKVSYKVQSGDVIDVTI----PPVKPLSLEAENLHLDIVYEDSDVIVVNKPQG 96
Query: 160 VPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADLF 212
+ VHP + +T+V G+L DLA P VHR+D+ SGLL++A+N +
Sbjct: 97 IVVHPSAGHPDHTLVNGLLYHTRDLADSPEGFRPGIVHRIDKDTSGLLMIAKNDRARESL 156
Query: 213 RQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q+ A K+ KR Y+A V+G F V++ I N + + A + KGKAA
Sbjct: 157 EKQL-AEKINKREYLAIVHGNFEVKNGVINAPIGRNPNNRKQMAVNP--------KGKAA 207
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T FT + +S+V C TGRTHQIRVH++Y G+P+A D LY
Sbjct: 208 VTHFTVLEQFKNYSLVKCVLETGRTHQIRVHMKYIGHPLAGDPLY 252
>gi|256959131|ref|ZP_05563302.1| pseudouridylate synthase [Enterococcus faecalis DS5]
gi|256949627|gb|EEU66259.1| pseudouridylate synthase [Enterococcus faecalis DS5]
Length = 301
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM---AWDV--SILQKEPDVLTVCK 156
+K + V+ E V +Y V + +I + EP V+ A D+ +I+ ++ DV+ V K
Sbjct: 35 LKEKHVTVNGETVRANYKVTAGDEI--VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNK 92
Query: 157 PPSVPVHPCGQYRKNTVVGIL--QAEH-----DLAPLFPVHRLDRLVSGLLILARNASKA 209
P + VHP + K T+V L A+H D+ VHR+D+ SGLL++A+N
Sbjct: 93 PQDMVVHPSAGHPKGTLVNALLHHADHLSAINDVVRPGIVHRIDKDTSGLLMVAKNDQAH 152
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ +Q++ +++Y+A V+GV P + + NA GRS + + GK
Sbjct: 153 ESLAKQLKEKTSLRKYVALVHGVIPHDKGEI------NAPIGRSKVDR--KMQAVIEGGK 204
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T FT + ++V + TGRTHQIRVH++Y GYP+A D LY
Sbjct: 205 EAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKYIGYPLAGDPLY 251
>gi|422708626|ref|ZP_16766154.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0027]
gi|315037134|gb|EFT49066.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0027]
Length = 310
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 120/229 (52%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM---AWDV--SILQKEPDVLTVCK 156
+K + V+ E V +Y V + +I + EP V+ A D+ +I+ ++ DV+ V K
Sbjct: 44 LKEKHVTVNGETVRANYKVTAGDEI--VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNK 101
Query: 157 PPSVPVHPCGQYRKNTVVGIL--QAEH-----DLAPLFPVHRLDRLVSGLLILARNASKA 209
P + VHP + K T+V L A+H D+ VHR+D+ SGLL++A+N
Sbjct: 102 PQDMVVHPSAGHPKGTLVNALLHHADHLSAINDVVRPGIVHRIDKDTSGLLMVAKNDQAH 161
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFP--EGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ +Q++ +++Y+A V+GV P +GE NA GRS + +
Sbjct: 162 ESLAKQLKEKTSLRKYVALVHGVIPHDKGE--------INAPIGRSKVDR--KMQAVIEG 211
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + ++V + TGRTHQIRVH++Y GYP+A D LY
Sbjct: 212 GKEAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKYIGYPLAGDPLY 260
>gi|227518911|ref|ZP_03948960.1| pseudouridylate synthase [Enterococcus faecalis TX0104]
gi|229549858|ref|ZP_04438583.1| pseudouridylate synthase [Enterococcus faecalis ATCC 29200]
gi|293383481|ref|ZP_06629394.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis R712]
gi|293388864|ref|ZP_06633350.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis S613]
gi|307269533|ref|ZP_07550872.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4248]
gi|307277912|ref|ZP_07558996.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0860]
gi|307289260|ref|ZP_07569216.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0109]
gi|312901873|ref|ZP_07761138.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0470]
gi|312907690|ref|ZP_07766681.1| pseudouridine synthase, RluA family [Enterococcus faecalis DAPTO
512]
gi|312910308|ref|ZP_07769155.1| pseudouridine synthase, RluA family [Enterococcus faecalis DAPTO
516]
gi|312951652|ref|ZP_07770547.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0102]
gi|384513397|ref|YP_005708490.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis OG1RF]
gi|422692868|ref|ZP_16750883.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0031]
gi|422699060|ref|ZP_16756933.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1346]
gi|422701912|ref|ZP_16759752.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1342]
gi|422704628|ref|ZP_16762438.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1302]
gi|422706513|ref|ZP_16764211.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0043]
gi|422714465|ref|ZP_16771191.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0309A]
gi|422715722|ref|ZP_16772438.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0309B]
gi|422727205|ref|ZP_16783648.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0312]
gi|422731593|ref|ZP_16787951.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0645]
gi|422869198|ref|ZP_16915718.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1467]
gi|424676609|ref|ZP_18113480.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV103]
gi|424681575|ref|ZP_18118362.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV116]
gi|424683765|ref|ZP_18120515.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV129]
gi|424686331|ref|ZP_18122999.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV25]
gi|424690397|ref|ZP_18126932.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV31]
gi|424695490|ref|ZP_18131873.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV37]
gi|424696771|ref|ZP_18133112.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV41]
gi|424699843|ref|ZP_18136054.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV62]
gi|424703143|ref|ZP_18139277.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV63]
gi|424707360|ref|ZP_18143344.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV65]
gi|424716980|ref|ZP_18146278.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV68]
gi|424720558|ref|ZP_18149659.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV72]
gi|424724107|ref|ZP_18153056.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV73]
gi|424733698|ref|ZP_18162253.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV81]
gi|424744003|ref|ZP_18172308.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV85]
gi|424750489|ref|ZP_18178553.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV93]
gi|227073600|gb|EEI11563.1| pseudouridylate synthase [Enterococcus faecalis TX0104]
gi|229305127|gb|EEN71123.1| pseudouridylate synthase [Enterococcus faecalis ATCC 29200]
gi|291079272|gb|EFE16636.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis R712]
gi|291081789|gb|EFE18752.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis S613]
gi|306499969|gb|EFM69330.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0109]
gi|306505309|gb|EFM74495.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0860]
gi|306514153|gb|EFM82729.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4248]
gi|310626718|gb|EFQ10001.1| pseudouridine synthase, RluA family [Enterococcus faecalis DAPTO
512]
gi|310630369|gb|EFQ13652.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0102]
gi|311289581|gb|EFQ68137.1| pseudouridine synthase, RluA family [Enterococcus faecalis DAPTO
516]
gi|311291066|gb|EFQ69622.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0470]
gi|315152327|gb|EFT96343.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0031]
gi|315156128|gb|EFU00145.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0043]
gi|315158230|gb|EFU02247.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0312]
gi|315162361|gb|EFU06378.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0645]
gi|315163874|gb|EFU07891.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1302]
gi|315169613|gb|EFU13630.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1342]
gi|315172438|gb|EFU16455.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1346]
gi|315576067|gb|EFU88258.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0309B]
gi|315580642|gb|EFU92833.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0309A]
gi|327535286|gb|AEA94120.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis OG1RF]
gi|329571882|gb|EGG53560.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1467]
gi|402350674|gb|EJU85572.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV116]
gi|402356621|gb|EJU91352.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV103]
gi|402364130|gb|EJU98573.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV129]
gi|402364240|gb|EJU98682.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV31]
gi|402367865|gb|EJV02202.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV25]
gi|402368185|gb|EJV02505.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV37]
gi|402375342|gb|EJV09329.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV62]
gi|402377100|gb|EJV11011.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV41]
gi|402384958|gb|EJV18499.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV65]
gi|402385148|gb|EJV18688.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV63]
gi|402386328|gb|EJV19834.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV68]
gi|402391311|gb|EJV24622.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV81]
gi|402393029|gb|EJV26259.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV72]
gi|402395918|gb|EJV28995.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV73]
gi|402399426|gb|EJV32298.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV85]
gi|402406788|gb|EJV39334.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV93]
Length = 310
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 120/229 (52%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM---AWDV--SILQKEPDVLTVCK 156
+K + V+ E V +Y V + +I + EP V+ A D+ +I+ ++ DV+ V K
Sbjct: 44 LKEKHVTVNGETVRANYKVTAGDEI--VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNK 101
Query: 157 PPSVPVHPCGQYRKNTVVGIL--QAEH-----DLAPLFPVHRLDRLVSGLLILARNASKA 209
P + VHP + K T+V L A+H D+ VHR+D+ SGLL++A+N
Sbjct: 102 PQGMVVHPSAGHPKGTLVNALLHHADHLSAINDVVRPGIVHRIDKDTSGLLMVAKNDQAH 161
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFP--EGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ +Q++ +++Y+A V+GV P +GE NA GRS + +
Sbjct: 162 ESLAKQLKEKTSLRKYVALVHGVIPHDKGE--------INAPIGRSKVDR--KMQAVIEG 211
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + ++V + TGRTHQIRVH++Y GYP+A D LY
Sbjct: 212 GKEAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKYIGYPLAGDPLY 260
>gi|257090036|ref|ZP_05584397.1| pseudouridylate synthase [Enterococcus faecalis CH188]
gi|256998848|gb|EEU85368.1| pseudouridylate synthase [Enterococcus faecalis CH188]
Length = 301
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM---AWDV--SILQKEPDVLTVCK 156
+K + V+ E V +Y V + +I + EP V+ A D+ +I+ ++ DV+ V K
Sbjct: 35 LKEKHVTVNGETVRANYKVTAGDEI--VVTIPEPEVLDMIAEDIPLTIVYEDNDVIVVNK 92
Query: 157 PPSVPVHPCGQYRKNTVVGIL--QAEH-----DLAPLFPVHRLDRLVSGLLILARNASKA 209
P + VHP + K T+V L A+H D+ VHR+D+ SGLL++A+N
Sbjct: 93 PQGMVVHPSAGHPKGTLVNALLHHADHLSAINDVVRPGIVHRIDKDTSGLLMVAKNDQAH 152
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ +Q++ +++Y+A V+GV P + + NA GRS + + GK
Sbjct: 153 ESLAKQLKEKTSLRKYVALVHGVIPHDKGEI------NAPIGRSKVDR--KMQAVIEGGK 204
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T FT + ++V + TGRTHQIRVH++Y GYP+A D LY
Sbjct: 205 EAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKYIGYPLAGDPLY 251
>gi|77358713|ref|YP_338279.1| ribosomal large subunit pseudouridine synthase C [Coxiella burnetii
RSA 493]
gi|161830459|ref|YP_001596417.1| ribosomal large subunit pseudouridine synthase C [Coxiella burnetii
RSA 331]
gi|212213029|ref|YP_002303965.1| ribosomal large subunit pseudouridine synthase C [Coxiella burnetii
CbuG_Q212]
gi|71066703|gb|AAZ22625.1| ribosomal large subunit pseudouridine synthase C [Coxiella burnetii
RSA 493]
gi|161762326|gb|ABX77968.1| ribosomal large subunit pseudouridine synthase C [Coxiella burnetii
RSA 331]
gi|212011439|gb|ACJ18820.1| ribosomal large subunit pseudouridine synthase C [Coxiella burnetii
CbuG_Q212]
Length = 308
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 116/255 (45%), Gaps = 28/255 (10%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
AG+ + + KG P A++ G ++V++ V Y + + PPV
Sbjct: 13 AGQRLDNFLITRLKGVPSTRIYRAIRKGEVRVNKRRVGADYRLVVGDLV------RIPPV 66
Query: 138 ----------------MAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH 181
++ ++ IL +E D+L + KP +PVH + + +
Sbjct: 67 QMAAPKKPATVDEKLLISLEMRILYEEADLLVIDKPAGLPVHGGSGIQGGVIEALRIMRP 126
Query: 182 DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
+ L VHRLDR SG L++A+ S + KVIK+Y+ V G + GE V+
Sbjct: 127 KVRLLELVHRLDRETSGCLMVAKKRSTLVALHTLLTQRKVIKQYLLLVKGQWQGGECRVE 186
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
V + N +SG+ + +GK+A T F + S++ +P+TGRTHQIRV
Sbjct: 187 VPLKKN------RLQSGERMVKVEKEGKSAVTVFRPLKIFEQASLIEAKPLTGRTHQIRV 240
Query: 302 HLQYTGYPIANDMLY 316
H + GYPIA D Y
Sbjct: 241 HAAHLGYPIAGDEKY 255
>gi|227553528|ref|ZP_03983577.1| pseudouridylate synthase [Enterococcus faecalis HH22]
gi|255972642|ref|ZP_05423228.1| pseudouridylate synthase [Enterococcus faecalis T1]
gi|255975694|ref|ZP_05426280.1| pseudouridylate synthase [Enterococcus faecalis T2]
gi|256762651|ref|ZP_05503231.1| pseudouridylate synthase [Enterococcus faecalis T3]
gi|256961775|ref|ZP_05565946.1| pseudouridylate synthase [Enterococcus faecalis Merz96]
gi|257079163|ref|ZP_05573524.1| pseudouridylate synthase [Enterococcus faecalis JH1]
gi|257085033|ref|ZP_05579394.1| pseudouridylate synthase [Enterococcus faecalis Fly1]
gi|257419447|ref|ZP_05596441.1| pseudouridylate synthase [Enterococcus faecalis T11]
gi|257422461|ref|ZP_05599451.1| pseudouridylate synthase [Enterococcus faecalis X98]
gi|294779380|ref|ZP_06744781.1| pseudouridine synthase, RluA family [Enterococcus faecalis PC1.1]
gi|384518748|ref|YP_005706053.1| RluA family pseudouridine synthase [Enterococcus faecalis 62]
gi|397700031|ref|YP_006537819.1| pseudouridine synthase, RluA family protein [Enterococcus faecalis
D32]
gi|430361833|ref|ZP_19426910.1| pseudouridylate synthase [Enterococcus faecalis OG1X]
gi|430368433|ref|ZP_19428174.1| pseudouridylate synthase [Enterococcus faecalis M7]
gi|227177333|gb|EEI58305.1| pseudouridylate synthase [Enterococcus faecalis HH22]
gi|255963660|gb|EET96136.1| pseudouridylate synthase [Enterococcus faecalis T1]
gi|255968566|gb|EET99188.1| pseudouridylate synthase [Enterococcus faecalis T2]
gi|256683902|gb|EEU23597.1| pseudouridylate synthase [Enterococcus faecalis T3]
gi|256952271|gb|EEU68903.1| pseudouridylate synthase [Enterococcus faecalis Merz96]
gi|256987193|gb|EEU74495.1| pseudouridylate synthase [Enterococcus faecalis JH1]
gi|256993063|gb|EEU80365.1| pseudouridylate synthase [Enterococcus faecalis Fly1]
gi|257161275|gb|EEU91235.1| pseudouridylate synthase [Enterococcus faecalis T11]
gi|257164285|gb|EEU94245.1| pseudouridylate synthase [Enterococcus faecalis X98]
gi|294453509|gb|EFG21910.1| pseudouridine synthase, RluA family [Enterococcus faecalis PC1.1]
gi|323480881|gb|ADX80320.1| pseudouridine synthase, RluA family protein [Enterococcus faecalis
62]
gi|397336670|gb|AFO44342.1| pseudouridine synthase, RluA family protein [Enterococcus faecalis
D32]
gi|429512386|gb|ELA01994.1| pseudouridylate synthase [Enterococcus faecalis OG1X]
gi|429516189|gb|ELA05683.1| pseudouridylate synthase [Enterococcus faecalis M7]
Length = 301
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 120/229 (52%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM---AWDV--SILQKEPDVLTVCK 156
+K + V+ E V +Y V + +I + EP V+ A D+ +I+ ++ DV+ V K
Sbjct: 35 LKEKHVTVNGETVRANYKVTAGDEI--VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNK 92
Query: 157 PPSVPVHPCGQYRKNTVVGIL--QAEH-----DLAPLFPVHRLDRLVSGLLILARNASKA 209
P + VHP + K T+V L A+H D+ VHR+D+ SGLL++A+N
Sbjct: 93 PQGMVVHPSAGHPKGTLVNALLHHADHLSAINDVVRPGIVHRIDKDTSGLLMVAKNDQAH 152
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFP--EGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ +Q++ +++Y+A V+GV P +GE NA GRS + +
Sbjct: 153 ESLAKQLKEKTSLRKYVALVHGVIPHDKGE--------INAPIGRSKVDR--KMQAVIEG 202
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + ++V + TGRTHQIRVH++Y GYP+A D LY
Sbjct: 203 GKEAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKYIGYPLAGDPLY 251
>gi|312903470|ref|ZP_07762650.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0635]
gi|422689213|ref|ZP_16747325.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0630]
gi|310633346|gb|EFQ16629.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0635]
gi|315577834|gb|EFU90025.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0630]
Length = 310
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 120/229 (52%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM---AWDV--SILQKEPDVLTVCK 156
+K + V+ E V +Y V + +I + EP V+ A D+ +I+ ++ DV+ V K
Sbjct: 44 LKEKHVTVNGETVRANYKVTAGDEI--VVTIPEPEVLDMIAEDIPLTIVYEDNDVIVVNK 101
Query: 157 PPSVPVHPCGQYRKNTVVGIL--QAEH-----DLAPLFPVHRLDRLVSGLLILARNASKA 209
P + VHP + K T+V L A+H D+ VHR+D+ SGLL++A+N
Sbjct: 102 PQGMVVHPSAGHPKGTLVNALLHHADHLSAINDVVRPGIVHRIDKDTSGLLMVAKNDQAH 161
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFP--EGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ +Q++ +++Y+A V+GV P +GE NA GRS + +
Sbjct: 162 ESLAKQLKEKTSLRKYVALVHGVIPHDKGE--------INAPIGRSKVDR--KMQAVIEG 211
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + ++V + TGRTHQIRVH++Y GYP+A D LY
Sbjct: 212 GKEAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKYIGYPLAGDPLY 260
>gi|42519111|ref|NP_965041.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii NCC 533]
gi|41583398|gb|AAS09007.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii NCC 533]
Length = 304
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 117/225 (52%), Gaps = 28/225 (12%)
Query: 107 IQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTVCKPPS 159
I V+ + VSY V+S I + PPV + I+ ++ DV+ V KP
Sbjct: 41 ILVNNKAEKVSYKVQSGDVIDVTI----PPVKPLSLEAENLHLDIVYEDSDVIVVNKPQG 96
Query: 160 VPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADLF 212
+ VHP + +T+V G+L DLA P VHR+D+ SGLL++A+N +
Sbjct: 97 MVVHPSAGHPDHTLVNGLLYHTRDLADSPEGFRPGIVHRIDKDTSGLLMIAKNDKARESL 156
Query: 213 RQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q+ A K+ KR Y+A V+G F V++ I N + + A + KGKAA
Sbjct: 157 EKQL-AEKINKREYLAIVHGNFEVKNGVINAPIGRNPNNRKQMAVNP--------KGKAA 207
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T FT + +S+V C TGRTHQIRVH++Y G+P+A D LY
Sbjct: 208 VTHFTVLEQFKNYSLVKCVLETGRTHQIRVHMKYIGHPLAGDPLY 252
>gi|406576385|ref|ZP_11052014.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD6S]
gi|404461392|gb|EKA07323.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD6S]
Length = 299
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ + YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGLVKKAKYTVQEGDIVTY--HVPEPEVLEYVAEDIPLDIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|385825909|ref|YP_005862251.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii DPC 6026]
gi|329667353|gb|AEB93301.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii DPC 6026]
Length = 304
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 117/225 (52%), Gaps = 28/225 (12%)
Query: 107 IQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTVCKPPS 159
I V+ + VSY V+S I + PPV + I+ ++ DV+ V KP
Sbjct: 41 ILVNNKAEKVSYKVQSGDVIDVTI----PPVKPLSLEAENLHLDIVYEDSDVIVVNKPQG 96
Query: 160 VPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADLF 212
+ VHP + +T+V G+L DLA P VHR+D+ SGLL++A+N +
Sbjct: 97 MVVHPSAGHPDHTLVNGLLYHTRDLADSPEGFRPGIVHRIDKDTSGLLMIAKNDKARESL 156
Query: 213 RQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q+ A K+ KR Y+A V+G F V++ I N + + A + KGKAA
Sbjct: 157 EKQL-AEKINKREYLAIVHGNFEVKNGVINAPIGRNPNNRKQMAVNP--------KGKAA 207
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T FT + +S+V C TGRTHQIRVH++Y G+P+A D LY
Sbjct: 208 VTHFTVLEQFKNYSLVKCVLETGRTHQIRVHMKYIGHPLAGDPLY 252
>gi|296123212|ref|YP_003630990.1| RluA family pseudouridine synthase [Planctomyces limnophilus DSM
3776]
gi|296015552|gb|ADG68791.1| pseudouridine synthase, RluA family [Planctomyces limnophilus DSM
3776]
Length = 623
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 122/258 (47%), Gaps = 13/258 (5%)
Query: 64 PYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSY--TVK 121
PY + V + AG T+ + + + SA GR+ + E P+ TV+
Sbjct: 324 PYVNDRPLQVSQKHAGLTVREFLQQVLPHLEASLWESAESEGRL-LSETFAPMRLDETVQ 382
Query: 122 SSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH 181
Q+I H L P + D+ L ++ ++ + KP +PVH G++ +NT+ +L +
Sbjct: 383 PGQRIIHRLPGTLEPAVNADIRWLYEDESIVVINKPAPLPVHASGRFHRNTLQYLLAQIY 442
Query: 182 DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
D HRLD + +G+L+L+R A + Q +V K Y+ARV G E+ +
Sbjct: 443 DPQSPRAAHRLDAMTTGVLVLSRTRHMAGRLQPQFSRREVEKVYLARVQG--EPAEESFE 500
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRIS--TNGTHSIVLCEPITGRTHQI 299
+ AG + D G G A T F + +GT S++ PITGRT+QI
Sbjct: 501 CHAPMTDVAGVMGSRDIDESG-----GVEASTLFRLVQRLEDGT-SLLEVRPITGRTNQI 554
Query: 300 RVHLQYTGYPIANDMLYL 317
RVHL + G PI D LYL
Sbjct: 555 RVHLWHLGLPILGDPLYL 572
>gi|417837540|ref|ZP_12483778.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii pf01]
gi|338761083|gb|EGP12352.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii pf01]
Length = 304
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 117/225 (52%), Gaps = 28/225 (12%)
Query: 107 IQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTVCKPPS 159
I V+ + VSY V+S I + PPV + I+ ++ DV+ V KP
Sbjct: 41 ILVNNKAEKVSYKVQSGDVIDVTI----PPVKPLSLEAENLHLDIVYEDSDVIVVNKPQG 96
Query: 160 VPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADLF 212
+ VHP + +T+V G+L DLA P VHR+D+ SGLL++A+N +
Sbjct: 97 MVVHPSAGHPDHTLVNGLLYHTRDLADSPERFRPGIVHRIDKDTSGLLMIAKNDKARESL 156
Query: 213 RQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q+ A K+ KR Y+A V+G F V++ I N + + A + KGKAA
Sbjct: 157 EKQL-AEKINKREYLAIVHGNFEVKNGVINAPIGRNPNNRKQMAVNP--------KGKAA 207
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T FT + +S+V C TGRTHQIRVH++Y G+P+A D LY
Sbjct: 208 VTHFTVLEQFKNYSLVKCVLETGRTHQIRVHMKYIGHPLAGDPLY 252
>gi|406027009|ref|YP_006725841.1| pseudouridine synthase D [Lactobacillus buchneri CD034]
gi|405125498|gb|AFS00259.1| pseudouridine synthase D [Lactobacillus buchneri CD034]
Length = 302
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 21/221 (9%)
Query: 107 IQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCKPPSVP 161
++V+ E V Y VKS KI + +P ++ + + I+ ++ DV+ V KP +
Sbjct: 38 LKVNGEPVKPKYQVKSGDKIQ--VDSVQPTPISLEPENIPLDIVYEDDDVIVVNKPQGMV 95
Query: 162 VHPCGQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADLFRQQ 215
VHP + +T+V L L+ + VHR+D+ SGLL++A+N QQ
Sbjct: 96 VHPSPGHPDHTLVNALLYHSPLSTINGEFRPGIVHRIDKDTSGLLMVAKNDKAHQFLSQQ 155
Query: 216 IEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKF 275
++A K +++Y+A V+G E VV+ I + + A D G++A T F
Sbjct: 156 LKAQKNLRKYVALVHGRIKEDSGVVNAPIGRSPKDRKKQAVVSD--------GRSAVTHF 207
Query: 276 TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ +++V C TGRTHQIRVH++Y G+PI D LY
Sbjct: 208 EVLERFADYTLVACRLETGRTHQIRVHMKYIGHPIVGDPLY 248
>gi|331701446|ref|YP_004398405.1| RluA family pseudouridine synthase [Lactobacillus buchneri NRRL
B-30929]
gi|329128789|gb|AEB73342.1| pseudouridine synthase, RluA family [Lactobacillus buchneri NRRL
B-30929]
Length = 302
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 116/249 (46%), Gaps = 32/249 (12%)
Query: 75 NRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE-EMVPVSYTVKSSQKISHFLHRH 133
+R K ++D + G P +IQVD + P+S
Sbjct: 25 SRSRAKNLIDDQHLKINGEPVKPKYQVKSGDKIQVDSVQPTPISL--------------- 69
Query: 134 EPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL------F 187
EP M D I+ ++ DV+ V KP + VHP + +T+V L L+ +
Sbjct: 70 EPENMPLD--IVYEDDDVIVVNKPQGMVVHPSPGHPDHTLVNALLYHSPLSTINGEFRPG 127
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHR+D+ SGLL++A+N QQ++A K +++Y+A V+G E VV+ I +
Sbjct: 128 IVHRIDKDTSGLLMVAKNDKAHQFLSQQLQAQKNLRKYVALVHGRIKEDSGVVNAPIGRS 187
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTG 307
+ A D G++A T F + +++V C TGRTHQIRVH++Y G
Sbjct: 188 PKDRKKQAVVSD--------GRSAVTHFEVLERFADYTLVACRLETGRTHQIRVHMKYIG 239
Query: 308 YPIANDMLY 316
+PI D LY
Sbjct: 240 HPIVGDPLY 248
>gi|329116866|ref|ZP_08245583.1| pseudouridine synthase, RluA family [Streptococcus parauberis NCFD
2020]
gi|326907271|gb|EGE54185.1| pseudouridine synthase, RluA family [Streptococcus parauberis NCFD
2020]
Length = 295
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 127/260 (48%), Gaps = 23/260 (8%)
Query: 67 FEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKI 126
E I K I DL E +G+ D A+K G + V+ + Y+VK+ I
Sbjct: 1 MELIIKEAGSRLDKAIADL-TELSRGQAND----AIKAGIVLVNGQAAKAKYSVKAGDII 55
Query: 127 SHFLHRHEP-PVMAWDV--SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHD 182
++ + E A D+ ++ ++ D+ + KP + VHP + T+V +L D
Sbjct: 56 TYEIQEEEVLDYQAEDIPLDVVYEDEDLAIINKPQGMVVHPSAGHSSGTMVNALLYQIKD 115
Query: 183 LAPL------FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEG 236
L+ + VHR+D+ SGLL++A+N + +++A K +++Y+A V+G P
Sbjct: 116 LSGINGVVRPGIVHRIDKDTSGLLMVAKNDAAHRALADELKAKKSLRKYLAIVHGNLPND 175
Query: 237 EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRT 296
+++ I GRS E +GK A T+F I G +++V TGRT
Sbjct: 176 RGIIEAPI------GRS--EKDRKKQAVIARGKEAVTRFQVIERFGDYTLVELTLETGRT 227
Query: 297 HQIRVHLQYTGYPIANDMLY 316
HQIRVH+ Y G+P+A D LY
Sbjct: 228 HQIRVHMAYIGHPVAGDPLY 247
>gi|345864266|ref|ZP_08816469.1| ribosomal large subunit pseudouridine synthase C [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345879008|ref|ZP_08830693.1| Nod factor export ATP-binding protein I [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344223985|gb|EGV50403.1| Nod factor export ATP-binding protein I [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|345124626|gb|EGW54503.1| ribosomal large subunit pseudouridine synthase C [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 317
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 115/252 (45%), Gaps = 24/252 (9%)
Query: 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRHE 134
G+ I + E KG P Y ++ G ++V+ V Y +K ++
Sbjct: 22 GQRIDNFLLRELKGAPRSYIYRILRKGEVRVNRGRVKADYRLKLGDQVRIPPVRLAASPA 81
Query: 135 PPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP--- 185
PP + + SIL ++ ++ + KP + VH G+++A L P
Sbjct: 82 PPRFSREQRERLERSILFEDERIMVINKPAGMAVHGGS----GLSFGVIEALRALRPEER 137
Query: 186 -LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI 244
L VHRLDR SG L+L++ S + ++ V KRY+A + G + +G Q VD +
Sbjct: 138 SLELVHRLDRDTSGCLLLSKRRSALRSLHELMQKNLVDKRYLALLAGSWRKGRQEVDAPL 197
Query: 245 NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
N T + G+ + GK + T+FTR+ ++V E +TGRTHQIRVH
Sbjct: 198 LKN------TLKGGERVVRVDAAGKPSLTRFTRVRRFKQATLVEAELVTGRTHQIRVHSA 251
Query: 305 YTGYPIANDMLY 316
+ G PI D Y
Sbjct: 252 WLGSPILGDTRY 263
>gi|154707769|ref|YP_001424927.1| ribosomal large subunit pseudouridine synthase C [Coxiella burnetii
Dugway 5J108-111]
gi|161349250|ref|ZP_02096635.1| ribosomal large subunit pseudouridine synthase C [Coxiella burnetii
'MSU Goat Q177']
gi|165920598|ref|ZP_02219569.1| ribosomal large subunit pseudouridine synthase C [Coxiella burnetii
Q321]
gi|212218908|ref|YP_002305695.1| ribosomal large subunit pseudouridine synthase C [Coxiella burnetii
CbuK_Q154]
gi|154357055|gb|ABS78517.1| ribosomal large subunit pseudouridine synthase C [Coxiella burnetii
Dugway 5J108-111]
gi|164601538|gb|EDQ95142.1| ribosomal large subunit pseudouridine synthase C [Coxiella burnetii
'MSU Goat Q177']
gi|165916800|gb|EDR35404.1| ribosomal large subunit pseudouridine synthase C [Coxiella burnetii
Q321]
gi|212013170|gb|ACJ20550.1| ribosomal large subunit pseudouridine synthase C [Coxiella burnetii
CbuK_Q154]
Length = 308
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 116/255 (45%), Gaps = 28/255 (10%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
AG+ + + KG P A++ G ++V++ V Y + + PPV
Sbjct: 13 AGQRLDNFLITRLKGVPSTRIYRAIRKGEVRVNKRRVGADYRLVVGDLV------RIPPV 66
Query: 138 ----------------MAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH 181
++ ++ IL +E D+L + KP +PVH + + +
Sbjct: 67 QMAAPKKPATVDEKLLISLEMRILYEEADLLVIDKPAGLPVHGGSGIQGGLIEALRIMRP 126
Query: 182 DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
+ L VHRLDR SG L++A+ S + KVIK+Y+ V G + GE V+
Sbjct: 127 KVRLLELVHRLDRETSGCLMVAKKRSTLVALHTLLTQRKVIKQYLLLVKGQWQGGECRVE 186
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
V + N +SG+ + +GK+A T F + S++ +P+TGRTHQIRV
Sbjct: 187 VPLKKN------RLQSGERMVKVEKEGKSAVTVFRPLKIFEQASLIEAKPLTGRTHQIRV 240
Query: 302 HLQYTGYPIANDMLY 316
H + GYPIA D Y
Sbjct: 241 HAAHLGYPIAGDEKY 255
>gi|359689391|ref|ZP_09259392.1| pseudouridylate synthase [Leptospira licerasiae serovar Varillal
str. MMD0835]
gi|418749968|ref|ZP_13306256.1| pseudouridine synthase, RluA family [Leptospira licerasiae str.
MMD4847]
gi|418759397|ref|ZP_13315577.1| pseudouridine synthase, RluA family [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|384113888|gb|EIE00153.1| pseudouridine synthase, RluA family [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|404274853|gb|EJZ42171.1| pseudouridine synthase, RluA family [Leptospira licerasiae str.
MMD4847]
Length = 299
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 105/222 (47%), Gaps = 11/222 (4%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKISHFL-HRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVH 163
G+I V + V SY +K +I + EPPV D IL ++ + V KP +P+H
Sbjct: 22 GKILVQGKPVKPSYPIKEGDEILYLPGESFEPPVQT-DFKILYEDSRYIAVEKPGDIPIH 80
Query: 164 PCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIK 223
G+YRKN + +L+ + ++ +HRLDR SG+++ +++ A KV K
Sbjct: 81 SAGRYRKNNLTDLLEEDPRFEKIYTIHRLDRETSGVVVFGKDSEAASRMADLFSKRKVNK 140
Query: 224 RYIARVNGVFPEGEQVVDVNINYNASAGRST----AESGDSLGDTPLK-GKAACTKFTRI 278
YI+ V G FP ++ +S R AE +TP + + + T F +I
Sbjct: 141 TYISYVWGNFPTRLSAKGFLVSDTSSLIRKKRKFLAEGSFQKLETPDENSETSETNFRKI 200
Query: 279 STNGTHSI----VLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
H I + C P TGR HQIR L G+P+ D +Y
Sbjct: 201 GEGKLHGIPFSKIYCFPKTGRLHQIRATLYSLGFPLLGDKIY 242
>gi|401683612|ref|ZP_10815498.1| pseudouridine synthase, RluA family [Streptococcus sp. BS35b]
gi|400187690|gb|EJO21884.1| pseudouridine synthase, RluA family [Streptococcus sp. BS35b]
Length = 299
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ + YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGQAKKAKYTVQEGDIVTY--HVPEPEVLEYVAENLPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + HP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVAHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|323351668|ref|ZP_08087322.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis VMC66]
gi|322122154|gb|EFX93880.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis VMC66]
Length = 298
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K GRI V+ + Y VK IS+ L EP V+ + + I+ ++ DV + K
Sbjct: 33 IKDGRILVNGQAKKAKYAVKEGDVISYELP--EPEVVEYVAEDIPLEIVYQDEDVAVINK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHIQDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 VALADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 PALTRFQVLERFGNYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|294954492|ref|XP_002788195.1| RNA pseudouridylate synthase, putative [Perkinsus marinus ATCC
50983]
gi|239903410|gb|EER19991.1| RNA pseudouridylate synthase, putative [Perkinsus marinus ATCC
50983]
Length = 309
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 35/241 (14%)
Query: 114 VPVSYTVKSSQKISHFLHRHEPPV-MAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT 172
V + + ++ ++ + H +E PV ++ I+ + DV+ V KP +PVH G +R N
Sbjct: 8 VELDHVLQGNELLIHETIVNENPVPFDGELKIVGETDDVVAVDKPSGMPVHSGGGHRVNC 67
Query: 173 VVGILQAE----HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEA--GKVIKRYI 226
+ IL+ + LA + +HRLDRL SG++IL +N A F + + ++ K Y+
Sbjct: 68 LSAILKEQDPSRFSLA-IHTLHRLDRLTSGIVILGKNPDVARAFSEAFKKHDQEIQKCYL 126
Query: 227 ARVNGVFPEGEQVVD-------------VNINYNASAGRSTAESGDSLGDTP-------- 265
ARV G F VV+ + +N N A GD+ TP
Sbjct: 127 ARVKGKFEGSNVVVEGFMRCVDFRVGKFILVNSNKGTASEDANQGDAPTSTPSGDDKSAV 186
Query: 266 ----LKGKAACTKFTRI--STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCE 319
++ K + T F ++ +I+ C P TGRTHQIRVHL+ G+PIAND Y E
Sbjct: 187 EEDHIEDKWSQTSFDKVWYDEQNDETIIKCYPKTGRTHQIRVHLESIGHPIANDSCYGGE 246
Query: 320 H 320
+
Sbjct: 247 Y 247
>gi|401683181|ref|ZP_10815070.1| pseudouridine synthase, RluA family [Streptococcus sp. AS14]
gi|400183863|gb|EJO18114.1| pseudouridine synthase, RluA family [Streptococcus sp. AS14]
Length = 298
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K GRI V+ + Y VK IS+ L EP V+ + + I+ ++ DV V K
Sbjct: 33 IKDGRILVNGQAKKAKYAVKEGDIISYELP--EPEVVEYVAEDIPLEIVYQDEDVAVVNK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L +DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHINDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 VALADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 PALTRFQVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|295110320|emb|CBL24273.1| pseudouridine synthase, RluA family [Ruminococcus obeum A2-162]
Length = 293
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 97/186 (52%), Gaps = 18/186 (9%)
Query: 138 MAWDVSILQKEPDVLTVCKPPSVPVHP-CGQYRK---NTVVGILQAEHDLAPLFPVHRLD 193
++ +SIL ++ D+L + KP +PVHP G Y N V L A+ + +P ++RLD
Sbjct: 77 VSMPLSILYEDEDILVINKPADMPVHPSIGNYTNTLANGVAAYLDAKDEHSPFRCINRLD 136
Query: 194 RLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRS 253
R SG LILA+NA A + Q+ ++ + Y+A V G+ P N +
Sbjct: 137 RDTSGALILAKNAFSAAVLSTQMRNRQIRRTYLAVVEGITPP-----------NGTISAP 185
Query: 254 TAESGDSLGDTP---LKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPI 310
+ DS+ + L+G+ A T + R+ HS++ TGRTHQIRVH+ Y G+P+
Sbjct: 186 ISRVDDSVIERHVDFLRGEPAVTHYERLEVKNEHSLLEIHLETGRTHQIRVHMGYIGHPL 245
Query: 311 ANDMLY 316
D LY
Sbjct: 246 PADYLY 251
>gi|125717901|ref|YP_001035034.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK36]
gi|422862703|ref|ZP_16909335.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK408]
gi|125497818|gb|ABN44484.1| Ribosomal large subunit pseudouridine synthase D, putative
[Streptococcus sanguinis SK36]
gi|327474176|gb|EGF19586.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK408]
Length = 298
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K GRI V+ + Y VK IS+ L EP V+ + + I+ ++ DV + K
Sbjct: 33 IKDGRILVNGQAKKAKYAVKEGDVISYELP--EPEVVEYVAEDIPLEIVYQDEDVAVINK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHIQDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 VALADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 PALTRFQVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|397687641|ref|YP_006524960.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri DSM 10701]
gi|395809197|gb|AFN78602.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri DSM 10701]
Length = 317
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 118/251 (47%), Gaps = 17/251 (6%)
Query: 77 WAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHR 132
+AG+ I + + KG P ++ G ++V++ + Y +++ + R
Sbjct: 20 FAGQRIDNFLRNQLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDLVRVPPLRLAER 79
Query: 133 HEPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
EP +A + +I+ ++ ++ + KP + VH + + Q D L
Sbjct: 80 DEPAPLAQGLLERLEAAIVYEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQLRPDAKEL 139
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SGLL++A+ S Q++ V KRY+A V G + G++ V +
Sbjct: 140 ELVHRLDRDTSGLLMVAKKRSMLRHLHQELRGDGVDKRYMALVRGRWETGKKQVSAPLLK 199
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
N T SG+ + + +GK A T F + G ++V P+TGRTHQIRVH ++
Sbjct: 200 N------TLRSGERMVEVTDEGKEALTLFRVLRRFGDFATLVEARPVTGRTHQIRVHARH 253
Query: 306 TGYPIANDMLY 316
G+ IA D Y
Sbjct: 254 AGHAIAGDSKY 264
>gi|315612946|ref|ZP_07887857.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis ATCC 49296]
gi|315315056|gb|EFU63097.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis ATCC 49296]
Length = 299
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ Y V+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKAGQVLVNGQVKKAKYIVQEGDIVAY--HVPEPEVLEYVAENLPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYSLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|157692226|ref|YP_001486688.1| pseudouridylate synthase [Bacillus pumilus SAFR-032]
gi|157680984|gb|ABV62128.1| pseudouridylate synthase [Bacillus pumilus SAFR-032]
Length = 304
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 21/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM-----AWDVSILQKEPDVLTVCK 156
VK G I+V+ + V +Y V++ +I + EP + A D+ I ++ DVL V K
Sbjct: 37 VKDGLIEVNGKQVKANYKVQAGDQIK--VEIPEPEALDVEAEAMDLDIYYEDADVLVVNK 94
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L A DL+ + VHR+D+ SGLL++A+N
Sbjct: 95 PRGMVVHPAPGHVSGTLVNGLMAHCTDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDMAH 154
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ Q+ A V ++Y A V+G+ +D I + +S + +S K
Sbjct: 155 ESLVNQLVAKTVTRKYTAVVHGIIQHDTGTIDAPIGRDKKDRQSMTVTKES-------SK 207
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F I ++V C TGRTHQIRVH++Y GYP+A D Y
Sbjct: 208 QAVTHFDVIERFDDFTVVECRLETGRTHQIRVHMKYIGYPLAGDPKY 254
>gi|168494358|ref|ZP_02718501.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae CDC3059-06]
gi|221231700|ref|YP_002510852.1| RNA pseudouridylate synthase [Streptococcus pneumoniae ATCC 700669]
gi|225854435|ref|YP_002735947.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae JJA]
gi|415698132|ref|ZP_11457043.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 459-5]
gi|415749329|ref|ZP_11477273.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SV35]
gi|415752013|ref|ZP_11479124.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SV36]
gi|418073711|ref|ZP_12710969.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11184]
gi|418076032|ref|ZP_12713271.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47502]
gi|418078419|ref|ZP_12715642.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 4027-06]
gi|418080384|ref|ZP_12717596.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 6735-05]
gi|418089321|ref|ZP_12726478.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA43265]
gi|418098298|ref|ZP_12735397.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 6901-05]
gi|418104985|ref|ZP_12742045.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44500]
gi|418114425|ref|ZP_12751415.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 5787-06]
gi|418116665|ref|ZP_12753637.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 6963-05]
gi|418123199|ref|ZP_12760133.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44378]
gi|418127786|ref|ZP_12764682.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP170]
gi|418134989|ref|ZP_12771846.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11426]
gi|418136960|ref|ZP_12773802.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11663]
gi|418173297|ref|ZP_12809911.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41277]
gi|418177958|ref|ZP_12814542.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41565]
gi|418216376|ref|ZP_12843100.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae Netherlands15B-37]
gi|419431322|ref|ZP_13971468.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP05]
gi|419433612|ref|ZP_13973730.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA40183]
gi|419440145|ref|ZP_13980197.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA40410]
gi|419464508|ref|ZP_14004401.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA04175]
gi|419468795|ref|ZP_14008666.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA06083]
gi|419472990|ref|ZP_14012841.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13430]
gi|419497109|ref|ZP_14036820.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47522]
gi|419534390|ref|ZP_14073893.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17457]
gi|421236073|ref|ZP_15692674.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2071004]
gi|421280915|ref|ZP_15731713.1| pseudouridine synthase [Streptococcus pneumoniae GA04672]
gi|421309365|ref|ZP_15759992.1| pseudouridine synthase [Streptococcus pneumoniae GA62681]
gi|183575636|gb|EDT96164.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae CDC3059-06]
gi|220674160|emb|CAR68683.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
ATCC 700669]
gi|225722558|gb|ACO18411.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae JJA]
gi|353747610|gb|EHD28266.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 4027-06]
gi|353749821|gb|EHD30464.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47502]
gi|353750558|gb|EHD31196.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11184]
gi|353752924|gb|EHD33548.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 6735-05]
gi|353762007|gb|EHD42570.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA43265]
gi|353769658|gb|EHD50174.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 6901-05]
gi|353779419|gb|EHD59885.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44500]
gi|353787167|gb|EHD67574.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 5787-06]
gi|353789887|gb|EHD70276.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 6963-05]
gi|353797286|gb|EHD77621.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44378]
gi|353800247|gb|EHD80561.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP170]
gi|353839996|gb|EHE20070.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41277]
gi|353844732|gb|EHE24775.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41565]
gi|353873427|gb|EHE53288.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae Netherlands15B-37]
gi|353901587|gb|EHE77119.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11663]
gi|353902226|gb|EHE77756.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11426]
gi|379539727|gb|EHZ04906.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA04175]
gi|379546898|gb|EHZ12036.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA06083]
gi|379552497|gb|EHZ17586.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13430]
gi|379565124|gb|EHZ30117.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17457]
gi|379576613|gb|EHZ41537.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA40183]
gi|379579912|gb|EHZ44808.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA40410]
gi|379601623|gb|EHZ66396.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47522]
gi|379632566|gb|EHZ97142.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP05]
gi|381309709|gb|EIC50542.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SV36]
gi|381317137|gb|EIC57867.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 459-5]
gi|381317623|gb|EIC58348.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SV35]
gi|395604992|gb|EJG65124.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2071004]
gi|395882076|gb|EJG93123.1| pseudouridine synthase [Streptococcus pneumoniae GA04672]
gi|395910786|gb|EJH21655.1| pseudouridine synthase [Streptococcus pneumoniae GA62681]
Length = 295
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LVLAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+ +A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHSVAGDEVY 247
>gi|419442415|ref|ZP_13982446.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13224]
gi|379554382|gb|EHZ19462.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13224]
Length = 295
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKGTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LVLAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+ +A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHSVAGDEVY 247
>gi|422846563|ref|ZP_16893246.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK72]
gi|325687371|gb|EGD29392.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK72]
Length = 298
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K GRI V+ ++ Y VK IS+ L EP V+ + + I+ ++ DV + K
Sbjct: 33 IKDGRILVNGQVKKAKYAVKEGDVISYELP--EPEVVEYVAEDIPLEIVYQDEDVAVINK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHIQDLSGINGVLRPGIVHRIDKDTSGLLMVAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 VALADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 PALTRFQVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|407005750|gb|EKE21798.1| hypothetical protein ACD_7C00125G0001 [uncultured bacterium]
Length = 316
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 131/278 (47%), Gaps = 27/278 (9%)
Query: 72 HVKNRWAGKTIVD--LFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHF 129
H N+ K + + L E G ++ A+K G+I V++++V SY KI
Sbjct: 8 HNANKRLDKILANFSLTEETLTGLSRGDFIRAIKEGKILVNDKIVKPSYKTALDDKIEIN 67
Query: 130 LHRHEPPVMAWD---VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAP 185
L + E +++ D + ++ K D L + KP + VHP ++NT+V G++ ++A
Sbjct: 68 LIKKEEILISNDKIKLDVIFKNDDFLVINKPAGIQVHPDFNEKENTIVNGLIATYPEIAK 127
Query: 186 LFP------------VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVF 233
L VHRLD+ SG+LI+A+N F+ + + K+Y+A G+
Sbjct: 128 LKDDHTYSFQSRPGIVHRLDKETSGILIIAKNIKSFLEFKTMFKEKTIAKKYLAISYGIP 187
Query: 234 PEGEQVVDVNINYNASAGRSTAESGDSLGD--TPLKGKAACTKFTRISTNGTH-SIVLCE 290
E + +D R+T ++ T K + A T + I G + S++
Sbjct: 188 LERKGTID------KPLARTTNYRKQTIAGKRTKTKIREALTNYEVIKDLGENFSLIEVS 241
Query: 291 PITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMS 328
P TGRTHQIRVHL G+PI D LY ++ EG +
Sbjct: 242 PQTGRTHQIRVHLSAIGHPIVGDNLYRKKNYEKFEGAT 279
>gi|256619215|ref|ZP_05476061.1| pseudouridylate synthase [Enterococcus faecalis ATCC 4200]
gi|256853277|ref|ZP_05558647.1| pseudouridylate synthase [Enterococcus faecalis T8]
gi|300860210|ref|ZP_07106297.1| pseudouridine synthase, RluA family [Enterococcus faecalis TUSoD
Ef11]
gi|428767158|ref|YP_007153269.1| pseudouridylate synthase, 23S rRNA-specific [Enterococcus faecalis
str. Symbioflor 1]
gi|256598742|gb|EEU17918.1| pseudouridylate synthase [Enterococcus faecalis ATCC 4200]
gi|256711736|gb|EEU26774.1| pseudouridylate synthase [Enterococcus faecalis T8]
gi|300849249|gb|EFK76999.1| pseudouridine synthase, RluA family [Enterococcus faecalis TUSoD
Ef11]
gi|427185331|emb|CCO72555.1| pseudouridylate synthase, 23S rRNA-specific [Enterococcus faecalis
str. Symbioflor 1]
Length = 301
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD---VSILQKEPDVLTVCKPP 158
+K + V+ E V +Y V + +I + E M + ++I+ ++ DV+ V KP
Sbjct: 35 LKEKHVTVNGETVRANYKVTAGDEIVVTIPEPEALDMVAEDIPLTIVYEDNDVIVVNKPQ 94
Query: 159 SVPVHPCGQYRKNTVVGIL--QAEH-----DLAPLFPVHRLDRLVSGLLILARNASKADL 211
+ VHP + K T+V L A+H D+ VHR+D+ SGLL++A+N +
Sbjct: 95 GMVVHPSAGHPKGTLVNALLHHADHLSAINDVVRPGIVHRIDKDTSGLLMVAKNDQAHES 154
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q++ +++Y+A V+GV P + + NA GRS + + GK A
Sbjct: 155 LAKQLKEKTSLRKYVALVHGVIPHDKGEI------NAPIGRSKVDR--KMQAVIEGGKEA 206
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T FT + ++V + TGRTHQIRVH++Y GYP+A D LY
Sbjct: 207 VTHFTVLERFDAFTLVELQLETGRTHQIRVHMKYIGYPLAGDPLY 251
>gi|257416242|ref|ZP_05593236.1| pseudouridylate synthase [Enterococcus faecalis ARO1/DG]
gi|257158070|gb|EEU88030.1| pseudouridylate synthase [Enterococcus faecalis ARO1/DG]
Length = 301
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM---AWDV--SILQKEPDVLTVCK 156
+K + V+ E V +Y V + +I + EP V+ A D+ +I+ ++ DV+ V K
Sbjct: 35 LKEKHVTVNGETVRANYKVTAGDEI--VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNK 92
Query: 157 PPSVPVHPCGQYRKNTVVGIL--QAEH-----DLAPLFPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L A+H D+ VHR+D+ SGLL++A++
Sbjct: 93 PQGMVVHPSAGHPNGTLVNALLHHADHLSAINDVVRPGIVHRIDKDTSGLLMVAKSDQAH 152
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFP--EGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ +Q++ +++Y+A V+GV P +GE NA GRS + +
Sbjct: 153 ESLAKQLKEKTSLRKYVALVHGVIPHDKGE--------INAPIGRSKVDR--KMQAVIEG 202
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + T ++V + TGRTHQIRVH++Y GYP+A D LY
Sbjct: 203 GKEAVTHFTVLERFDTFTLVELQLETGRTHQIRVHMKYIGYPLAGDTLY 251
>gi|229545666|ref|ZP_04434391.1| pseudouridylate synthase [Enterococcus faecalis TX1322]
gi|307275817|ref|ZP_07556956.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2134]
gi|307291840|ref|ZP_07571711.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0411]
gi|422685833|ref|ZP_16744046.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4000]
gi|422720764|ref|ZP_16777373.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0017]
gi|422734158|ref|ZP_16790452.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1341]
gi|422739157|ref|ZP_16794340.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2141]
gi|229309234|gb|EEN75221.1| pseudouridylate synthase [Enterococcus faecalis TX1322]
gi|306497106|gb|EFM66652.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0411]
gi|306507509|gb|EFM76640.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2134]
gi|315029545|gb|EFT41477.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4000]
gi|315032018|gb|EFT43950.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0017]
gi|315144961|gb|EFT88977.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2141]
gi|315168880|gb|EFU12897.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1341]
Length = 310
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD---VSILQKEPDVLTVCKPP 158
+K + V+ E V +Y V + +I + E M + ++I+ ++ DV+ V KP
Sbjct: 44 LKEKHVTVNGETVRANYKVTAGDEIVVTIPEPEALDMVAEDIPLTIVYEDNDVIVVNKPQ 103
Query: 159 SVPVHPCGQYRKNTVVGIL--QAEH-----DLAPLFPVHRLDRLVSGLLILARNASKADL 211
+ VHP + K T+V L A+H D+ VHR+D+ SGLL++A+N +
Sbjct: 104 GMVVHPSAGHPKGTLVNALLHHADHLSAINDVVRPGIVHRIDKDTSGLLMVAKNDQAHES 163
Query: 212 FRQQIEAGKVIKRYIARVNGVFP--EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+Q++ +++Y+A V+GV P +GE NA GRS + + GK
Sbjct: 164 LAKQLKEKTSLRKYVALVHGVIPHDKGE--------INAPIGRSKVDR--KMQAVIEGGK 213
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T FT + ++V + TGRTHQIRVH++Y GYP+A D LY
Sbjct: 214 EAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKYIGYPLAGDPLY 260
>gi|423522277|ref|ZP_17498750.1| RluA family pseudouridine synthase [Bacillus cereus HuA4-10]
gi|401174971|gb|EJQ82174.1| RluA family pseudouridine synthase [Bacillus cereus HuA4-10]
Length = 302
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 122/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + K + V+ + V V+Y VK + +I+ +
Sbjct: 10 AEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSVKVNYKVKENDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ + ++ DVL V KP + VHP + K T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A GR E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIGRDKKERQSMTVDE--NGKNAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|422823680|ref|ZP_16871868.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK405]
gi|422855614|ref|ZP_16902272.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1]
gi|324993007|gb|EGC24927.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK405]
gi|327462303|gb|EGF08630.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1]
Length = 298
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K GRI V+ + Y VK IS+ L EP V+ + + I+ ++ DV V K
Sbjct: 33 IKDGRILVNGQAKKAKYAVKEGDVISYELP--EPEVVEYVAEDIPLEIVYQDEDVAVVNK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L +DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHINDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 VALADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 PALTRFQVLERFGDYTLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|431926826|ref|YP_007239860.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri RCH2]
gi|431825113|gb|AGA86230.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri RCH2]
Length = 317
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 121/264 (45%), Gaps = 17/264 (6%)
Query: 70 ISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS-- 127
I V AG+ I + + KG P ++ G ++V++ + Y +++ +
Sbjct: 13 ILEVAPELAGQRIDNFLRNQLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDLVRVP 72
Query: 128 --HFLHRHEPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
R EP +A D +I+ ++ ++ + KP + VH + + Q
Sbjct: 73 PLRLAERDEPEPLAQGLLERLDKAIVYEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQL 132
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
D L VHRLDR SGLL++A+ S Q + V KRY+A V G + ++
Sbjct: 133 RPDAKELELVHRLDRDTSGLLMVAKKRSMLRHLHQALRGDGVDKRYMALVRGRWETSKKQ 192
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQ 298
V NA ++T SG+ + + GK A T F + G ++V +P+TGRTHQ
Sbjct: 193 V------NAPLLKNTLRSGERMVEVTEDGKEALTLFHVLRRFGEFATLVEAKPVTGRTHQ 246
Query: 299 IRVHLQYTGYPIANDMLYLCEHVT 322
IRVH ++ G+ IA D Y E T
Sbjct: 247 IRVHARHAGHSIAGDSKYGDEEFT 270
>gi|293376242|ref|ZP_06622485.1| pseudouridine synthase, RluA family [Turicibacter sanguinis PC909]
gi|325845167|ref|ZP_08168476.1| pseudouridine synthase, RluA family [Turicibacter sp. HGF1]
gi|292645134|gb|EFF63201.1| pseudouridine synthase, RluA family [Turicibacter sanguinis PC909]
gi|325488832|gb|EGC91232.1| pseudouridine synthase, RluA family [Turicibacter sp. HGF1]
Length = 302
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 120/256 (46%), Gaps = 22/256 (8%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHR 132
V G + + E F+ Y +K GR+ ++ ++ +Y + + +I ++
Sbjct: 8 VTEELVGVRLDKVLNESFEDYSRSYLQQLIKEGRVLINGQVAKANYKCRLNDQIE--INI 65
Query: 133 HEPPVM-----AWDVSILQKEPDVLTVCKPPSVPVHPC-GQYRKNTVVGILQAEHDLA-- 184
EP V+ D+ I+ ++ V+ V KP ++ VHP G V G++ DL+
Sbjct: 66 PEPEVLDVIPEEMDLDIVYQDDYVIVVNKPENMVVHPAPGSMSGTLVNGLMAQVTDLSGI 125
Query: 185 --PLFP--VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVV 240
L P VHR+D+ SGLL++A+N + Q+ V +RY+A V+GV P +
Sbjct: 126 NGVLRPGIVHRIDKDTSGLLMVAKNDVAHESLVNQLVEKTVTRRYVALVHGVIPHDNGTI 185
Query: 241 DVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIR 300
D I + + A GK A T F + +++ C TGRTHQIR
Sbjct: 186 DAPIGRDPKDRKKMA--------VVESGKHAVTHFKVLQRFKEFTLIECRLETGRTHQIR 237
Query: 301 VHLQYTGYPIANDMLY 316
VH++Y GYP+A D Y
Sbjct: 238 VHMRYIGYPLAGDPQY 253
>gi|443329468|ref|ZP_21058053.1| pseudouridine synthase, RluA family [Xenococcus sp. PCC 7305]
gi|442790806|gb|ELS00308.1| pseudouridine synthase, RluA family [Xenococcus sp. PCC 7305]
Length = 311
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 120/250 (48%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
G+T++ ++ ++ + + + G+I +D V ++ QK+++ P
Sbjct: 18 VGQTVLQYYSARYRHSNEESWRKKIISGQISLDGRRVDAETILQLGQKLAYHRLPWLEPT 77
Query: 138 MAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVS 197
+ D ++ ++PD+L + KP +PV P G + +NT++ ++ + P+HRL R S
Sbjct: 78 VPLDFEVIYEDPDLLAIAKPAGLPVLPGGGFLQNTLLWQIKKIYPQNTPVPIHRLGRGTS 137
Query: 198 GLLILARNA-SKADLFRQ----------QIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
GLL+LA++A K+ L RQ Q ++ K Y+A+V+ V P +
Sbjct: 138 GLLLLAKSALGKSSLSRQMRSNSTHQTTQSANPRIQKIYLAKVDRVVPRDRFTIT----- 192
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N G G TP GK A ++ I N +I+ +TGR HQIR+HL
Sbjct: 193 NPIGKIPHPHIGYVYGATP-TGKFAHSECQVIKRNPDSTIIQVAILTGRPHQIRIHLAAA 251
Query: 307 GYPIANDMLY 316
G+P+ D LY
Sbjct: 252 GFPLMGDPLY 261
>gi|417936057|ref|ZP_12579374.1| pseudouridine synthase, RluA family [Streptococcus infantis X]
gi|343402966|gb|EGV15471.1| pseudouridine synthase, RluA family [Streptococcus infantis X]
Length = 297
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ I++ + EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDMITYQIP--EPEVLEYVAEDIPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMVAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G ++++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYTLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|207743612|ref|YP_002260004.1| ribosomal large subunit pseudouridine synthase c protein [Ralstonia
solanacearum IPO1609]
gi|421899265|ref|ZP_16329630.1| ribosomal large subunit pseudouridine synthase c protein [Ralstonia
solanacearum MolK2]
gi|206590471|emb|CAQ37433.1| ribosomal large subunit pseudouridine synthase c protein [Ralstonia
solanacearum MolK2]
gi|206595011|emb|CAQ61938.1| ribosomal large subunit pseudouridine synthase c protein [Ralstonia
solanacearum IPO1609]
Length = 352
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 113/248 (45%), Gaps = 16/248 (6%)
Query: 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPP-- 136
G+ I + KG P + ++ G ++V++ + Y +K + R P
Sbjct: 42 GQRIDNFLMRLAKGVPKSHIYRILRSGEVRVNKGRIDAEYRLKLGDLVRIPPLRIAQPSA 101
Query: 137 --------VMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP 188
V A + +IL ++ +L + KP V VH + + ++ D L
Sbjct: 102 EQVEAARAVPAAEFTILHEDTHLLVIDKPAGVAVHGGSGVAFGVIEQLRRSRPDAKFLEL 161
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNA 248
VHRLDR SG+L+LA+ S +QI G++ KRY A V GV+P Q + A
Sbjct: 162 VHRLDRETSGVLLLAKKRSALVALHEQIREGQLDKRYFAAVKGVWPHQRQ------HIKA 215
Query: 249 SAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGY 308
+ T G+ G+ + T F R+ G ++++ E TGRTHQIRVHL + G+
Sbjct: 216 PLFKYTTPEGERRVRVQADGQPSHTIFNRVGVFGPYTLLEAELKTGRTHQIRVHLAHAGF 275
Query: 309 PIANDMLY 316
PI D Y
Sbjct: 276 PILGDDKY 283
>gi|83748464|ref|ZP_00945486.1| Ribosomal large subunit pseudouridine synthase C [Ralstonia
solanacearum UW551]
gi|83724875|gb|EAP72031.1| Ribosomal large subunit pseudouridine synthase C [Ralstonia
solanacearum UW551]
Length = 350
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 113/248 (45%), Gaps = 16/248 (6%)
Query: 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPP-- 136
G+ I + KG P + ++ G ++V++ + Y +K + R P
Sbjct: 40 GQRIDNFLMRLAKGVPKSHIYRILRSGEVRVNKGRIDAEYRLKLGDLVRIPPLRIAQPSA 99
Query: 137 --------VMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP 188
V A + +IL ++ +L + KP V VH + + ++ D L
Sbjct: 100 EQVEAARAVPAAEFTILHEDTHLLVIDKPAGVAVHGGSGVAFGVIEQLRRSRPDAKFLEL 159
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNA 248
VHRLDR SG+L+LA+ S +QI G++ KRY A V GV+P Q + A
Sbjct: 160 VHRLDRETSGVLLLAKKRSALVALHEQIREGQLDKRYFAAVKGVWPHQRQ------HIKA 213
Query: 249 SAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGY 308
+ T G+ G+ + T F R+ G ++++ E TGRTHQIRVHL + G+
Sbjct: 214 PLFKYTTPEGERRVRVQADGQPSHTIFNRVGVFGPYTLLEAELKTGRTHQIRVHLAHAGF 273
Query: 309 PIANDMLY 316
PI D Y
Sbjct: 274 PILGDDKY 281
>gi|417937499|ref|ZP_12580799.1| pseudouridine synthase, RluA family [Streptococcus infantis SK970]
gi|343391763|gb|EGV04336.1| pseudouridine synthase, RluA family [Streptococcus infantis SK970]
Length = 297
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ I++ + EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVITYQVP--EPEVLEYVAENIPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 MALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G ++++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYTLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|422884289|ref|ZP_16930738.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK49]
gi|332360722|gb|EGJ38531.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK49]
Length = 298
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K GRI V+ ++ Y VK IS+ L EP V+ + + I+ ++ DV V K
Sbjct: 33 IKDGRILVNGQVKKAKYVVKEGDVISYELP--EPEVVEYVPEDIPLEIVYQDEDVAVVNK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 VALADELKNKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 PALTRFQVLERFGDFSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|339640863|ref|ZP_08662307.1| pseudouridine synthase, RluA family [Streptococcus sp. oral taxon
056 str. F0418]
gi|339454132|gb|EGP66747.1| pseudouridine synthase, RluA family [Streptococcus sp. oral taxon
056 str. F0418]
Length = 295
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G+I V+ + YTVK IS+ L EP V+ + + I+ ++ DV V K
Sbjct: 31 IKNGQILVNGQAKKAKYTVKEGDIISYELP--EPEVVEYVAEDIPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V ++ DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALIYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 VALAAELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PALTRFQVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|148984670|ref|ZP_01817938.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP3-BS71]
gi|149006397|ref|ZP_01830109.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP18-BS74]
gi|225861177|ref|YP_002742686.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae Taiwan19F-14]
gi|298231008|ref|ZP_06964689.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae str. Canada MDR_19F]
gi|298254573|ref|ZP_06978159.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae str. Canada MDR_19A]
gi|298503058|ref|YP_003724998.1| pseudouridylate synthase [Streptococcus pneumoniae TCH8431/19A]
gi|387757323|ref|YP_006064302.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
OXC141]
gi|387788395|ref|YP_006253463.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae ST556]
gi|417312502|ref|ZP_12099214.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA04375]
gi|417676682|ref|ZP_12326093.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17545]
gi|417698343|ref|ZP_12347516.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41317]
gi|418082857|ref|ZP_12720058.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44288]
gi|418084997|ref|ZP_12722181.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47281]
gi|418093761|ref|ZP_12730890.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA49138]
gi|418096036|ref|ZP_12733151.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA16531]
gi|418100758|ref|ZP_12737844.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 7286-06]
gi|418102650|ref|ZP_12739726.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP070]
gi|418112281|ref|ZP_12749283.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41538]
gi|418118779|ref|ZP_12755736.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA18523]
gi|418132770|ref|ZP_12769643.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11304]
gi|418141518|ref|ZP_12778331.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13455]
gi|418146150|ref|ZP_12782932.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13637]
gi|418150397|ref|ZP_12787148.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA14798]
gi|418152662|ref|ZP_12789402.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA16121]
gi|418154962|ref|ZP_12791693.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA16242]
gi|418157604|ref|ZP_12794320.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA16833]
gi|418164792|ref|ZP_12801462.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17371]
gi|418166547|ref|ZP_12803203.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17971]
gi|418171472|ref|ZP_12808096.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19451]
gi|418195962|ref|ZP_12832441.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47688]
gi|418197756|ref|ZP_12834219.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47778]
gi|418223537|ref|ZP_12850177.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 5185-06]
gi|418225352|ref|ZP_12851981.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP112]
gi|418227514|ref|ZP_12854133.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 3063-00]
gi|418231995|ref|ZP_12858583.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA07228]
gi|418236436|ref|ZP_12863004.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19690]
gi|419424954|ref|ZP_13965153.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 7533-05]
gi|419427402|ref|ZP_13967585.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 5652-06]
gi|419429090|ref|ZP_13969257.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11856]
gi|419435796|ref|ZP_13975889.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 8190-05]
gi|419444852|ref|ZP_13984867.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19923]
gi|419446996|ref|ZP_13987001.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 7879-04]
gi|419448569|ref|ZP_13988566.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 4075-00]
gi|419453032|ref|ZP_13993005.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP03]
gi|419479758|ref|ZP_14019565.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19101]
gi|419486478|ref|ZP_14026244.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44128]
gi|419493073|ref|ZP_14032800.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47210]
gi|419499449|ref|ZP_14039148.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47597]
gi|419501660|ref|ZP_14041346.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47628]
gi|419505863|ref|ZP_14045524.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA49194]
gi|419512326|ref|ZP_14051960.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA05578]
gi|419516603|ref|ZP_14056221.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA02506]
gi|419518723|ref|ZP_14058330.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA08825]
gi|419527676|ref|ZP_14067219.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17719]
gi|421208751|ref|ZP_15665773.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070005]
gi|421211030|ref|ZP_15668014.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070035]
gi|421217447|ref|ZP_15674348.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070335]
gi|421224795|ref|ZP_15681539.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070768]
gi|421233913|ref|ZP_15690535.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2061617]
gi|421240488|ref|ZP_15697035.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2080913]
gi|421249222|ref|ZP_15705684.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2082239]
gi|421283118|ref|ZP_15733905.1| pseudouridine synthase [Streptococcus pneumoniae GA04216]
gi|421287648|ref|ZP_15738413.1| pseudouridine synthase [Streptococcus pneumoniae GA58771]
gi|421289569|ref|ZP_15740320.1| pseudouridine synthase [Streptococcus pneumoniae GA54354]
gi|421298396|ref|ZP_15749084.1| pseudouridine synthase [Streptococcus pneumoniae GA60080]
gi|421304888|ref|ZP_15755544.1| pseudouridine synthase [Streptococcus pneumoniae GA62331]
gi|147762174|gb|EDK69136.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP18-BS74]
gi|147923061|gb|EDK74176.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP3-BS71]
gi|225727922|gb|ACO23773.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae Taiwan19F-14]
gi|298238653|gb|ADI69784.1| pseudouridylate synthase [Streptococcus pneumoniae TCH8431/19A]
gi|301799912|emb|CBW32491.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
OXC141]
gi|327389210|gb|EGE87555.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA04375]
gi|332075542|gb|EGI86010.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17545]
gi|332202784|gb|EGJ16853.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41317]
gi|353756770|gb|EHD37369.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44288]
gi|353758692|gb|EHD39280.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47281]
gi|353765637|gb|EHD46179.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA49138]
gi|353771023|gb|EHD51534.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA16531]
gi|353772694|gb|EHD53199.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 7286-06]
gi|353776816|gb|EHD57291.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP070]
gi|353784147|gb|EHD64568.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41538]
gi|353790731|gb|EHD71112.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA18523]
gi|353805769|gb|EHD86043.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13455]
gi|353806726|gb|EHD86999.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11304]
gi|353814946|gb|EHD95168.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13637]
gi|353815905|gb|EHD96117.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA14798]
gi|353819307|gb|EHD99505.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA16121]
gi|353823254|gb|EHE03429.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA16242]
gi|353824052|gb|EHE04226.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA16833]
gi|353829653|gb|EHE09784.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17371]
gi|353830143|gb|EHE10273.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17971]
gi|353835209|gb|EHE15303.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19451]
gi|353861413|gb|EHE41350.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47688]
gi|353863912|gb|EHE43831.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47778]
gi|353878335|gb|EHE58165.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 5185-06]
gi|353882660|gb|EHE62471.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP112]
gi|353883115|gb|EHE62924.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 3063-00]
gi|353888301|gb|EHE68077.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA07228]
gi|353892668|gb|EHE72416.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19690]
gi|379138137|gb|AFC94928.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae ST556]
gi|379551038|gb|EHZ16133.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11856]
gi|379565829|gb|EHZ30820.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17719]
gi|379570924|gb|EHZ35883.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19101]
gi|379572545|gb|EHZ37502.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19923]
gi|379588093|gb|EHZ52939.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44128]
gi|379595111|gb|EHZ59920.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47210]
gi|379602021|gb|EHZ66793.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47628]
gi|379602503|gb|EHZ67274.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47597]
gi|379607777|gb|EHZ72523.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA49194]
gi|379614536|gb|EHZ79246.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 7879-04]
gi|379615931|gb|EHZ80632.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 8190-05]
gi|379618855|gb|EHZ83530.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 5652-06]
gi|379620283|gb|EHZ84942.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 7533-05]
gi|379623627|gb|EHZ88260.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 4075-00]
gi|379626741|gb|EHZ91357.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP03]
gi|379636796|gb|EIA01354.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA05578]
gi|379640606|gb|EIA05145.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA02506]
gi|379641702|gb|EIA06237.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA08825]
gi|395573753|gb|EJG34340.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070035]
gi|395575707|gb|EJG36272.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070005]
gi|395584933|gb|EJG45325.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070335]
gi|395590583|gb|EJG50887.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070768]
gi|395602810|gb|EJG62952.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2061617]
gi|395609070|gb|EJG69160.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2080913]
gi|395614523|gb|EJG74542.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2082239]
gi|395881081|gb|EJG92130.1| pseudouridine synthase [Streptococcus pneumoniae GA04216]
gi|395888260|gb|EJG99272.1| pseudouridine synthase [Streptococcus pneumoniae GA58771]
gi|395888810|gb|EJG99820.1| pseudouridine synthase [Streptococcus pneumoniae GA54354]
gi|395902352|gb|EJH13285.1| pseudouridine synthase [Streptococcus pneumoniae GA60080]
gi|395905550|gb|EJH16455.1| pseudouridine synthase [Streptococcus pneumoniae GA62331]
gi|429317749|emb|CCP37549.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
SPN034156]
gi|429319292|emb|CCP32542.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
SPN034183]
gi|429321107|emb|CCP34516.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
SPN994039]
gi|429322927|emb|CCP30557.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
SPN994038]
Length = 295
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+ +A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHSVAGDEVY 247
>gi|386333987|ref|YP_006030158.1| ribosomal large subunit pseudouridine synthase c protein [Ralstonia
solanacearum Po82]
gi|334196437|gb|AEG69622.1| ribosomal large subunit pseudouridine synthase c protein [Ralstonia
solanacearum Po82]
Length = 352
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 113/248 (45%), Gaps = 16/248 (6%)
Query: 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPP-- 136
G+ I + KG P + ++ G ++V++ + Y +K + R P
Sbjct: 42 GQRIDNFLMRLAKGVPKSHIYRILRSGEVRVNKGRIDAEYRLKLGDLVRIPPLRIAQPSA 101
Query: 137 --------VMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP 188
V A + +IL ++ +L + KP V VH + + ++ D L
Sbjct: 102 EQVEAARAVPAAEFTILHEDTHLLVIDKPAGVAVHGGSGVAFGVIEQLRRSRPDAKFLEL 161
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNA 248
VHRLDR SG+L+LA+ S +QI G++ KRY A V GV+P Q + A
Sbjct: 162 VHRLDRETSGVLLLAKKRSALVALHEQIREGQLDKRYFAAVKGVWPHQRQ------HMKA 215
Query: 249 SAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGY 308
+ T G+ G+ + T F R+ G ++++ E TGRTHQIRVHL + G+
Sbjct: 216 PLFKYTTPEGERRVRVQADGQPSHTIFNRVGVFGPYTLLEAELKTGRTHQIRVHLAHAGF 275
Query: 309 PIANDMLY 316
PI D Y
Sbjct: 276 PILGDDKY 283
>gi|194015066|ref|ZP_03053683.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus pumilus ATCC 7061]
gi|194014092|gb|EDW23657.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus pumilus ATCC 7061]
Length = 304
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 21/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM-----AWDVSILQKEPDVLTVCK 156
VK G I+V+ + V +Y V++ +I + EP V+ D+ I ++ DVL V K
Sbjct: 37 VKDGLIEVNGKQVKANYKVQAGDQIK--VEIPEPEVLDVEAEPMDLDIYYEDADVLVVNK 94
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L A DL+ + VHR+D+ SGLL++A+N
Sbjct: 95 PRGMVVHPAPGHVSGTLVNGLMAHCTDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDMAH 154
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ Q+ A V ++Y A V+G+ +D I + +S + +S K
Sbjct: 155 ESLVNQLVAKTVTRKYTAVVHGIIQHDTGTIDAPIGRDKKDRQSMTVTKES-------AK 207
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F I ++V C TGRTHQIRVH++Y GYP+A D Y
Sbjct: 208 QAVTHFDVIERFQDFTVVECRLETGRTHQIRVHMKYIGYPLAGDPKY 254
>gi|421888778|ref|ZP_16319859.1| Ribosomal large subunit pseudouridine synthase C [Ralstonia
solanacearum K60-1]
gi|378965894|emb|CCF96607.1| Ribosomal large subunit pseudouridine synthase C [Ralstonia
solanacearum K60-1]
Length = 350
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 113/248 (45%), Gaps = 16/248 (6%)
Query: 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPP-- 136
G+ I + KG P + ++ G ++V++ + Y +K + R P
Sbjct: 40 GQRIDNFLMRLAKGVPKSHIYRILRSGEVRVNKGRIDAEYRLKLGDLVRIPPLRIAQPSA 99
Query: 137 --------VMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP 188
V A + +IL ++ +L + KP V VH + + ++ D L
Sbjct: 100 EQVEAARAVPAAEFTILHEDTHLLVIDKPAGVAVHGGSGVAFGVIEQLRRSRPDAKFLEL 159
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNA 248
VHRLDR SG+L+LA+ S +QI G++ KRY A V GV+P Q + A
Sbjct: 160 VHRLDRETSGVLLLAKKRSALVALHEQIREGQLDKRYFAAVKGVWPHQRQ------HIKA 213
Query: 249 SAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGY 308
+ T G+ G+ + T F R+ G ++++ E TGRTHQIRVHL + G+
Sbjct: 214 PLFKYTTPEGERRVRVQADGQPSHTIFNRVGVFGPYTLLEAELKTGRTHQIRVHLAHAGF 273
Query: 309 PIANDMLY 316
PI D Y
Sbjct: 274 PILGDDKY 281
>gi|419451268|ref|ZP_13991254.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP02]
gi|379622973|gb|EHZ87607.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP02]
Length = 295
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKQQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+ +A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHSVAGDEVY 247
>gi|359786230|ref|ZP_09289366.1| ribosomal large subunit pseudouridine synthase C [Halomonas sp.
GFAJ-1]
gi|359296344|gb|EHK60596.1| ribosomal large subunit pseudouridine synthase C [Halomonas sp.
GFAJ-1]
Length = 313
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 116/256 (45%), Gaps = 16/256 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
AG+ I + KG P V+ G ++V+++ V V Y +++ + R P
Sbjct: 17 AGQRIDNFLMTRLKGAPRALIYRIVRKGEVRVNKKRVKVDYRLQAGDLVRVPPLRLAPRE 76
Query: 138 MAWDVS----------ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
+VS ++ + PD + + KP + VH + + + Q DL L
Sbjct: 77 AVKEVSDNLRDLLIGSVIMEGPDWMVLNKPSGLAVHGGSGVKIGLIEALRQVRDDLTFLE 136
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SG L+LA++ + ++ + KRY+A VNG +P + V ++
Sbjct: 137 LVHRLDRDTSGCLLLAKSRDALVTLNESLKKHAMDKRYLALVNGRWPARKTYVGARLD-- 194
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTG 307
R A +G+ GK + T F+ + T ++V EP+TGRTHQIRVH + G
Sbjct: 195 ----RFDAGNGERRVRVDPNGKVSRTLFSVVETFEKATLVEAEPVTGRTHQIRVHAAHAG 250
Query: 308 YPIANDMLYLCEHVTH 323
+ + D Y H
Sbjct: 251 HALLGDDKYSTRESVH 266
>gi|257082401|ref|ZP_05576762.1| pseudouridylate synthase [Enterococcus faecalis E1Sol]
gi|256990431|gb|EEU77733.1| pseudouridylate synthase [Enterococcus faecalis E1Sol]
Length = 301
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM---AWDV--SILQKEPDVLTVCK 156
+K + V+ E V +Y V + +I + EP V+ A D+ +I+ ++ DV+ V K
Sbjct: 35 LKEKHVTVNGETVRANYKVTAGDEI--VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNK 92
Query: 157 PPSVPVHPCGQYRKNTVVGIL--QAEH-----DLAPLFPVHRLDRLVSGLLILARNASKA 209
P + VHP + K T+V L A+H D+ VHR+D+ SGLL++A+N
Sbjct: 93 PQGMVVHPSAGHPKGTLVNALLHHADHLSAINDVVRPGIVHRIDKDTSGLLMVAKNDQAH 152
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFP--EGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ +Q++ +++Y+A V+GV P +GE N GRS + +
Sbjct: 153 ESLAKQLKEKTSLRKYVALVHGVIPHDKGE--------INTPIGRSKVDR--KMQAVIEG 202
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + ++V + TGRTHQIRVH++Y GYP+A D LY
Sbjct: 203 GKEAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKYIGYPLAGDPLY 251
>gi|335029985|ref|ZP_08523484.1| pseudouridine synthase, RluA family [Streptococcus infantis SK1076]
gi|334267447|gb|EGL85907.1| pseudouridine synthase, RluA family [Streptococcus infantis SK1076]
Length = 296
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ Y+V+ I++ + EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYSVQEGDVITYQVP--EPEVLEYVAEDIPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 MALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYSLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|421227086|ref|ZP_15683795.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2072047]
gi|395596325|gb|EJG56544.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2072047]
Length = 295
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+ +A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHSVAGDEVY 247
>gi|406979465|gb|EKE01250.1| hypothetical protein ACD_21C00185G0001 [uncultured bacterium]
Length = 315
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 118/249 (47%), Gaps = 16/249 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ--KISHFLH---- 131
AG+ I + + K P ++ G ++V+ + SY ++S+ +I F
Sbjct: 21 AGQRIDNFLFNKMKNVPKSRIYKMLRGGEVRVNGGRIGPSYKIQSNDLIRIPPFWSDPEE 80
Query: 132 -RHEPP---VMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
++EP + SI+ ++ +L V KP + H + + A DL L
Sbjct: 81 IKNEPKSNLIKLLLDSIIFEDDRILVVNKPSGIASHGGSGINFGVIEILRSARPDLRALE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SG ++LA+ S Q I GK++K+YI V G + GE++V +
Sbjct: 141 LVHRLDRDTSGCIVLAKKRSSLRELHQLIRDGKILKKYILLVRGHWDGGERIV------S 194
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTG 307
A ++ SG+ + +GK + T F I + S++ E TGRTHQIRVH + G
Sbjct: 195 APLLKNQLSSGERIVTVTQEGKESTTIFQPIRSGANISLLDAELKTGRTHQIRVHATHIG 254
Query: 308 YPIANDMLY 316
YPIA D Y
Sbjct: 255 YPIAGDEKY 263
>gi|229174558|ref|ZP_04302089.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
MM3]
gi|423401265|ref|ZP_17378438.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-2]
gi|423457923|ref|ZP_17434720.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X2-1]
gi|423478031|ref|ZP_17454746.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-1]
gi|228608927|gb|EEK66218.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
MM3]
gi|401148307|gb|EJQ55800.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X2-1]
gi|401654255|gb|EJS71798.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-2]
gi|402428193|gb|EJV60290.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-1]
Length = 302
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 121/253 (47%), Gaps = 31/253 (12%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFL-HR 132
AEE K D +V+ + K + V+ + V V+Y VK + +I+ +
Sbjct: 10 AEEQKSERIDKFVAEINSEWSRSQVQQWIKDDVVTVNGKSVKVNYKVKENDEITVTIPDP 69
Query: 133 HEPPVMAWD--VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL--- 186
E + A D + I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQAEDMGLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGINGV 129
Query: 187 ---FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVN 243
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 130 MRPGIVHRIDKDTSGLLMVAKNDVAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID-- 187
Query: 244 INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHL 303
A GR E D GK A T F + ++V C TGRTHQIRVH+
Sbjct: 188 ----APIGRDKKERQSMTVDE--NGKNAVTHFQVLERFKDFTLVECRLETGRTHQIRVHM 241
Query: 304 QYTGYPIANDMLY 316
+Y GYP+A D Y
Sbjct: 242 KYIGYPLAGDPKY 254
>gi|307273068|ref|ZP_07554314.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0855]
gi|422695134|ref|ZP_16753122.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4244]
gi|422728751|ref|ZP_16785157.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0012]
gi|424761167|ref|ZP_18188749.1| pseudouridine synthase, RluA family [Enterococcus faecalis R508]
gi|306510053|gb|EFM79077.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0855]
gi|315147417|gb|EFT91433.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4244]
gi|315150758|gb|EFT94774.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0012]
gi|402402430|gb|EJV35146.1| pseudouridine synthase, RluA family [Enterococcus faecalis R508]
Length = 310
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM---AWDV--SILQKEPDVLTVCK 156
+K + V+ E V +Y V + +I + EP V+ A D+ +I+ ++ DV+ V K
Sbjct: 44 LKEKHVTVNGETVRANYKVTAGDEI--VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNK 101
Query: 157 PPSVPVHPCGQYRKNTVVGIL--QAEH-----DLAPLFPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L A+H D+ VHR+D+ SGLL++A+N
Sbjct: 102 PQGMVVHPSAGHPNGTLVNALLHHADHLSAINDVVRPGIVHRIDKDTSGLLMVAKNDQAH 161
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFP--EGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ +Q++ +++Y+A V+GV P +GE NA GRS + +
Sbjct: 162 ESLAKQLKEKTSLRKYVALVHGVIPHDKGE--------INAPIGRSKVDR--KMQAVIEG 211
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + ++V + TGRTHQIRVH++Y GYP+A D LY
Sbjct: 212 GKEAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKYIGYPLAGDPLY 260
>gi|171912659|ref|ZP_02928129.1| hypothetical protein VspiD_15805 [Verrucomicrobium spinosum DSM
4136]
Length = 596
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 131/259 (50%), Gaps = 15/259 (5%)
Query: 64 PYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRI--QVDEEMVPVSYTVK 121
PY E +V + GK ++++ F + + + GR + E + +
Sbjct: 300 PYENERPLNVPSEQDGKPLLEVVIALFPQIDAEEWQRRCEEGRFTRESGERLTASTVLAA 359
Query: 122 SSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH 181
+ + HF EPPV A D+ +L ++ ++ + KP +P+HP G++ +NT IL +
Sbjct: 360 GDRCVQHFPAAAEPPVNA-DLKVLHEDEAIVVLDKPAPLPMHPAGRFNRNTAQYILSQVY 418
Query: 182 DLAPLFP--VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
AP P VHRLD +GL++ AR A+L ++Q + + K Y+ RV G PE +Q
Sbjct: 419 --APQRPRLVHRLDANTTGLVVCARTRHFANLLQKQFKDFSIEKGYVVRVLG-HPEADQF 475
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL-CEPITGRTHQ 298
+ V+ +A G + + D G++A T F +S +G + +L P+TGRT+Q
Sbjct: 476 M-VDAPISAEPGHLGSYAVDEE-----MGQSARTDFVVLSRDGDGTSLLEARPLTGRTNQ 529
Query: 299 IRVHLQYTGYPIANDMLYL 317
IR+HL + G+ I D YL
Sbjct: 530 IRLHLAHLGHNIVGDPTYL 548
>gi|419438029|ref|ZP_13978099.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13499]
gi|379538034|gb|EHZ03215.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13499]
Length = 292
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+ +A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHSVAGDEVY 247
>gi|333901066|ref|YP_004474939.1| RluA family pseudouridine synthase [Pseudomonas fulva 12-X]
gi|333116331|gb|AEF22845.1| pseudouridine synthase, RluA family [Pseudomonas fulva 12-X]
Length = 317
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 127/279 (45%), Gaps = 20/279 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + + KG P ++ G ++V++ + Y +++ + R
Sbjct: 21 AGQRIDNFLRNQLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDIVRVPPLRLAERD 80
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ + KP + VH + Q D L
Sbjct: 81 EPEPLAQGLLQRLEAAIVYEDKALIVINKPAGIAVHGGSGLNYGVIEAFRQLRPDAKDLE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SGLL++A+ S +Q+ V KRY+A V G + ++ + N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHEQLRGDGVDKRYMALVRGHWATAKKQI------N 194
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL-CEPITGRTHQIRVHLQYT 306
A +S SG+ + + +GK A T F + G + ++ +P+TGRTHQIRVH QY
Sbjct: 195 APLLKSNLRSGERMVEVNPEGKEALTVFRVLRRFGEFATLIEAKPVTGRTHQIRVHAQYG 254
Query: 307 GYPIANDMLYLCEHVTH--RE-GMSADRAAAYSHHSPPP 342
G+ IA D Y + T RE G AY H P P
Sbjct: 255 GHCIAGDSKYGDDDFTREIRELGGKRLFLHAYELHVPLP 293
>gi|168187890|ref|ZP_02622525.1| hypothetical RNA pseudouridine synthase YhcT [Clostridium botulinum
C str. Eklund]
gi|169294254|gb|EDS76387.1| hypothetical RNA pseudouridine synthase YhcT [Clostridium botulinum
C str. Eklund]
Length = 301
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 127/254 (50%), Gaps = 26/254 (10%)
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHE-----PPVMAWDVSILQKEPDVLTV 154
A + GRI+V+ E V +SY +K++ I ++R E P M D I+ ++ D++ +
Sbjct: 38 KAAREGRIKVNNENVRLSYMLKNNDLIEIQINRKEEQDIVPEKMKLD--IIYEDEDIIVI 95
Query: 155 CKPPSVPVHPCGQYRKNTVV-GIL---QAEHDLAPLFPVHRLDRLVSGLLILARNASKAD 210
KP ++ VHP ++ T+ G+L + +++ + + V+RLD SGL+++A+NA
Sbjct: 96 NKPKAIVVHPTKRHLNGTLSNGVLYYFKEKNENSIVRLVNRLDMDTSGLVLIAKNAYSHM 155
Query: 211 LFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKA 270
+ ++ IKRY+A V+G E V+D I Y G + D +G+
Sbjct: 156 ALSRDMQKDDFIKRYLAIVHGNLEEKSGVIDKPI-YRVGEG-TLKRVIDE------RGQK 207
Query: 271 ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSAD 330
+ T+F I + ++ TGRTHQIRVHL G+PI D LY E E D
Sbjct: 208 SITRFKVIESYENADLIELTLETGRTHQIRVHLSSIGHPIYGDALYGKE-----EHEYID 262
Query: 331 RAA--AYSHHSPPP 342
R A AY P P
Sbjct: 263 RQALHAYKLQIPHP 276
>gi|422865589|ref|ZP_16912214.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1058]
gi|327489656|gb|EGF21448.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1058]
Length = 298
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K GRI V+ + Y VK IS+ + EP V+ + + I+ ++ DV V K
Sbjct: 33 IKDGRILVNGQAKKAKYAVKEGDVISY--EQPEPEVVEYVPEDIPLEIVYQDEDVAVVNK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 VALADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 PALTRFQVLERFGDYTLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|392421831|ref|YP_006458435.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri CCUG 29243]
gi|390984019|gb|AFM34012.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri CCUG 29243]
Length = 317
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 121/264 (45%), Gaps = 17/264 (6%)
Query: 70 ISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS-- 127
I V AG+ I + + KG P ++ G ++V++ + Y +++ +
Sbjct: 13 ILEVAPELAGQRIDNFLRNQLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDLVRVP 72
Query: 128 --HFLHRHEPPVMAWDV------SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
R EP +A + +I+ ++ ++ + KP + VH + + Q
Sbjct: 73 PLRLAERDEPEPLAQGLLERLEKAIVHEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQL 132
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
D L VHRLDR SGLL++A+ S Q + V KRY+A V G + ++
Sbjct: 133 RPDAKELELVHRLDRDTSGLLMVAKKRSMLRHLHQALRGDGVDKRYMALVRGRWETSKKQ 192
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQ 298
V NA ++T SG+ + + GK A T F + G ++V +P+TGRTHQ
Sbjct: 193 V------NAPLLKNTLRSGERMVEVTEDGKEALTLFRVLRRFGDFATLVEAKPVTGRTHQ 246
Query: 299 IRVHLQYTGYPIANDMLYLCEHVT 322
IRVH ++ G+ IA D Y E T
Sbjct: 247 IRVHARHAGHSIAGDSKYGDEEFT 270
>gi|422848774|ref|ZP_16895450.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK115]
gi|325689795|gb|EGD31799.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK115]
Length = 298
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K GRI V+ + Y VK I + L EP V+ + + I+ ++ DV V K
Sbjct: 33 IKDGRILVNGQAKKAKYAVKEGDIIYYELP--EPEVVEYVPEDIPLEIVYQDEDVAVVNK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 VALADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 SALTRFQVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|422854169|ref|ZP_16900833.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK160]
gi|325696405|gb|EGD38295.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK160]
Length = 298
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K GRI V+ + Y VK I + L EP V+ + + I+ ++ DV V K
Sbjct: 33 IKDGRILVNGQAKKAKYAVKEGDIIYYELP--EPEVVEYVPEDIPLEIVYQDEDVAVVNK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 VALADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 SALTRFQVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|309800529|ref|ZP_07694680.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
infantis SK1302]
gi|308115840|gb|EFO53365.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
infantis SK1302]
Length = 297
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 118/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ + EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTYQVP--EPEVLEYVAEDIPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ A GRS + +KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIE------APIGRSEKDRKKQA--VTVKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G ++++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYTLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|452747532|ref|ZP_21947327.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri NF13]
gi|452008648|gb|EME00886.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri NF13]
Length = 317
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 121/264 (45%), Gaps = 17/264 (6%)
Query: 70 ISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS-- 127
I V AG+ I + + KG P ++ G ++V++ + Y +++ +
Sbjct: 13 ILEVAPELAGQRIDNFLRNQLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDLVRVP 72
Query: 128 --HFLHRHEPPVMAWDV------SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
R EP +A + +I+ ++ ++ + KP + VH + + Q
Sbjct: 73 PLRLAERDEPEPLAQGLLERLEKAIVHEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQL 132
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
D L VHRLDR SGLL++A+ S Q + V KRY+A V G + ++
Sbjct: 133 RPDAKELELVHRLDRDTSGLLMVAKKRSMLRHLHQALRGDGVDKRYMALVRGRWETSKKQ 192
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQ 298
V NA ++T SG+ + + GK A T F + G ++V +P+TGRTHQ
Sbjct: 193 V------NAPLLKNTLRSGERMVEVTEDGKEALTLFRVLRRFGDFATLVEAKPVTGRTHQ 246
Query: 299 IRVHLQYTGYPIANDMLYLCEHVT 322
IRVH ++ G+ IA D Y E T
Sbjct: 247 IRVHARHAGHSIAGDSKYGDEEFT 270
>gi|254482018|ref|ZP_05095260.1| pseudouridine synthase, RluA family [marine gamma proteobacterium
HTCC2148]
gi|214037708|gb|EEB78373.1| pseudouridine synthase, RluA family [marine gamma proteobacterium
HTCC2148]
Length = 318
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 119/261 (45%), Gaps = 23/261 (8%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHR----H 133
+G+ + + E KG P A++ G I+V++ V Y + + + R
Sbjct: 21 SGQRLDNFLTRELKGVPRTRLYRALRKGEIRVNKGRVKADYRLVTGDLVRIPPLRTPAPS 80
Query: 134 EPPVMA--WDVSILQK----EPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
+PP + W + Q+ + +L V KP + VH + + Q + L
Sbjct: 81 DPPTIPRYWSEQLKQRVIYEDGGLLVVDKPSGLAVHGGSGLNFGMIESLRQIRSEDRYLE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SGL+++AR + +Q+ V KRY+A V G +P + VD + N
Sbjct: 141 LVHRLDRDTSGLIMVARKPAILRELHRQLREDHVDKRYLALVAGKWPRSKVRVDAPLQKN 200
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTG 307
+SG+ + +GK + T FT + ++V +P+TGRTHQIRVH + G
Sbjct: 201 ------VLQSGERMVRVAKEGKRSITDFTVVERFKGATLVEAKPVTGRTHQIRVHALHAG 254
Query: 308 YPIANDMLY-------LCEHV 321
+P+ D Y LCE +
Sbjct: 255 FPLLGDSKYGSPKGEALCEQI 275
>gi|386287786|ref|ZP_10064957.1| RluA family pseudouridine synthase [gamma proteobacterium BDW918]
gi|385279296|gb|EIF43237.1| RluA family pseudouridine synthase [gamma proteobacterium BDW918]
Length = 317
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 125/258 (48%), Gaps = 24/258 (9%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHR 132
V+ + G+ I + E KG P + ++ G ++V++ Y +++ + R
Sbjct: 16 VEADYVGQRIDNFLMRELKGVPKSRIYNLLRRGEVRVNKSRAKPDYKLQTGDVVRVPPVR 75
Query: 133 ----HEPPV-MAWDV----SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDL 183
E V + D +IL ++ +L + KP + VH +G+++A +
Sbjct: 76 VAVREESAVPLGLDAGLRSAILYEDAGLLVINKPSGLAVHGGS----GISLGLIEALRQM 131
Query: 184 AP----LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK-VIKRYIARVNGVFPEGEQ 238
P L VHRLDR SG +++A+ S + ++A K V KRY+A V G +P +Q
Sbjct: 132 YPEQRHLELVHRLDRDTSGCVMVAKKRSVLKQLHELLKARKGVDKRYLALVGGKWPARKQ 191
Query: 239 VVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
V NA ++ SG+ + L+GK + T++T + S++ P+TGRTHQ
Sbjct: 192 QV------NAPLQKNVLSSGERMVRVELEGKKSVTEYTLLRRVAGASLIEARPVTGRTHQ 245
Query: 299 IRVHLQYTGYPIANDMLY 316
IRVH QY GYPI D Y
Sbjct: 246 IRVHCQYAGYPILGDDKY 263
>gi|256964973|ref|ZP_05569144.1| pseudouridylate synthase [Enterococcus faecalis HIP11704]
gi|256955469|gb|EEU72101.1| pseudouridylate synthase [Enterococcus faecalis HIP11704]
gi|295113102|emb|CBL31739.1| ribosomal large subunit pseudouridine synthase D [Enterococcus sp.
7L76]
Length = 301
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM---AWDV--SILQKEPDVLTVCK 156
+K + V+ E V +Y V + +I + EP V+ A D+ +I+ ++ DV+ V K
Sbjct: 35 LKEKHVTVNGETVRANYKVTAGDEI--VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNK 92
Query: 157 PPSVPVHPCGQYRKNTVVGIL--QAEH-----DLAPLFPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L A+H D+ VHR+D+ SGLL++A+N
Sbjct: 93 PQGMVVHPSAGHPNGTLVNALLHHADHLSAINDVVRPGIVHRIDKDTSGLLMVAKNDQAH 152
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ +Q++ +++Y+A V+GV P + + NA GRS + + GK
Sbjct: 153 ESLAKQLKEKTSLRKYVALVHGVIPHDKGEI------NAPIGRSKVDR--KMQAVIEGGK 204
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T FT + ++V + TGRTHQIRVH++Y GYP+A D LY
Sbjct: 205 EAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKYIGYPLAGDPLY 251
>gi|228909719|ref|ZP_04073542.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis IBL 200]
gi|228850008|gb|EEM94839.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis IBL 200]
Length = 302
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA-----WDVSILQKEPDVLTVCK 156
+K + V+ + V V+Y VK +I+ + EP + ++ I ++ DVL V K
Sbjct: 38 IKDDVVTVNGKTVKVNYKVKEEDEITVTIP--EPEALDIQPEDMNLEIYYEDADVLVVNK 95
Query: 157 PPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V G++ DL+ + VHR+D+ SGLL++A+N
Sbjct: 96 PRGMVVHPAPGHTSGTLVNGLMHHCTDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDMAH 155
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ Q+ A V +RY A V+GV P + +D A GR E D GK
Sbjct: 156 ESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID------APIGRDKKERQSMTVDE--NGK 207
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F + ++V C TGRTHQIRVH++Y GYP+A D Y
Sbjct: 208 NAVTHFQVLERFKDFTLVECRLETGRTHQIRVHMKYIGYPLAGDPKY 254
>gi|422821336|ref|ZP_16869529.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK353]
gi|324991250|gb|EGC23184.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK353]
Length = 298
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G I V+ + Y VK IS+ L EP V+ + + I+ ++ DV V K
Sbjct: 33 IKDGWILVNGQAKKAKYAVKEGDVISYELP--EPEVVEYVAEDIPLEIVYQDEDVAVVNK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHIQDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 VALADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 SALTRFQVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|322387558|ref|ZP_08061167.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
infantis ATCC 700779]
gi|419843101|ref|ZP_14366425.1| pseudouridine synthase, RluA family [Streptococcus infantis ATCC
700779]
gi|321141425|gb|EFX36921.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
infantis ATCC 700779]
gi|385703203|gb|EIG40329.1| pseudouridine synthase, RluA family [Streptococcus infantis ATCC
700779]
Length = 297
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ + YTV+ I++ + EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGHVKKAKYTVQEGDVITYQIP--EPEVLEYVAEDIPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 MALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G ++++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYTLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|422826249|ref|ZP_16874428.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK678]
gi|324995685|gb|EGC27597.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK678]
Length = 298
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G+I V+ + Y VK IS+ L EP V+ + + I+ ++ DV V K
Sbjct: 33 IKDGQILVNGQAKKAKYAVKEGDVISYELP--EPEVVEYVPEDIPLEIVYQDEDVAVVNK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHIQDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 LALADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 PALTRFQVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|328957532|ref|YP_004374918.1| pseudouridylate synthase [Carnobacterium sp. 17-4]
gi|328673856|gb|AEB29902.1| pseudouridylate synthase [Carnobacterium sp. 17-4]
Length = 301
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 116/231 (50%), Gaps = 30/231 (12%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + V+ E + +Y V+ +I+ EP +++ +V I+ ++ DV+ V
Sbjct: 36 IKEGNVSVNGEKMKANYKVQPGDEIAIV----EPELVSLEVLAEDIPIEIVYQDEDVVVV 91
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP---------VHRLDRLVSGLLILARN 205
K + VHP ++ T+V L H + L VHR+D+ SGLL++A+N
Sbjct: 92 NKAQGMVVHPSAGHQTGTLVNALM--HHITDLSGINGTIRPGIVHRIDKDTSGLLMVAKN 149
Query: 206 ASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTP 265
+ + Q++ ++ YIA V+GV P + +D A GRS + D
Sbjct: 150 DAAHEKLAAQLKDKTSLREYIALVHGVIPHEKGTID------APLGRSKQDRKKQ--DII 201
Query: 266 LKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
G+AA T FT + ++V + TGRTHQIRVH++Y GYP+A D +Y
Sbjct: 202 DGGRAAVTHFTVLERFKDFTLVSLKLETGRTHQIRVHMKYIGYPLAGDPIY 252
>gi|218899046|ref|YP_002447457.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus G9842]
gi|228902397|ref|ZP_04066552.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis IBL 4222]
gi|228966845|ref|ZP_04127889.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar sotto str. T04001]
gi|402564764|ref|YP_006607488.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis HD-771]
gi|423359071|ref|ZP_17336574.1| RluA family pseudouridine synthase [Bacillus cereus VD022]
gi|434376996|ref|YP_006611640.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis HD-789]
gi|218543499|gb|ACK95893.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus G9842]
gi|228792944|gb|EEM40502.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228857254|gb|EEN01759.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis IBL 4222]
gi|401084943|gb|EJP93189.1| RluA family pseudouridine synthase [Bacillus cereus VD022]
gi|401793416|gb|AFQ19455.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis HD-771]
gi|401875553|gb|AFQ27720.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis HD-789]
Length = 302
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 111/229 (48%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTV 154
+K + V+ + V V+Y VK +I+ + P A D+ I ++ DVL V
Sbjct: 38 IKDDVVTVNGKAVKVNYKVKEEDEITVTI----PDPEALDIQPEDMNLEIYYEDADVLVV 93
Query: 155 CKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V G++ DL+ + VHR+D+ SGLL++A+N
Sbjct: 94 NKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDM 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ Q+ A V +RY A V+GV P + +D A GR E D
Sbjct: 154 AHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID------APIGRDKKERQSMTVDE--N 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + ++V C TGRTHQIRVH++Y GYP+A D Y
Sbjct: 206 GKNAVTHFQVLERFKDFTLVECRLETGRTHQIRVHMKYIGYPLAGDPKY 254
>gi|294944527|ref|XP_002784300.1| ribosomal pseudouridine synthase, putative [Perkinsus marinus ATCC
50983]
gi|239897334|gb|EER16096.1| ribosomal pseudouridine synthase, putative [Perkinsus marinus ATCC
50983]
Length = 296
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 128/284 (45%), Gaps = 36/284 (12%)
Query: 46 NPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEF-------KGRPYDYY 98
+PP E + G R K Y + + K RW G++I D+ + EF + + Y
Sbjct: 8 SPPEDEFDVTATGIR-AKRYTTTKVVNCKKRWRGRSIQDIISVEFALDSEYIEKACREGY 66
Query: 99 VSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV--MAWDVSILQKEPD----VL 152
+ K G+ V + P S +K+ + + H EP V + I+ D ++
Sbjct: 67 LRIRKAGKNAVPQRAKPESL-LKNGESLVHTWKAEEPQVDFTCGETGIVFIREDSARGIV 125
Query: 153 TVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLF 212
V KP +P H G+Y + ++V IL +L+ + P++RLDR SG+++LA +AS +
Sbjct: 126 AVHKPAGLPTHSGGKYMRTSLVHILARAFNLSTIRPINRLDRETSGVVLLAADASVHERL 185
Query: 213 RQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAAC 272
+ + KV VD ++ R +S +S C
Sbjct: 186 KDRSLLSKV---------PALCRTPIAVDRHVPNQPLMSRVVEDSTNS---------TLC 227
Query: 273 TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T R NG +V C P+TG+THQIRVHL + G+PI D LY
Sbjct: 228 TTLFRNLGNG---VVACRPVTGKTHQIRVHLSHLGFPIQGDTLY 268
>gi|162447675|ref|YP_001620807.1| ribosomal large subunit pseudouridine synthase, RluA-like protein
[Acholeplasma laidlawii PG-8A]
gi|161985782|gb|ABX81431.1| ribosomal large subunit pseudouridine synthase, RluA-like protein
[Acholeplasma laidlawii PG-8A]
Length = 297
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 20/229 (8%)
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP--PVMA--WDVSILQKEPDVLTVC 155
+ +K G + V+ Y +K+S +I+ L E P+ D++I+ ++ D++ +
Sbjct: 30 TLIKDGLVMVNGLTTKAGYKLKNSDEITLNLEAKEETNPLKPKNIDLNIVYEDDDIMVIN 89
Query: 156 KPPSVPVHPCGQYRKNTVV-GILQ-----AEHDLAPLFP--VHRLDRLVSGLLILARNAS 207
KP + VHP + + T+V G+L + H+ PL P +HR+D+ SGL+++A+
Sbjct: 90 KPKGLVVHPSETFSETTLVSGLLHHTDTLSTHNDDPLRPGILHRIDKDTSGLILVAKTNE 149
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ Q +++ + + YIA V GV + V+D I + A
Sbjct: 150 AHKILAQDLKSHDIKREYIALVEGVLDHNKGVIDAPIARHPKIRTKMAVVA--------T 201
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + T H+++ C+ TGRTHQIRVHL Y +P+ D LY
Sbjct: 202 GKPAITHFEVMRTFRDHTLLHCKLETGRTHQIRVHLAYIKHPVTGDPLY 250
>gi|422882191|ref|ZP_16928647.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK355]
gi|332360785|gb|EGJ38592.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK355]
Length = 298
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G+I V+ + Y VK +S+ L EP V+ + + I+ ++ DV V K
Sbjct: 33 IKDGQILVNGQAKKAKYAVKEGDVVSYELS--EPEVVEYVAEDIPLEIVYQDEDVAVVNK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 AALADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 PALTRFQVLERFGDYTLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|418294221|ref|ZP_12906117.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
gi|379065600|gb|EHY78343.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
Length = 317
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 119/256 (46%), Gaps = 17/256 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + + KG P ++ G ++V++ + Y +++ + R
Sbjct: 21 AGQRIDNFLRNQLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDVVRVPPLRLAERD 80
Query: 134 EPPVMAWDV------SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ + KP + VH + + Q D L
Sbjct: 81 EPEPLAQGLLERLEKAIVHEDKTLIVLNKPAGIAVHGGSGLSYGVIEAMRQLRPDAKELE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SGLL++A+ S Q + V KRY+A V G + ++ V N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHQALRGDGVDKRYMALVRGRWETSKKQV------N 194
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQYT 306
A ++T SG+ + + GK A T F + G ++V +P+TGRTHQIRVH ++
Sbjct: 195 APLLKNTLRSGERMVEVTEDGKEALTLFRVLRRFGEFATLVEAKPVTGRTHQIRVHARHA 254
Query: 307 GYPIANDMLYLCEHVT 322
G+ IA D Y E T
Sbjct: 255 GHSIAGDSKYGDEEFT 270
>gi|423561702|ref|ZP_17537978.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A1]
gi|401201959|gb|EJR08824.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A1]
Length = 302
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 111/225 (49%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA---WDVSILQKEPDVLTVCKPP 158
+K + V+ + V V+Y VK +I+ + E + ++ I ++ DVL V KP
Sbjct: 38 IKDDVVTVNGKAVKVNYKVKEEDEITVTIPDPEASDIQPEDMNLEIYYEDADVLVVNKPR 97
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V G++ DL+ + VHR+D+ SGLL++A+N +
Sbjct: 98 GMVVHPAPGHTSGTLVNGLMHHCTDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDMAHES 157
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q+ A V +RY A V+GV P + +D A GR E D GK A
Sbjct: 158 LVNQLVAKTVTRRYKAIVHGVIPHDKGTID------APIGRDKKERQSMTVDE--NGKNA 209
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + ++V C TGRTHQIRVH++Y GYP+A D Y
Sbjct: 210 VTHFQVLERFKDFTLVECRLETGRTHQIRVHMKYIGYPLAGDPKY 254
>gi|238581646|ref|XP_002389677.1| hypothetical protein MPER_11162 [Moniliophthora perniciosa FA553]
gi|215452202|gb|EEB90607.1| hypothetical protein MPER_11162 [Moniliophthora perniciosa FA553]
Length = 175
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 35/182 (19%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G + + Y++ + ++ K RW G+ ++++ + EF+ R +YY
Sbjct: 18 GLKKIPAYWYPYTTYAKERWLGRELLEVVSTEFRDRSMEYY------------------- 58
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSIL--QKEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+ +I + +HRHEPPV A V +L KE + L V KP S+PVH CG+Y +NT+V
Sbjct: 59 ----NGDRIENVVHRHEPPVTATPVKVLLEDKEREFLIVDKPGSIPVHACGRYHRNTLVA 114
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
IL HD F ++ R L+I+ +A A ++ +G V K Y+AR G FPE
Sbjct: 115 ILN--HD----FGYEKVYR----LMIIPTSAICARKVTEEFVSGTVRKEYVARCIGKFPE 164
Query: 236 GE 237
GE
Sbjct: 165 GE 166
>gi|403383409|ref|ZP_10925466.1| RNA pseudouridine synthase ylyB [Kurthia sp. JC30]
Length = 306
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 115/226 (50%), Gaps = 19/226 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMAWDVS--ILQKEPDVLTVCKPP 158
++ G + V+ E V V Y V+ +I EP ++A D++ I+ ++ DVL V KP
Sbjct: 37 IEDGHLLVNGETVKVKYKVQDGDRIEVNAPDPEPLEILAEDLNLEIVYEDEDVLVVNKPK 96
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V G++ DL+ + VHR+D+ SGLL++A+N +
Sbjct: 97 GMVVHPAPGHASGTLVNGLMHHCTDLSGINGIMRPGIVHRIDKDTSGLLMVAKNDLAHEG 156
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
QQ+ V +RY A V+G P + +D A GR + +G GK A
Sbjct: 157 LVQQLVDKTVTRRYTALVHGHIPHDKGTID------APIGRDQKDR-QKMGVVD-NGKHA 208
Query: 272 CTKFTRISTNGT-HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F I GT +++V C TGRTHQIRVH+ Y GYP+ D Y
Sbjct: 209 VTHFQVIGRFGTDYTLVQCRLETGRTHQIRVHMNYIGYPLVGDPKY 254
>gi|423592111|ref|ZP_17568142.1| RluA family pseudouridine synthase [Bacillus cereus VD048]
gi|401232244|gb|EJR38746.1| RluA family pseudouridine synthase [Bacillus cereus VD048]
Length = 302
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 122/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + K + V+ + V +Y VK + +I+ +
Sbjct: 10 AEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSVKGNYKVKGNDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ + ++ DVL V KP + VHP + K T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + ++D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGIID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A GR E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIGRDKKERQSMTVDE--NGKNAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|47570307|ref|ZP_00240954.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
G9241]
gi|47553016|gb|EAL11420.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
G9241]
Length = 302
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 120/245 (48%), Gaps = 19/245 (7%)
Query: 83 VDLFAEEFKGRPYDYYVSA-VKCGRIQVDEEMVPVSYTVKSSQKISHFL-HRHEPPVMAW 140
+D F E G V +K + V+ + V V+Y VK + +I+ + E + A
Sbjct: 18 IDKFVAEINGEWSRSQVQQWIKDDVVTVNGKSVKVNYKVKENDEITVTIPDPEELDIQAE 77
Query: 141 DVS--ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHR 191
D++ I ++ DVL V KP + VHP + T+V G++ DL+ + VHR
Sbjct: 78 DMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGINGVMRPGIVHR 137
Query: 192 LDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAG 251
+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D I +
Sbjct: 138 IDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKER 197
Query: 252 RSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIA 311
+S + GK A T F + ++V C TGRTHQIRVH++Y GYP+A
Sbjct: 198 QSMTVDEN--------GKHAVTHFQVLERFKDFTLVECRLETGRTHQIRVHMKYIGYPLA 249
Query: 312 NDMLY 316
D Y
Sbjct: 250 GDPKY 254
>gi|357236775|ref|ZP_09124118.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
criceti HS-6]
gi|356884757|gb|EHI74957.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
criceti HS-6]
Length = 299
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 114/230 (49%), Gaps = 26/230 (11%)
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-------VSILQKEPDVLT 153
A+K G + V+ ++ Y+VK+ I++ EP D + I+ ++ DV
Sbjct: 30 AIKDGTVLVNSQVKKAKYSVKAGDIITY----EEPEEEVLDYVAQDLPLEIVYEDQDVAV 85
Query: 154 VCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNA 206
+ KP + VHP + T+V +L DL+ + VHR+D+ SGLL++A+N
Sbjct: 86 INKPQGMVVHPSAGHPSGTLVNALLYHIKDLSTINGVVRPGIVHRIDKDTSGLLMIAKND 145
Query: 207 SKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL 266
+++ K +++Y+A V+G P +++ I +A + A +
Sbjct: 146 QAHQALADELKDKKSLRKYLAIVHGNLPNDRGLIEAPIGRSAKDRKKQAVTA-------- 197
Query: 267 KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
KGK A T F + G +++V TGRTHQIRVH+ Y G+PIA D LY
Sbjct: 198 KGKPAVTHFHVLERFGNYTLVELRLETGRTHQIRVHMAYIGHPIAGDPLY 247
>gi|167755826|ref|ZP_02427953.1| hypothetical protein CLORAM_01342 [Clostridium ramosum DSM 1402]
gi|365831520|ref|ZP_09373072.1| RluA family pseudouridine synthase [Coprobacillus sp. 3_3_56FAA]
gi|374625135|ref|ZP_09697552.1| RluA family pseudouridine synthase [Coprobacillus sp. 8_2_54BFAA]
gi|167704765|gb|EDS19344.1| pseudouridine synthase, RluA family [Clostridium ramosum DSM 1402]
gi|365261997|gb|EHM91898.1| RluA family pseudouridine synthase [Coprobacillus sp. 3_3_56FAA]
gi|373916418|gb|EHQ48166.1| RluA family pseudouridine synthase [Coprobacillus sp. 8_2_54BFAA]
Length = 306
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 17/222 (7%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKIS-HFLHRHEPPVMAWDVS--ILQKEPDVLTVCKPP 158
+ G + V+++ SY K + +I L + + D+S I+ ++ DV+ V KP
Sbjct: 36 INQGLVLVNQKKEKASYKTKLNDEIEITILDNVDLDIEPEDISLKIVYEDEDVIVVDKPT 95
Query: 159 SVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP T+V L DL+ + VHR+D+ SGLL++A+N + L
Sbjct: 96 GMIVHPSAGIMHGTLVNALLFHCKDLSGINGVNRPGIVHRIDKETSGLLMVAKNDNAHRL 155
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q++ V++RY+A V+G+ P VD I N +S A T K A
Sbjct: 156 LSKQLKDHTVVRRYVALVHGLIPHEHGKVDAPIGRNPKDRQSMAV-------TRTNSKEA 208
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
T FT + S++ C TGRTHQIRVH+ Y GYP+ D
Sbjct: 209 VTNFTVLKRYNAMSLIECRLETGRTHQIRVHMSYIGYPVYGD 250
>gi|418325040|ref|ZP_12936250.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU071]
gi|418411617|ref|ZP_12984884.1| RluA family pseudouridine synthase [Staphylococcus epidermidis
BVS058A4]
gi|420163463|ref|ZP_14670210.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM095]
gi|420167554|ref|ZP_14674206.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM087]
gi|420185498|ref|ZP_14691590.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM040]
gi|365228946|gb|EHM70118.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU071]
gi|394235152|gb|EJD80726.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM095]
gi|394237582|gb|EJD83068.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM087]
gi|394254484|gb|EJD99453.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM040]
gi|410892343|gb|EKS40137.1| RluA family pseudouridine synthase [Staphylococcus epidermidis
BVS058A4]
Length = 305
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G ++V+ +++ +Y VK + KI E V+ D+ I ++ DV V
Sbjct: 38 IKEGLVKVNGKVIKSNYKVKLNDKIV----VTEKEVVEADIKPENLNLDIYYEDEDVAVV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ DL+ + VHR+D+ SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYSGTLVNGLMYQIKDLSGINGEIRPGIVHRIDKDTSGLLMVAKNDV 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ + V ++Y A V+G P +D I N + +S A D
Sbjct: 154 AHRHLVEQLMSKTVKRKYTALVHGNIPHDYGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + ++++ C+ TGRTHQIRVH++Y GYP+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLIECQLETGRTHQIRVHMKYIGYPLVGDPKY 254
>gi|209559192|ref|YP_002285664.1| ribosomal large subunit pseudouridine synthase [Streptococcus
pyogenes NZ131]
gi|209540393|gb|ACI60969.1| Putative ribosomal large subunit pseudouridine synthase
[Streptococcus pyogenes NZ131]
Length = 296
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ + YTV++ I L + E V+ + + I+ ++ + + K
Sbjct: 31 IKQGLVLVNGQQKKAKYTVQAGDVICFELPKEE--VLEYQAQNIPLDIIYEDDTLAIITK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP G + T+V L DL+ + VHR+D+ SGLL++A+ +
Sbjct: 89 PQGMVVHPSGGHPSGTMVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKTDAAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
++++A K +++Y+A V+G P +++ I + + A + KGK
Sbjct: 149 QALAEELKAKKSLRKYLAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+FT + G +S+V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 201 EAVTRFTVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|228940981|ref|ZP_04103539.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228973912|ref|ZP_04134487.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228980501|ref|ZP_04140811.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis Bt407]
gi|384187953|ref|YP_005573849.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar chinensis CT-43]
gi|410676268|ref|YP_006928639.1| pseudouridine synthase, RluA family [Bacillus thuringiensis Bt407]
gi|423385394|ref|ZP_17362650.1| RluA family pseudouridine synthase [Bacillus cereus BAG1X1-2]
gi|423528248|ref|ZP_17504693.1| RluA family pseudouridine synthase [Bacillus cereus HuB1-1]
gi|452200334|ref|YP_007480415.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|228779321|gb|EEM27578.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis Bt407]
gi|228785778|gb|EEM33782.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228818660|gb|EEM64727.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|326941662|gb|AEA17558.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar chinensis CT-43]
gi|401635450|gb|EJS53205.1| RluA family pseudouridine synthase [Bacillus cereus BAG1X1-2]
gi|402451911|gb|EJV83730.1| RluA family pseudouridine synthase [Bacillus cereus HuB1-1]
gi|409175397|gb|AFV19702.1| pseudouridine synthase, RluA family [Bacillus thuringiensis Bt407]
gi|452105727|gb|AGG02667.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 302
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA-----WDVSILQKEPDVLTVCK 156
+K + V+ + V V+Y VK +I+ + EP + ++ I ++ DVL V K
Sbjct: 38 IKDDVVTVNGKAVKVNYKVKEEDEITVTIP--EPEALDIQPEDLNLEIYYEDADVLVVNK 95
Query: 157 PPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V G++ DL+ + VHR+D+ SGLL++A+N
Sbjct: 96 PRGMVVHPAPGHTSGTLVNGLMHHCTDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDMAH 155
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ Q+ A V +RY A V+GV P + +D A GR E D GK
Sbjct: 156 ESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID------APIGRDKKERQSMTVDE--NGK 207
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F + ++V C TGRTHQIRVH++Y GYP+A D Y
Sbjct: 208 NAVTHFQVLERFKDFTLVECRLETGRTHQIRVHMKYIGYPLAGDPKY 254
>gi|27467790|ref|NP_764427.1| hypothetical protein SE0872 [Staphylococcus epidermidis ATCC 12228]
gi|251810627|ref|ZP_04825100.1| pseudouridylate synthase RluD [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876372|ref|ZP_06285239.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
SK135]
gi|293366838|ref|ZP_06613514.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
epidermidis M23864:W2(grey)]
gi|417645949|ref|ZP_12295834.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU144]
gi|417656685|ref|ZP_12306368.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU028]
gi|417659000|ref|ZP_12308613.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU045]
gi|417909918|ref|ZP_12553651.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU037]
gi|417910758|ref|ZP_12554474.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU105]
gi|417913405|ref|ZP_12557072.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU109]
gi|418605391|ref|ZP_13168716.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU041]
gi|418606366|ref|ZP_13169647.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU057]
gi|418609911|ref|ZP_13173045.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU065]
gi|418616684|ref|ZP_13179608.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU120]
gi|418622149|ref|ZP_13184905.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU123]
gi|418628931|ref|ZP_13191447.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU127]
gi|418664731|ref|ZP_13226197.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU081]
gi|419768696|ref|ZP_14294812.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-250]
gi|419772590|ref|ZP_14298621.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-K]
gi|420165264|ref|ZP_14671968.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM088]
gi|420169741|ref|ZP_14676319.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM070]
gi|420172802|ref|ZP_14679300.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM067]
gi|420182867|ref|ZP_14689000.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM049]
gi|420187597|ref|ZP_14693617.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM039]
gi|420194065|ref|ZP_14699894.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM021]
gi|420197089|ref|ZP_14702813.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM020]
gi|420202088|ref|ZP_14707683.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM018]
gi|420206482|ref|ZP_14711992.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM008]
gi|420209523|ref|ZP_14714960.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM003]
gi|420211911|ref|ZP_14717267.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM001]
gi|420214322|ref|ZP_14719601.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH05005]
gi|420216152|ref|ZP_14721374.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH05001]
gi|420219978|ref|ZP_14724968.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH04008]
gi|420222011|ref|ZP_14726936.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH08001]
gi|420224873|ref|ZP_14729711.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH06004]
gi|420226988|ref|ZP_14731761.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH05003]
gi|420229310|ref|ZP_14734016.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH04003]
gi|420231669|ref|ZP_14736314.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH051668]
gi|420234356|ref|ZP_14738920.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH051475]
gi|421607301|ref|ZP_16048547.1| hypothetical protein B440_03088 [Staphylococcus epidermidis
AU12-03]
gi|27315334|gb|AAO04469.1|AE016746_259 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|251805787|gb|EES58444.1| pseudouridylate synthase RluD [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295397|gb|EFA87924.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
SK135]
gi|291319139|gb|EFE59509.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
epidermidis M23864:W2(grey)]
gi|329729961|gb|EGG66352.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU144]
gi|329736346|gb|EGG72618.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU028]
gi|329736639|gb|EGG72905.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU045]
gi|341652527|gb|EGS76315.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU037]
gi|341654946|gb|EGS78682.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU105]
gi|341655687|gb|EGS79411.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU109]
gi|374402488|gb|EHQ73513.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU041]
gi|374406247|gb|EHQ77150.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU065]
gi|374408319|gb|EHQ79150.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU057]
gi|374410177|gb|EHQ80938.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU081]
gi|374820762|gb|EHR84838.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU120]
gi|374827524|gb|EHR91386.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU123]
gi|374834925|gb|EHR98556.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU127]
gi|383359217|gb|EID36647.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-K]
gi|383359522|gb|EID36945.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-250]
gi|394236431|gb|EJD81965.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM088]
gi|394241479|gb|EJD86893.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM067]
gi|394243041|gb|EJD88415.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM070]
gi|394249330|gb|EJD94543.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM049]
gi|394256039|gb|EJE00975.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM039]
gi|394265896|gb|EJE10542.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM020]
gi|394266763|gb|EJE11388.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM021]
gi|394270061|gb|EJE14584.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM018]
gi|394278321|gb|EJE22638.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM008]
gi|394278970|gb|EJE23282.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM003]
gi|394280421|gb|EJE24702.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM001]
gi|394283687|gb|EJE27852.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH05005]
gi|394286985|gb|EJE30959.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH04008]
gi|394290042|gb|EJE33912.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH08001]
gi|394292602|gb|EJE36344.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH05001]
gi|394294276|gb|EJE37962.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH06004]
gi|394297489|gb|EJE41086.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH05003]
gi|394299076|gb|EJE42627.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH04003]
gi|394302211|gb|EJE45659.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH051668]
gi|394304318|gb|EJE47724.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIH051475]
gi|406657093|gb|EKC83486.1| hypothetical protein B440_03088 [Staphylococcus epidermidis
AU12-03]
Length = 305
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G ++V+ +++ +Y VK + KI E V+ D+ I ++ DV V
Sbjct: 38 IKEGLVKVNGKVIKSNYKVKLNDKIV----VTEKEVVEADIKPENLNLDIYYEDEDVAVV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ DL+ + VHR+D+ SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYSGTLVNGLMYQIKDLSGINGEIRPGIVHRIDKDTSGLLMVAKNDV 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ + V ++Y A V+G P +D I N + +S A D
Sbjct: 154 AHRHLVEQLMSKTVKRKYTALVHGNIPHDYGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + ++++ C+ TGRTHQIRVH++Y GYP+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLIECQLETGRTHQIRVHMKYIGYPLVGDPKY 254
>gi|229134702|ref|ZP_04263511.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST196]
gi|423518584|ref|ZP_17495065.1| RluA family pseudouridine synthase [Bacillus cereus HuA2-4]
gi|228648748|gb|EEL04774.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST196]
gi|401160792|gb|EJQ68167.1| RluA family pseudouridine synthase [Bacillus cereus HuA2-4]
Length = 302
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 122/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + K + V+ + V +Y VK + +I+ +
Sbjct: 10 AEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSVKGNYKVKGNDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ + ++ DVL V KP + VHP + K T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + ++D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGIID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A GR E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIGRDKKERQSMTVDE--NGKNAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|414158276|ref|ZP_11414570.1| RluA family pseudouridine synthase [Streptococcus sp. F0441]
gi|410870821|gb|EKS18778.1| RluA family pseudouridine synthase [Streptococcus sp. F0441]
Length = 296
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ + YTV+ +++ H EP V+ + + I+ ++ V V K
Sbjct: 31 IKAGQVLVNGQAKKAKYTVQEGDIVTY--HVPEPEVLEYVAEELPLEIIYQDEHVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYTLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|335427885|ref|ZP_08554805.1| RluA family pseudouridine synthase [Haloplasma contractile SSD-17B]
gi|334893811|gb|EGM32020.1| RluA family pseudouridine synthase [Haloplasma contractile SSD-17B]
Length = 292
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 13/179 (7%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTV---VGILQAEHDL-APLFPVHRLDRLVS 197
+ I+ ++ D++ + K P + VHP + NT+ + E +L + V+RLD S
Sbjct: 82 LDIVFEDNDIIVINKEPHLVVHPTKSHHHNTIANRIAYYFREKNLNRKIRFVNRLDMDTS 141
Query: 198 GLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAES 257
GLLI+A+N +Q E VIK Y+A VNG + V++ I + G+ +S
Sbjct: 142 GLLIVAKNPYAHQYLAKQFEKNTVIKEYLAFVNGKLEDKHGVINQPIKKDEDTGKYIVDS 201
Query: 258 GDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK++ T+F I HS+V C +GRTHQIRVHL G+PI +D LY
Sbjct: 202 N---------GKSSVTEFEVIKEMKDHSLVKCRLKSGRTHQIRVHLSTLGHPIISDSLY 251
>gi|225856592|ref|YP_002738103.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae P1031]
gi|410476372|ref|YP_006743131.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae gamPNI0373]
gi|444388734|ref|ZP_21186708.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS125219]
gi|444389940|ref|ZP_21187855.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS70012]
gi|444393508|ref|ZP_21191153.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS81218]
gi|444395825|ref|ZP_21193364.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0002]
gi|444397385|ref|ZP_21194868.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0006]
gi|444399112|ref|ZP_21196584.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0007]
gi|444403348|ref|ZP_21200450.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0008]
gi|444405523|ref|ZP_21202399.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0009]
gi|444408601|ref|ZP_21205234.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0010]
gi|444409603|ref|ZP_21206191.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0076]
gi|444411719|ref|ZP_21208047.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0153]
gi|444415857|ref|ZP_21212078.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0199]
gi|444418513|ref|ZP_21214489.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0360]
gi|444420512|ref|ZP_21216291.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0427]
gi|444422565|ref|ZP_21218216.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0446]
gi|225724891|gb|ACO20743.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae P1031]
gi|406369317|gb|AFS43007.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae gamPNI0373]
gi|444248380|gb|ELU54889.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS125219]
gi|444255826|gb|ELU62166.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0002]
gi|444256403|gb|ELU62741.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS70012]
gi|444259284|gb|ELU65599.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS81218]
gi|444260042|gb|ELU66350.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0006]
gi|444264632|gb|ELU70695.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0008]
gi|444269298|gb|ELU75109.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0007]
gi|444269428|gb|ELU75235.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0010]
gi|444273134|gb|ELU78813.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0009]
gi|444275616|gb|ELU81238.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0153]
gi|444278844|gb|ELU84268.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0199]
gi|444279137|gb|ELU84547.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0076]
gi|444281303|gb|ELU86627.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0360]
gi|444284479|gb|ELU89617.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0427]
gi|444288071|gb|ELU92973.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0446]
Length = 295
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ A GRS + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIE------APIGRSEKDRKKQA--VIAKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y +P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIDHPVAGDEVY 247
>gi|163941632|ref|YP_001646516.1| RluA family pseudouridine synthase [Bacillus weihenstephanensis
KBAB4]
gi|229013077|ref|ZP_04170242.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
DSM 2048]
gi|423489069|ref|ZP_17465751.1| RluA family pseudouridine synthase [Bacillus cereus BtB2-4]
gi|423494794|ref|ZP_17471438.1| RluA family pseudouridine synthase [Bacillus cereus CER057]
gi|423498414|ref|ZP_17475031.1| RluA family pseudouridine synthase [Bacillus cereus CER074]
gi|423598796|ref|ZP_17574796.1| RluA family pseudouridine synthase [Bacillus cereus VD078]
gi|423661268|ref|ZP_17636437.1| RluA family pseudouridine synthase [Bacillus cereus VDM022]
gi|423669467|ref|ZP_17644496.1| RluA family pseudouridine synthase [Bacillus cereus VDM034]
gi|423674354|ref|ZP_17649293.1| RluA family pseudouridine synthase [Bacillus cereus VDM062]
gi|163863829|gb|ABY44888.1| pseudouridine synthase, RluA family [Bacillus weihenstephanensis
KBAB4]
gi|228748331|gb|EEL98191.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
DSM 2048]
gi|401150887|gb|EJQ58339.1| RluA family pseudouridine synthase [Bacillus cereus CER057]
gi|401160463|gb|EJQ67841.1| RluA family pseudouridine synthase [Bacillus cereus CER074]
gi|401237066|gb|EJR43523.1| RluA family pseudouridine synthase [Bacillus cereus VD078]
gi|401298594|gb|EJS04194.1| RluA family pseudouridine synthase [Bacillus cereus VDM034]
gi|401301309|gb|EJS06898.1| RluA family pseudouridine synthase [Bacillus cereus VDM022]
gi|401309905|gb|EJS15238.1| RluA family pseudouridine synthase [Bacillus cereus VDM062]
gi|402432317|gb|EJV64376.1| RluA family pseudouridine synthase [Bacillus cereus BtB2-4]
Length = 302
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 122/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + K + V+ + V +Y VK + +I+ +
Sbjct: 10 AEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSVKGNYKVKGNDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ + ++ DVL V KP + VHP + K T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + ++D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGIID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A GR E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIGRDKKERQSMTVDE--NGKNAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|365157073|ref|ZP_09353354.1| RluA family pseudouridine synthase [Bacillus smithii 7_3_47FAA]
gi|363625807|gb|EHL76818.1| RluA family pseudouridine synthase [Bacillus smithii 7_3_47FAA]
Length = 303
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA-----WDVSILQKEPDVLTVCK 156
+K GR+ V+ V +Y ++ +I + EP V+ D+ I ++ DV+ V K
Sbjct: 37 IKEGRVTVNGATVKANYKCEADDRI--VISVPEPEVLEITPENMDLDIYYEDRDVIVVNK 94
Query: 157 PPSVPVHPCGQYRKNTVV-GILQAEHDLA----PLFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V G++ DL+ L P VHR+D+ SGLL+ A+N
Sbjct: 95 PRGMVVHPAPGHLSGTLVNGLMAHCKDLSGINGVLRPGIVHRIDKDTSGLLMAAKNDYAH 154
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ QQ+ V ++Y A V+GV P +D I + + A + GK
Sbjct: 155 EKLSQQLSNKTVTRKYKAIVHGVIPHDVGTIDAPIGRDPKDRQKMAVVEN--------GK 206
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F + +S++ CE TGRTHQIRVH++Y G+P+A D Y
Sbjct: 207 HAVTHFRVLERFSQYSLIECELETGRTHQIRVHMKYIGHPLAGDPKY 253
>gi|418324596|ref|ZP_12935830.1| pseudouridine synthase, RluA family [Staphylococcus pettenkoferi
VCU012]
gi|365225283|gb|EHM66528.1| pseudouridine synthase, RluA family [Staphylococcus pettenkoferi
VCU012]
Length = 305
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA---WDVSILQKEPDVLTVCKPP 158
+K G ++V++++V +Y VK++ I E + ++ I ++ DV V KP
Sbjct: 38 IKEGLVKVNDKVVKANYKVKANDVIEVTEKEVEEADIQPEDLNLDIYYEDDDVAIVYKPK 97
Query: 159 SVPVHPC-GQYRKNTVVGILQAEHDLAPLFP------VHRLDRLVSGLLILARNASKADL 211
+ VHP G Y V G++ +L+ + VHR+D+ SGLL++A+N
Sbjct: 98 GMVVHPSPGHYSGTLVNGLMYQMQNLSGINGEVRPGIVHRIDKDTSGLLMVAKNDVAHRS 157
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q+ A V ++Y A V+G P +D I N + ++ A D GK A
Sbjct: 158 LVEQLMAKTVTRKYSALVHGNIPHNYGTIDAPIGRNKNDRQAMAVVDD--------GKEA 209
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F +++V CE TGRTHQIRVH++Y GYP+ D Y
Sbjct: 210 VTHFDVKEHFKKYTLVECELETGRTHQIRVHMKYIGYPLVGDPKY 254
>gi|320581259|gb|EFW95480.1| dolichyl-phosphate beta-glucosyltransferase [Ogataea parapolymorpha
DL-1]
Length = 898
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 120/282 (42%), Gaps = 64/282 (22%)
Query: 116 VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+S +K I +H HEPP++ + + ++ DVL V KP +P+HP + NT+
Sbjct: 656 LSEKLKQGDVIVRHVHVHEPPIVDAKIQTVYEDDDVLVVNKPAGMPIHPVQNFYYNTM-- 713
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
+ +KA + I+ +V K Y+ARV G PE
Sbjct: 714 -----------------------------SVAKAKEIQAAIKNKQVRKVYVARVAGKIPE 744
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT--HSIVLCEPIT 293
D + E+ L D + K+A T F R++ + SIV C P+T
Sbjct: 745 SLVCEDDVV---------IVETKRGLKDG-IDRKSATTVFKRLNYSSVLDESIVECRPLT 794
Query: 294 GRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHHSPPPVS---SDKSES 350
GRTHQIR+HL+ G+PI ND LY R G+ A +S P V + ++ES
Sbjct: 795 GRTHQIRIHLRNLGFPIVNDQLY-------RHGL----LATNEDYSDPDVFQRIAKEAES 843
Query: 351 SSEDFSIDPMCTNCPNLAPKGKRLLSSNSLEDLC-YGHMRQY 391
S E+ C C GKRL L Y H R+Y
Sbjct: 844 SREEQLTGEFCEEC------GKRLFKRPEPGKLVLYLHAREY 879
>gi|407977667|ref|ZP_11158504.1| pseudouridylate synthase [Bacillus sp. HYC-10]
gi|407415920|gb|EKF37501.1| pseudouridylate synthase [Bacillus sp. HYC-10]
Length = 304
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 113/227 (49%), Gaps = 21/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM-----AWDVSILQKEPDVLTVCK 156
VK G I+V+ + V +Y V++ +I + +P + + D+ I ++ DVL V K
Sbjct: 37 VKDGLIEVNGKHVKANYKVQAGDQIK--VEIPDPEALNVEAESMDLDIYYEDADVLVVNK 94
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L A +DL+ + VHR+D+ SGLL++A+N
Sbjct: 95 PRGMVVHPAPGHVSGTLVNGLMAHCNDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDLAH 154
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ Q+ A V ++Y A V+G+ +D A GR + S+ T K
Sbjct: 155 ESLVNQLVAKTVTRKYTAVVHGIIQHDTGTID------APIGRDKKDR-QSMTVTKENAK 207
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F I ++V C TGRTHQIRVH++Y GYP+A D Y
Sbjct: 208 QAVTHFDVIERFKDFTVVECRLETGRTHQIRVHMKYIGYPLAGDPKY 254
>gi|237734795|ref|ZP_04565276.1| ribosomal large subunit pseudouridine synthase D [Mollicutes
bacterium D7]
gi|229382123|gb|EEO32214.1| ribosomal large subunit pseudouridine synthase D [Coprobacillus sp.
D7]
Length = 316
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 17/222 (7%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKIS-HFLHRHEPPVMAWDVS--ILQKEPDVLTVCKPP 158
+ G + V+++ SY K + +I L + + D+S I+ ++ DV+ V KP
Sbjct: 46 INQGLVLVNQKKEKASYKTKLNDEIEITILDNVDLDIEPEDISLKIVYEDEDVIVVDKPT 105
Query: 159 SVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP T+V L DL+ + VHR+D+ SGLL++A+N + L
Sbjct: 106 GMIVHPSAGIMHGTLVNALLFHCKDLSGINGVNRPGIVHRIDKETSGLLMVAKNDNAHRL 165
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q++ V++RY+A V+G+ P VD I N +S A T K A
Sbjct: 166 LSKQLKDHTVVRRYVALVHGLIPHEHGKVDAPIGRNPKDRQSMAV-------TRTNSKEA 218
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
T FT + S++ C TGRTHQIRVH+ Y GYP+ D
Sbjct: 219 VTNFTVLKRYNAMSLIECRLETGRTHQIRVHMSYIGYPVYGD 260
>gi|377809731|ref|YP_005004952.1| RluA family pseudouridine synthase [Pediococcus claussenii ATCC
BAA-344]
gi|361056472|gb|AEV95276.1| pseudouridine synthase, RluA family protein [Pediococcus claussenii
ATCC BAA-344]
Length = 301
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 118/246 (47%), Gaps = 21/246 (8%)
Query: 80 KTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM- 138
KTI F+E + R + +K G + V+ E Y + + + EP +
Sbjct: 18 KTITKNFSELTRSR----IQNLIKHGNVLVNGESTVNRYKLSVGDYVQILIPDPEPTEVI 73
Query: 139 --AWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL------FPVH 190
++ I+ ++ DV+ + KP + VHP ++ T+V L A LA + VH
Sbjct: 74 PEKMNLDIIYEDDDVIVINKPQGMVVHPAPGHKNGTLVNGLLAHTPLATINGEFRPGIVH 133
Query: 191 RLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASA 250
R+D+ SGLL++A+N +Q++ +RY+A V+G E +D A
Sbjct: 134 RIDKDTSGLLMVAKNDDALISLSKQLKDKTTKRRYLAIVHGNITEDSGKID------API 187
Query: 251 GRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPI 310
GRS + D G+ A T F + G ++++ C TGRTHQIRVHL+Y G+P+
Sbjct: 188 GRSKKDRKKM--DVIADGRHAVTHFKVLKRFGEYTLIECILETGRTHQIRVHLKYIGHPV 245
Query: 311 ANDMLY 316
A D LY
Sbjct: 246 AGDPLY 251
>gi|355641291|ref|ZP_09052176.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
2_1_26]
gi|354830889|gb|EHF14921.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
2_1_26]
Length = 318
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 119/251 (47%), Gaps = 18/251 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ V Y +++ ++ R
Sbjct: 21 AGQRIDNFLIARLKGAPKTLIYRILRKGEVRVNKGRVKPDYRLQAGDQVRVPPLRLAERD 80
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ V KP + VH + Q D +
Sbjct: 81 EPAPLAQGLLERMEAAIVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQLRPDAKDIE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVI-KRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SGLL++A+ S + + K++ KRY A V G +P G++ N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHEALRGEKIVDKRYHALVRGHWPAGKK------NV 194
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
A ++ SG+ + + ++GK A T+F + G ++V PITGRTHQIRVH ++
Sbjct: 195 RAPLLKNNLRSGERMVEVNVEGKDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKH 254
Query: 306 TGYPIANDMLY 316
G+ IA D Y
Sbjct: 255 AGHAIAGDPKY 265
>gi|25011477|ref|NP_735872.1| hypothetical protein gbs1435 [Streptococcus agalactiae NEM316]
gi|24413015|emb|CAD47094.1| unknown [Streptococcus agalactiae NEM316]
Length = 296
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMAWDVS--ILQKEPDVLTVCKPP 158
+K G + V+ ++ YTV+ +I+ + + E A ++S I+ ++ DV V KP
Sbjct: 31 IKKGIVLVNGQVKKAKYTVQEGDRITFDIPKEEVLDYQAENISLDIIYQDDDVAVVNKPQ 90
Query: 159 SVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V L DL+ + VHR+D+ SGLL++A+N +
Sbjct: 91 GMVVHPSAGHSSGTLVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKNDRAHQV 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
++++ K +++Y+A V+G P V++ A GRS + KGK A
Sbjct: 151 LAEELKDKKSLRKYLAIVHGNLPNDRGVIE------APIGRSDKDRKKQA--VTAKGKPA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+F + G +++V TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 ITRFHVLERFGDYTLVELSLETGRTHQIRVHMAYIGHPLAGDSVY 247
>gi|77406381|ref|ZP_00783442.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae H36B]
gi|77175005|gb|EAO77813.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae H36B]
Length = 296
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ ++ YTV+ +I+ + + E V+ + + I+ ++ DV V K
Sbjct: 31 IKKGIVLVNGQVKKAKYTVQEGDRITFDIPKKE--VLDYQAENIPLDIIYQDDDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHSSGTLVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKNDRAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ ++++ K +++Y+A V+G P + V++ A GRS + KGK
Sbjct: 149 QVLAEELKDKKSLRKYLAIVHGNLPNDQGVIE------APIGRSDKDRKKQA--VTAKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGDYTLVELSLETGRTHQIRVHMAYIGHPLAGDPVY 247
>gi|425736769|ref|ZP_18855045.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
massiliensis S46]
gi|425483241|gb|EKU50393.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
massiliensis S46]
Length = 304
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 120/259 (46%), Gaps = 34/259 (13%)
Query: 68 EFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS 127
+F+ + W+ + DL EE I+V+++ V +Y +K +I
Sbjct: 19 KFLPEQNDAWSRSQVQDLIKEEL----------------IKVNDKAVKSNYKIKEHDRIV 62
Query: 128 HFLHRH-EPPVMAWDVS--ILQKEPDVLTVCKPPSVPVHPC-GQYRKNTVVGILQAEHDL 183
E ++ D++ I ++ DV V KP + VHP G Y V G++ DL
Sbjct: 63 VSEKETVEADILPEDLNLDIYFEDEDVAIVYKPKGMVVHPAPGHYSNTLVNGLMYQMTDL 122
Query: 184 A----PLFP--VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237
+ + P VHR+D+ SGLL++A+N Q+ V ++Y+A V+GV P
Sbjct: 123 SGINGEIRPGIVHRIDKDTSGLLMVAKNDIAHRSLVDQLVDKTVTRKYVALVHGVIPHDY 182
Query: 238 QVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTH 297
VD I N + ++ A D G+ A T F + ++++ C TGRTH
Sbjct: 183 GTVDAPIGRNKNDRQAMAVEDD--------GRDAITHFDVLQRFKNYTLIECRLETGRTH 234
Query: 298 QIRVHLQYTGYPIANDMLY 316
QIRVH++Y GYP+ D Y
Sbjct: 235 QIRVHMKYIGYPLVGDPKY 253
>gi|452974551|gb|EME74371.1| RNA-pseudouridine synthase YlyB [Bacillus sonorensis L12]
Length = 304
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 111/226 (49%), Gaps = 19/226 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMA--WDVSILQKEPDVLTVCKPP 158
+K R+QV+++ V +Y V+ + + EP V+A D+ I ++ DVL V KP
Sbjct: 37 IKEERVQVNDKAVKANYKVQPGDVVIVDVPEPEPLDVLAEPMDLDIYYEDQDVLVVNKPR 96
Query: 159 SVPVHPCGQYRKNTVVGILQAEHD--------LAPLFPVHRLDRLVSGLLILARNASKAD 210
+ VHP + T+V L A D + P VHR+D+ SGLL++A+N +
Sbjct: 97 GMVVHPAPGHLTGTLVNGLMAHCDDLSGINGVMRPGI-VHRIDKDTSGLLMVAKNDMAHE 155
Query: 211 LFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKA 270
Q+ V ++Y A V+GV P +D A GR + S+ T GK
Sbjct: 156 SLVNQLVKKTVTRKYTALVHGVIPHDHGTID------APIGRDKKDR-QSMTVTRENGKH 208
Query: 271 ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F ++V C TGRTHQIRVH++Y G+P+A D Y
Sbjct: 209 AVTHFEVKERFDDFTVVECRLETGRTHQIRVHMKYIGFPLAGDPKY 254
>gi|300704630|ref|YP_003746233.1| ribosomal large subunit pseudouridine synthase c [Ralstonia
solanacearum CFBP2957]
gi|299072294|emb|CBJ43627.1| Ribosomal large subunit pseudouridine synthase C [Ralstonia
solanacearum CFBP2957]
Length = 350
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 113/248 (45%), Gaps = 16/248 (6%)
Query: 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPP-- 136
G+ I + KG P + ++ G ++V++ + Y +K + R P
Sbjct: 40 GQRIDNFLMRLAKGVPKSHIYRILRSGEVRVNKGRIDAEYRLKLGDLVRIPPLRIAQPSA 99
Query: 137 --------VMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP 188
V A + +IL ++ +L + KP V VH + + ++ D L
Sbjct: 100 EQVEAARAVPAAEFTILHEDTHLLVIDKPAGVAVHGGSGVAFGVIEQLRRSRPDAKFLEL 159
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNA 248
VHRLDR SG+L+LA+ S +QI G++ KRY A V GV+P Q + A
Sbjct: 160 VHRLDRETSGVLLLAKKRSALVALHEQIREGQLDKRYFAAVKGVWPHQRQ------HIKA 213
Query: 249 SAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGY 308
+ T G+ G+ + T F ++ G ++++ E TGRTHQIRVHL + G+
Sbjct: 214 PLFKYTTPEGERRVRVQADGQPSHTIFNKVGVFGPYTLLEAELKTGRTHQIRVHLAHAGF 273
Query: 309 PIANDMLY 316
PI D Y
Sbjct: 274 PILGDDKY 281
>gi|338997099|ref|ZP_08635804.1| ribosomal large subunit pseudouridine synthase C [Halomonas sp.
TD01]
gi|338766172|gb|EGP21099.1| ribosomal large subunit pseudouridine synthase C [Halomonas sp.
TD01]
Length = 313
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 120/263 (45%), Gaps = 19/263 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
AG+ I + KG P V+ G ++V+++ V V Y +++ + R P
Sbjct: 17 AGQRIDNFLMTRLKGAPRALIYRIVRKGEVRVNKKRVKVDYRLQAGDLVRVPPLRLAPRE 76
Query: 138 MAWDVS----------ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
+VS ++ + PD + + KP + VH + + + Q DL L
Sbjct: 77 AVKEVSDNLRDLLIGSVIMEGPDWMVINKPSGLAVHGGSGVKIGLIEALRQVRDDLTFLE 136
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SG L+LA++ + ++ + KRY+A V+G +P + V ++
Sbjct: 137 LVHRLDRDTSGCLLLAKSRDALVTLNESLKKHAMDKRYLALVSGRWPARKTYVSARLD-- 194
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTG 307
R A +G+ GK + T F+ + T +++ EP+TGRTHQIRVH + G
Sbjct: 195 ----RFDAGNGERRVRVDPNGKVSRTHFSVVETFEKVTLIEAEPVTGRTHQIRVHAAHAG 250
Query: 308 YPIANDMLYLCE---HVTHREGM 327
+ + D Y H+ R G+
Sbjct: 251 HALLGDDKYGTRESNHMAQRLGL 273
>gi|163790406|ref|ZP_02184837.1| Pseudouridylate synthase, 23S rRNA-specific [Carnobacterium sp.
AT7]
gi|159874310|gb|EDP68383.1| Pseudouridylate synthase, 23S rRNA-specific [Carnobacterium sp.
AT7]
Length = 301
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + V+ E + +Y V+ S +I EP +++ +V I+ ++ DV+ V
Sbjct: 36 IKEGNVTVNGENLKANYKVQPSDEIVII----EPELVSLEVLAEDIPIEIVYQDEDVVVV 91
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNAS 207
K + VHP ++ T+V L DL+ + VHR+D+ SGLL++A+N S
Sbjct: 92 NKAQGMVVHPSAGHQTGTLVNALMYHIKDLSGINGTIRPGIVHRIDKDTSGLLMVAKNDS 151
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ Q++ ++ YIA V+GV P + +D A GRS + D
Sbjct: 152 AHEKLAAQLKDKTSLREYIALVHGVIPHEKGTID------APLGRSKVDRKKQ--DIIDG 203
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
G+ A T FT + ++V + TGRTHQIRVH++Y GYP+A D +Y
Sbjct: 204 GREAVTHFTVLERFKDFTLVSLKLETGRTHQIRVHMKYIGYPLAGDPIY 252
>gi|157150916|ref|YP_001450379.1| RluA family pseudouridine synthase [Streptococcus gordonii str.
Challis substr. CH1]
gi|157075710|gb|ABV10393.1| pseudouridine synthase, RluA family [Streptococcus gordonii str.
Challis substr. CH1]
Length = 296
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD---VSILQKEPDVLTVCKPP 158
+K G+I V+ + YTVK IS+ L E + + I+ ++ DV V KP
Sbjct: 31 IKTGKILVNGLVKKAKYTVKEGDVISYELPEIEEIEYVTENIPLEIVYQDEDVAVVNKPQ 90
Query: 159 SVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 GMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAHVA 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+++ K +++Y A V+G P V++ I + + A + KGK A
Sbjct: 151 LADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGKPA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 LTRFQVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|229031524|ref|ZP_04187524.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1271]
gi|228729813|gb|EEL80793.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1271]
Length = 302
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 121/253 (47%), Gaps = 31/253 (12%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFL-HR 132
AEE K D +V+ + K + V+ + V V+Y VK + +I+ +
Sbjct: 10 AEEQKSERIDKFVAEINSEWSRSQVQQWIKEDVVTVNGKSVKVNYKVKENDEITVTIPDP 69
Query: 133 HEPPVMAWDVS--ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL--- 186
E + A D++ I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGINGV 129
Query: 187 ---FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVN 243
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 130 MRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID-- 187
Query: 244 INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHL 303
A R E D GK A T F I ++V C TGRTHQIRVH+
Sbjct: 188 ----APIARDKKERQSMTVDE--NGKHAVTHFQVIERFKDFTLVECRLETGRTHQIRVHM 241
Query: 304 QYTGYPIANDMLY 316
+Y GYP+A D Y
Sbjct: 242 KYIGYPLAGDPKY 254
>gi|418964654|ref|ZP_13516445.1| pseudouridine synthase, RluA family [Streptococcus constellatus
subsp. constellatus SK53]
gi|383344668|gb|EID22825.1| pseudouridine synthase, RluA family [Streptococcus constellatus
subsp. constellatus SK53]
Length = 298
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G+I V+ ++ Y VK+ I++ L EP M + + I+ ++ DV V K
Sbjct: 31 IKNGQILVNGQVKKAKYAVKAGDVITYELP--EPEAMEYVAEDLPLDIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
+ VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 AQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I N + A + KGK
Sbjct: 149 IKLADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRNEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 SAVTRFHVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|313108160|ref|ZP_07794295.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa 39016]
gi|386067005|ref|YP_005982309.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa NCGM2.S1]
gi|310880797|gb|EFQ39391.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa 39016]
gi|348035564|dbj|BAK90924.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa NCGM2.S1]
Length = 326
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 18/251 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ + Y +++ ++ R
Sbjct: 29 AGQRIDNFLIARLKGAPKTLIYRILRKGEVRVNKGRIKPDYRLQAGDQVRVPPLRLAERD 88
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ V KP + VH + Q D +
Sbjct: 89 EPAPLAQGLLERMEAAIVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQLRPDAKDIE 148
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVI-KRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SGLL++A+ S + + K++ KRY A V G +P G++ N
Sbjct: 149 LVHRLDRDTSGLLMIAKKRSMLRHLHEALRGEKIVDKRYHALVRGHWPAGKK------NV 202
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
A ++ SG+ + + ++GK A T+F + G ++V PITGRTHQIRVH ++
Sbjct: 203 RAPLLKNNLRSGERMVEVNVEGKDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKH 262
Query: 306 TGYPIANDMLY 316
G+ IA D Y
Sbjct: 263 AGHAIAGDPKY 273
>gi|306831623|ref|ZP_07464781.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325978527|ref|YP_004288243.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|304426408|gb|EFM29522.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325178455|emb|CBZ48499.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 298
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 113/227 (49%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ + V Y VK +++ + + E V+ + + I+ ++ DV V K
Sbjct: 31 IKKGTVLVNGKAVKAKYAVKVGDVVTYEVPKEE--VLEYTAENIPLDIIYEDDDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSVGHTSGTLVNALMYHIKDLSSINGVIRPGIVHRIDKDTSGLLMIAKNDKAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ +++ K +++Y+A V+G P V++ A GRS E KGK
Sbjct: 149 NALAAELKDKKSLRKYVAIVHGNIPNDRGVIE------APIGRS--EKDRKKQAVTAKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F + G +++V TGRTHQIRVH+ Y GYP+A D LY
Sbjct: 201 PAVTHFKVLERFGNYTLVELTLETGRTHQIRVHMAYIGYPVAGDPLY 247
>gi|424673064|ref|ZP_18110007.1| pseudouridine synthase, RluA family [Enterococcus faecalis 599]
gi|402352874|gb|EJU87710.1| pseudouridine synthase, RluA family [Enterococcus faecalis 599]
Length = 310
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM---AWDV--SILQKEPDVLTVCK 156
+K + V+ E V +Y V + +I + EP V+ A D+ +I+ ++ DV+ V K
Sbjct: 44 LKEKHVTVNGETVRANYKVTAGDEI--VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNK 101
Query: 157 PPSVPVHPCGQYRKNTVVGIL--QAEH-----DLAPLFPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L A+H D+ VHR+D+ SGLL++A+N
Sbjct: 102 PQGMVVHPSVGHPNGTLVNALLHHADHLSAINDVVRPGIVHRIDKDTSGLLMVAKNDQAY 161
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFP--EGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ +Q++ +++Y+A V+GV P +GE NA GRS + +
Sbjct: 162 ESLAKQLKEKTSLRKYVALVHGVIPHDKGE--------INAPIGRSKVDR--KMQAVIEG 211
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + ++V + TGRTHQIRVH++Y GYP+A D LY
Sbjct: 212 GKEAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKYIGYPLAGDPLY 260
>gi|422721981|ref|ZP_16778558.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2137]
gi|315027878|gb|EFT39810.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2137]
Length = 310
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM---AWDV--SILQKEPDVLTVCK 156
+K + V+ E V +Y V + +I + EP V+ A D+ +I+ ++ DV+ V K
Sbjct: 44 LKEKHVTVNGETVRANYKVTAGDEI--VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNK 101
Query: 157 PPSVPVHPCGQYRKNTVVGIL--QAEH-----DLAPLFPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L A+H D+ VHR+D+ SGLL++A+N
Sbjct: 102 PQGMVVHPSVGHPNGTLVNALLHHADHLSAINDVVRPGIVHRIDKDTSGLLMVAKNDQAH 161
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFP--EGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ +Q++ +++Y+A V+GV P +GE NA GRS + +
Sbjct: 162 ESLAKQLKEKTSLRKYVALVHGVIPHDKGE--------INAPIGRSKVDR--KMQAVIEG 211
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + ++V + TGRTHQIRVH++Y GYP+A D LY
Sbjct: 212 GKEAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKYIGYPLAGDPLY 260
>gi|322391774|ref|ZP_08065239.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
peroris ATCC 700780]
gi|321145254|gb|EFX40650.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
peroris ATCC 700780]
Length = 297
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ Y+V+ I++ + EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQLKKAKYSVQEGDVITYQVP--EPEVLEYVAEDIPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNIPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G ++++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFRVLERFGDYTLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|306833765|ref|ZP_07466891.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
bovis ATCC 700338]
gi|304424102|gb|EFM27242.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
bovis ATCC 700338]
Length = 298
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ + V Y VK +++ + + E V+ + + I+ ++ DV V K
Sbjct: 31 IKKGTVLVNGKAVKAKYAVKVGDVVTYEVPKEE--VLEYTAENIPLDIIYEDADVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ + VHR+D+ SGLL++A+N +
Sbjct: 89 PQGMVVHPSVGHTSGTLVNALMYHIKDLSSINGVIRPGIVHRIDKDTSGLLMIAKNDTAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ +++ K +++Y+A V+G P V++ A GRS E KGK
Sbjct: 149 NALAAELKDKKSLRKYVAIVHGTIPNDRGVIE------APIGRS--EKDRKKQAVTAKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F + G +++V TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 201 PALTHFKVLERFGNYTLVELTLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|49083776|gb|AAT51141.1| PA2975, partial [synthetic construct]
Length = 319
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 18/251 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ + Y +++ ++ R
Sbjct: 21 AGQRIDNFLIARLKGAPKTLIYRILRKGEVRVNKGRIKPDYRLQAGDQVRVPPLRLAERD 80
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ V KP + VH + Q D +
Sbjct: 81 EPAPLAQGLLERMEAAIVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQLRPDAKDIE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVI-KRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SGLL++A+ S + + K++ KRY A V G +P G++ N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHEALRGEKIVDKRYHALVRGHWPAGKK------NV 194
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
A ++ SG+ + + ++GK A T+F + G ++V PITGRTHQIRVH ++
Sbjct: 195 RAPLLKNNLRSGERMVEVNVEGKDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKH 254
Query: 306 TGYPIANDMLY 316
G+ IA D Y
Sbjct: 255 AGHAIAGDPKY 265
>gi|359414940|ref|ZP_09207405.1| pseudouridine synthase, RluA family [Clostridium sp. DL-VIII]
gi|357173824|gb|EHJ01999.1| pseudouridine synthase, RluA family [Clostridium sp. DL-VIII]
Length = 304
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 117/252 (46%), Gaps = 14/252 (5%)
Query: 72 HVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLH 131
V+N G I + +E G SA RI V+ E+V ++ + S + I L
Sbjct: 7 QVENIEEGTKIREYLKKEL-GLSTRLIRSASIDKRIFVNNEVVKMNRILSSGETIKIDLA 65
Query: 132 RHEPPVMA---WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNT----VVGILQAEHDLA 184
+ E +A D+ I+ ++ D+L V K P + VHP Y+ T V+
Sbjct: 66 KDESQDIAPEKMDIDIVYEDEDILVVNKKPFMVVHPTKSYQSGTLANGVINYFMESGQNC 125
Query: 185 PLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI 244
+ V RLD SGL+I+A+N + +++ KV KRY+A V+G E + +D+ I
Sbjct: 126 IVRLVSRLDMNTSGLIIIAKNQFSHGMLSKEMSDNKVEKRYLAIVHGCMKEKQGTIDLPI 185
Query: 245 NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
D +G+ + T + + S+V C+ TGRTHQIRVHL
Sbjct: 186 YKPEGIENGIKRIIDE------RGQRSITHYKVVEEFSNSSLVECKLETGRTHQIRVHLS 239
Query: 305 YTGYPIANDMLY 316
+ G+PI D+LY
Sbjct: 240 HLGHPIYGDVLY 251
>gi|295425512|ref|ZP_06818204.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
amylolyticus DSM 11664]
gi|295064803|gb|EFG55719.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
amylolyticus DSM 11664]
Length = 302
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 113/227 (49%), Gaps = 28/227 (12%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTVCKP 157
G I V++++ SY VK I + P V DV I+ ++ DV+ V KP
Sbjct: 39 GLILVNQKVEKASYKVKDGDAIEVTV----PAVKPLDVIPENIPLDIIYEDNDVIVVNKP 94
Query: 158 PSVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKAD 210
+ VHP + +T+V +L DLA P VHR+D+ SGLL++A+N+ +
Sbjct: 95 QGMVVHPAAGHPDHTLVNALLYHTKDLASSPEGFRPGIVHRIDKDTSGLLMIAKNSQVRE 154
Query: 211 LFRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+ A K KR Y+A V+G F E E +D I N + G G GK
Sbjct: 155 SLEDQL-AHKTNKRLYLAIVHGNFAEEEGTIDAPIARNP---HDRKKMGVVAG-----GK 205
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F I +S++ C+ TGRTHQIRVHL Y G+P+A D LY
Sbjct: 206 HAVTHFKVIEQFKGYSLIQCKLETGRTHQIRVHLSYIGHPVAGDPLY 252
>gi|257087008|ref|ZP_05581369.1| pseudouridylate synthase [Enterococcus faecalis D6]
gi|256995038|gb|EEU82340.1| pseudouridylate synthase [Enterococcus faecalis D6]
Length = 301
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM---AWDV--SILQKEPDVLTVCK 156
+K + V+ E V +Y V + +I + EP V+ A D+ +I+ ++ DV+ V K
Sbjct: 35 LKEKHVTVNGETVRANYKVTAGDEI--VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNK 92
Query: 157 PPSVPVHPCGQYRKNTVVGIL--QAEH-----DLAPLFPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L A+H D+ VHR+D+ SGLL++A+N
Sbjct: 93 PQGMVVHPSVGHPNGTLVNALLHHADHLSAINDVVRPGIVHRIDKDTSGLLMVAKNDQAH 152
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFP--EGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ +Q++ +++Y+A V+GV P +GE NA GRS + +
Sbjct: 153 ESLAKQLKEKTSLRKYVALVHGVIPHDKGE--------INAPIGRSKVDR--KMQAVIEG 202
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + ++V + TGRTHQIRVH++Y GYP+A D LY
Sbjct: 203 GKEAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKYIGYPLAGDPLY 251
>gi|410726560|ref|ZP_11364797.1| pseudouridine synthase, RluA family [Clostridium sp. Maddingley
MBC34-26]
gi|410600593|gb|EKQ55120.1| pseudouridine synthase, RluA family [Clostridium sp. Maddingley
MBC34-26]
Length = 300
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 13/224 (5%)
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA---WDVSILQKEPDVLTVCK 156
SA RI V+ E+V ++ + + I L + E +A D+ I+ ++ D+L V K
Sbjct: 34 SASLGKRIFVNGEVVKMNRVLNCGEIIKIDLAKDESQDIAPEKMDIDIVYEDEDILVVNK 93
Query: 157 PPSVPVHPCGQYRKNT----VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLF 212
P + VHP Y+ T V+ + + V RLD SGL+I+A+N +
Sbjct: 94 KPFMVVHPTKSYQSGTLANGVINYFMESNQNCIVRLVSRLDMNTSGLIIIAKNQFSHGML 153
Query: 213 RQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAAC 272
+++ KV K+Y+A V+G+ E + +D+ I T D +G+ +
Sbjct: 154 SKEMSENKVGKKYLAIVHGIMKEKQGTIDLPIYKPEGIENGTRRVIDE------RGQRSI 207
Query: 273 TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + S+V C+ TGRTHQIRVHL + G+PI D LY
Sbjct: 208 THFKVVEEFSDSSLVECKLETGRTHQIRVHLSHLGHPIYGDTLY 251
>gi|15598171|ref|NP_251665.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PAO1]
gi|116050977|ref|YP_790198.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa UCBPP-PA14]
gi|218890827|ref|YP_002439691.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa LESB58]
gi|254235949|ref|ZP_04929272.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa C3719]
gi|296388532|ref|ZP_06878007.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PAb1]
gi|386058052|ref|YP_005974574.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa M18]
gi|392983298|ref|YP_006481885.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa DK2]
gi|416860809|ref|ZP_11914412.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa 138244]
gi|416876659|ref|ZP_11919350.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa 152504]
gi|418586458|ref|ZP_13150500.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa MPAO1/P1]
gi|418591013|ref|ZP_13154917.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa MPAO1/P2]
gi|419756446|ref|ZP_14282796.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PADK2_CF510]
gi|420139199|ref|ZP_14647056.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa CIG1]
gi|421153583|ref|ZP_15613124.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa ATCC 14886]
gi|421159715|ref|ZP_15618827.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa ATCC 25324]
gi|421166877|ref|ZP_15625098.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa ATCC 700888]
gi|421173827|ref|ZP_15631564.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa CI27]
gi|421517504|ref|ZP_15964178.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PAO579]
gi|424942342|ref|ZP_18358105.1| ribosomal large subunit pseudouridine synthase c [Pseudomonas
aeruginosa NCMG1179]
gi|451984306|ref|ZP_21932562.1| 23S rRNA pseudouridylate synthase [Pseudomonas aeruginosa 18A]
gi|34395830|sp|Q9HZM9.1|RLUC_PSEAE RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|9949074|gb|AAG06363.1|AE004723_7 ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PAO1]
gi|115586198|gb|ABJ12213.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa UCBPP-PA14]
gi|126167880|gb|EAZ53391.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa C3719]
gi|218771050|emb|CAW26815.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa LESB58]
gi|334837283|gb|EGM16052.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa 138244]
gi|334840497|gb|EGM19149.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa 152504]
gi|346058788|dbj|GAA18671.1| ribosomal large subunit pseudouridine synthase c [Pseudomonas
aeruginosa NCMG1179]
gi|347304358|gb|AEO74472.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa M18]
gi|375043201|gb|EHS35832.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa MPAO1/P1]
gi|375050254|gb|EHS42737.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa MPAO1/P2]
gi|384397177|gb|EIE43590.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PADK2_CF510]
gi|392318803|gb|AFM64183.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa DK2]
gi|403248069|gb|EJY61668.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa CIG1]
gi|404346986|gb|EJZ73335.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PAO579]
gi|404523425|gb|EKA33848.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa ATCC 14886]
gi|404535351|gb|EKA45052.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa CI27]
gi|404536575|gb|EKA46212.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa ATCC 700888]
gi|404546365|gb|EKA55420.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa ATCC 25324]
gi|451758000|emb|CCQ85085.1| 23S rRNA pseudouridylate synthase [Pseudomonas aeruginosa 18A]
gi|453043707|gb|EME91435.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PA21_ST175]
Length = 318
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 18/251 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ + Y +++ ++ R
Sbjct: 21 AGQRIDNFLIARLKGAPKTLIYRILRKGEVRVNKGRIKPDYRLQAGDQVRVPPLRLAERD 80
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ V KP + VH + Q D +
Sbjct: 81 EPAPLAQGLLERMEAAIVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQLRPDAKDIE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVI-KRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SGLL++A+ S + + K++ KRY A V G +P G++ N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHEALRGEKIVDKRYHALVRGHWPAGKK------NV 194
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
A ++ SG+ + + ++GK A T+F + G ++V PITGRTHQIRVH ++
Sbjct: 195 RAPLLKNNLRSGERMVEVNVEGKDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKH 254
Query: 306 TGYPIANDMLY 316
G+ IA D Y
Sbjct: 255 AGHAIAGDPKY 265
>gi|330502588|ref|YP_004379457.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
mendocina NK-01]
gi|328916874|gb|AEB57705.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
mendocina NK-01]
Length = 317
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 128/280 (45%), Gaps = 22/280 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + + KG P ++ G ++V++ + Y +++ + R
Sbjct: 21 AGQRIDNFLRAQLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDVVRVPPLRLAERD 80
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ + KP + VH + Q D L
Sbjct: 81 EPEPLAQGLLERLEAAIVYEDKALIVLNKPAGIAVHGGSGLNYGVIEAFRQLRPDAKDLE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SGLL++A+ S +Q+ V KRY+A V G + ++ V N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHEQLRGDGVDKRYMALVRGHWATAKKQV------N 194
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQYT 306
A +S SG+ + + +GK A T F + G ++V +P+TGRTHQIRVH ++
Sbjct: 195 APLQKSNLRSGERMVEVDGEGKEALTLFRVLRRFGEFATLVEAKPVTGRTHQIRVHAKHA 254
Query: 307 GYPIANDMLYLCEHVTH--REGMSADRAA--AYSHHSPPP 342
G+ IA D Y + T RE + R AY H P P
Sbjct: 255 GHSIAGDSKYGDDGFTREIRE-LGGKRLFLHAYELHVPLP 293
>gi|229019095|ref|ZP_04175930.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1273]
gi|229025339|ref|ZP_04181757.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1272]
gi|423389798|ref|ZP_17367024.1| RluA family pseudouridine synthase [Bacillus cereus BAG1X1-3]
gi|423418199|ref|ZP_17395288.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-1]
gi|228735924|gb|EEL86501.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1272]
gi|228742195|gb|EEL92360.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1273]
gi|401106472|gb|EJQ14433.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-1]
gi|401641889|gb|EJS59606.1| RluA family pseudouridine synthase [Bacillus cereus BAG1X1-3]
Length = 302
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 121/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + K + V+ + V V+Y VK + +I+ +
Sbjct: 10 AEEQKSERIDKFVAEINSEWSRSQVQQWIKDDVVTVNGKSVKVNYKVKGNDEITVTIPDP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A GR E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIGRDKKERQSMTVDE--NGKNAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|227904070|ref|ZP_04021875.1| pseudouridine synthase [Lactobacillus acidophilus ATCC 4796]
gi|227868089|gb|EEJ75510.1| pseudouridine synthase [Lactobacillus acidophilus ATCC 4796]
Length = 305
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 114/225 (50%), Gaps = 28/225 (12%)
Query: 107 IQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTVCKPPS 159
I V+E++ VSY ++ KI + P V D+ I+ ++ DV+ V KP
Sbjct: 44 ILVNEKVEKVSYKIQDGDKIEITV----PAVKPLDIVAENIPLDIVYEDDDVIVVNKPQG 99
Query: 160 VPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADLF 212
+ VHP + +T+V +L DLA P VHR+D+ SGLL++A+NA+ +
Sbjct: 100 MVVHPAPGHPDHTLVNALLYHTQDLAQSPEGFRPGIVHRIDKDTSGLLMIAKNATARESL 159
Query: 213 RQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
QQ+ A K KR Y A V+G F E + +D I N + A + GK A
Sbjct: 160 EQQL-ANKTNKRIYWAIVHGNFSEEQGSIDAPIGRNPYDRKKMAVVEN--------GKKA 210
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + +S++ C+ TGRTHQIRVHL Y G+ +A D LY
Sbjct: 211 ITHFKVLKQFKGYSLIECQLETGRTHQIRVHLDYIGHAVAGDPLY 255
>gi|389573333|ref|ZP_10163408.1| pseudouridylate synthase [Bacillus sp. M 2-6]
gi|388427030|gb|EIL84840.1| pseudouridylate synthase [Bacillus sp. M 2-6]
Length = 304
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 21/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM-----AWDVSILQKEPDVLTVCK 156
VK G I+V+ + V +Y V++ +I + +P + + D+ I ++ DVL V K
Sbjct: 37 VKDGLIEVNGKQVKANYKVQAGDQIK--VEIPDPEALDVEAESMDLDIYYEDEDVLVVNK 94
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPLFPV------HRLDRLVSGLLILARNASKA 209
P + VHP + T+V L A +DL+ + V HR+D+ SGLL++A+N
Sbjct: 95 PRGMVVHPAPGHVTGTLVNGLMAHCNDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDMAH 154
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ Q+ A V ++Y A V+G+ +D A GR + S+ T K
Sbjct: 155 ESLVNQLVAKTVTRKYTAVVHGIIQHDTGTID------APIGRDKKDR-QSMTVTKENAK 207
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F + ++V C TGRTHQIRVH++Y GYP+A D Y
Sbjct: 208 QAVTHFDVMERFKDFTVVECRLETGRTHQIRVHMKYIGYPLAGDPKY 254
>gi|107102524|ref|ZP_01366442.1| hypothetical protein PaerPA_01003588 [Pseudomonas aeruginosa PACS2]
Length = 318
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 18/251 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ + Y +++ ++ R
Sbjct: 21 AGQRIDNFLIARLKGAPKTLIYRILRKGEVRVNKGRIKPDYRLQAGDQVRVPPLRLAERD 80
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ V KP + VH + Q D +
Sbjct: 81 EPAPLAQGLLERMEAAIVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQLRPDAKDIE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVI-KRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SGLL++A+ S + + K++ KRY A V G +P G++ N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHEALRGEKIVDKRYHALVRGHWPAGKK------NV 194
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
A ++ SG+ + + ++GK A T+F + G ++V PITGRTHQIRVH ++
Sbjct: 195 RAPLLKNNLRSGERMVEVNVEGKDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKH 254
Query: 306 TGYPIANDMLY 316
G+ IA D Y
Sbjct: 255 AGHAIAGDPKY 265
>gi|58337436|ref|YP_194021.1| pseudouridine synthase [Lactobacillus acidophilus NCFM]
gi|58254753|gb|AAV42990.1| pseudouridine synthase [Lactobacillus acidophilus NCFM]
Length = 302
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 114/225 (50%), Gaps = 28/225 (12%)
Query: 107 IQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTVCKPPS 159
I V+E++ VSY ++ KI + P V D+ I+ ++ DV+ V KP
Sbjct: 41 ILVNEKVEKVSYKIQDGDKIEITV----PAVKPLDIVAENIPLDIVYEDDDVIVVNKPQG 96
Query: 160 VPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADLF 212
+ VHP + +T+V +L DLA P VHR+D+ SGLL++A+NA+ +
Sbjct: 97 MVVHPAPGHPDHTLVNALLYHTQDLAQSPEGFRPGIVHRIDKDTSGLLMIAKNATARESL 156
Query: 213 RQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
QQ+ A K KR Y A V+G F E + +D I N + A + GK A
Sbjct: 157 EQQL-ANKTNKRIYWAIVHGNFSEEQGSIDAPIGRNPYDRKKMAVVEN--------GKKA 207
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + +S++ C+ TGRTHQIRVHL Y G+ +A D LY
Sbjct: 208 ITHFKVLKQFKGYSLIECQLETGRTHQIRVHLDYIGHAVAGDPLY 252
>gi|397657322|ref|YP_006498024.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca E718]
gi|402842908|ref|ZP_10891311.1| rRNA pseudouridylate synthase C [Klebsiella sp. OBRC7]
gi|423102489|ref|ZP_17090191.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5242]
gi|376387965|gb|EHT00666.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5242]
gi|394345788|gb|AFN31909.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca E718]
gi|402278294|gb|EJU27358.1| rRNA pseudouridylate synthase C [Klebsiella sp. OBRC7]
Length = 331
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 117/251 (46%), Gaps = 19/251 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ V Y V+ S+K
Sbjct: 32 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEAGDEVRIPPVRVSEKE 91
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 92 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 151
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 152 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQAPLLK 211
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
N +SG+ + +GK + T+F ++ TH ++V C P+TGRTHQIRVH QY
Sbjct: 212 N------ILQSGERIVRVNQEGKPSETRF-KVEERYTHATLVRCSPVTGRTHQIRVHTQY 264
Query: 306 TGYPIANDMLY 316
G+PIA D Y
Sbjct: 265 AGHPIAFDDRY 275
>gi|336064535|ref|YP_004559394.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pasteurianus ATCC 43144]
gi|334282735|dbj|BAK30308.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pasteurianus ATCC 43144]
Length = 298
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ + V Y VK +++ + + E V+ + + I+ ++ DV V K
Sbjct: 31 IKKGTVLVNGKAVKAKYAVKVGDVVTYEVPKEE--VLEYTAENIPLDIIYEDDDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ + VHR+D+ SGLL++A+N +
Sbjct: 89 PQGMVVHPSVGHTSGTLVNALMYHIKDLSSINGVIRPGIVHRIDKDTSGLLMIAKNDTAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ +++ K +++Y+A V+G P V++ A GRS E KGK
Sbjct: 149 NALAAELKDKKSLRKYVAIVHGTIPNDRGVIE------APIGRS--EKDRKKQAVTAKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F + G +++V TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 201 PALTHFKVLERFGNYTLVELTLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|22537512|ref|NP_688363.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
agalactiae 2603V/R]
gi|76797703|ref|ZP_00779971.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae 18RS21]
gi|77414617|ref|ZP_00790757.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae 515]
gi|22534392|gb|AAN00236.1|AE014254_16 ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae 2603V/R]
gi|76586927|gb|EAO63417.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae 18RS21]
gi|77159330|gb|EAO70501.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae 515]
Length = 296
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ ++ YTV+ +I+ + + E V+ + + I+ ++ DV V K
Sbjct: 31 IKKGIVLVNGQVKKAKYTVQEGDRITFDIPKEE--VLDYQAENIPLDIIYQDDDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHSSGTLVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKNDRAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ ++++ K +++Y+A V+G P V++ A GRS + KGK
Sbjct: 149 QVLAEELKDKKSLRKYLAIVHGNLPNDRGVIE------APIGRSDKDRKKQA--VTAKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAITRFHVLERFGDYTLVELSLETGRTHQIRVHMAYIGHPLAGDPVY 247
>gi|419953561|ref|ZP_14469705.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri TS44]
gi|387969621|gb|EIK53902.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri TS44]
Length = 317
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 118/256 (46%), Gaps = 17/256 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + + +G P ++ G ++V++ V Y +++ + R
Sbjct: 21 AGQRIDNFLRTQLRGVPKTLIYRILRKGEVRVNKGRVKPEYKLQAGDLVRVPPLRLAERD 80
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ + KP + VH + + Q D L
Sbjct: 81 EPEPLAQGLLERLEAAIVYEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQLRPDAKELE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SGLL++A+ S Q + V KRY+A V G + ++ V N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHQALRGDGVDKRYMALVRGRWETSKKQV------N 194
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQYT 306
A ++T SG+ + + GK A T F + G ++V P+TGRTHQIRVH ++
Sbjct: 195 APLLKNTLRSGERMVEVTEDGKEALTLFRVLRRFGDFATLVEARPVTGRTHQIRVHARHA 254
Query: 307 GYPIANDMLYLCEHVT 322
G+ IA D Y E T
Sbjct: 255 GHSIAGDSKYGDEEFT 270
>gi|309805623|ref|ZP_07699665.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
09V1-c]
gi|308165061|gb|EFO67302.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
09V1-c]
Length = 311
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 20/226 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA---WDVSILQKEPDVLTVCKPP 158
+K I + +SY V ++ KI+ + +P + ++ I+ ++ DV+ V KP
Sbjct: 40 IKQKLITTNGLQTKLSYKVNTNDKINIEIPSPQPLSLDPENLNLDIIYEDDDVIVVNKPQ 99
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + +T+V G++ +LA L P VHR+D+ SGLL++A+NA+
Sbjct: 100 GMVVHPSAGHPDHTLVNGLIYHTKNLAKCDEILRPGIVHRIDKDTSGLLMIAKNATARIS 159
Query: 212 FRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKA 270
+Q+ A K+ KR YIA V+ F V+D I N + A GK
Sbjct: 160 LEKQL-ANKINKREYIAIVHANFKHSSGVIDAPIGRNPYQRQQMAVVAS--------GKK 210
Query: 271 ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T FT + +S+V C TGRTHQIRVH+ Y G+PIA D LY
Sbjct: 211 AITHFTVLEQFPGYSLVKCVLETGRTHQIRVHMSYIGHPIAGDPLY 256
>gi|430814502|emb|CCJ28274.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 239
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 91/197 (46%), Gaps = 64/197 (32%)
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+K I H HRHEPPV ++ I+ ++ D++ + KP +PVHP G+YR N++ I+ A
Sbjct: 13 IKDGDVIEHLSHRHEPPVTHKNIDIIYQDDDIVVINKPSGIPVHPAGRYRHNSITHIMMA 72
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
E +RLDRL SGL+ILARN AD R+++ +++K YI +V+G
Sbjct: 73 E------MACNRLDRLTSGLMILARNVRIADEMRKKMYDRRILKEYICKVHG-------- 118
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
PL G RTHQ+
Sbjct: 119 ------------------------QPLTG--------------------------RTHQL 128
Query: 300 RVHLQYTGYPIANDMLY 316
RVHLQ+ G PI ND +Y
Sbjct: 129 RVHLQWLGNPILNDPIY 145
>gi|410594777|ref|YP_006951504.1| RNA pseudouridine synthase ylyB [Streptococcus agalactiae SA20-06]
gi|410518416|gb|AFV72560.1| RNA pseudouridine synthase ylyB [Streptococcus agalactiae SA20-06]
Length = 296
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ ++ YTV+ +I+ + + E V+ + + I+ ++ DV V K
Sbjct: 31 IKKGIVLVNGQVKKAKYTVQEGDRITFDIPKEE--VLDYQAENIPLDIIYQDDDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHSSGTLVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKNDRAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ ++++ K +++Y+A V+G P V++ A GRS + KGK
Sbjct: 149 QVLAEELKDKKSLRKYLAIVHGNLPNDRGVIE------APIGRSDKDRKKQA--VTAKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAITRFHVLERFGDYTLVELSLETGRTHQIRVHMAYIGHPLAGDPVY 247
>gi|313665289|ref|YP_004047160.1| RluA family pseudouridine synthase [Mycoplasma leachii PG50]
gi|392388723|ref|YP_005907132.1| pseudouridine synthase [Mycoplasma leachii 99/014/6]
gi|312949430|gb|ADR24026.1| pseudouridine synthase, RluA family [Mycoplasma leachii PG50]
gi|339276368|emb|CBV66947.1| Pseudouridine synthase [Mycoplasma leachii 99/014/6]
Length = 310
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 126/256 (49%), Gaps = 26/256 (10%)
Query: 80 KTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA 139
K +V+L R Y + KC + D+ ++ ++ VK + +I + + P++
Sbjct: 17 KLLVELLTSYDYSRSYIQKLIKEKCISVN-DQIIINNNFLVKPNSEIVITI---KDPILD 72
Query: 140 --------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAP----L 186
D+ I+ ++ D+L + K ++ VHP NT+V +L ++ +L+ L
Sbjct: 73 TNLVKNKDIDLDIIYQDDDLLVINKQNNITVHPSLNNTNNTIVNALLASDVELSSINGEL 132
Query: 187 FP--VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI 244
P VHR+D+ +GLLI+A+N L + ++ ++ K Y+A V GV + ++D
Sbjct: 133 RPGIVHRIDKQTTGLLIIAKNDKTHKLLSEMFKSHRIYKEYLAIVTGVIKPNKGLID--- 189
Query: 245 NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
A GRS + + T K A T F + +++V C+ TGRTHQIRVH
Sbjct: 190 ---APIGRSQTDRK-KMSVTAKNSKQAITTFELVERFLKNTLVKCQIQTGRTHQIRVHFN 245
Query: 305 YTGYPIANDMLYLCEH 320
Y +P+ ND +Y +H
Sbjct: 246 YINHPVLNDPVYGKKH 261
>gi|76787790|ref|YP_330006.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae A909]
gi|77408235|ref|ZP_00784979.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae COH1]
gi|77412105|ref|ZP_00788430.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae CJB111]
gi|406709758|ref|YP_006764484.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae GD201008-001]
gi|421148189|ref|ZP_15607855.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae GB00112]
gi|421531897|ref|ZP_15978273.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae STIR-CD-17]
gi|424049180|ref|ZP_17786731.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae ZQ0910]
gi|76562847|gb|ABA45431.1| ribosomal large subunit pseudouridine synthase, RluA family
[Streptococcus agalactiae A909]
gi|77161861|gb|EAO72847.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae CJB111]
gi|77173176|gb|EAO76301.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae COH1]
gi|389649380|gb|EIM70862.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae ZQ0910]
gi|401685165|gb|EJS81179.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae GB00112]
gi|403642920|gb|EJZ03723.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae STIR-CD-17]
gi|406650643|gb|AFS46044.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae GD201008-001]
Length = 296
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ ++ YTV+ +I+ + + E V+ + + I+ ++ DV V K
Sbjct: 31 IKKGIVLVNGQVKKAKYTVQEGDRITFDIPKEE--VLDYQAENIPLDIIYQDDDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHSSGTLVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKNDRAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ ++++ K +++Y+A V+G P V++ A GRS + KGK
Sbjct: 149 QVLAEELKDKKSLRKYLAIVHGNLPNDRGVIE------APIGRSDKDRKKQA--VTAKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAITRFHVLERFGDYTLVELSLETGRTHQIRVHMAYIGHPLAGDPVY 247
>gi|82702194|ref|YP_411760.1| pseudouridine synthase RluD [Nitrosospira multiformis ATCC 25196]
gi|82410259|gb|ABB74368.1| ribosomal large subunit pseudouridine synthase C [Nitrosospira
multiformis ATCC 25196]
Length = 328
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 119/255 (46%), Gaps = 24/255 (9%)
Query: 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM 138
G+ I + + K P + ++ G+++++ + P Y ++S + PPV
Sbjct: 11 GQRIDNFLIKRLKNVPKSHVYRLLRSGQVRINSKRAPPDYHLQSGDIV------RIPPVR 64
Query: 139 AWDVS----------------ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH- 181
+ S +L ++ ++ V KPP V VH G V+ L+A+H
Sbjct: 65 TVEKSALPPKKLSKPGFIAFQVLFEDDALIAVNKPPGVAVH-GGSGISFGVIEQLRAQHP 123
Query: 182 DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
D L HRLDR SG+L+LA+N + +Q+ G+V K Y+ V G + G Q V
Sbjct: 124 DWRFLELAHRLDRETSGVLLLAKNRAALVELHRQLRMGEVEKHYLTLVKGRWRNGRQSVR 183
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
+++ + G + + D G +A T F + + S++ E TGRTHQIRV
Sbjct: 184 LSLRKYLTPGGERRVAVEKDADEKKGGMSAHTVFILRESWQSFSLLEAELKTGRTHQIRV 243
Query: 302 HLQYTGYPIANDMLY 316
HL Y G+PIA D Y
Sbjct: 244 HLAYLGFPIAGDDKY 258
>gi|256822394|ref|YP_003146357.1| RluA family pseudouridine synthase [Kangiella koreensis DSM 16069]
gi|256795933|gb|ACV26589.1| pseudouridine synthase, RluA family [Kangiella koreensis DSM 16069]
Length = 316
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 123/272 (45%), Gaps = 33/272 (12%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
AG+ I + ++ KG P + ++ G ++V++ + Y +K + PPV
Sbjct: 19 AGQRIDNFLLKKLKGVPKSHIYKMLRKGEVRVNKGRIKAEYKIKEGDSV------RLPPV 72
Query: 138 ----------------MAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH 181
+ +IL ++ ++ + KP + VH G V+ L+A
Sbjct: 73 KTTNTATEVPVKLNIVQELESAILYEDKRLIVLNKPHGMAVH-GGSGMSFGVIEALRALR 131
Query: 182 DLAPLFP-VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVV 240
AP VHRLDR SG L++A+ S +Q++ + K+Y A V G +P + +
Sbjct: 132 PEAPFLELVHRLDRDTSGCLLIAKKRSTLRFLHEQLQKKLMSKQYWALVEGKWPAKLKHI 191
Query: 241 DVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIR 300
D + N +SG+ + GK + T F + S+V EP+TGRTHQIR
Sbjct: 192 DFPLAKNH------LKSGERVVRVTENGKPSLTSFNVVEVFKNFSLVSAEPVTGRTHQIR 245
Query: 301 VHLQYTGYPIANDMLYLCEHVTH---REGMSA 329
VH Q G+P+ D Y + VT R+G+S
Sbjct: 246 VHAQQAGHPLVGDPKYGNDDVTEQFKRQGLSG 277
>gi|229098363|ref|ZP_04229309.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-29]
gi|423441376|ref|ZP_17418282.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X2-1]
gi|423464450|ref|ZP_17441218.1| RluA family pseudouridine synthase [Bacillus cereus BAG6O-1]
gi|423533792|ref|ZP_17510210.1| RluA family pseudouridine synthase [Bacillus cereus HuB2-9]
gi|423540952|ref|ZP_17517343.1| RluA family pseudouridine synthase [Bacillus cereus HuB4-10]
gi|228685068|gb|EEL39000.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-29]
gi|401172140|gb|EJQ79361.1| RluA family pseudouridine synthase [Bacillus cereus HuB4-10]
gi|402418037|gb|EJV50337.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X2-1]
gi|402420717|gb|EJV52988.1| RluA family pseudouridine synthase [Bacillus cereus BAG6O-1]
gi|402464011|gb|EJV95711.1| RluA family pseudouridine synthase [Bacillus cereus HuB2-9]
Length = 302
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 121/253 (47%), Gaps = 31/253 (12%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFL-HR 132
AEE K D +V+ + K + V+ + V V+Y VK + +I+ +
Sbjct: 10 AEEQKSERIDKFVAEINSEWSRSQVQQWIKDDVVTVNGKSVKVNYKVKENDEITVTIPDP 69
Query: 133 HEPPVMAWDVS--ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL--- 186
E + A D++ I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGINGV 129
Query: 187 ---FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVN 243
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 130 MRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID-- 187
Query: 244 INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHL 303
A R E D GK A T F + ++V C TGRTHQIRVH+
Sbjct: 188 ----APIARDKKERQSMTVDE--NGKHAVTHFQVLDRFKDFTLVECRLETGRTHQIRVHM 241
Query: 304 QYTGYPIANDMLY 316
+Y GYP+A D Y
Sbjct: 242 KYIGYPLAGDPKY 254
>gi|423483483|ref|ZP_17460173.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-2]
gi|401141034|gb|EJQ48589.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-2]
Length = 302
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 94/183 (51%), Gaps = 15/183 (8%)
Query: 141 DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLD 193
++ + ++ DVL V KP + VHP + K T+V G++ DL+ + VHR+D
Sbjct: 80 NLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCTDLSGINGVMRPGIVHRID 139
Query: 194 RLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRS 253
+ SGLL++A+N + Q+ A V +RY A V+GV P + +D A GR
Sbjct: 140 KDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID------APIGRD 193
Query: 254 TAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
E D GK A T F + ++V C TGRTHQIRVH++Y GYP+A D
Sbjct: 194 KKERQSMTVDE--NGKNAVTHFQVLERFKNFTLVECRLETGRTHQIRVHMKYIGYPLAGD 251
Query: 314 MLY 316
Y
Sbjct: 252 PKY 254
>gi|423612107|ref|ZP_17587968.1| RluA family pseudouridine synthase [Bacillus cereus VD107]
gi|401247114|gb|EJR53458.1| RluA family pseudouridine synthase [Bacillus cereus VD107]
Length = 302
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 120/253 (47%), Gaps = 31/253 (12%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFL-HR 132
AEE K D +V+ + K + V+ + V +Y VK + +I+ +
Sbjct: 10 AEEQKSERIDKFVAGINSEWSRSQVQQWIKDAVVTVNGKAVKGNYKVKENDEITVTIPEP 69
Query: 133 HEPPVMAWDVS--ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL--- 186
E + D+S I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQPEDMSLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGINGV 129
Query: 187 ---FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVN 243
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 130 MRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID-- 187
Query: 244 INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHL 303
A GR E D GK A T F + ++V C TGRTHQIRVH+
Sbjct: 188 ----APIGRDKKERQSMTVDE--NGKNAVTHFQVLERFKDFTLVECRLETGRTHQIRVHM 241
Query: 304 QYTGYPIANDMLY 316
+Y GYP+A D Y
Sbjct: 242 KYIGYPLAGDPKY 254
>gi|229104455|ref|ZP_04235123.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-28]
gi|229117388|ref|ZP_04246765.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock1-3]
gi|407706351|ref|YP_006829936.1| formamidase [Bacillus thuringiensis MC28]
gi|423378255|ref|ZP_17355539.1| RluA family pseudouridine synthase [Bacillus cereus BAG1O-2]
gi|423448398|ref|ZP_17425277.1| RluA family pseudouridine synthase [Bacillus cereus BAG5O-1]
gi|423547190|ref|ZP_17523548.1| RluA family pseudouridine synthase [Bacillus cereus HuB5-5]
gi|423615844|ref|ZP_17591678.1| RluA family pseudouridine synthase [Bacillus cereus VD115]
gi|423623028|ref|ZP_17598806.1| RluA family pseudouridine synthase [Bacillus cereus VD148]
gi|228666088|gb|EEL21553.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock1-3]
gi|228678977|gb|EEL33186.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-28]
gi|401128992|gb|EJQ36675.1| RluA family pseudouridine synthase [Bacillus cereus BAG5O-1]
gi|401178911|gb|EJQ86084.1| RluA family pseudouridine synthase [Bacillus cereus HuB5-5]
gi|401259801|gb|EJR65975.1| RluA family pseudouridine synthase [Bacillus cereus VD148]
gi|401260381|gb|EJR66554.1| RluA family pseudouridine synthase [Bacillus cereus VD115]
gi|401636521|gb|EJS54275.1| RluA family pseudouridine synthase [Bacillus cereus BAG1O-2]
gi|407384036|gb|AFU14537.1| putative RNA pseudouridine synthase ylyB [Bacillus thuringiensis
MC28]
Length = 302
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 121/253 (47%), Gaps = 31/253 (12%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFL-HR 132
AEE K D +V+ + K + V+ + V V+Y VK + +I+ +
Sbjct: 10 AEEQKSERIDKFVAEINSEWSRSQVQQWIKDDVVTVNGKSVKVNYKVKENDEITVTIPDP 69
Query: 133 HEPPVMAWDVS--ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL--- 186
E + A D++ I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGINGV 129
Query: 187 ---FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVN 243
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 130 MRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID-- 187
Query: 244 INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHL 303
A R E D GK A T F + ++V C TGRTHQIRVH+
Sbjct: 188 ----APIARDKKERQSMTVDE--NGKHAVTHFQVLERFKDFTLVECRLETGRTHQIRVHM 241
Query: 304 QYTGYPIANDMLY 316
+Y GYP+A D Y
Sbjct: 242 KYIGYPLAGDPKY 254
>gi|229162828|ref|ZP_04290785.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
R309803]
gi|228620710|gb|EEK77579.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
R309803]
Length = 302
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 122/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + K + V+ ++V +Y VK++ +I+ +
Sbjct: 10 AEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKVVKGNYKVKANDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A GR E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIGRDKKERQSMTVDE--NGKNAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|358054986|ref|ZP_09147514.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
simiae CCM 7213]
gi|357256720|gb|EHJ07052.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
simiae CCM 7213]
Length = 305
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 110/225 (48%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRH-EPPVMA--WDVSILQKEPDVLTVCKPP 158
+K G + V+++ + +Y K + KI E ++A D+ I ++ DV V KP
Sbjct: 38 IKLGLVSVNDKTIKPNYKTKLNDKIVVTEKETVEADIVAENLDLDIYYEDNDVAVVYKPK 97
Query: 159 SVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP G Y V G++ DL+ + VHR+D SGLL++A+N
Sbjct: 98 GMVVHPSPGHYTNTLVNGLMYQIKDLSGINGEIRPGIVHRIDMDTSGLLMVAKNDIAHRG 157
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q+ V ++Y A ++GV P +D I N + +S A D GK A
Sbjct: 158 LVEQLMDKTVKRKYTALIHGVIPHDYGTIDAPIGRNKNDRQSMAVVDD--------GKEA 209
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + +++V C+ TGRTHQIRVH++Y G+P+ D Y
Sbjct: 210 ITHFNVLERFKDYTLVECQLETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|423452804|ref|ZP_17429657.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X1-1]
gi|423511927|ref|ZP_17488458.1| RluA family pseudouridine synthase [Bacillus cereus HuA2-1]
gi|401139363|gb|EJQ46925.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X1-1]
gi|402450188|gb|EJV82022.1| RluA family pseudouridine synthase [Bacillus cereus HuA2-1]
Length = 302
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 121/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + K + V+ + V +Y VK + +I+ +
Sbjct: 10 AEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSVKGNYKVKGNDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ + ++ DVL V KP + VHP + K T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A GR E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIGRDKKERQSMTVDE--NGKNAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|419475322|ref|ZP_14015163.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA14688]
gi|379561660|gb|EHZ26677.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA14688]
Length = 295
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ +TV+ +++ H EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKHTVQEGDVVTY--HVPEPEVLEYVAEDLPLEIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y G+ +A D +Y
Sbjct: 201 PAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHSVAGDEVY 247
>gi|229075650|ref|ZP_04208632.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock4-18]
gi|228707426|gb|EEL59617.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock4-18]
Length = 302
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 121/253 (47%), Gaps = 31/253 (12%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFL-HR 132
AEE K D +V+ + K + V+ + V V+Y VK + +I+ +
Sbjct: 10 AEEQKSERIDKFVAEINSEWSRSQVQQWIKDDVVTVNGKSVKVNYKVKENDEITVTIPDP 69
Query: 133 HEPPVMAWDVS--ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL--- 186
E + A D++ I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGINGV 129
Query: 187 ---FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVN 243
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 130 MRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID-- 187
Query: 244 INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHL 303
A R E D GK A T F + ++V C TGRTHQIRVH+
Sbjct: 188 ----APIARDKKERQSMTVDE--NGKHAVTHFQVLERFKDFTLVECRLETGRTHQIRVHM 241
Query: 304 QYTGYPIANDMLY 316
+Y GYP+A D Y
Sbjct: 242 KYIGYPLAGDPKY 254
>gi|385260600|ref|ZP_10038744.1| pseudouridine synthase, RluA family [Streptococcus sp. SK140]
gi|385191150|gb|EIF38574.1| pseudouridine synthase, RluA family [Streptococcus sp. SK140]
Length = 296
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G++ V+ ++ YTV+ +++ + EP V+ + + I+ ++ DV V K
Sbjct: 31 IKSGQVLVNGQVKKAKYTVQEGDIVTYQVP--EPEVLEYVAEDIPLEIIYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q+++ K +++Y V+G P V++ I + + A + KGK
Sbjct: 149 LALAQELKDKKSLRKYWTIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G ++++ + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFQVLERFGDYTLLELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|420177412|ref|ZP_14683748.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM057]
gi|420179254|ref|ZP_14685549.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM053]
gi|394247796|gb|EJD93038.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM057]
gi|394254060|gb|EJD99042.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM053]
Length = 305
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G ++V+ +++ +Y VK + KI E V+ D+ I ++ DV V
Sbjct: 38 IKEGLVKVNGKVIKSNYKVKLNDKIV----VTEKEVVEADIKPENLNLDIYYEDEDVAIV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ DL+ + VHR+D+ SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYSGTLVNGLMYQIKDLSGINGEIRPGIVHRIDKDTSGLLMVAKNDV 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ + V ++Y A V+G P +D I N + ++ A D
Sbjct: 154 AHRHLVEQLMSKTVKRKYTALVHGNIPHDYGTIDAPIGRNKNDRQAMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + ++++ C+ TGRTHQIRVH++Y GYP+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLIECQLETGRTHQIRVHMKYIGYPLVGDPKY 254
>gi|418329190|ref|ZP_12940269.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
14.1.R1.SE]
gi|365230852|gb|EHM71927.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
14.1.R1.SE]
Length = 305
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G ++V+ +++ +Y VK + KI E V+ D+ I ++ DV V
Sbjct: 38 IKEGLVKVNGKVIKSNYKVKLNDKIV----VTEKEVVEADIKPENLNLDIYYEDEDVAIV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ DL+ + VHR+D+ SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYSGTLVNGLMYQIKDLSGINGEIRPGIVHRIDKDTSGLLMVAKNDV 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ + V ++Y A V+G P +D I N + ++ A D
Sbjct: 154 AHRHLVEQLMSKTVKRKYTALVHGNIPHDYGTIDAPIGRNKNDRQAMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + ++++ C+ TGRTHQIRVH++Y GYP+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLIECQLETGRTHQIRVHMKYIGYPLVGDPKY 254
>gi|399910323|ref|ZP_10778637.1| ribosomal large subunit pseudouridine synthase C [Halomonas sp.
KM-1]
Length = 315
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 112/249 (44%), Gaps = 16/249 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
+G+ + + KG P V+ G ++V+++ V Y ++ + + P
Sbjct: 17 SGQRVDNFLITRLKGVPRTLVYRIVRKGEVRVNKKRVKADYRLQPGDVVRIPPLKLAPRE 76
Query: 138 MAWDVS----------ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
VS +L + P L + KP +PVH + + + Q DL L
Sbjct: 77 AVKQVSEGLRNLLAGSVLVEGPGWLVLNKPAGLPVHGGSGVKIGLIEALRQVREDLDFLE 136
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SG L+LA++ + ++ K+ KRY+A V G +P + V ++
Sbjct: 137 LVHRLDRDTSGCLLLAKSRPALLALNEALKGHKMDKRYLALVAGRWPARREFVSARLD-- 194
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTG 307
R A +G+ GK A T+F T +++ EP+TGRTHQIRVH + G
Sbjct: 195 ----RYDAGNGERRVRVDAAGKVARTRFAVRETFPKATLIEAEPVTGRTHQIRVHAAHAG 250
Query: 308 YPIANDMLY 316
+P+ D Y
Sbjct: 251 FPLLGDDKY 259
>gi|57866712|ref|YP_188346.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
epidermidis RP62A]
gi|242242479|ref|ZP_04796924.1| pseudouridylate synthase RluD [Staphylococcus epidermidis W23144]
gi|416124399|ref|ZP_11595395.1| pseudouridine synthase, RluA family protein [Staphylococcus
epidermidis FRI909]
gi|418612942|ref|ZP_13175963.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU117]
gi|418613966|ref|ZP_13176956.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU118]
gi|418626859|ref|ZP_13189455.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU126]
gi|418631968|ref|ZP_13194412.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU128]
gi|418634020|ref|ZP_13196418.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU129]
gi|420175034|ref|ZP_14681479.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM061]
gi|420189630|ref|ZP_14695598.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM037]
gi|420198983|ref|ZP_14704667.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM031]
gi|420204119|ref|ZP_14709679.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM015]
gi|57637370|gb|AAW54158.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Staphylococcus epidermidis RP62A]
gi|242234053|gb|EES36365.1| pseudouridylate synthase RluD [Staphylococcus epidermidis W23144]
gi|319401509|gb|EFV89719.1| pseudouridine synthase, RluA family protein [Staphylococcus
epidermidis FRI909]
gi|374817252|gb|EHR81437.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU117]
gi|374821835|gb|EHR85876.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU118]
gi|374831403|gb|EHR95145.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU126]
gi|374833637|gb|EHR97312.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU128]
gi|374838012|gb|EHS01569.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU129]
gi|394244320|gb|EJD89665.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM061]
gi|394260965|gb|EJE05767.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM037]
gi|394272669|gb|EJE17119.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM031]
gi|394274133|gb|EJE18558.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
NIHLM015]
Length = 305
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G ++V+ +++ +Y VK + KI E V+ D+ I ++ DV V
Sbjct: 38 IKEGLVKVNGKVIKSNYKVKLNDKIV----VTEKEVVEADIKPENLNLDIYYEDEDVAIV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ DL+ + VHR+D+ SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYSGTLVNGLMYQIKDLSGINGEIRPGIVHRIDKDTSGLLMVAKNDV 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ + V ++Y A V+G P +D I N + ++ A D
Sbjct: 154 AHRHLVEQLMSKTVKRKYTALVHGNIPHDYGTIDAPIGRNKNDRQAMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + ++++ C+ TGRTHQIRVH++Y GYP+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLIECQLETGRTHQIRVHMKYIGYPLVGDPKY 254
>gi|218442079|ref|YP_002380408.1| pseudouridine synthase [Cyanothece sp. PCC 7424]
gi|218174807|gb|ACK73540.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7424]
Length = 308
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 6/239 (2%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
AG T++D +++++ + + G++ +D + + QK+++ E P
Sbjct: 21 AGLTVLDYYSQKYPHSTPCQWFERITSGQVLLDGHSCNPHTRLITGQKLAYHRPPWEEPS 80
Query: 138 MAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVS 197
+ +L + DVL V KP +P+ P G + ++T++G L+ + FP+HRL R S
Sbjct: 81 APLNFDLLYSDSDVLVVAKPAGLPILPGGGFVEHTLLGQLKQHYPEDTPFPIHRLGRGTS 140
Query: 198 GLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAES 257
GL++LAR++ +Q+ + ++ K Y A + P+ + IN
Sbjct: 141 GLVLLARSSFARGFLSEQMRSRQISKIYRA----LIPKSDLTDHFTIN-QPIGKIPHPVL 195
Query: 258 GDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
G G TP GK A ++ + ++V + +TGR HQIR+HL GYP+ D LY
Sbjct: 196 GYIFGATP-NGKDALSECRVLKRTSETTLVEVKILTGRPHQIRIHLAAIGYPLIGDPLY 253
>gi|420192780|ref|ZP_14698637.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
epidermidis NIHLM023]
gi|394260596|gb|EJE05405.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
epidermidis NIHLM023]
Length = 259
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 127/268 (47%), Gaps = 33/268 (12%)
Query: 65 YYFEFI--SHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKS 122
Y F I S V R K + DL + + + D+ +K G ++V+ +++ +Y VK
Sbjct: 4 YNFNIIEQSQVGQR-IDKLVSDLNKDWSRSQLQDW----IKEGLVKVNGKVIKSNYKVKL 58
Query: 123 SQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTVCKPPSVPVHPC-GQYRKNTVV 174
+ KI E V+ D+ I ++ DV V KP + VHP G Y V
Sbjct: 59 NDKIV----VTEKEVVEADIKPENLNLDIYYEDEDVAIVYKPKGMVVHPSPGHYSGTLVN 114
Query: 175 GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIAR 228
G++ DL+ + VHR+D+ SGLL++A+N +Q+ + V ++Y A
Sbjct: 115 GLMYQIKDLSGINGEIRPGIVHRIDKDTSGLLMVAKNDVAHRHLVEQLMSKTVKRKYTAL 174
Query: 229 VNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
V+G P +D I N + ++ A D GK A T F + ++++
Sbjct: 175 VHGNIPHDYGTIDAPIGRNKNDRQAMAVVDD--------GKEAVTHFNVLEHFKDYTLIE 226
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C+ TGRTHQIRVH++Y GYP+ D Y
Sbjct: 227 CQLETGRTHQIRVHMKYIGYPLVGDPKY 254
>gi|421724187|ref|ZP_16163421.1| 23S rRNA pseudouridylate synthase C [Klebsiella oxytoca M5al]
gi|410374996|gb|EKP29643.1| 23S rRNA pseudouridylate synthase C [Klebsiella oxytoca M5al]
Length = 317
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 117/251 (46%), Gaps = 19/251 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ V Y V+ S+K
Sbjct: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEAGDEVRIPPVRVSEKE 77
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 137
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 138 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQAPLLK 197
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
N +SG+ + +GK + T+F ++ TH ++V C P+TGRTHQIRVH QY
Sbjct: 198 N------ILQSGERIVRVNQEGKPSETRF-KVEERFTHATLVRCSPVTGRTHQIRVHTQY 250
Query: 306 TGYPIANDMLY 316
G+PIA D Y
Sbjct: 251 AGHPIAFDDRY 261
>gi|395242328|ref|ZP_10419325.1| Pseudouridine synthase [Lactobacillus pasteurii CRBIP 24.76]
gi|394480060|emb|CCI85565.1| Pseudouridine synthase [Lactobacillus pasteurii CRBIP 24.76]
Length = 301
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 20/221 (9%)
Query: 107 IQVDEEMVPVSYTVKSSQKISHFLHRHEPP-VMAWDV--SILQKEPDVLTVCKPPSVPVH 163
I V+++ SY V++ KI + EP V A D+ I+ ++ DV+ V KP + VH
Sbjct: 41 ILVNDKKEKASYKVQAGDKIVVNVPALEPLNVEAEDIPLDIVYEDQDVIVVNKPQGMVVH 100
Query: 164 PCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADLFRQQI 216
P + T+V +L DLA P VHR+D+ SGLL++A+N + Q+
Sbjct: 101 PSAGHPNYTLVNALLYHTKDLAASPEGFRPGIVHRIDKDTSGLLMIAKNPKARESLEDQL 160
Query: 217 EAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKF 275
A K+ KR Y+A V+G F E +D I N S + A + GK+A T F
Sbjct: 161 -AHKLNKRLYLAIVHGNFGESAGKIDAPIGRNPSNRKQMAVVEN--------GKSAVTHF 211
Query: 276 TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ +S++ C+ TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 212 KVLEQFKGYSLIQCQLETGRTHQIRVHMAYIGHPVAGDPLY 252
>gi|422871013|ref|ZP_16917506.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1087]
gi|328946167|gb|EGG40312.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1087]
Length = 298
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K GRI V+ + Y VK I + L EP V+ + + I+ ++ DV + K
Sbjct: 33 IKDGRILVNGQAKKAKYAVKEGDIIYYELP--EPEVVEYVAEDIPLEIVYQDEDVAVINK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHIQDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 VALADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 PALTSFQVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|138894673|ref|YP_001125126.1| ribosomal large subunit pseudouridine synthase D-like protein
[Geobacillus thermodenitrificans NG80-2]
gi|196247711|ref|ZP_03146413.1| pseudouridine synthase, RluA family [Geobacillus sp. G11MC16]
gi|134266186|gb|ABO66381.1| ribosomal large subunit pseudouridine synthase D-like protein
[Geobacillus thermodenitrificans NG80-2]
gi|196212495|gb|EDY07252.1| pseudouridine synthase, RluA family [Geobacillus sp. G11MC16]
Length = 304
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 121/262 (46%), Gaps = 36/262 (13%)
Query: 81 TIVDLFAEEFKGRPYDYYVSA-------------VKCGRIQVDEEMVPVSY------TVK 121
TI EE+ G D ++A +K G + V+ V +Y TV
Sbjct: 3 TITFHIEEEYDGERIDKVIAALNDEWSRSQVQQWIKNGLVTVNGRTVKANYKSELGDTVA 62
Query: 122 SSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE- 180
S LH P+ + I ++ DVL V KP + VHP + + T+V L A
Sbjct: 63 ISPPEPEPLHVEPEPI---PLDIYYEDEDVLVVNKPRGMVVHPAPGHMRGTLVNALLAHC 119
Query: 181 HDLAP----LFP--VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFP 234
DL+ L P VHR+D+ SGLL++A+N + +Q+ V +RY A V+GV P
Sbjct: 120 RDLSGINGVLRPGIVHRIDKDTSGLLMVAKNDAAHRSLVEQLVNKTVTRRYKAIVHGVIP 179
Query: 235 EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITG 294
+D I + + A + ++ GK A T F + ++ V C+ TG
Sbjct: 180 HDYGTIDAPIGRDKRDRKKMAVTDEN-------GKEAVTHFRVLERFRQYTYVECQLETG 232
Query: 295 RTHQIRVHLQYTGYPIANDMLY 316
RTHQIRVH++Y GYP+A D Y
Sbjct: 233 RTHQIRVHMKYIGYPLAGDPQY 254
>gi|375260241|ref|YP_005019411.1| 23S rRNA pseudouridylate synthase C [Klebsiella oxytoca KCTC 1686]
gi|365909719|gb|AEX05172.1| 23S rRNA pseudouridylate synthase C [Klebsiella oxytoca KCTC 1686]
Length = 317
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 117/251 (46%), Gaps = 19/251 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ V Y V+ S+K
Sbjct: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEAGDEVRIPPVRVSEKE 77
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 137
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 138 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQAPLLK 197
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
N +SG+ + +GK + T+F ++ TH ++V C P+TGRTHQIRVH QY
Sbjct: 198 N------ILQSGERIVRVNQEGKPSETRF-KVEERYTHATLVRCSPVTGRTHQIRVHTQY 250
Query: 306 TGYPIANDMLY 316
G+PIA D Y
Sbjct: 251 AGHPIAFDDRY 261
>gi|423470106|ref|ZP_17446850.1| RluA family pseudouridine synthase [Bacillus cereus BAG6O-2]
gi|423558545|ref|ZP_17534847.1| RluA family pseudouridine synthase [Bacillus cereus MC67]
gi|401191813|gb|EJQ98835.1| RluA family pseudouridine synthase [Bacillus cereus MC67]
gi|402437358|gb|EJV69382.1| RluA family pseudouridine synthase [Bacillus cereus BAG6O-2]
Length = 302
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 121/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + K + V+ + V +Y VK + +I+ +
Sbjct: 10 AEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSVKGNYKVKGNDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ + ++ DVL V KP + VHP + K T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDVAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A GR E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIGRDKKERQSMTVDE--NGKNAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|409351550|ref|ZP_11234218.1| Pseudouridine synthase [Lactobacillus equicursoris CIP 110162]
gi|407876703|emb|CCK86276.1| Pseudouridine synthase [Lactobacillus equicursoris CIP 110162]
Length = 302
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 113/224 (50%), Gaps = 18/224 (8%)
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD---VSILQKEPDVLTVCKPPS 159
+ G++ V+ + VSY V++ +I + EP + + + I+ ++ DV+ V KP
Sbjct: 36 QAGQVLVNGKKTKVSYKVEAGDQIEVNILPLEPLDLEPENIPLDIVYEDDDVIVVNKPQG 95
Query: 160 VPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADLF 212
+ VHP + +T+V +L DLA P VHR+D+ SGLL++A+NA +
Sbjct: 96 MVVHPAAGHPNHTLVNALLYHTRDLADSPEGFRPGIVHRIDKDTSGLLMVAKNAKARESL 155
Query: 213 RQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAAC 272
Q+ + Y+A V+G F E VD I N + A + GK A
Sbjct: 156 EAQLAQKSNKRIYLAIVHGNFAEKSGTVDAPIARNPRDRKQMAVVEN--------GKNAV 207
Query: 273 TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + +S++ C+ TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 208 THFKVLEQYPGYSLIECQLETGRTHQIRVHMAYIGHPLAGDPLY 251
>gi|304312939|ref|YP_003812537.1| ribosomal large subunit pseudouridine synthase C [gamma
proteobacterium HdN1]
gi|301798672|emb|CBL46904.1| Ribosomal large subunit pseudouridine synthase C [gamma
proteobacterium HdN1]
Length = 311
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 121/259 (46%), Gaps = 25/259 (9%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTV-----------K 121
V+ +AG+ I + KG P ++ G ++V++ + Y V +
Sbjct: 6 VEAEYAGQRIDNFLVARLKGVPKSVIYRCLRKGEVRVNKGRIKPDYRVQGGDLIRIPPLR 65
Query: 122 SSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH 181
S++ +H E + +IL ++ ++ + KP + VH VG+++A
Sbjct: 66 RSEQSDDEIHVGERIRNLLEGAILYEDEGLIVLNKPAGMAVHGG----SGVSVGVIEALR 121
Query: 182 DLAPLFP----VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237
+ PL VHRLDR SG L++A+ S+ + +Q++AG++ K Y A V G +
Sbjct: 122 AIRPLSRHLELVHRLDRDTSGCLMVAKKRSRLRVLHEQLQAGEIRKVYWALVEGRWKGKF 181
Query: 238 QVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTH 297
+ +D + G G+ + +GK + T+F + S+V P+TGRTH
Sbjct: 182 RRIDAPLQKFGEQG------GERIVKVSQQGKPSSTEFVLLRHFEETSLVEASPLTGRTH 235
Query: 298 QIRVHLQYTGYPIANDMLY 316
QIRVH Q+ G+PI D Y
Sbjct: 236 QIRVHAQFAGHPIVGDDKY 254
>gi|312872998|ref|ZP_07733058.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2062A-h1]
gi|325912701|ref|ZP_08175084.1| pseudouridine synthase, RluA family [Lactobacillus iners UPII 60-B]
gi|311091520|gb|EFQ49904.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2062A-h1]
gi|325478122|gb|EGC81251.1| pseudouridine synthase, RluA family [Lactobacillus iners UPII 60-B]
Length = 311
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 20/226 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA---WDVSILQKEPDVLTVCKPP 158
+K I + +SY V ++ KI+ + +P + ++ I+ ++ DV+ V KP
Sbjct: 40 IKQKLITTNGLQTKLSYKVNTNDKINIEIPSPQPLSLDPENLNLDIIYEDDDVIVVNKPQ 99
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAP---LF---PVHRLDRLVSGLLILARNASKADL 211
+ VHP + +T+V G++ +LA +F VHR+D+ SGLL++A+NA+
Sbjct: 100 GMVVHPSAGHPDHTLVNGLIYHTKNLAKCDEIFRPGIVHRIDKDTSGLLMIAKNATARIS 159
Query: 212 FRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKA 270
+Q+ A K+ KR YIA V+ F V+D I N + A GK
Sbjct: 160 LEKQL-ANKINKREYIAIVHANFKHSSGVIDAPIGRNPYQRQQMAVVAS--------GKK 210
Query: 271 ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T FT + +S+V C TGRTHQIRVH+ Y G+PIA D LY
Sbjct: 211 AITHFTVLEQFPGYSLVKCVLETGRTHQIRVHMSYIGHPIAGDPLY 256
>gi|379727342|ref|YP_005319527.1| ribosomal large subunit pseudouridine synthase D [Melissococcus
plutonius DAT561]
gi|376318245|dbj|BAL62032.1| ribosomal large subunit pseudouridine synthase D [Melissococcus
plutonius DAT561]
Length = 302
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 124/244 (50%), Gaps = 22/244 (9%)
Query: 85 LFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD--- 141
+ +EE +K +QV+ ++V +Y V+ + ++ + +P +M
Sbjct: 19 VLSEELIAYSRSQIQQWLKDSLVQVNNKVVKANYKVQPADEV--IIQLPKPKMMVVSPEN 76
Query: 142 --VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPLFPV------HRL 192
+ I+ ++ DV+ + KP + VHP + K T+V +L DL+ + V HR+
Sbjct: 77 IPLDIVYEDQDVVVINKPQGMVVHPSAGHFKGTMVHALLYHIKDLSSINDVIRPGIVHRI 136
Query: 193 DRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGR 252
D+ SGLLI+A+N + +Q++ ++++YIA ++G P + +D I + + +
Sbjct: 137 DKDTSGLLIVAKNNQAHEALAKQLKDKTILRKYIALIHGEVPHEQGTIDAPIGRSKTNRK 196
Query: 253 STAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAN 312
A D G++A T F + ++++ + TGRTHQIRVH++Y G+P+A
Sbjct: 197 MQAIIKD--------GRSAVTHFKVLEKFTGYTLIELQLETGRTHQIRVHMKYIGHPVAG 248
Query: 313 DMLY 316
D +Y
Sbjct: 249 DPVY 252
>gi|309808015|ref|ZP_07701936.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
01V1-a]
gi|308168744|gb|EFO70841.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
01V1-a]
Length = 311
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 20/226 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA---WDVSILQKEPDVLTVCKPP 158
+K I + +SY V ++ KI+ + +P + ++ I+ ++ DV+ V KP
Sbjct: 40 IKQKLITTNGLQTKLSYKVNTNDKINIEIPSPQPLSLDPENLNLDIIYEDDDVIVVNKPQ 99
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAP---LF---PVHRLDRLVSGLLILARNASKADL 211
+ VHP + +T+V G++ +LA +F VHR+D+ SGLL++A+NA+
Sbjct: 100 GMVVHPSAGHPDHTLVNGLIYHTKNLAECDEIFRPGIVHRIDKDTSGLLMIAKNATARIS 159
Query: 212 FRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKA 270
+Q+ A K+ KR YIA V+ F V+D I N + A GK
Sbjct: 160 LEKQL-ANKINKREYIAIVHANFKHSSGVIDAPIGRNPYQRQQMAVVAS--------GKK 210
Query: 271 ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T FT + +S+V C TGRTHQIRVH+ Y G+PIA D LY
Sbjct: 211 AITHFTVLEQFPGYSLVKCVLETGRTHQIRVHMSYIGHPIAGDPLY 256
>gi|229061498|ref|ZP_04198842.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH603]
gi|228717732|gb|EEL69382.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH603]
Length = 302
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 94/183 (51%), Gaps = 15/183 (8%)
Query: 141 DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLD 193
++ + ++ DVL V KP + VHP + K T+V G++ DL+ + VHR+D
Sbjct: 80 NLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCTDLSGINGVMRPGIVHRID 139
Query: 194 RLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRS 253
+ SGLL++A+N + Q+ A V +RY A V+GV P + +D A GR
Sbjct: 140 KDTSGLLMVAKNDVAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID------APIGRD 193
Query: 254 TAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
E D GK A T F + ++V C TGRTHQIRVH++Y GYP+A D
Sbjct: 194 KKERQSMTVDE--NGKNAVTHFQVLDRFKDFTLVECRLETGRTHQIRVHMKYIGYPLAGD 251
Query: 314 MLY 316
Y
Sbjct: 252 PKY 254
>gi|149916925|ref|ZP_01905426.1| pseudouridine synthase [Plesiocystis pacifica SIR-1]
gi|149822203|gb|EDM81594.1| pseudouridine synthase [Plesiocystis pacifica SIR-1]
Length = 255
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 98/187 (52%), Gaps = 12/187 (6%)
Query: 136 PVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRL 195
P + ++IL ++ +L V KP + VH + +V +L+A+ D A +FP+HRLDR
Sbjct: 15 PEVGTALTILHRDDRLLAVAKPSGMLVHRGWAADEAVLVDLLRAQLDGADVFPLHRLDRG 74
Query: 196 VSGLLILARNASKADLFRQQIEAGK--VIKRYIARVNGVFPEGEQVVDVNINYNASAGRS 253
SG+L LA + A QQ EA + K Y+A V G+ PE VD + + S
Sbjct: 75 TSGVLCLALDKEAAAFVGQQFEAHAPPLTKTYLALVRGLAPEAVD-VDHGLRPHDSKTGK 133
Query: 254 TAESGDSLGDTPLKGKAACTKFTRISTNG----THSIVLCEPITGRTHQIRVHLQYTGYP 309
++ D+L P A T+F RI ++S+V P TGRTHQIR HL++ +P
Sbjct: 134 RRKAADALPRIP-----AQTRFERIEARQIGERSYSLVKALPRTGRTHQIRRHLKHLAHP 188
Query: 310 IANDMLY 316
I D+ Y
Sbjct: 189 IIGDVRY 195
>gi|423128587|ref|ZP_17116266.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5250]
gi|376393069|gb|EHT05730.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5250]
Length = 331
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 117/251 (46%), Gaps = 19/251 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ V Y V+ ++K
Sbjct: 32 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEAGDEVRIPPVRVTEKE 91
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 92 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 151
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 152 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQAPLLK 211
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
N +SG+ + +GK + T+F ++ TH ++V C P+TGRTHQIRVH QY
Sbjct: 212 N------ILQSGERIVRVNQEGKPSETRF-KVEERFTHATLVRCSPVTGRTHQIRVHTQY 264
Query: 306 TGYPIANDMLY 316
G+PIA D Y
Sbjct: 265 AGHPIAFDDRY 275
>gi|259500628|ref|ZP_05743530.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners DSM 13335]
gi|302191317|ref|ZP_07267571.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners AB-1]
gi|259168012|gb|EEW52507.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners DSM 13335]
Length = 311
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 20/226 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA---WDVSILQKEPDVLTVCKPP 158
+K I + +SY V ++ KI+ + +P + ++ I+ ++ DV+ V KP
Sbjct: 40 IKQKLITTNGLQTKLSYKVNTNDKINIEIPSPQPLSLDPENLNLDIIYEDDDVIVVNKPQ 99
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAP---LF---PVHRLDRLVSGLLILARNASKADL 211
+ VHP + +T+V G++ +LA +F VHR+D+ SGLL++A+NA+
Sbjct: 100 GMVVHPSAGHPDHTLVNGLIYHTKNLAECDEIFRPGIVHRIDKDTSGLLMIAKNATARIS 159
Query: 212 FRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKA 270
+Q+ A K+ KR YIA V+ F V+D I N + A GK
Sbjct: 160 LEKQL-ANKINKREYIAIVHANFKHSSGVIDAPIGRNPYQRQQMAVVAS--------GKK 210
Query: 271 ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T FT + +S+V C TGRTHQIRVH+ Y G+PIA D LY
Sbjct: 211 AITHFTVLEQFPGYSLVKCILETGRTHQIRVHMSYIGHPIAGDPLY 256
>gi|171778236|ref|ZP_02919442.1| hypothetical protein STRINF_00281 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282936|gb|EDT48360.1| pseudouridine synthase, RluA family [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
Length = 298
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ + V Y VK +++ + E V+ + + I+ ++ DV V K
Sbjct: 31 IKKGTVLVNGKAVKAKYAVKVGDVVTYEVPEEE--VLEYKAENIPLDIVYEDEDVAVVYK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ + VHR+D+ SGLL++A+N +
Sbjct: 89 PQGMVVHPSAGHTSGTLVNALMYHIKDLSSINGVIRPGIVHRIDKDTSGLLMIAKNDTAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ +++ K +++Y+A V+G P V++ A GRS E KGK
Sbjct: 149 NALAAELKDKKSLRKYVAIVHGNIPNDRGVIE------APIGRS--EKDRKKQAVTAKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F + G +++V TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 201 PAVTHFKVLERFGNYTLVELTLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|229168633|ref|ZP_04296355.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH621]
gi|228614789|gb|EEK71892.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH621]
Length = 302
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 121/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + K + V+ + V +Y VK + +I+ +
Sbjct: 10 AEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSVKGNYKVKGNDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ + ++ DVL V KP + VHP + K T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ V +RY A V+GV P + ++D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVEKTVTRRYKAIVHGVIPHDKGIID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A GR E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIGRDKKERQSMTVDE--NGKNAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|94543711|gb|ABF33759.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes MGAS10270]
Length = 296
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+++ YTV++ I L + E V+ + + I+ ++ + + K
Sbjct: 31 IKQGLVLVNDQQKKAKYTVQAGDVICFELPKEE--VLEYQAQNIPLDIIYEDDALAIINK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ + VHR+D+ SGLL++A+ +
Sbjct: 89 PQGMVVHPSAGHPSGTMVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKTDAAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
++++A K +++Y+A V+G P +++ I + + A + KGK
Sbjct: 149 QALAEELKAKKSLRKYLAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+FT + G +S+V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 201 EAVTRFTVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|322385620|ref|ZP_08059264.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
cristatus ATCC 51100]
gi|417922861|ref|ZP_12566347.1| pseudouridine synthase, RluA family [Streptococcus cristatus ATCC
51100]
gi|321270358|gb|EFX53274.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
cristatus ATCC 51100]
gi|342832009|gb|EGU66312.1| pseudouridine synthase, RluA family [Streptococcus cristatus ATCC
51100]
Length = 300
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G+I V+ E Y VK IS+ + +P V+ + + I+ ++ DV V K
Sbjct: 33 IKNGQILVNGEAKKAKYAVKEGDVISYEVP--DPEVVEYVAEDLPLEIVYQDEDVAVVNK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 LALADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 PALTRFQVLERFGDYTLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|400406173|ref|YP_006588921.1| pseudouridine synthase, RluA family [secondary endosymbiont of
Heteropsylla cubana]
gi|400364426|gb|AFP85493.1| pseudouridine synthase, RluA family [secondary endosymbiont of
Heteropsylla cubana]
Length = 316
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 126/263 (47%), Gaps = 18/263 (6%)
Query: 65 YYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ 124
+ +FI+ K+ +G+ I + +FKG P ++ G I+V+++ V Y +++
Sbjct: 6 FNIQFINISKDE-SGQRIDNFLCRKFKGVPKSMIYRILRTGEIRVNKKRVKAEYKIQTFD 64
Query: 125 KIS----HFLHRHEPP-------VMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTV 173
K+ + H + P + A + S++ ++ +L + K + VH +
Sbjct: 65 KVRIPPLRYSHEKKIPFSVKLNKISALNNSVIYEDDYILILNKLTGIAVHGGSGLHFGVI 124
Query: 174 VGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVF 233
G+ L VHRLD+ SG+L++A+ S L +Q+ ++ K Y+A V G +
Sbjct: 125 EGLRTLRPHTNFLELVHRLDKDTSGVLLIAKKRSALHLLHKQLRDKEMKKDYVALVRGQW 184
Query: 234 PEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPIT 293
P + + +A + +G + +GK A T F + +++ PIT
Sbjct: 185 PNTLRSI------SAPLLKKKLYNGKHIVQVHNEGKQAKTYFQIKERFTSATLLSVHPIT 238
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GRTHQIR+H QY+G+PIA D LY
Sbjct: 239 GRTHQIRLHTQYSGHPIAFDNLY 261
>gi|423119726|ref|ZP_17107410.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5246]
gi|376397565|gb|EHT10196.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5246]
Length = 331
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 117/251 (46%), Gaps = 19/251 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKI----------- 126
AG+ I + + KG P ++ G ++V+++ V Y +++ +I
Sbjct: 32 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEAGDEIRIPPVRVAERE 91
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 92 EEAVSPHLQKVSALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 151
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 152 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHTKVVQAPLLK 211
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
N +SG+ + +GK + T+F ++ TH ++V C P+TGRTHQIRVH QY
Sbjct: 212 N------ILQSGERIVRVSQEGKPSETRF-KVEERYTHATLVRCSPVTGRTHQIRVHTQY 264
Query: 306 TGYPIANDMLY 316
G+PIA D Y
Sbjct: 265 AGHPIAFDDRY 275
>gi|56419681|ref|YP_146999.1| hypothetical protein GK1146 [Geobacillus kaustophilus HTA426]
gi|261419335|ref|YP_003253017.1| pseudouridine synthase [Geobacillus sp. Y412MC61]
gi|297530695|ref|YP_003671970.1| pseudouridine synthase [Geobacillus sp. C56-T3]
gi|319766151|ref|YP_004131652.1| pseudouridine synthase [Geobacillus sp. Y412MC52]
gi|56379523|dbj|BAD75431.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|261375792|gb|ACX78535.1| pseudouridine synthase, RluA family [Geobacillus sp. Y412MC61]
gi|297253947|gb|ADI27393.1| pseudouridine synthase, RluA family [Geobacillus sp. C56-T3]
gi|317111017|gb|ADU93509.1| pseudouridine synthase, RluA family [Geobacillus sp. Y412MC52]
Length = 304
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 124/258 (48%), Gaps = 23/258 (8%)
Query: 72 HVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS---- 127
H+++ + G+ I + A + +K G + V+ + V +Y ++ ++
Sbjct: 7 HIEDEYDGERIDKVIAALNEEWSRSQVQQWIKNGLVTVNGQTVKANYKCEAGDSVAVSPP 66
Query: 128 --HFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE-HDLA 184
LH P+ + I ++ DVL V KP + VHP + + T+V L A DL+
Sbjct: 67 EPEPLHVEPEPI---PLDIYYEDEDVLVVNKPRGMVVHPAPGHMRGTLVNALLAHCRDLS 123
Query: 185 P----LFP--VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQ 238
L P VHR+D+ SGLL++A+N + +Q+ V +RY A V+GV P
Sbjct: 124 GINGVLRPGIVHRIDKDTSGLLMVAKNDAAHRSLVEQLVNKTVTRRYKAIVHGVIPHDYG 183
Query: 239 VVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
+D I + + A + ++ GK A T F + ++ V C+ TGRTHQ
Sbjct: 184 TIDAPIGRDKRDRKKMAVTEEN-------GKEAVTHFRVLERFRHYTYVECQLETGRTHQ 236
Query: 299 IRVHLQYTGYPIANDMLY 316
IRVH++Y GYP+A D Y
Sbjct: 237 IRVHMKYIGYPLAGDPQY 254
>gi|152976253|ref|YP_001375770.1| RluA family pseudouridine synthase [Bacillus cytotoxicus NVH
391-98]
gi|152025005|gb|ABS22775.1| pseudouridine synthase, RluA family [Bacillus cytotoxicus NVH
391-98]
Length = 302
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 114/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFL-HRHEPPVMAWDVS--ILQKEPDVLTVCKPP 158
+K G I V+ + V +Y VK + +I+ + E + A D++ I ++ DVL V KP
Sbjct: 38 IKDGVITVNGKTVKGNYKVKENDEITVTVPEPEELDIRAEDMNLEIYYEDADVLVVNKPR 97
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAPLFPV------HRLDRLVSGLLILARNASKADL 211
+ VHP + T+V G++ DL+ + V HR+D+ SGLL++A+N +
Sbjct: 98 GMVVHPAPGHTSGTLVNGLMYHCTDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDMAHES 157
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q+ V +RY A V+GV P + +D I + +S A + GK A
Sbjct: 158 LVNQLVEKTVTRRYQAIVHGVIPHDKGTIDAPIARDKKDRQSMAVDEN--------GKHA 209
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + ++V C TGRTHQIRVH++Y GYP+A D Y
Sbjct: 210 VTHFQVLERFKDFTLVECRLETGRTHQIRVHMKYIGYPLAGDPKY 254
>gi|403234869|ref|ZP_10913455.1| hypothetical protein B1040_03715 [Bacillus sp. 10403023]
Length = 302
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 116/247 (46%), Gaps = 24/247 (9%)
Query: 82 IVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM--- 138
IV F E+ +++ K G I V+ + +Y V KI + EP +
Sbjct: 20 IVSAFNSEWSRTQVQFWI---KDGNITVNGSRIKPNYKVNIGDKIQ--IEIPEPQTLDVV 74
Query: 139 --AWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE-HDLA----PLFP--V 189
D+ I ++ DVL V KP + VHP + T+V L A DL+ L P V
Sbjct: 75 PEEIDLDIYYEDADVLVVNKPKGMVVHPAPGHITGTLVNGLMAHCKDLSGINGVLRPGIV 134
Query: 190 HRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNAS 249
HR+D+ SGLL++A+N + Q+ V ++Y A V+GV P + +D A
Sbjct: 135 HRIDKDTSGLLMVAKNDVAHESLVNQLVEKTVTRKYKAIVHGVIPHDQGTID------AP 188
Query: 250 AGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYP 309
GR + S+ T K A T F + + + C+ TGRTHQIRVH++Y GYP
Sbjct: 189 IGRDKKDR-QSMTVTDENSKVAVTHFNVLERFKEFTFIECQLETGRTHQIRVHMKYIGYP 247
Query: 310 IANDMLY 316
+A D Y
Sbjct: 248 LAGDPKY 254
>gi|171463620|ref|YP_001797733.1| pseudouridine synthase Rlu family protein [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171193158|gb|ACB44119.1| pseudouridine synthase, RluA family [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 344
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 135/289 (46%), Gaps = 35/289 (12%)
Query: 42 QTPANPPVKEDYIFRDGRRNVKPYYFEFIS-HVKNRWAGKTIVDLFAEEFKGRPYDYYVS 100
QTP + P+ DYI + +FIS + + AG+ + + + +
Sbjct: 5 QTPESNPI--DYIDDE----------DFISLEIPLKMAGERLDKVLVGTLPDYSRNRLKT 52
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVC 155
V+ G + VD ++ Y ++ + I F + P A++ + ++ ++ D++ +
Sbjct: 53 WVEAGAVMVDGKVTKARYLLRGGESIKVF-PQEMPEQFAFNPEDIPLDVVYEDGDIIVIN 111
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP----VHRLDRLVSGLLILARNASKADL 211
KPP + VHP T++ L + +FP VHRLD+ SGL+++AR +
Sbjct: 112 KPPGLVVHPAAGNWSGTLLNGLLFRYPELKMFPRAGIVHRLDKDTSGLMVVARTSQAQTS 171
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+Q++ V +RY+A V G P +V+ AS GR + +P +GK A
Sbjct: 172 LVRQLQDRTVGRRYLAWVWGDAPSQGKVL-------ASVGRDQRDRLKMAAGSP-QGKPA 223
Query: 272 CTKFTRISTNGTH----SIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F R+S +++ C TGRTHQIRVH + G+P+ D +Y
Sbjct: 224 ATLFRRLSKGLVQETPVTLLECRLETGRTHQIRVHFESLGFPLVGDPVY 272
>gi|414160474|ref|ZP_11416741.1| RluA family pseudouridine synthase [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410878246|gb|EKS26132.1| RluA family pseudouridine synthase [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 305
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 24/228 (10%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA------WDVSILQKEPDVLTVC 155
+K G ++V++++V +Y +K + ++ + V A D+ I ++ DV V
Sbjct: 38 IKEGLVEVNQKVVKANYKMKKNDQVQV---TEKETVEADIQPENLDLDIYYEDEDVAIVY 94
Query: 156 KPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP G Y V G++ DL+ + VHR+D+ SGLL++A+N
Sbjct: 95 KPKGMVVHPSPGHYSGTLVNGLMYQIKDLSGINGEIRPGIVHRIDKDTSGLLMVAKNDIA 154
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
+Q+ V ++Y A V+G P +D I N + ++ D + D G
Sbjct: 155 HRGLVEQLMDKTVTRKYTALVHGNIPHDYGTIDAPIGRN----KVDRQAMDVVDD----G 206
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T F + +++V CE TGRTHQIRVH++Y GYP+ D Y
Sbjct: 207 KDAITHFNVLEHFNNYTLVECELETGRTHQIRVHMKYIGYPLVGDPKY 254
>gi|423395807|ref|ZP_17373008.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-1]
gi|423406683|ref|ZP_17383832.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-3]
gi|401653549|gb|EJS71093.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-1]
gi|401659973|gb|EJS77456.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-3]
Length = 302
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 120/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + K + V+ + V +Y VK + +I+ +
Sbjct: 10 AEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKAVKGNYKVKGNDEITVTIP-- 67
Query: 134 EPPVMA-----WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
EP + ++ I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 68 EPEALDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A GR E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIGRDKKERQSMTVDE--NGKNAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|418960929|ref|ZP_13512816.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius SMXD51]
gi|380344596|gb|EIA32942.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius SMXD51]
Length = 304
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 129/272 (47%), Gaps = 22/272 (8%)
Query: 67 FEFISHVKNRWAGKTIVDLFAEEFK-GRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQK 125
++F V ++G ++ DL +E++ R + +++ + ++++ P++ V+ +QK
Sbjct: 4 YKFERTVNAEFSGISLRDLLSEKWLLPRKFIHFLRIRE--NVKINGNYYPMNTIVQGNQK 61
Query: 126 ISHFLHRHEPPVMAWD--------VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGIL 177
I E + + I+ + D+L V KP + HP Y T++ +
Sbjct: 62 IELIFEGDEFRTATSNYIVDKGRKIPIIFENEDLLVVNKPQGIKSHPNQPYETGTLMNYI 121
Query: 178 QAEHDLAPLFP--VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
D+ P VHRLD L SG +I+A+N + + I + + Y+A G+F +
Sbjct: 122 AGYLDVKDEHPYMVHRLDMLTSGAMIVAKNPVVVPILTRLISTHTIKRDYLAVTEGIFDQ 181
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGR 295
E V+D+ I + + R D +G P A T + I G +S+V TGR
Sbjct: 182 KEGVIDLPIGKDENDKRK--RKVDGIGALP-----ARTHYQVIKEFGNNSVVYLRLETGR 234
Query: 296 THQIRVHLQYTGYPIANDMLYLCEHVTHREGM 327
THQ+RVHL G+PI D+LY HV+ + M
Sbjct: 235 THQLRVHLSAMGHPIVGDVLY--NHVSEEKHM 264
>gi|372211213|ref|ZP_09499015.1| pseudouridine synthase [Flavobacteriaceae bacterium S85]
Length = 317
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 10/246 (4%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHR 132
VK ++ G+TI+D F E + ++S ++ + ++ + + VK H
Sbjct: 33 VKKKYEGRTIIDFFLEVVPRSSKELWLSKIRNKTLLINGKPANENTIVKGGDITQHTSEP 92
Query: 133 HEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRL 192
P ++ + +L + +L V KP +P+HP G++ KN++ IL+ +HRL
Sbjct: 93 KIEPDVSIKIDLLYNDDKLLIVNKPAPLPMHPSGRFNKNSLTEILKLAFPEEDFKIIHRL 152
Query: 193 DRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGR 252
D +G+++ +N A Q E K+YIA V G+ + E ++ I + G
Sbjct: 153 DANTTGIVVFGKNKEIATAIGTQFEQKLTTKKYIALVEGIVEKEEFAMNSKIGTKKTIGG 212
Query: 253 STAESGDSLGDTPLKGKAACTKFTRIS--TNGTHSIVLCEPITGRTHQIRVHLQYTGYPI 310
A + G+ A T+F + N +++ P TGRT+QIR+HL + I
Sbjct: 213 GRASDQN--------GQEAYTEFKVLERRQNTKQTLLEVTPHTGRTNQIRLHLAQLKHAI 264
Query: 311 ANDMLY 316
D Y
Sbjct: 265 VGDWGY 270
>gi|421179864|ref|ZP_15637438.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa E2]
gi|404546442|gb|EKA55496.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa E2]
Length = 318
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 18/251 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ + Y +++ ++ R
Sbjct: 21 AGQRIDNFLIARLKGAPRTLIYRILRKGEVRVNKGRIKPDYRLQAGDQVRVPPLRLAERD 80
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
+P +A + +I+ ++ ++ V KP + VH + Q D +
Sbjct: 81 QPAPLAQGLLERMEAAIVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQLRPDAKDIE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVI-KRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SGLL++A+ S + + K++ KRY A V G +P G++ N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHEALRGEKIVDKRYHALVRGHWPAGKK------NV 194
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
A ++ SG+ + + ++GK A T+F + G ++V PITGRTHQIRVH ++
Sbjct: 195 RAPLLKNNLRSGERMVEVNVEGKDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKH 254
Query: 306 TGYPIANDMLY 316
G+ IA D Y
Sbjct: 255 AGHAIAGDPKY 265
>gi|145589104|ref|YP_001155701.1| RluA family pseudouridine synthase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047510|gb|ABP34137.1| ribosomal large subunit pseudouridine synthase D [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 318
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 122/248 (49%), Gaps = 22/248 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
V+ G + VD ++ Y ++ + + F + P A+ + ++ ++ ++ + K
Sbjct: 26 VEAGAVMVDGKVTKARYLLRGGESVKVF-PQEMPEQFAFSPENIPLEVVYEDDSIIVINK 84
Query: 157 PPSVPVHPC-GQYRKNTVVGILQAEHDLAPL---FPVHRLDRLVSGLLILARNASKADLF 212
PP + VHP G + + G+L +L L VHRLD+ SGL+++AR A
Sbjct: 85 PPGLVVHPAAGNWSGTLLNGLLHRFPELKSLPRAGIVHRLDKDTSGLMVVARTAHAQTAL 144
Query: 213 RQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAAC 272
+Q++ V +RY+A V G P +V+ AS GR + +P +GK A
Sbjct: 145 VRQLQERTVGRRYLAWVWGDAPSQGKVL-------ASVGRDQRDRLKMAAGSP-QGKPAA 196
Query: 273 TKFTRIST----NGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMS 328
T F RI+ N +++ C TGRTHQIRVHL+ G+P+ D +Y + + +S
Sbjct: 197 TLFRRIAKGNVENAPVALLECRLETGRTHQIRVHLESLGFPLVGDPVYRKKAPGVAKALS 256
Query: 329 ADRAAAYS 336
DR A ++
Sbjct: 257 FDRQALHA 264
>gi|222152892|ref|YP_002562069.1| RNA pseudouridylate synthase [Streptococcus uberis 0140J]
gi|222113705|emb|CAR41656.1| putative RNA pseudouridylate synthase [Streptococcus uberis 0140J]
Length = 296
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ E V YTVK IS+ L E ++ ++ + I+ ++ + + K
Sbjct: 31 IKKGTVLVNGEPVKAKYTVKEGDIISYQLPEEE--ILDYEAEDIPIEIVYEDEYLAIINK 88
Query: 157 PPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKA 209
+ VHP + T+V +L DL+ + VHR+D+ SGLL++A+N
Sbjct: 89 AQGMVVHPSAGHSSGTLVNALLYHIKDLSTINGVVRPGIVHRIDKDTSGLLMIAKNDKAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ +++A K +++Y+A V+G P +++ I + + A + KGK
Sbjct: 149 HILADELKAKKSLRKYLAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G ++V TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 201 DAITRFQVVERFGDFTLVELSLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|423367937|ref|ZP_17345369.1| RluA family pseudouridine synthase [Bacillus cereus VD142]
gi|401082798|gb|EJP91063.1| RluA family pseudouridine synthase [Bacillus cereus VD142]
Length = 302
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 120/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV-------------KCGRIQVDEEMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + K + V+ + V +Y VK + +I+ +
Sbjct: 10 AEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSVKGNYKVKGNDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ + ++ DVL V KP + VHP + K T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDVAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A GR E D GK A T F + + V C TGRTHQIRV
Sbjct: 188 ------APIGRDKKERQSMTVDE--NGKNAVTHFQVLERFKDFTFVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMRYIGYPLAGDPKY 254
>gi|392428592|ref|YP_006469603.1| 23S rRNA pseudouridine synthase [Streptococcus intermedius JTH08]
gi|419777226|ref|ZP_14303143.1| pseudouridine synthase, RluA family [Streptococcus intermedius
SK54]
gi|383845113|gb|EID82518.1| pseudouridine synthase, RluA family [Streptococcus intermedius
SK54]
gi|391757738|dbj|BAM23355.1| 23S rRNA pseudouridine synthase [Streptococcus intermedius JTH08]
Length = 298
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G+I V+ ++ Y VK+ I++ L EP + + + I+ ++ DV V K
Sbjct: 31 IKSGQILVNGQVKKAKYAVKTGDVITYELP--EPETLEYVSENLPLDIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
+ VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 AQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++A K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 IKLADELKAKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAITRFHVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDGVY 247
>gi|139473995|ref|YP_001128711.1| RNA pseudouridylate synthase [Streptococcus pyogenes str. Manfredo]
gi|134272242|emb|CAM30494.1| putative RNA pseudouridylate synthase [Streptococcus pyogenes str.
Manfredo]
Length = 296
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ + YTV++ I L + E V+ + + I+ ++ + + K
Sbjct: 31 IKQGLVLVNGQQKKAKYTVQAGDVICFELPKEE--VLEYQAQNIPLDIIYEDDALAIINK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ + VHR+D+ SGLL++A+ +
Sbjct: 89 PQGMVVHPSAGHPSGTMVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKTDAAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ ++++A K +++Y+A V+G P +++ I + + A + KGK
Sbjct: 149 QVLTEELKAKKSLRKYLAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+FT + G +S+V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 201 EAVTRFTVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|365904068|ref|ZP_09441827.1| pseudouridine synthase [Lactobacillus versmoldensis KCTC 3814]
Length = 297
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 125/254 (49%), Gaps = 22/254 (8%)
Query: 79 GKTIVDLFAEEFKGRPYDYYVSA-VKCGRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPP 136
GK +D F +E +S +K I V+ +++ Y + + ++S F E P
Sbjct: 10 GKVRLDKFIDEQMSELSRSQISKFIKDSEITVNNQVITKTGYKLVNGDEVS-FTIPAEKP 68
Query: 137 VMAWD----VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQ-----AEHDLAPLF 187
+ A + I+ ++ DVL V KP + VHP +R T+V + + DL
Sbjct: 69 IEAIPQDIPLDIVYEDDDVLVVNKPQGMVVHPAAGHRDGTLVNAILYHSKINDDDLIRPG 128
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHR+D+ SGLL++A+N Q++ ++ Y+A V+G F E + ++ N
Sbjct: 129 IVHRIDKDTSGLLMVAKNNLAKQSLMNQLKEKSNLREYVAIVHGNFKERKGII------N 182
Query: 248 ASAGRS-TAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
A GR+ ++ D G+ A T F I +S+V + TGRTHQIRVH+QY
Sbjct: 183 APLGRAKNNRKKQAIVDD---GRKAVTHFEVIEQFEGYSLVKLKLETGRTHQIRVHMQYI 239
Query: 307 GYPIANDMLYLCEH 320
G+P+A D LY +H
Sbjct: 240 GHPVAGDPLYGPKH 253
>gi|238854437|ref|ZP_04644777.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii 269-3]
gi|260664477|ref|ZP_05865329.1| pseudouridylate synthase [Lactobacillus jensenii SJ-7A-US]
gi|313472076|ref|ZP_07812568.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii 1153]
gi|238832930|gb|EEQ25227.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii 269-3]
gi|239530107|gb|EEQ69108.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii 1153]
gi|260561542|gb|EEX27514.1| pseudouridylate synthase [Lactobacillus jensenii SJ-7A-US]
Length = 301
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 111/232 (47%), Gaps = 32/232 (13%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTV 154
+ G I V+ + SY V KIS H P ++ +V I+ ++ DV+ V
Sbjct: 34 LTSGDILVNSKQEKPSYKVAIGDKIS----VHVPKLVPLNVEPEDIPLDIVYEDNDVIVV 89
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP-------VHRLDRLVSGLLILARNAS 207
KP + VHP + +T+V L P VHR+D+ SGLL++A+N
Sbjct: 90 NKPQGMVVHPSAGHPNHTLVNALMNHTKELAASPEGFRPGIVHRIDKDTSGLLMIAKNTQ 149
Query: 208 KADLFRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTA--ESGDSLGDT 264
+ Q+ A K KR Y+A V+G F E +D I N + A ESG
Sbjct: 150 ARESLESQL-AHKTNKRVYLAIVHGNFKEASGTIDAPIARNPKERKKMAVVESG------ 202
Query: 265 PLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
KAA T F + +++V C+ TGRTHQIRVH++Y G+P+A D LY
Sbjct: 203 ----KAAVTHFKVLEQYPNYALVSCQLETGRTHQIRVHMKYIGHPLAGDPLY 250
>gi|326795265|ref|YP_004313085.1| pseudouridine synthase [Marinomonas mediterranea MMB-1]
gi|326546029|gb|ADZ91249.1| pseudouridine synthase, RluA family [Marinomonas mediterranea
MMB-1]
Length = 324
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 124/253 (49%), Gaps = 25/253 (9%)
Query: 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ--KISHFL--HRHE 134
G+ I + E KG P + ++ G I+V+++ Y ++S +I+ + R +
Sbjct: 27 GQRIDNFLITELKGLPKGKIYNLLRKGEIRVNKKRTKPDYRLQSGDIVRIAPLVLPERAD 86
Query: 135 PPVMAWDVS------ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP 188
P +A + I+ ++ +L V KP + VH G+++ + PL
Sbjct: 87 KPTVAEGLKAQIESRIIYEDKGLLVVNKPSGLAVHGGS----GLSFGLVEVVRQMRPLEK 142
Query: 189 ----VHRLDRLVSGLLILARNASKADLFRQQI-EAGKVIKRYIARVNGVFPEGEQVVDVN 243
VHRLDR SGL+++A+ S L + + E V K Y+A V+G + + +Q VD
Sbjct: 143 FVELVHRLDRDTSGLIMIAKRRSVLKLLHEALREKSGVQKTYLALVHGAWSKRKQKVD-- 200
Query: 244 INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHL 303
A ++ +SG+ + +GK + T+F + S++ CEP+TGRTHQIRVH
Sbjct: 201 ----APLLKNELKSGERVVRVNPEGKESLTRFNLVREFEGFSLIQCEPVTGRTHQIRVHT 256
Query: 304 QYTGYPIANDMLY 316
Q+ G+ I D Y
Sbjct: 257 QFAGHSIVGDDKY 269
>gi|433450856|ref|ZP_20412712.1| pseudouridine synthase, RluA family protein [Mycoplasma sp. G5847]
gi|431933803|gb|ELK20362.1| pseudouridine synthase, RluA family protein [Mycoplasma sp. G5847]
Length = 310
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 99/187 (52%), Gaps = 14/187 (7%)
Query: 141 DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLD 193
D+ I+ ++ D+L + K ++ VHP NT+V +L ++ +L+ L P VHR+D
Sbjct: 82 DLDIIYQDDDLLVINKQNNITVHPSLNNTNNTIVNALLASDVELSSINGELRPGIVHRID 141
Query: 194 RLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRS 253
+ +GLLI+A+N L + + ++ K Y+A V+GV + ++D A GRS
Sbjct: 142 KQTTGLLIVAKNDKTHKLLSEMFKNHQIYKEYLAIVSGVIKPNKGLID------APIGRS 195
Query: 254 TAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
+ + T K A T F + +++V C+ TGRTHQIRVH Y +P+ ND
Sbjct: 196 AIDRK-KMSVTAKNSKQAITSFEVVERFLQNTLVKCQIQTGRTHQIRVHFNYINHPVLND 254
Query: 314 MLYLCEH 320
+Y +H
Sbjct: 255 PIYGKKH 261
>gi|387927105|ref|ZP_10129784.1| Pseudouridylate synthase, 23S RNA-specific [Bacillus methanolicus
PB1]
gi|387589249|gb|EIJ81569.1| Pseudouridylate synthase, 23S RNA-specific [Bacillus methanolicus
PB1]
Length = 303
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 118/249 (47%), Gaps = 22/249 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHE-----PPVMAWDVSILQKEPDVLTVCK 156
+K G+I V+ + V +Y + +I F+ E P M D I ++ DVL V K
Sbjct: 37 IKDGQILVNGQKVKTNYKCSLNDQIEIFIPEPEELDVIPEEMNLD--IYYEDHDVLVVNK 94
Query: 157 PPSVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V G++ DL+ L P VHR+D+ SGLL++A+N
Sbjct: 95 PKGMVVHPAPGHSSGTLVNGLMAHCKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDFSH 154
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ Q+ V ++Y A V+GV P +D + + +S A + GK
Sbjct: 155 ESLVNQLVDKTVTRKYKAIVHGVIPHDYGTIDAPLGRDPKDRQSMAVVDN--------GK 206
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSA 329
A T F + + + C+ TGRTHQIRVH++Y GYP+A D Y + +G +
Sbjct: 207 HAVTHFHVLERFKDFTFIECQLETGRTHQIRVHMKYIGYPLAGDPKYGPKKTLDIDGQAL 266
Query: 330 DRAAAYSHH 338
A HH
Sbjct: 267 HAAVLGFHH 275
>gi|365853555|ref|ZP_09393822.1| pseudouridine synthase, RluA family [Lactobacillus parafarraginis
F0439]
gi|363712180|gb|EHL95879.1| pseudouridine synthase, RluA family [Lactobacillus parafarraginis
F0439]
Length = 303
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 95/181 (52%), Gaps = 14/181 (7%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL------FPVHRLDRL 195
+ I+ ++ DV+ V KP + VHP + +T+V L L+ + VHR+D+
Sbjct: 77 LDIVYEDNDVIVVNKPQGMVVHPSAGHPDHTLVNALLYHSPLSSINGEYRPGIVHRVDKD 136
Query: 196 VSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTA 255
SGLL++A+N Q++A K +++Y+A V+GV E V++ I + + A
Sbjct: 137 TSGLLMVAKNNQAHQELSTQLKAQKNLRQYVALVHGVIKEDSGVINAPIGRSPRDRKKQA 196
Query: 256 ESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
D G+ A T FT + +++V C TGRTHQIRVH+QY G+P+ D L
Sbjct: 197 IVAD--------GRPAITHFTVVERFKHYTLVNCRLETGRTHQIRVHMQYIGHPLVGDPL 248
Query: 316 Y 316
Y
Sbjct: 249 Y 249
>gi|259046729|ref|ZP_05737130.1| ribosomal large subunit pseudouridine synthase D [Granulicatella
adiacens ATCC 49175]
gi|259036625|gb|EEW37880.1| ribosomal large subunit pseudouridine synthase D [Granulicatella
adiacens ATCC 49175]
Length = 308
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 117/267 (43%), Gaps = 60/267 (22%)
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLT------ 153
S +K G I V+ E+V +Y +S +V+ILQKE DV+T
Sbjct: 35 SWLKAGLISVNGEVVKSNYKAQSGD----------------EVTILQKEEDVITIQPENI 78
Query: 154 -------------VCKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPLFP--------VHR 191
V KP + VHP G Y V +L + L+ VHR
Sbjct: 79 PLDIVFEDDSLIVVNKPSGMVVHPSKGHYSGTLVNALLYHSNSLSDSTSEEIYRPGLVHR 138
Query: 192 LDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNIN-YNASA 250
+D+ SGLL++A+N +QI K+ + YIA V+G F VVD ++ + +
Sbjct: 139 IDKDTSGLLVIAKNNDVHQKLAEQIAENKMNREYIAIVDGHFAHETGVVDAPLSRHQTNR 198
Query: 251 GRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPI 310
+ E G GK A T F + + +S+V C TGRTHQIR H+++ +PI
Sbjct: 199 LKRVVEKG---------GKNAITHFEVLDSFSDYSLVSCRLETGRTHQIRAHMEFIKHPI 249
Query: 311 ANDMLYLCEHVTHREGMSADRAAAYSH 337
ND LY H +G +A + H
Sbjct: 250 VNDPLY------HPKGKNATEFGQFLH 270
>gi|390946631|ref|YP_006410391.1| RluA family pseudouridine synthase [Alistipes finegoldii DSM 17242]
gi|390423200|gb|AFL77706.1| pseudouridine synthase, RluA family [Alistipes finegoldii DSM
17242]
Length = 362
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 107/230 (46%), Gaps = 19/230 (8%)
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLH--RHEPPVMAWDV--SILQKEPDVLTVC 155
+A CG I V+ + SY VK +I L R E ++ D+ I ++ D+L V
Sbjct: 63 AAADCGSILVNGKAAKSSYKVKPLDRIQIVLPYPRREVEIIPEDIPLEIPYEDDDLLIVN 122
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP--------VHRLDRLVSGLLILARNAS 207
KP + VHP T+V L PLF VHR+D+ SGLL++A+N
Sbjct: 123 KPAGLVVHPGHGNYSGTLVNALTYHLRNLPLFQEGDMRAGLVHRIDKNTSGLLVVAKNEQ 182
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSL-GDTPL 266
+Q + +RY+A V G F E E + NI GRS + +
Sbjct: 183 SHARLAKQFFDHTIGRRYVALVWGNFEEDEGTITGNI------GRSPRDRQKMFVFEDGS 236
Query: 267 KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T + + G ++V C TGRTHQIRVH+ + G+P+ ND Y
Sbjct: 237 DGKHAVTHWRVLKRYGYVTLVECRLETGRTHQIRVHMSWQGHPLFNDERY 286
>gi|450161554|ref|ZP_21880555.1| putative pseudouridylate synthase [Streptococcus mutans 66-2A]
gi|449238509|gb|EMC37270.1| putative pseudouridylate synthase [Streptococcus mutans 66-2A]
Length = 296
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-------VSILQKEPDVLTV 154
+K G + V+ +M Y VK +H P D + I+ ++ DV +
Sbjct: 31 IKAGLVWVNGKMQKAKYAVKEGD----IIHYERPQEKVLDCVAQNIPLEIVYEDEDVAVI 86
Query: 155 CKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V +L DL+ + VHR+D+ SGLL++A+N
Sbjct: 87 NKPQGMVVHPSVGHPSGTLVNALLFHIKDLSSINGVIRPGIVHRIDKDTSGLLMIAKNDQ 146
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
++++ K +++YIA V+G P V++ A GRS E K
Sbjct: 147 AHQALAKELKEKKSLRQYIALVHGNLPNDRGVIE------APIGRS--EKDRKKQTVTAK 198
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + G +S+V TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 199 GKPAVTHFKVLERFGQYSLVELTLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|407003108|gb|EKE19731.1| hypothetical protein ACD_8C00118G0003 [uncultured bacterium]
Length = 315
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 125/262 (47%), Gaps = 22/262 (8%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKI--SHFL 130
+ + AG+ I A EF + +K G + V+ + + SY+++ + +F
Sbjct: 6 ITEKDAGERIDRFLAREFFLYSRADIIKRIKKGDVLVNNKEIKPSYSLEEGNAVMLENFS 65
Query: 131 HRHEPPVMAWDVSILQK----EPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE------ 180
E + + IL + D++ + K + VHP +K+T+V L A+
Sbjct: 66 REEEDKSLFVNNDILLEVVFENDDMVVINKQAGLQVHPSFNEKKDTLVNALLAKYPEILD 125
Query: 181 -HDL---APLFP--VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFP 234
HD A P VHRLD+ SGL+++ARN + + + +V K+Y+A G+F
Sbjct: 126 VHDESVGAENRPGIVHRLDKDTSGLIVVARNGKAFNALKANFKNREVEKKYLAITKGIFK 185
Query: 235 EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITG 294
E E V++ I ++S + + +T + A T F + G +S+V P TG
Sbjct: 186 EKEGVIEKAIAKSSSYRKQVI----ARNNTKTIIREAVTNFRVVEECGDYSMVEVLPKTG 241
Query: 295 RTHQIRVHLQYTGYPIANDMLY 316
RTHQIR+HL G+PI D++Y
Sbjct: 242 RTHQIRIHLASIGHPIVGDVVY 263
>gi|309803986|ref|ZP_07698068.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
11V1-d]
gi|309807269|ref|ZP_07701239.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
03V1-b]
gi|309809874|ref|ZP_07703724.1| pseudouridine synthase, RluA family [Lactobacillus iners SPIN
2503V10-D]
gi|312871741|ref|ZP_07731829.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
3008A-a]
gi|312874168|ref|ZP_07734202.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2052A-d]
gi|312875676|ref|ZP_07735677.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2053A-b]
gi|315653539|ref|ZP_07906459.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners ATCC 55195]
gi|325912067|ref|ZP_08174465.1| pseudouridine synthase, RluA family [Lactobacillus iners UPII
143-D]
gi|329920256|ref|ZP_08277040.1| pseudouridine synthase, RluA family [Lactobacillus iners SPIN
1401G]
gi|349611433|ref|ZP_08890668.1| hypothetical protein HMPREF1027_00095 [Lactobacillus sp. 7_1_47FAA]
gi|308163905|gb|EFO66170.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
11V1-d]
gi|308166329|gb|EFO68538.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
03V1-b]
gi|308169826|gb|EFO71869.1| pseudouridine synthase, RluA family [Lactobacillus iners SPIN
2503V10-D]
gi|311088930|gb|EFQ47373.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2053A-b]
gi|311090238|gb|EFQ48648.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2052A-d]
gi|311092683|gb|EFQ51039.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
3008A-a]
gi|315488901|gb|EFU78543.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners ATCC 55195]
gi|325476017|gb|EGC79185.1| pseudouridine synthase, RluA family [Lactobacillus iners UPII
143-D]
gi|328936301|gb|EGG32749.1| pseudouridine synthase, RluA family [Lactobacillus iners SPIN
1401G]
gi|348608526|gb|EGY58506.1| hypothetical protein HMPREF1027_00095 [Lactobacillus sp. 7_1_47FAA]
Length = 311
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 20/226 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA---WDVSILQKEPDVLTVCKPP 158
+K I + +SY V ++ KI+ + +P + ++ I+ ++ DV+ V KP
Sbjct: 40 IKQKLITTNGLQTKLSYKVNTNDKINIEIPYPQPLSLDPENLNLDIIYEDDDVIVVNKPQ 99
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAP---LF---PVHRLDRLVSGLLILARNASKADL 211
+ VHP + +T+V G++ +LA +F VHR+D+ SGLL++A+NA+
Sbjct: 100 GMVVHPSAGHPDHTLVNGLIYHTKNLAKCDEIFRPGIVHRIDKDTSGLLMIAKNATARIS 159
Query: 212 FRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKA 270
+Q+ A K+ KR YIA V+ F V+D I N + A GK
Sbjct: 160 LEKQL-ANKINKREYIAIVHDNFKHSSGVIDAPIGRNPYQRQQMAVVAS--------GKK 210
Query: 271 ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T FT + +S+V C TGRTHQIRVH+ Y G+PIA D LY
Sbjct: 211 AITHFTVLEQFPGYSLVKCVLETGRTHQIRVHMSYIGHPIAGDPLY 256
>gi|450064110|ref|ZP_21845273.1| putative pseudouridylate synthase [Streptococcus mutans NLML5]
gi|449203989|gb|EMC04816.1| putative pseudouridylate synthase [Streptococcus mutans NLML5]
Length = 296
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-------VSILQKEPDVLTV 154
+K G + V+ +M Y VK +H P D + I+ ++ DV +
Sbjct: 31 IKAGLVWVNGKMQKAKYAVKEGD----IIHYERPQEEVLDCVAQNIPLEIVYEDEDVAVI 86
Query: 155 CKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V +L DL+ + VHR+D+ SGLL++A+N
Sbjct: 87 NKPQGMVVHPSVGHPSGTLVNALLFHIKDLSSINGVIRPGIVHRIDKDTSGLLMIAKNDQ 146
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
++++ K +++YIA V+G P V++ A GRS E K
Sbjct: 147 AHQALAKELKEKKSLRQYIALVHGNLPNDRGVIE------APIGRS--EKDRKKQTVTAK 198
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + G +S+V TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 199 GKPAVTHFKVLERFGQYSLVELTLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|409398216|ref|ZP_11249037.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
Chol1]
gi|409117349|gb|EKM93783.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
Chol1]
Length = 317
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 116/256 (45%), Gaps = 17/256 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + + +G P ++ G ++V++ V Y +++ + R
Sbjct: 21 AGQRIDNFLRTQLRGVPKTLIYRILRKGEVRVNKGRVKPEYKLQAGDLVRVPPLRLAERD 80
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ + KP + VH + + Q D L
Sbjct: 81 EPEPLAQGLLERLEAAIVYEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQLRPDAKELE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SGLL++A+ S Q + V KRY+A V G + ++ V + N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHQALRGDGVDKRYMALVRGRWETSKKQVSAPLLKN 200
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQYT 306
T SG+ + + GK A T F + G ++V P+TGRTHQIRVH ++
Sbjct: 201 ------TLRSGERMVEVTEDGKEALTLFRVLRRFGDFATLVEARPVTGRTHQIRVHARHA 254
Query: 307 GYPIANDMLYLCEHVT 322
G+ IA D Y E T
Sbjct: 255 GHSIAGDSKYGDEEFT 270
>gi|450107248|ref|ZP_21860934.1| putative pseudouridylate synthase [Streptococcus mutans SF14]
gi|449222126|gb|EMC21862.1| putative pseudouridylate synthase [Streptococcus mutans SF14]
Length = 296
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-------VSILQKEPDVLTV 154
+K G + V+ +M Y VK +H P D + I+ ++ DV +
Sbjct: 31 IKAGLVWVNGKMQKAKYAVKEGD----IIHYERPQEEVLDCVAQNIPLEIVYEDEDVAVI 86
Query: 155 CKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V +L DL+ + VHR+D+ SGLL++A+N
Sbjct: 87 NKPQGMVVHPSVGHPSGTLVNALLFHIKDLSSINGVIRQGIVHRIDKDTSGLLMIAKNDQ 146
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
++++ K +++YIA V+G P V++ A GRS E K
Sbjct: 147 AHQALAKELKEKKSLRQYIALVHGNLPNDRGVIE------APIGRS--EKDRKKQTVTAK 198
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + G +S+V TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 199 GKPAVTHFKVLERFGQYSLVELTLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|408411254|ref|ZP_11182423.1| Pseudouridine synthase [Lactobacillus sp. 66c]
gi|407874547|emb|CCK84229.1| Pseudouridine synthase [Lactobacillus sp. 66c]
Length = 302
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 18/224 (8%)
Query: 103 KCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD---VSILQKEPDVLTVCKPPS 159
+ G++ V+ + VSY V++ +I + EP + + + I+ ++ DV+ V KP
Sbjct: 36 QAGQVLVNGKKAKVSYKVEAGDQIEVNILPLEPLDLEPENIPLDIVYEDDDVIVVNKPQG 95
Query: 160 VPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADLF 212
+ VHP + +T+V +L DLA P VHR+D+ SGLL++A+NA +
Sbjct: 96 MVVHPAAGHPNHTLVNALLYHTRDLADSPEGFRPGIVHRIDKDTSGLLMVAKNAKARESL 155
Query: 213 RQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAAC 272
Q+ + Y++ V+G F E VD I N + A + GK A
Sbjct: 156 EAQLAQKSNKRIYLSIVHGNFAEKSGTVDAPIARNPRDRKQMAVVEN--------GKNAV 207
Query: 273 TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + +S++ C+ TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 208 THFKVLEQYPGYSLIECQLETGRTHQIRVHMAYIGHPLAGDPLY 251
>gi|150015406|ref|YP_001307660.1| RluA family pseudouridine synthase [Clostridium beijerinckii NCIMB
8052]
gi|149901871|gb|ABR32704.1| pseudouridine synthase, RluA family [Clostridium beijerinckii NCIMB
8052]
Length = 299
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 13/224 (5%)
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA---WDVSILQKEPDVLTVCK 156
SA RI V++E+V ++ + + I L + E +A D+ I+ ++ D+L V K
Sbjct: 34 SASLGKRIFVNDEVVKMNRVLNEGEIIKIDLAKDESQDIAPEKMDIDIVYEDEDILVVNK 93
Query: 157 PPSVPVHPCGQYRKNT----VVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLF 212
P + VHP Y+ T V+ + V RLD SGL+I+A+N +
Sbjct: 94 KPFMVVHPTKSYQSGTLANGVINYFMESGQNCIVRLVSRLDMNTSGLIIIAKNQFSHGML 153
Query: 213 RQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAAC 272
+++ KV K+Y+A V+G+ E + +D+ I D +G+ +
Sbjct: 154 SKEMSENKVEKKYLALVHGIMKEKQGTIDLPIYKPEGIENGIRRVVDE------RGQRSI 207
Query: 273 TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T + + S+V C+ TGRTHQIRVHL + G+PI D LY
Sbjct: 208 THYKVVEEYNESSLVECKLETGRTHQIRVHLSHLGHPIYGDTLY 251
>gi|422860241|ref|ZP_16906885.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK330]
gi|327470139|gb|EGF15603.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK330]
Length = 298
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 111/225 (49%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMAWDV--SILQKEPDVLTVCKPP 158
+K G I V+ + Y VK IS+ L E +A D+ I+ ++ DV V KP
Sbjct: 33 IKDGLILVNGQAKKAKYAVKEGDVISYELPESEVVEYVAEDIPLEIVYQDEDVAVVNKPQ 92
Query: 159 SVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 93 GMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAHVA 152
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+++ K +++Y A V+G P V++ I + + A + KGK A
Sbjct: 153 LADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGKPA 204
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+F + G S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 205 LTRFQVLERFGDFSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|386362494|ref|YP_006071825.1| pseudouridine synthase, RluA family protein [Streptococcus pyogenes
Alab49]
gi|350276903|gb|AEQ24271.1| pseudouridine synthase, RluA family protein [Streptococcus pyogenes
Alab49]
Length = 296
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMAWDVSI-LQKEPDVLTVC-KPP 158
+K G + V+ + YTV++ I L + E A D+ + + E D L + KP
Sbjct: 31 IKQGLVLVNGQQKKAKYTVQAGDVICFELPKEEVLEYQAQDIPLDIIYEDDALAIINKPQ 90
Query: 159 SVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V L DL+ + VHR+D+ SGLL++A+ +
Sbjct: 91 GMVVHPSAGHPSGTMVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKTDAAHQA 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
++++A K +++Y+A V+G P +++ I + + A + KGK A
Sbjct: 151 LAEELKAKKSLRKYLAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGKEA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+FT + G +S+V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 203 VTRFTVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|228998673|ref|ZP_04158260.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
Rock3-17]
gi|228761141|gb|EEM10100.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
Rock3-17]
Length = 302
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 113/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFL-HRHEPPVMAWDVS--ILQKEPDVLTVCKPP 158
+K G + V+ + +Y VK + +I+ + E ++ D++ I ++ DVL V KP
Sbjct: 38 IKDGVVTVNGNAIKGNYKVKVNDEIAVAIPDPEELDILPEDMNLEIYYEDADVLVVNKPR 97
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V G++ DL+ + VHR+D+ SGLL++A+N +
Sbjct: 98 GMVVHPAPGHTSGTLVNGLMHHCTDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDMAHES 157
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q+ A V +RY A V+GV P + +D A GR + D GK A
Sbjct: 158 LVNQLVAKTVTRRYKAIVHGVIPHDKGTID------APIGRDKKDRQSMTVDE--NGKHA 209
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + ++V C TGRTHQIRVH++Y GYP+A D Y
Sbjct: 210 VTHFQVLERFKDFTLVECRLETGRTHQIRVHMKYIGYPLAGDPKY 254
>gi|392331253|ref|ZP_10275868.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
canis FSL Z3-227]
gi|391418932|gb|EIQ81744.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
canis FSL Z3-227]
Length = 297
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMAWDV--SILQKEPDVLTVCKPP 158
+K G + V+ + YTV++ I L + E A D+ ++ ++ + + KP
Sbjct: 31 IKQGLVWVNGQQKKAKYTVQAGDVICFELPKEEVLEYQAQDIPLDVIYEDEALAIINKPQ 90
Query: 159 SVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V L DL+ + VHR+D+ SGLL++A+
Sbjct: 91 GMVVHPSAGHPSGTLVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKTDVAHQA 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
++++A K +++Y+A V+G P +++ AS GRS E KGK A
Sbjct: 151 LAEELKAKKSLRKYLAIVHGNLPNDRGLIE------ASIGRS--EKDRKKQAVTAKGKEA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+FT + G +S+V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 203 VTRFTVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|339010987|ref|ZP_08643555.1| pseudouridine synthase [Brevibacillus laterosporus LMG 15441]
gi|338771975|gb|EGP31510.1| pseudouridine synthase [Brevibacillus laterosporus LMG 15441]
Length = 297
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 124/254 (48%), Gaps = 20/254 (7%)
Query: 72 HVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFL- 130
H + AG+++ ++ ++++ + A G IQ++ E+ V+ V++ I+ ++
Sbjct: 9 HASEQQAGRSLREVLQKDYEI-SRKLLIRAKFSGEIQINGELAFVTRIVEAGDIITIWMD 67
Query: 131 --HRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQY----RKNTVVGILQAEHDLA 184
A D+ I ++ DVL + KPP + VHP G + N V+ Q + +
Sbjct: 68 EEESENLEPEAMDLQIRYEDEDVLVLAKPPGIVVHPTGMHVTGTLANGVIHYWQQKGERR 127
Query: 185 PLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI 244
PV RLD+ +GL+I+A+N D F + + + +RY A V+G V+D
Sbjct: 128 KFRPVSRLDKDTTGLIIIAKNQWAHDRFSRMQKNRSLKRRYQALVHGRVTPQSGVID--- 184
Query: 245 NYNASAGRSTAESGDSLGDTPLK--GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVH 302
A GR +S+ + ++ G+ A T + + + S + + TGRTHQIRVH
Sbjct: 185 ---APIGRKE----ESIIEREVRPDGQQAVTHYQVLKSTDDLSHIQLQLETGRTHQIRVH 237
Query: 303 LQYTGYPIANDMLY 316
+ Y GYP+ D LY
Sbjct: 238 MSYLGYPLLGDDLY 251
>gi|336236130|ref|YP_004588746.1| RluA family pseudouridine synthase [Geobacillus thermoglucosidasius
C56-YS93]
gi|423720663|ref|ZP_17694845.1| pseudouridine synthase, rluA family [Geobacillus thermoglucosidans
TNO-09.020]
gi|335362985|gb|AEH48665.1| pseudouridine synthase, RluA family [Geobacillus
thermoglucosidasius C56-YS93]
gi|383366016|gb|EID43307.1| pseudouridine synthase, rluA family [Geobacillus thermoglucosidans
TNO-09.020]
Length = 304
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 94/182 (51%), Gaps = 14/182 (7%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE-HDLA----PLFP--VHRLDR 194
+ I ++ DVL V KP + VHP + + T+V L A HDL+ L P VHR+D+
Sbjct: 80 LDIYYEDADVLVVNKPRGMVVHPAPGHMRGTLVNALLAHCHDLSGINGVLRPGIVHRIDK 139
Query: 195 LVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRST 254
SGLL++A+N Q+ V ++Y A V+GV P +D I + +
Sbjct: 140 DTSGLLMVAKNDMAHQALVDQLVKKTVTRKYKAIVHGVIPHDYGTIDAPIGRDKRDRKKM 199
Query: 255 AESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDM 314
A + ++ GK A T F + ++ + C+ TGRTHQIRVH++Y GYP+A D
Sbjct: 200 AVTEEN-------GKEAVTHFRVLERFRQYTFIECQLETGRTHQIRVHMKYIGYPLAGDP 252
Query: 315 LY 316
Y
Sbjct: 253 QY 254
>gi|288905537|ref|YP_003430759.1| ribosomal large subunit pseudouridine synthase [Streptococcus
gallolyticus UCN34]
gi|386337983|ref|YP_006034152.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
gi|288732263|emb|CBI13830.1| putative ribosomal large subunit pseudouridine synthase
[Streptococcus gallolyticus UCN34]
gi|334280619|dbj|BAK28193.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
Length = 298
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ + V Y VK +++ + + E V+ + + I+ ++ DV V K
Sbjct: 31 IKKGTVLVNGKAVKAKYAVKVGDVVTYEVPKEE--VLEYTAENIPLDIIYEDDDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHPSVGHMSGTLVNALMYHIKDLSSINGVIRPGIVHRIDKDTSGLLMIAKNDKAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ +++ K +++Y+A V+G P V++ A GRS E KGK
Sbjct: 149 NALAAELKDKKSLRKYVAIVHGNIPNDRGVIE------APIGRS--EKDRKKQAVTAKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F + G +++V TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 201 PAVTHFKVLERFGNYTLVELTLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|392402939|ref|YP_006439551.1| pseudouridine synthase, RluA family [Turneriella parva DSM 21527]
gi|390610893|gb|AFM12045.1| pseudouridine synthase, RluA family [Turneriella parva DSM 21527]
Length = 316
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 2/186 (1%)
Query: 132 RHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHR 191
R EP V A +++ + ++ + L V KPP +PVHP G Y++ T+ +L L P+HR
Sbjct: 70 RDEPEVNA-EIATIAEDENFLVVNKPPGLPVHPSGIYKEQTLTALLVKRGILETPHPLHR 128
Query: 192 LDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASA- 250
LDR SG+LI+A+N A +F++ + +G++ K+Y+ V G + E S
Sbjct: 129 LDRETSGVLIMAKNRKAAAVFQKTLRSGEIDKQYLVAVEGTWAETIDATGFLYRLPGSLL 188
Query: 251 GRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPI 310
R S + + + + T F S+V + TGR HQIR + GYP+
Sbjct: 189 PRQRFFSYEHPAAEATEVQTSRTVFEPFRQAPGMSLVRAKLYTGRMHQIRATVHSLGYPV 248
Query: 311 ANDMLY 316
D LY
Sbjct: 249 VGDKLY 254
>gi|451343617|ref|ZP_21912688.1| RluA family pseudouridine synthase [Eggerthia catenaformis OT 569 =
DSM 20559]
gi|449337714|gb|EMD16871.1| RluA family pseudouridine synthase [Eggerthia catenaformis OT 569 =
DSM 20559]
Length = 302
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 91/182 (50%), Gaps = 14/182 (7%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDR 194
+ I+ ++ DV+ V KP + VHP G Y V +L HDL+ + VHR+D+
Sbjct: 80 LDIVYEDKDVIVVNKPSGMIVHPSSGIYSGTLVNALLYHCHDLSAINGVTRPGIVHRIDK 139
Query: 195 LVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRST 254
SGL++ A+N +Q+E VI+RYIA V+G P + + A GR
Sbjct: 140 ETSGLIMAAKNDLSHQSLSKQLEEHTVIRRYIALVHGEIPHTKGRI------VAPIGRDQ 193
Query: 255 AESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDM 314
+ + T GK A T FT + ++V C TGRTHQIRVH+ Y GYP+ D
Sbjct: 194 RDR-QKMNVTSHNGKEAITNFTVLERFKNMTLVECRLETGRTHQIRVHMNYIGYPVYGDP 252
Query: 315 LY 316
Y
Sbjct: 253 KY 254
>gi|312111747|ref|YP_003990063.1| pseudouridine synthase [Geobacillus sp. Y4.1MC1]
gi|311216848|gb|ADP75452.1| pseudouridine synthase, RluA family [Geobacillus sp. Y4.1MC1]
Length = 304
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 94/182 (51%), Gaps = 14/182 (7%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE-HDLA----PLFP--VHRLDR 194
+ I ++ DVL V KP + VHP + + T+V L A HDL+ L P VHR+D+
Sbjct: 80 LDIYYEDADVLVVNKPRGMVVHPAPGHMRGTLVNALLAHCHDLSGINGVLRPGIVHRIDK 139
Query: 195 LVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRST 254
SGLL++A+N Q+ V ++Y A V+GV P +D I + +
Sbjct: 140 DTSGLLMVAKNDMAHQALVDQLVKKTVTRKYKAIVHGVIPHDYGTIDAPIGRDKRDRKKM 199
Query: 255 AESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDM 314
A + ++ GK A T F + ++ + C+ TGRTHQIRVH++Y GYP+A D
Sbjct: 200 AVTEEN-------GKEAVTHFRVLERFRQYTFIECQLETGRTHQIRVHMKYIGYPLAGDP 252
Query: 315 LY 316
Y
Sbjct: 253 QY 254
>gi|407004108|gb|EKE20558.1| hypothetical protein ACD_7C00527G0001 [uncultured bacterium]
Length = 322
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 130/281 (46%), Gaps = 31/281 (11%)
Query: 73 VKNRWAGKTIVDLFA------EEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKI 126
++ R+A + + + A E G ++ A+K G++ V+ ++V SY KI
Sbjct: 5 IEERYANRRLDKILANFSLTEESLTGLSRGDFIRAIKEGKVLVNNKIVKPSYKTALDDKI 64
Query: 127 SHFLHRHEPPVMA---WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH-D 182
L + E +++ + ++ + D L + KP VHP ++NT+V L A++ +
Sbjct: 65 EINLVKKEETLISNPKIKLDVIFENDDFLIINKPAGTQVHPDFNEKENTIVNGLIAQYPE 124
Query: 183 LAPLFP------------VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
+A L VHRLD+ SG+LI+A+N F+ + + K+Y+A
Sbjct: 125 IAKLKDDHTYSFQLRPGIVHRLDKETSGILIIAKNIKSFLEFKTMFKEKTIAKKYLAISY 184
Query: 231 GVFPEGEQVVDVNINYNASAGRSTAESGDSLGD--TPLKGKAACTKFTRISTNGTH-SIV 287
G+ E +D R+T ++ T K + A T + I G + S++
Sbjct: 185 GIPLERTGAID------KPLARTTNYRKQTIAGKRTKTKIREALTNYEVIKDLGENFSLI 238
Query: 288 LCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMS 328
P TGRTHQIRVHL G+PI D LY ++ EG +
Sbjct: 239 EVSPQTGRTHQIRVHLSAIGHPIVGDNLYRKKNYEKFEGAT 279
>gi|424847927|ref|ZP_18272469.1| pseudouridine synthase, RluA family [Enterococcus faecium R501]
gi|402918671|gb|EJX39338.1| pseudouridine synthase, RluA family [Enterococcus faecium R501]
Length = 303
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 114/229 (49%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + V+ + V +Y VK +I+ + P DV +I+ ++ DV V
Sbjct: 35 LKNGAVSVNGQPVKANYKVKQGDEITVLI----PEPETLDVVPENIPLTIVYEDEDVAVV 90
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 91 NKPQGMVVHPSAGHTHGTMVNALMYHIKDLSTINGVIRPGIVHRIDKDTSGLLMVAKNDQ 150
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ QQ++ +++Y+A V+G P + + NA GRS + +
Sbjct: 151 AHESLAQQLKDKTSLRKYVALVHGEIPHEKGTI------NAPIGRS--KENRKMQAIRED 202
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK+A T FT + ++V + TGRTHQIRVH++Y GYP+A D +Y
Sbjct: 203 GKSAVTHFTVLERFEGFTLVELKLETGRTHQIRVHMKYIGYPLAGDPVY 251
>gi|42561113|ref|NP_975564.1| ribosomal large subunit pseudouridylate synthase D [Mycoplasma
mycoides subsp. mycoides SC str. PG1]
gi|42492610|emb|CAE77206.1| ribosomal large subunit pseudouridylate synthase D [Mycoplasma
mycoides subsp. mycoides SC str. PG1]
gi|301320622|gb|ADK69265.1| pseudouridine synthase, RluA family [Mycoplasma mycoides subsp.
mycoides SC str. Gladysdale]
Length = 310
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 14/187 (7%)
Query: 141 DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLD 193
D+ I+ ++ D+L + K ++ VHP NT+V +L ++ +L+ L P VHR+D
Sbjct: 82 DLDIIYQDDDLLVINKQNNITVHPSLNNTNNTIVNALLASDVELSSINGELRPGIVHRID 141
Query: 194 RLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRS 253
+ +GLLI+A+N L + + ++ K Y+A V GV + ++D A GRS
Sbjct: 142 KQTTGLLIVAKNDKTHKLLSEMFKNHQIYKEYLAIVTGVIKPNKGLID------APIGRS 195
Query: 254 TAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
+ + T K A T F + +++V C+ TGRTHQIRVH Y +P+ ND
Sbjct: 196 QTDRK-KMSVTAKNSKQAITTFEVVERFFKNTLVKCQIQTGRTHQIRVHFNYINHPVLND 254
Query: 314 MLYLCEH 320
+Y +H
Sbjct: 255 PVYGKKH 261
>gi|262282338|ref|ZP_06060106.1| pseudouridine synthase [Streptococcus sp. 2_1_36FAA]
gi|262261629|gb|EEY80327.1| pseudouridine synthase [Streptococcus sp. 2_1_36FAA]
Length = 296
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD---VSILQKEPDVLTVCKPP 158
+K G+I V+ + YTVK IS+ L E + + I+ ++ DV V KP
Sbjct: 31 IKTGKILVNGLVKKAKYTVKEGDVISYELPEVEEVEYVPEDIPLEIVYQDEDVAVVNKPQ 90
Query: 159 SVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 GMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAHVA 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+++ K +++Y A V+G P V++ I + + A + KGK+A
Sbjct: 151 LADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGKSA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 LTRFQVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|299821727|ref|ZP_07053615.1| ribosomal large subunit pseudouridine synthase [Listeria grayi DSM
20601]
gi|299817392|gb|EFI84628.1| ribosomal large subunit pseudouridine synthase [Listeria grayi DSM
20601]
Length = 302
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 22/246 (8%)
Query: 83 VDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD- 141
+D F E + +K G++ VD E+V +Y + + + P V+ +
Sbjct: 17 IDKFLAEKASKSRSSVQQLLKDGQVTVDGEVVKPNYKCQLGDIVE--MEERAPEVIEIEA 74
Query: 142 ----VSILQKEPDVLTVCKPPSVPVHP-CGQYRKNTVVGILQAEHDLAPL------FPVH 190
+ I ++ D+L V KP + VHP G Y V +L DL+ + VH
Sbjct: 75 EDIPLDIYYEDEDLLVVNKPEGMVVHPSAGHYTGTLVNALLYHCKDLSGINGKIRPGIVH 134
Query: 191 RLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASA 250
R+D+ SGLL++A+N + + Q++A + Y+A V+G + ++ I
Sbjct: 135 RIDKDTSGLLMVAKNDAAHESLASQLKAKTSHREYVALVHGDIAHQKGTIEAPIGRAKDD 194
Query: 251 GRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPI 310
+ A GD GK A T F + G +++ C+ TGRTHQIRVHL+Y G+P+
Sbjct: 195 RQKMAVVGD--------GKEARTHFEVLERFGDFTLITCQLDTGRTHQIRVHLKYIGHPL 246
Query: 311 ANDMLY 316
A D Y
Sbjct: 247 AGDPKY 252
>gi|357238999|ref|ZP_09126335.1| pseudouridine synthase, RluA family [Streptococcus ictaluri 707-05]
gi|356752721|gb|EHI69846.1| pseudouridine synthase, RluA family [Streptococcus ictaluri 707-05]
Length = 299
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ + YTV+ KI++ + + E V+ + + I+ ++ + V K
Sbjct: 31 IKQGLVLVNGQAKKAKYTVQLGDKITYQIPQEE--VLEYKAEDIPLDIIYEDDALAIVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L +L+ + VHR+D+ SGLL++A+
Sbjct: 89 PQGMVVHPSAGHASGTMVNALMYHIKNLSSINGVVRPGIVHRIDKDTSGLLMVAKTDKAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
++++A K +++Y+A V+G P V++ I GRS + +KGK
Sbjct: 149 HHLAEELKAKKSLRKYLAIVHGNLPNDRGVIEAPI------GRSEKDRKKQA--VTVKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+FT + G ++++ + TGRTHQIRVH+ Y G+PIA D LY
Sbjct: 201 EALTRFTVLERFGDYTLLELQLETGRTHQIRVHMAYIGHPIAGDPLY 247
>gi|422858571|ref|ZP_16905221.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1057]
gi|327460457|gb|EGF06794.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1057]
Length = 298
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K RI V+ + Y VK IS+ L EP V+ + + I+ ++ DV V K
Sbjct: 33 IKDSRILVNGQAKKAKYAVKEGDVISYELP--EPEVVEYVAEDIPLEIVYQDEDVAVVNK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 151 VALADELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + +S+V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 203 PALTRFQVLERFADYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 249
>gi|152986000|ref|YP_001347558.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PA7]
gi|150961158|gb|ABR83183.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PA7]
Length = 318
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 18/251 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ + Y +++ ++ R
Sbjct: 21 AGQRIDNFLIARLKGAPKTLIYRILRKGEVRVNKGRIKPDYRLQAGDQVRVPPLRLAERD 80
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ V KP + VH + Q + +
Sbjct: 81 EPAPLAQGLLERMEAAIVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQLRPEARDIE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVI-KRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SGLL++A+ S + + K++ KRY A V G +P G++ N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHEALRGEKIVDKRYHALVRGHWPAGKK------NI 194
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
A ++ SG+ + + ++GK A T+F + G ++V PITGRTHQIRVH ++
Sbjct: 195 RAPLLKNNLRSGERMVEVNVEGKDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKH 254
Query: 306 TGYPIANDMLY 316
G+ IA D Y
Sbjct: 255 AGHAIAGDPKY 265
>gi|410494539|ref|YP_006904385.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
dysgalactiae subsp. equisimilis AC-2713]
gi|410439699|emb|CCI62327.1| K06180 ribosomal large subunit pseudouridine synthase D
[Streptococcus dysgalactiae subsp. equisimilis AC-2713]
Length = 297
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMAWDV--SILQKEPDVLTVCKPP 158
+K G + V+ + YTV++ I L + E A D+ +I+ ++ + + KP
Sbjct: 31 IKQGLVLVNGQQKKAKYTVQAGDVIQFELPKEEVLEYQAQDIPLNIIYEDEALAIINKPQ 90
Query: 159 SVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V L DL+ + VHR+D+ SGLL++A+ +
Sbjct: 91 GMVVHPSAGHPSGTMVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKTDAAHQA 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
++++A K +++Y+A V+G P +++ I GRS E KGK A
Sbjct: 151 LAEELKAKKSLRKYLAIVHGNLPNDRGMIEAPI------GRS--EKDRKKQAVIAKGKEA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+FT + G +S+V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 203 VTRFTVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|416401986|ref|ZP_11687314.1| putative pseudouridine synthase [Crocosphaera watsonii WH 0003]
gi|357261969|gb|EHJ11175.1| putative pseudouridine synthase [Crocosphaera watsonii WH 0003]
Length = 302
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 119/246 (48%), Gaps = 6/246 (2%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHR 132
+K AG T+++ + + + Y ++ + G++ VDE+ V +K+ Q++S+
Sbjct: 11 IKPNHAGLTLIEYYTKHYHHSNYQQWLERIISGQVLVDEQTVDPQTVLKTGQRLSYHRPP 70
Query: 133 HEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRL 192
+ P + I+ ++ ++L V KP +PV P G + ++T++ L+ ++ P+HRL
Sbjct: 71 WQEPEVPLSFEIIYEDDNLLIVNKPSGLPVLPGGGFLEHTLLWQLKKQYPQNEPIPIHRL 130
Query: 193 DRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGR 252
R SGL+++ ++A QQ+ K+ K Y + G+ + + + G+
Sbjct: 131 GRGTSGLMLMGKSAIARSHLTQQMREQKISKVYQGLI------GKNNLPDKFSIDHPIGK 184
Query: 253 STAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAN 312
+ + GK A ++ + +++ +TGR HQIR+HL GYP+
Sbjct: 185 IPDPVLGYIYGAKVDGKYAYSECRVLERYADKTLLEVTILTGRPHQIRIHLATIGYPLLG 244
Query: 313 DMLYLC 318
D LY+
Sbjct: 245 DPLYVV 250
>gi|335032000|ref|ZP_08525412.1| pseudouridine synthase, RluA family [Streptococcus anginosus SK52 =
DSM 20563]
gi|333768140|gb|EGL45343.1| pseudouridine synthase, RluA family [Streptococcus anginosus SK52 =
DSM 20563]
Length = 298
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G+I V+ ++ Y VK+ I++ L EP + + + I+ ++ DV V K
Sbjct: 31 IKNGQILVNGQVKKAKYAVKAGDVITYELS--EPEALEYVAENLPLDIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
+ VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 AQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
++++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 IKLAEELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|224541418|ref|ZP_03681957.1| hypothetical protein CATMIT_00580 [Catenibacterium mitsuokai DSM
15897]
gi|224525664|gb|EEF94769.1| pseudouridine synthase, RluA family [Catenibacterium mitsuokai DSM
15897]
Length = 306
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 27/230 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFL-HRHEPPVMAWDV--SILQKEPDVLTVCKPP 158
+K G++ V++ + +Y V+ I L + D+ I+ ++ DV+ V KP
Sbjct: 37 IKAGQVIVNDNVEKANYKVEEEDVIQVTLPDPQSTEIRPEDIPLDIIYEDEDVIVVNKPT 96
Query: 159 SVPVHP-CGQYRKNTVVGILQAEHDLAPLFP------VHRLDRLVSGLLILARNASKADL 211
+ VHP G Y V +L HDL+ + VHR+D+ SGLL++A+N +
Sbjct: 97 GMIVHPSAGIYSGTLVNALLYHCHDLSAINGITRPGIVHRIDKETSGLLMVAKNDNAHRS 156
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN-----ASAGRSTAESGDSLGDTPL 266
+Q+E V++RY+A V+GV IN+N A GR + + + T
Sbjct: 157 LSKQLEEHSVVRRYVALVHGV-----------INHNVGRIEAPIGRDSKDR-KKMAVTSK 204
Query: 267 KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T F + +++ C TGRTHQIRVH+QY G+P+ D Y
Sbjct: 205 NAKDAITNFKVLERYDDMTLIECRLETGRTHQIRVHMQYIGHPVYGDPQY 254
>gi|146306651|ref|YP_001187116.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
mendocina ymp]
gi|145574852|gb|ABP84384.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
mendocina ymp]
Length = 332
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 127/280 (45%), Gaps = 20/280 (7%)
Query: 77 WAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHR 132
+AG+ I + + KG P ++ G ++V++ + Y +++ + R
Sbjct: 35 FAGQRIDNFLRTQLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDIVRVPPLRLAER 94
Query: 133 HEPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
EP +A + +I+ ++ ++ + KP + VH + Q D L
Sbjct: 95 DEPEPVAQGLLERLEAAIVYEDKALIVLNKPAGIAVHGGSGLNYGVIEAFRQLRPDAKDL 154
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SGLL++A+ S + + V KRY+A V G + ++ V
Sbjct: 155 ELVHRLDRDTSGLLMIAKKRSMLRHLHEALRGDGVDKRYMALVRGHWATAKKQV------ 208
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
NA +S SG+ + + +GK A T F + G ++V +P+TGRTHQIRVH ++
Sbjct: 209 NAPLQKSNLRSGERMVEVDGEGKEALTLFRVLRRFGDFATLVEAKPVTGRTHQIRVHAKH 268
Query: 306 TGYPIANDMLYLCEHVTH--RE-GMSADRAAAYSHHSPPP 342
G+ IA D Y + T RE G AY H P P
Sbjct: 269 AGHCIAGDSKYGDDDFTREIRELGGKRLFLHAYELHVPLP 308
>gi|332686651|ref|YP_004456425.1| ribosomal large subunit pseudouridine synthase D [Melissococcus
plutonius ATCC 35311]
gi|332370660|dbj|BAK21616.1| ribosomal large subunit pseudouridine synthase D [Melissococcus
plutonius ATCC 35311]
Length = 302
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 124/244 (50%), Gaps = 22/244 (9%)
Query: 85 LFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD--- 141
+ +EE +K ++V+ ++V +Y V+ + ++ + +P +M
Sbjct: 19 VLSEELIAYSRSQIQQWLKDSLVRVNNKVVKANYKVQPADEV--IIQLPKPKMMVVSPEN 76
Query: 142 --VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPLFPV------HRL 192
+ I+ ++ DV+ + KP + VHP + K T+V +L DL+ + V HR+
Sbjct: 77 IPLDIVYEDQDVVVINKPQGMVVHPSAGHFKGTMVHALLYHIKDLSSINDVIRPGIVHRI 136
Query: 193 DRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGR 252
D+ SGLLI+A+N + +Q++ ++++YIA V+G P + +D I + + +
Sbjct: 137 DKDTSGLLIVAKNNQAHEALAKQLKDKTILRKYIALVHGEVPHEQGTIDAPIGRSKTNRK 196
Query: 253 STAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAN 312
A D G++A T F + ++++ + TGRTHQIRVH++Y G+P+A
Sbjct: 197 MQAIIKD--------GRSAVTHFKVLEKFTGYTLIELQLETGRTHQIRVHMKYIGHPVAG 248
Query: 313 DMLY 316
D +Y
Sbjct: 249 DPVY 252
>gi|229086457|ref|ZP_04218629.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-44]
gi|228696774|gb|EEL49587.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-44]
Length = 302
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 112/225 (49%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFL-HRHEPPVMAWDVS--ILQKEPDVLTVCKPP 158
+K G + V+ + +Y VK + +I+ + E + A D++ I ++ DVL V KP
Sbjct: 38 IKDGVVTVNGNDIKGNYKVKENDEIAVAIPEPEELDIRAEDMNLEIYYEDADVLVVNKPR 97
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V G++ DL+ + VHR+D+ SGLL++A+N +
Sbjct: 98 GMVVHPAPGHTSGTLVNGLMYHCTDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDMAHES 157
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q+ V +RY A V+GV P + +D A GR E D GK A
Sbjct: 158 LVNQLVEKTVTRRYKAIVHGVIPHDKGTID------APIGRDKKERQSMAVDE--NGKNA 209
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + ++V C TGRTHQIRVH++Y GYP+A D Y
Sbjct: 210 VTHFQVLERFKDFTLVECRLETGRTHQIRVHMKYIGYPLAGDPKY 254
>gi|403514918|ref|YP_006655738.1| pseudouridine synthase [Lactobacillus helveticus R0052]
gi|403080356|gb|AFR21934.1| Pseudouridine synthase [Lactobacillus helveticus R0052]
Length = 303
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 114/230 (49%), Gaps = 28/230 (12%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
VK I V+ ++ VSY +++ KI + P V DV I+ ++ DV+ V
Sbjct: 36 VKEKEILVNHKVEKVSYKIQAGDKIEINV----PAVKPLDVVPENIPLDIVYEDEDVIVV 91
Query: 155 CKPPSVPVHPCGQYRKNTVVG-ILQAEHDLAP----LFP--VHRLDRLVSGLLILARNAS 207
KP + VHP + +T+V +L DLA P VHR+D+ SGLL++A+NA
Sbjct: 92 NKPQGMVVHPAPGHPDHTLVNTLLYHTQDLAQSSEGFRPGIVHRIDKDTSGLLMIAKNAK 151
Query: 208 KADLFRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL 266
+ Q+ A K KR Y A V+G F E V+D I N + A +
Sbjct: 152 ARESLEDQL-AHKTNKRIYWAIVHGNFGEENGVIDAPIGRNPYDRKKMAVVEN------- 203
Query: 267 KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +S++ C+ TGRTHQIRVHL Y G+ +A D LY
Sbjct: 204 -GKKAVTHFKVLKQFKGYSLIECQLETGRTHQIRVHLDYIGHAVAGDPLY 252
>gi|418962916|ref|ZP_13514765.1| pseudouridine synthase, RluA family [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383344892|gb|EID23042.1| pseudouridine synthase, RluA family [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 298
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G+I V+ ++ Y VK+ I++ L EP + + + I+ ++ DV V K
Sbjct: 31 IKNGQILVNGQVKKAKYAVKAGDVITYELS--EPEALEYVAENLPLDIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
+ VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 AQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
++++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 IKLAEELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|21910093|ref|NP_664361.1| ribosomal large subunit pseudouridine synthase [Streptococcus
pyogenes MGAS315]
gi|28896209|ref|NP_802559.1| hypothetical protein SPs1297 [Streptococcus pyogenes SSI-1]
gi|71903284|ref|YP_280087.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes MGAS6180]
gi|94994123|ref|YP_602221.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes MGAS10750]
gi|383479819|ref|YP_005388713.1| Ribosomal large subunit pseudouridine synthase protein RluA
[Streptococcus pyogenes MGAS15252]
gi|383493736|ref|YP_005411412.1| Ribosomal large subunit pseudouridine synthase protein RluA
[Streptococcus pyogenes MGAS1882]
gi|21904284|gb|AAM79164.1| putative ribosomal large subunit pseudouridine synthase
[Streptococcus pyogenes MGAS315]
gi|28811460|dbj|BAC64392.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|71802379|gb|AAX71732.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes MGAS6180]
gi|94547631|gb|ABF37677.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes MGAS10750]
gi|378927809|gb|AFC66015.1| Ribosomal large subunit pseudouridine synthase protein RluA
[Streptococcus pyogenes MGAS15252]
gi|378929464|gb|AFC67881.1| Ribosomal large subunit pseudouridine synthase protein RluA
[Streptococcus pyogenes MGAS1882]
Length = 296
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ + YTV++ I L + E V+ + + I+ ++ + + K
Sbjct: 31 IKQGLVLVNGQQKKAKYTVQAGDVICFELPKEE--VLEYQAQNIPLDIIYEDDTLAIINK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ + VHR+D+ SGLL++A+ +
Sbjct: 89 PQGMVVHPSAGHPSGTMVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKTDAAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
++++A K +++Y+A V+G P +++ I + + A + KGK
Sbjct: 149 QALAEELKAKKSLRKYLAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+FT + G +S+V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 201 EAVTRFTVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|288553139|ref|YP_003425074.1| large ribosomal pseudouridine synthesis protein [Bacillus
pseudofirmus OF4]
gi|288544299|gb|ADC48182.1| large ribosomal pseudouridine synthesis protein [Bacillus
pseudofirmus OF4]
Length = 304
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 17/225 (7%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFL-HRHEPPVMAWDV--SILQKEPDVLTVCKPP 158
+K G++QV+ + +Y ++ +++ + E V+A D+ ++ ++ DV+ V KP
Sbjct: 37 IKDGQVQVNGKATKSNYKMQVEDQVTLSIPEPEELDVIAEDIPLDVVYEDADVIVVNKPR 96
Query: 159 SVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP G Y V +L DL+ + VHR+D+ SGLL++A+N +
Sbjct: 97 GMVVHPAPGHYTGTLVNALLYHCKDLSGINGVIRPGIVHRIDKDTSGLLMVAKNDHAHES 156
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q++A + Y A V+GV P ++ I + +S + D+ D A
Sbjct: 157 LVSQLKAKTTKRHYKAIVHGVIPHQHGTIEAPIGRDKKDRQSMTVTEDNSRD-------A 209
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T FT + + V CE TGRTHQIRVH++Y GYP+A D Y
Sbjct: 210 VTHFTVLECFKDFTYVQCELETGRTHQIRVHMKYIGYPLAGDPKY 254
>gi|196038675|ref|ZP_03105983.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus NVH0597-99]
gi|196030398|gb|EDX68997.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus NVH0597-99]
Length = 302
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 121/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV--KCGRIQVDE-----------EMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + + R QV + + V +Y V+ + +I+ +
Sbjct: 10 AEEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAVKGNYKVRENDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A VI+RY A V+GV P + +D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVIRRYKAIVHGVIPHDKGTID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A R E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIARDKKERQSMTVDE--NGKHAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|335040592|ref|ZP_08533718.1| pseudouridine synthase, RluA family [Caldalkalibacillus thermarum
TA2.A1]
gi|334179562|gb|EGL82201.1| pseudouridine synthase, RluA family [Caldalkalibacillus thermarum
TA2.A1]
Length = 302
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 118/248 (47%), Gaps = 24/248 (9%)
Query: 82 IVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM--- 138
I AEE + + +K GR+ V+ V +Y + + + + R PP
Sbjct: 19 IDKFLAEECEQWSRTQIQNWIKEGRVTVNGRPVKANYKLSEN---DYVVLRVPPPRELSI 75
Query: 139 ---AWDVSILQKEPDVLTVCKPPSVPVHPC-GQYRKNTVVGILQAEHDLAP----LFP-- 188
D+ I+ ++ DVL V KP + VHP G Y V G+L +L+ L P
Sbjct: 76 EPEQMDLDIVYEDEDVLVVNKPRGLVVHPAPGHYSGTLVNGLLAHCQNLSGINGILRPGI 135
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNA 248
VHR+D+ SGLL++A+N +Q+ +VI++Y+A V+G ++ I N
Sbjct: 136 VHRIDKDTSGLLMVAKNDRAHLSLAKQLSEHRVIRKYVALVHGQVGHNSGTINAPIGRNP 195
Query: 249 SAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGY 308
+ A GK A T F I ++++ C+ TGRTHQIRVHL+Y G+
Sbjct: 196 HNRQQMAVVSG--------GKPAVTHFQVIKRFNRYTLIECQLETGRTHQIRVHLKYIGH 247
Query: 309 PIANDMLY 316
P+A D +Y
Sbjct: 248 PLAGDPVY 255
>gi|83319260|ref|YP_424375.1| ribosomal large subunit pseudouridine synthase A [Mycoplasma
capricolum subsp. capricolum ATCC 27343]
gi|83283146|gb|ABC01078.1| ribosomal large subunit pseudouridine synthase, RluA family
[Mycoplasma capricolum subsp. capricolum ATCC 27343]
Length = 322
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 14/187 (7%)
Query: 141 DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLD 193
D++I+ ++ D+L + K ++ VHP NT+V +L ++ +L+ L P VHR+D
Sbjct: 94 DLNIIYQDDDLLVINKQNNITVHPSLNNTNNTIVNALLASDVELSSINGELRPGIVHRID 153
Query: 194 RLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRS 253
+ +GLLI+A+N L + + ++ K Y+A V GV + ++D A GRS
Sbjct: 154 KQTTGLLIVAKNDKTHKLLSEMFKNHQIYKEYLAIVTGVIKPNKGLID------APIGRS 207
Query: 254 TAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
+ + T K A T F + ++++ C+ TGRTHQIRVH Y +P+ ND
Sbjct: 208 QTDRK-KMSVTAKNSKHAITTFEVVERFLKNTLIKCQIQTGRTHQIRVHFNYINHPVLND 266
Query: 314 MLYLCEH 320
+Y +H
Sbjct: 267 PIYGKKH 273
>gi|169827034|ref|YP_001697192.1| RNA pseudouridine synthase ylyB [Lysinibacillus sphaericus C3-41]
gi|168991522|gb|ACA39062.1| Hypothetical RNA pseudouridine synthase ylyB [Lysinibacillus
sphaericus C3-41]
Length = 303
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 18/222 (8%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMAWDVS--ILQKEPDVLTVCKPPSVP 161
G I+V+ + V Y VK+ I+ + EP V+A +++ I+ ++ DVL V KP +
Sbjct: 40 GNIKVNGDAVKAKYKVKAGDVIAIDVPEAEPLDVIAENLALDIVYEDADVLVVNKPKGMV 99
Query: 162 VHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADLFRQ 214
VHP + T+V G++ DL+ + VHR+D+ SGLL++A+N +
Sbjct: 100 VHPAPGHMTGTLVNGLMYQCKDLSGINGIMRPGIVHRIDKDTSGLLMVAKNDVAHESLVD 159
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTK 274
Q+ V ++YIA V+G + +D I + + A + GK A T
Sbjct: 160 QLVNKTVTRKYIALVHGHIAHDKGTIDAPIGRDQKDRQKQAIVDN--------GKHAVTH 211
Query: 275 FTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
F + G +++V C TGRTHQIRVH+ Y G+P+ D Y
Sbjct: 212 FHVVERFGDYTLVECRLETGRTHQIRVHMNYIGFPLVGDPKY 253
>gi|375008115|ref|YP_004981748.1| Pseudouridine synthase [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359286964|gb|AEV18648.1| Pseudouridine synthase [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 304
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 121/255 (47%), Gaps = 17/255 (6%)
Query: 72 HVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS---H 128
H+++ + G+ I + A + +K G + V+ E V +Y ++ ++
Sbjct: 7 HIEDEYDGERIDKVIAALNEEWSRSQVQQWIKSGLVTVNGETVKANYKCEAGDAVAVSPP 66
Query: 129 FLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE-HDLAP-- 185
E + I ++ DVL V KP + VHP + + T+V L A DL+
Sbjct: 67 EPEPLEVEPEPIPLDIYYEDEDVLVVNKPRGMVVHPAPGHMRGTLVNALLAHCRDLSGIN 126
Query: 186 --LFP--VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
L P VHR+D+ SGLL++A+N + +Q+ V +RY A V+GV P +D
Sbjct: 127 GVLRPGIVHRIDKDTSGLLMVAKNDAAHRSLVEQLVNKTVTRRYKAIVHGVIPHDYGTID 186
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
I + + A + ++ GK A T F + ++ V C+ TGRTHQIRV
Sbjct: 187 APIGRDKRDRKKMAVTEEN-------GKEAVTHFRVLERFRQYTYVECQLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPQY 254
>gi|223043754|ref|ZP_03613797.1| ribosomal large subunit pseudouridine synthase, RluA family
[Staphylococcus capitis SK14]
gi|417907049|ref|ZP_12550825.1| pseudouridine synthase, RluA family [Staphylococcus capitis VCU116]
gi|222442851|gb|EEE48953.1| ribosomal large subunit pseudouridine synthase, RluA family
[Staphylococcus capitis SK14]
gi|341596680|gb|EGS39271.1| pseudouridine synthase, RluA family [Staphylococcus capitis VCU116]
Length = 305
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 40/262 (15%)
Query: 68 EFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS 127
+F+S + W+ + D E+ ++V+++++ +Y VK +
Sbjct: 20 KFLSESNDAWSRSQLQDWIKEDL----------------VKVNDKVIKSNYKVKLN---D 60
Query: 128 HFLHRHEPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPC-GQYRKNTVVGILQAE 180
H + + V A D+ I ++ DV V KP + VHP G Y V G++
Sbjct: 61 HIIVTEKEVVEADIQPEDLDLDIYYEDDDVAIVYKPKGMVVHPSPGHYTGTLVNGLMYQI 120
Query: 181 HDLAPL------FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFP 234
+L+ + VHR+D+ SGLL++A+N +Q+ A V ++Y A V+ P
Sbjct: 121 KNLSGINGEIRPGIVHRIDKDTSGLLMVAKNDIAHRGLVEQLMAKSVKRKYTALVHDNIP 180
Query: 235 EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITG 294
VD I N + ++ A D GK A T F I ++++ CE TG
Sbjct: 181 HDYGTVDAPIGRNKNDRQAMAVVDD--------GKEAVTHFNVIEHFKDYTLIECELETG 232
Query: 295 RTHQIRVHLQYTGYPIANDMLY 316
RTHQIRVH++Y GYP+ D Y
Sbjct: 233 RTHQIRVHMKYIGYPLVGDPKY 254
>gi|418307397|ref|ZP_12919110.1| pseudouridine synthase, RluA family, partial [Staphylococcus aureus
subsp. aureus 21194]
gi|365245664|gb|EHM86280.1| pseudouridine synthase, RluA family, partial [Staphylococcus aureus
subsp. aureus 21194]
Length = 274
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + ++++V +Y VK + I E V+ D+ I ++ DV V
Sbjct: 38 IKAGLVVANDKVVKSNYKVKLNDHIV----VTEKEVVEADILPENLNLDIYYEDDDVAVV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ DL+ + VHR+D SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTNTLVNGLMYQIKDLSGINGEIRPGIVHRIDMDTSGLLMVAKNDI 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ V ++YIA V+G P +D I N + +S A D
Sbjct: 154 AHRGLVEQLMDKSVKRKYIALVHGNIPHDYGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +++V C+ TGRTHQIRVH++Y G+P+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKEYTLVECQLETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|262043217|ref|ZP_06016352.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|259039444|gb|EEW40580.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
Length = 331
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ V Y V+ +++
Sbjct: 32 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEAGDEVRIPPVRVAERE 91
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 92 EEAVSPHLQKVAALSEVILYEDDHILVLNKPSGTAVHGGSGLSYGVIEGLRALRPEARFL 151
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 152 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQAPLLK 211
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 212 N------ILQSGERIVRVSQEGKPSETRFKVEERYEFATLVRCSPVTGRTHQIRVHTQYA 265
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 266 GHPIAFDDRY 275
>gi|262038336|ref|ZP_06011717.1| ribosomal large subunit pseudouridine synthase D [Leptotrichia
goodfellowii F0264]
gi|261747640|gb|EEY35098.1| ribosomal large subunit pseudouridine synthase D [Leptotrichia
goodfellowii F0264]
Length = 346
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 31/252 (12%)
Query: 83 VDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMA-- 139
VD F E +K G + V+ + V SY V+ + +I + E ++A
Sbjct: 53 VDSFLSEKTDLTRSRIQQLIKDGNVSVNNKSVKSSYKVEENDRIEIIIPEAEKVEIIAEN 112
Query: 140 WDVSILQKEPDVLTVCKPPSVPVHPC-GQYRKNTVVGILQAEHDLA----PLFP--VHRL 192
D++I+ ++ D+ + K + VHP G Y + V IL DL+ + P VHRL
Sbjct: 113 IDINIIYEDKDIAVINKKAGMVVHPAHGNYSRTLVNAILYHIKDLSGINGEIRPGIVHRL 172
Query: 193 DRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGR 252
D+ SGL+++A+N + + +V K Y+A + G N +GR
Sbjct: 173 DKDTSGLIVVAKNDKAHIKLAEMFQKKEVKKTYLAILKG-------------KLNRESGR 219
Query: 253 STAESGDSLGDTPL--------KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
+ G D KGK A T + I +N ++V TGRTHQIRVH++
Sbjct: 220 LETQIGRDADDRKKMSVLKENDKGKKAITNYNVILSNELFTLVKVYIETGRTHQIRVHMK 279
Query: 305 YTGYPIANDMLY 316
Y GYPI D +Y
Sbjct: 280 YLGYPILGDQVY 291
>gi|19745906|ref|NP_607042.1| hypothetical protein spyM18_0889 [Streptococcus pyogenes MGAS8232]
gi|19748060|gb|AAL97541.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
Length = 296
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ + YTV++ I L + E V+ + + I+ ++ + + K
Sbjct: 31 IKQGLVLVNGQQKKAKYTVQAGDVICFELPKEE--VLEYQAQNIPLDIIYEDDALAIINK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ + VHR+D+ SGLL++A+ +
Sbjct: 89 PQGMVVHPSAGHPSETMVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKTDAAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
++++A K +++Y+A V+G P +++ I + + A + KGK
Sbjct: 149 QALTEELKAKKSLRKYLAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+FT + G +S+V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 201 EAVTRFTVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|257878226|ref|ZP_05657879.1| pseudouridylate synthase [Enterococcus faecium 1,230,933]
gi|257880994|ref|ZP_05660647.1| pseudouridylate synthase [Enterococcus faecium 1,231,502]
gi|257889576|ref|ZP_05669229.1| pseudouridylate synthase [Enterococcus faecium 1,231,410]
gi|257892484|ref|ZP_05672137.1| pseudouridylate synthase [Enterococcus faecium 1,231,408]
gi|260559776|ref|ZP_05831955.1| pseudouridylate synthase [Enterococcus faecium C68]
gi|293559348|ref|ZP_06675890.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1162]
gi|293569846|ref|ZP_06680933.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1071]
gi|294621730|ref|ZP_06700894.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium U0317]
gi|314939741|ref|ZP_07846963.1| pseudouridine synthase, RluA family [Enterococcus faecium
TX0133a04]
gi|314941758|ref|ZP_07848635.1| pseudouridine synthase, RluA family [Enterococcus faecium TX0133C]
gi|314948303|ref|ZP_07851695.1| pseudouridine synthase, RluA family [Enterococcus faecium TX0082]
gi|314952391|ref|ZP_07855398.1| pseudouridine synthase, RluA family [Enterococcus faecium TX0133A]
gi|314991990|ref|ZP_07857443.1| pseudouridine synthase, RluA family [Enterococcus faecium TX0133B]
gi|314995712|ref|ZP_07860802.1| pseudouridine synthase, RluA family [Enterococcus faecium
TX0133a01]
gi|383328291|ref|YP_005354175.1| RluA family pseudouridine synthase [Enterococcus faecium Aus0004]
gi|389868530|ref|YP_006375953.1| pseudouridylate synthase [Enterococcus faecium DO]
gi|406581288|ref|ZP_11056446.1| RluA family pseudouridine synthase [Enterococcus sp. GMD4E]
gi|406583592|ref|ZP_11058648.1| RluA family pseudouridine synthase [Enterococcus sp. GMD3E]
gi|406585861|ref|ZP_11060815.1| RluA family pseudouridine synthase [Enterococcus sp. GMD2E]
gi|406591362|ref|ZP_11065646.1| RluA family pseudouridine synthase [Enterococcus sp. GMD1E]
gi|410937476|ref|ZP_11369336.1| pseudouridylate synthase [Enterococcus sp. GMD5E]
gi|415899988|ref|ZP_11551736.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E4453]
gi|424790436|ref|ZP_18216980.1| pseudouridine synthase, RluA family [Enterococcus faecium V689]
gi|424795203|ref|ZP_18221087.1| pseudouridine synthase, RluA family [Enterococcus faecium S447]
gi|424857346|ref|ZP_18281506.1| pseudouridine synthase, RluA family [Enterococcus faecium R499]
gi|424907805|ref|ZP_18331258.1| pseudouridine synthase, RluA family [Enterococcus faecium R497]
gi|424950447|ref|ZP_18365611.1| pseudouridine synthase, RluA family [Enterococcus faecium R496]
gi|424954133|ref|ZP_18369048.1| pseudouridine synthase, RluA family [Enterococcus faecium R494]
gi|424955881|ref|ZP_18370688.1| pseudouridine synthase, RluA family [Enterococcus faecium R446]
gi|424959148|ref|ZP_18373749.1| pseudouridine synthase, RluA family [Enterococcus faecium P1986]
gi|424963812|ref|ZP_18377965.1| pseudouridine synthase, RluA family [Enterococcus faecium P1190]
gi|424969001|ref|ZP_18382592.1| pseudouridine synthase, RluA family [Enterococcus faecium P1140]
gi|424970858|ref|ZP_18384334.1| pseudouridine synthase, RluA family [Enterococcus faecium P1139]
gi|424975249|ref|ZP_18388423.1| pseudouridine synthase, RluA family [Enterococcus faecium P1137]
gi|424979575|ref|ZP_18392419.1| pseudouridine synthase, RluA family [Enterococcus faecium P1123]
gi|424981648|ref|ZP_18394369.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV99]
gi|424983351|ref|ZP_18395944.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV69]
gi|424988051|ref|ZP_18400393.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV38]
gi|424991676|ref|ZP_18403811.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV26]
gi|424993822|ref|ZP_18405797.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV168]
gi|424997132|ref|ZP_18408899.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV165]
gi|425000110|ref|ZP_18411691.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV161]
gi|425004135|ref|ZP_18415464.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV102]
gi|425007659|ref|ZP_18418779.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV1]
gi|425009934|ref|ZP_18420917.1| pseudouridine synthase, RluA family [Enterococcus faecium E422]
gi|425013990|ref|ZP_18424687.1| pseudouridine synthase, RluA family [Enterococcus faecium E417]
gi|425016446|ref|ZP_18427010.1| pseudouridine synthase, RluA family [Enterococcus faecium C621]
gi|425019678|ref|ZP_18430021.1| pseudouridine synthase, RluA family [Enterococcus faecium C497]
gi|425023611|ref|ZP_18433721.1| pseudouridine synthase, RluA family [Enterococcus faecium C1904]
gi|425031025|ref|ZP_18436170.1| pseudouridine synthase, RluA family [Enterococcus faecium 515]
gi|425035452|ref|ZP_18440288.1| pseudouridine synthase, RluA family [Enterococcus faecium 514]
gi|425038031|ref|ZP_18442664.1| pseudouridine synthase, RluA family [Enterococcus faecium 513]
gi|425040841|ref|ZP_18445283.1| pseudouridine synthase, RluA family [Enterococcus faecium 511]
gi|425044098|ref|ZP_18448282.1| pseudouridine synthase, RluA family [Enterococcus faecium 510]
gi|425047425|ref|ZP_18451378.1| pseudouridine synthase, RluA family [Enterococcus faecium 509]
gi|425053912|ref|ZP_18457431.1| pseudouridine synthase, RluA family [Enterococcus faecium 506]
gi|425060223|ref|ZP_18463521.1| pseudouridine synthase, RluA family [Enterococcus faecium 503]
gi|427394942|ref|ZP_18887864.1| RluA family pseudouridine synthase [Enterococcus durans
FB129-CNAB-4]
gi|430830513|ref|ZP_19448571.1| RluA family pseudouridine synthase [Enterococcus faecium E0333]
gi|430844296|ref|ZP_19462194.1| RluA family pseudouridine synthase [Enterococcus faecium E1050]
gi|430846276|ref|ZP_19464136.1| RluA family pseudouridine synthase [Enterococcus faecium E1133]
gi|430854615|ref|ZP_19472328.1| RluA family pseudouridine synthase [Enterococcus faecium E1392]
gi|430862181|ref|ZP_19479533.1| RluA family pseudouridine synthase [Enterococcus faecium E1573]
gi|430959905|ref|ZP_19487040.1| RluA family pseudouridine synthase [Enterococcus faecium E1576]
gi|431008935|ref|ZP_19489375.1| RluA family pseudouridine synthase [Enterococcus faecium E1578]
gi|431228594|ref|ZP_19501735.1| RluA family pseudouridine synthase [Enterococcus faecium E1622]
gi|431258945|ref|ZP_19505122.1| RluA family pseudouridine synthase [Enterococcus faecium E1623]
gi|431369935|ref|ZP_19509634.1| RluA family pseudouridine synthase [Enterococcus faecium E1627]
gi|431499479|ref|ZP_19515058.1| RluA family pseudouridine synthase [Enterococcus faecium E1634]
gi|431539725|ref|ZP_19517929.1| RluA family pseudouridine synthase [Enterococcus faecium E1731]
gi|431745976|ref|ZP_19534813.1| RluA family pseudouridine synthase [Enterococcus faecium E2134]
gi|431748515|ref|ZP_19537272.1| RluA family pseudouridine synthase [Enterococcus faecium E2297]
gi|431754618|ref|ZP_19543279.1| RluA family pseudouridine synthase [Enterococcus faecium E2883]
gi|431770610|ref|ZP_19559010.1| RluA family pseudouridine synthase [Enterococcus faecium E1644]
gi|431773136|ref|ZP_19561469.1| RluA family pseudouridine synthase [Enterococcus faecium E2369]
gi|431775999|ref|ZP_19564268.1| RluA family pseudouridine synthase [Enterococcus faecium E2560]
gi|431778534|ref|ZP_19566745.1| RluA family pseudouridine synthase [Enterococcus faecium E4389]
gi|431782102|ref|ZP_19570240.1| RluA family pseudouridine synthase [Enterococcus faecium E6012]
gi|431785508|ref|ZP_19573533.1| RluA family pseudouridine synthase [Enterococcus faecium E6045]
gi|447913117|ref|YP_007394529.1| Ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium NRRL B-2354]
gi|257812454|gb|EEV41212.1| pseudouridylate synthase [Enterococcus faecium 1,230,933]
gi|257816652|gb|EEV43980.1| pseudouridylate synthase [Enterococcus faecium 1,231,502]
gi|257825936|gb|EEV52562.1| pseudouridylate synthase [Enterococcus faecium 1,231,410]
gi|257828863|gb|EEV55470.1| pseudouridylate synthase [Enterococcus faecium 1,231,408]
gi|260074000|gb|EEW62323.1| pseudouridylate synthase [Enterococcus faecium C68]
gi|291587594|gb|EFF19471.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1071]
gi|291598739|gb|EFF29792.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium U0317]
gi|291606712|gb|EFF36104.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1162]
gi|313590103|gb|EFR68948.1| pseudouridine synthase, RluA family [Enterococcus faecium
TX0133a01]
gi|313593425|gb|EFR72270.1| pseudouridine synthase, RluA family [Enterococcus faecium TX0133B]
gi|313595508|gb|EFR74353.1| pseudouridine synthase, RluA family [Enterococcus faecium TX0133A]
gi|313599436|gb|EFR78279.1| pseudouridine synthase, RluA family [Enterococcus faecium TX0133C]
gi|313640970|gb|EFS05550.1| pseudouridine synthase, RluA family [Enterococcus faecium
TX0133a04]
gi|313645284|gb|EFS09864.1| pseudouridine synthase, RluA family [Enterococcus faecium TX0082]
gi|364089059|gb|EHM31781.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E4453]
gi|378937985|gb|AFC63057.1| pseudouridine synthase, RluA family [Enterococcus faecium Aus0004]
gi|388533779|gb|AFK58971.1| pseudouridylate synthase [Enterococcus faecium DO]
gi|402920777|gb|EJX41265.1| pseudouridine synthase, RluA family [Enterococcus faecium V689]
gi|402924802|gb|EJX44990.1| pseudouridine synthase, RluA family [Enterococcus faecium S447]
gi|402929095|gb|EJX48889.1| pseudouridine synthase, RluA family [Enterococcus faecium R499]
gi|402929667|gb|EJX49405.1| pseudouridine synthase, RluA family [Enterococcus faecium R497]
gi|402933179|gb|EJX52634.1| pseudouridine synthase, RluA family [Enterococcus faecium R496]
gi|402937617|gb|EJX56719.1| pseudouridine synthase, RluA family [Enterococcus faecium R494]
gi|402947438|gb|EJX65648.1| pseudouridine synthase, RluA family [Enterococcus faecium R446]
gi|402948129|gb|EJX66294.1| pseudouridine synthase, RluA family [Enterococcus faecium P1190]
gi|402949976|gb|EJX68001.1| pseudouridine synthase, RluA family [Enterococcus faecium P1140]
gi|402951210|gb|EJX69159.1| pseudouridine synthase, RluA family [Enterococcus faecium P1986]
gi|402954282|gb|EJX71918.1| pseudouridine synthase, RluA family [Enterococcus faecium P1137]
gi|402957504|gb|EJX74892.1| pseudouridine synthase, RluA family [Enterococcus faecium P1123]
gi|402960500|gb|EJX77637.1| pseudouridine synthase, RluA family [Enterococcus faecium P1139]
gi|402963258|gb|EJX80143.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV99]
gi|402971822|gb|EJX88067.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV69]
gi|402973029|gb|EJX89182.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV38]
gi|402976157|gb|EJX92072.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV26]
gi|402981680|gb|EJX97195.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV168]
gi|402986753|gb|EJY01862.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV165]
gi|402989884|gb|EJY04786.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV161]
gi|402990538|gb|EJY05408.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV102]
gi|402994548|gb|EJY09074.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV1]
gi|402999798|gb|EJY13969.1| pseudouridine synthase, RluA family [Enterococcus faecium E417]
gi|403001579|gb|EJY15625.1| pseudouridine synthase, RluA family [Enterococcus faecium E422]
gi|403007115|gb|EJY20710.1| pseudouridine synthase, RluA family [Enterococcus faecium C621]
gi|403009283|gb|EJY22740.1| pseudouridine synthase, RluA family [Enterococcus faecium C1904]
gi|403011007|gb|EJY24345.1| pseudouridine synthase, RluA family [Enterococcus faecium C497]
gi|403016436|gb|EJY29254.1| pseudouridine synthase, RluA family [Enterococcus faecium 515]
gi|403017943|gb|EJY30664.1| pseudouridine synthase, RluA family [Enterococcus faecium 514]
gi|403020389|gb|EJY32931.1| pseudouridine synthase, RluA family [Enterococcus faecium 513]
gi|403027699|gb|EJY39574.1| pseudouridine synthase, RluA family [Enterococcus faecium 511]
gi|403028578|gb|EJY40396.1| pseudouridine synthase, RluA family [Enterococcus faecium 506]
gi|403030860|gb|EJY42514.1| pseudouridine synthase, RluA family [Enterococcus faecium 510]
gi|403033618|gb|EJY45110.1| pseudouridine synthase, RluA family [Enterococcus faecium 509]
gi|403042820|gb|EJY53762.1| pseudouridine synthase, RluA family [Enterococcus faecium 503]
gi|404452818|gb|EJZ99969.1| RluA family pseudouridine synthase [Enterococcus sp. GMD4E]
gi|404456387|gb|EKA03110.1| RluA family pseudouridine synthase [Enterococcus sp. GMD3E]
gi|404461969|gb|EKA07817.1| RluA family pseudouridine synthase [Enterococcus sp. GMD2E]
gi|404467838|gb|EKA12898.1| RluA family pseudouridine synthase [Enterococcus sp. GMD1E]
gi|410734089|gb|EKQ76010.1| pseudouridylate synthase [Enterococcus sp. GMD5E]
gi|425724078|gb|EKU86962.1| RluA family pseudouridine synthase [Enterococcus durans
FB129-CNAB-4]
gi|430483115|gb|ELA60214.1| RluA family pseudouridine synthase [Enterococcus faecium E0333]
gi|430496886|gb|ELA72945.1| RluA family pseudouridine synthase [Enterococcus faecium E1050]
gi|430539070|gb|ELA79332.1| RluA family pseudouridine synthase [Enterococcus faecium E1133]
gi|430548274|gb|ELA88179.1| RluA family pseudouridine synthase [Enterococcus faecium E1392]
gi|430549472|gb|ELA89304.1| RluA family pseudouridine synthase [Enterococcus faecium E1573]
gi|430556389|gb|ELA95897.1| RluA family pseudouridine synthase [Enterococcus faecium E1576]
gi|430560850|gb|ELB00142.1| RluA family pseudouridine synthase [Enterococcus faecium E1578]
gi|430574896|gb|ELB13659.1| RluA family pseudouridine synthase [Enterococcus faecium E1622]
gi|430577040|gb|ELB15645.1| RluA family pseudouridine synthase [Enterococcus faecium E1623]
gi|430583682|gb|ELB22040.1| RluA family pseudouridine synthase [Enterococcus faecium E1627]
gi|430588115|gb|ELB26320.1| RluA family pseudouridine synthase [Enterococcus faecium E1634]
gi|430593945|gb|ELB31920.1| RluA family pseudouridine synthase [Enterococcus faecium E1731]
gi|430609616|gb|ELB46800.1| RluA family pseudouridine synthase [Enterococcus faecium E2134]
gi|430613436|gb|ELB50446.1| RluA family pseudouridine synthase [Enterococcus faecium E2297]
gi|430619212|gb|ELB56040.1| RluA family pseudouridine synthase [Enterococcus faecium E2883]
gi|430635537|gb|ELB71633.1| RluA family pseudouridine synthase [Enterococcus faecium E1644]
gi|430637203|gb|ELB73236.1| RluA family pseudouridine synthase [Enterococcus faecium E2369]
gi|430642114|gb|ELB77897.1| RluA family pseudouridine synthase [Enterococcus faecium E2560]
gi|430644080|gb|ELB79783.1| RluA family pseudouridine synthase [Enterococcus faecium E4389]
gi|430647477|gb|ELB82923.1| RluA family pseudouridine synthase [Enterococcus faecium E6045]
gi|430648117|gb|ELB83540.1| RluA family pseudouridine synthase [Enterococcus faecium E6012]
gi|445188826|gb|AGE30468.1| Ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium NRRL B-2354]
Length = 303
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 114/229 (49%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + V+ + V +Y VK +I+ + P DV +I+ ++ DV +
Sbjct: 35 LKNGAVSVNGQPVKANYKVKQGDEITVLI----PEPETLDVVPENIPLTIVYEDEDVAVI 90
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 91 NKPQGMVVHPSAGHTHGTMVNALMYHIKDLSTINGVIRPGIVHRIDKDTSGLLMVAKNDQ 150
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ QQ++ +++Y+A V+G P + + NA GRS + +
Sbjct: 151 AHESLAQQLKDKTSLRKYVALVHGEIPHEKGTI------NAPIGRS--KENRKMQAIRED 202
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK+A T FT + ++V + TGRTHQIRVH++Y GYP+A D +Y
Sbjct: 203 GKSAVTHFTVLERFEGFTLVELKLETGRTHQIRVHMKYIGYPLAGDPVY 251
>gi|49483360|ref|YP_040584.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257425250|ref|ZP_05601675.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus 55/2053]
gi|257427910|ref|ZP_05604308.1| ribosomal large subunit psudouridine synthase D [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257430543|ref|ZP_05606925.1| pseudouridine synthase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433304|ref|ZP_05609662.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus
E1410]
gi|257436146|ref|ZP_05612193.1| pseudouridine synthase [Staphylococcus aureus subsp. aureus M876]
gi|282903750|ref|ZP_06311638.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus C160]
gi|282905514|ref|ZP_06313369.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282908489|ref|ZP_06316319.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282910769|ref|ZP_06318572.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282913972|ref|ZP_06321759.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus M899]
gi|282918894|ref|ZP_06326629.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus C427]
gi|282924017|ref|ZP_06331693.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus C101]
gi|283957938|ref|ZP_06375389.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus A017934/97]
gi|293501005|ref|ZP_06666856.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus 58-424]
gi|293509964|ref|ZP_06668672.1| RNA pseudouridine synthase ylyB [Staphylococcus aureus subsp.
aureus M809]
gi|293526552|ref|ZP_06671237.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus M1015]
gi|295427682|ref|ZP_06820314.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus EMRSA16]
gi|297591359|ref|ZP_06949997.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus MN8]
gi|384867921|ref|YP_005748117.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus TCH60]
gi|415683785|ref|ZP_11448987.1| putative RNA pseudouridylate synthase [Staphylococcus aureus subsp.
aureus CGS00]
gi|417887095|ref|ZP_12531234.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21195]
gi|418566685|ref|ZP_13131058.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21264]
gi|418582031|ref|ZP_13146109.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418597702|ref|ZP_13161224.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21342]
gi|418603199|ref|ZP_13166590.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21345]
gi|418891830|ref|ZP_13445945.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418897734|ref|ZP_13451804.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|418900604|ref|ZP_13454661.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418908908|ref|ZP_13462911.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG149]
gi|418916992|ref|ZP_13470951.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418922779|ref|ZP_13476696.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418982110|ref|ZP_13529818.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418985777|ref|ZP_13533463.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1500]
gi|49241489|emb|CAG40175.1| putative RNA pseudouridylate synthase [Staphylococcus aureus subsp.
aureus MRSA252]
gi|257271707|gb|EEV03845.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus 55/2053]
gi|257274751|gb|EEV06238.1| ribosomal large subunit psudouridine synthase D [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257278671|gb|EEV09290.1| pseudouridine synthase [Staphylococcus aureus subsp. aureus 68-397]
gi|257281397|gb|EEV11534.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus
E1410]
gi|257284428|gb|EEV14548.1| pseudouridine synthase [Staphylococcus aureus subsp. aureus M876]
gi|282313989|gb|EFB44381.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus C101]
gi|282316704|gb|EFB47078.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus C427]
gi|282322040|gb|EFB52364.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus M899]
gi|282325374|gb|EFB55683.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282327551|gb|EFB57834.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282330806|gb|EFB60320.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282595368|gb|EFC00332.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus C160]
gi|283790087|gb|EFC28904.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus A017934/97]
gi|290920624|gb|EFD97687.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus M1015]
gi|291096010|gb|EFE26271.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus 58-424]
gi|291466908|gb|EFF09426.1| RNA pseudouridine synthase ylyB [Staphylococcus aureus subsp.
aureus M809]
gi|295128040|gb|EFG57674.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus EMRSA16]
gi|297576245|gb|EFH94961.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus MN8]
gi|312438426|gb|ADQ77497.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus TCH60]
gi|315194083|gb|EFU24476.1| putative RNA pseudouridylate synthase [Staphylococcus aureus subsp.
aureus CGS00]
gi|341858517|gb|EGS99307.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21195]
gi|371969955|gb|EHO87393.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21264]
gi|374393764|gb|EHQ65068.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21342]
gi|374393928|gb|EHQ65231.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21345]
gi|377703072|gb|EHT27388.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377704391|gb|EHT28700.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377705595|gb|EHT29899.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377710441|gb|EHT34679.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377731162|gb|EHT55219.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377736102|gb|EHT60132.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377750166|gb|EHT74104.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377753946|gb|EHT77856.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG149]
gi|377760769|gb|EHT84645.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIGC341D]
Length = 305
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + ++++V +Y VK + I E V+ D+ I ++ DV V
Sbjct: 38 IKAGLVVANDKVVKSNYKVKLNDHIV----VTEKEVVEADILPENLNLDIYYEDDDVAVV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ DL+ + VHR+D SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTNTLVNGLMYQIKDLSGINGEIRPGIVHRIDMDTSGLLMVAKNDI 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ V ++YIA V+G P +D I N + +S A D
Sbjct: 154 AHRGLVEQLMDKSVKRKYIALVHGNIPHDYGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +++V C+ TGRTHQIRVH++Y G+P+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|398818376|ref|ZP_10576968.1| pseudouridine synthase, RluA family [Brevibacillus sp. BC25]
gi|398028144|gb|EJL21668.1| pseudouridine synthase, RluA family [Brevibacillus sp. BC25]
Length = 309
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 125/249 (50%), Gaps = 22/249 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA-----WDVSILQKEPDVLTVCK 156
VK GR+ V+ E + +Y +++ +++ L P MA + I+ ++ DV+ V K
Sbjct: 43 VKEGRVTVNGEPIKNNYKLQAEDEVT--LRVPPPKEMAIQPEEMSLDIVYEDSDVVVVNK 100
Query: 157 PPSVPVHPC-GQYRKNTVVGILQAEHDLA----PLFP--VHRLDRLVSGLLILARNASKA 209
P + VHP G Y V G+L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 101 PRGLVVHPAPGHYSGTLVNGLLAHCKDLSGINGVLRPGIVHRIDKDTSGLLMVAKNDKAH 160
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+Q++A V ++Y+A V+GV P ++ I + + A ++ K
Sbjct: 161 MGLAEQLKAHTVNRKYVAIVHGVIPHEMGTIEAPIGRDPKNRQQMAVVFEN-------SK 213
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSA 329
A T F + +++V + TGRTHQIRVH++Y GYP+A D Y ++ +G +
Sbjct: 214 PAVTHFIVLERFKEYTLVELKLETGRTHQIRVHMKYIGYPLAGDPKYGPKNTVELDGQAL 273
Query: 330 D-RAAAYSH 337
+ +SH
Sbjct: 274 HAKTLGFSH 282
>gi|167032492|ref|YP_001667723.1| RluA family pseudouridine synthase [Pseudomonas putida GB-1]
gi|166858980|gb|ABY97387.1| pseudouridine synthase, RluA family [Pseudomonas putida GB-1]
Length = 333
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ V Y +++ + R
Sbjct: 36 AGQRIDNFLITALKGVPKTLVYRILRKGEVRVNKGRVKPEYKIQAGDIVRVPPVRLPERD 95
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ + KP + VH + + Q D L
Sbjct: 96 EPAPVAQGLLQRLEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQLRPDAKELE 155
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SGLL++A+ S + V KRY+A V G +P ++ V N
Sbjct: 156 LVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWPTSKKQV------N 209
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQYT 306
A +S SG+ + + +GK A T F + G +IV PITGRTHQIRVH +
Sbjct: 210 APLLKSNLRSGERMVEVSDEGKEALTLFRVLRRFGEFATIVEARPITGRTHQIRVHTLHA 269
Query: 307 GYPIANDMLY 316
G+ IA D Y
Sbjct: 270 GHMIAGDSKY 279
>gi|282916446|ref|ZP_06324208.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus D139]
gi|283770258|ref|ZP_06343150.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus H19]
gi|384547441|ref|YP_005736694.1| hypothetical protein SAOV_1200 [Staphylococcus aureus subsp. aureus
ED133]
gi|387780306|ref|YP_005755104.1| putative RNA pseudouridylate synthase [Staphylococcus aureus subsp.
aureus LGA251]
gi|417904165|ref|ZP_12547995.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21269]
gi|418282837|ref|ZP_12895594.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21202]
gi|418559087|ref|ZP_13123633.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21252]
gi|418993812|ref|ZP_13541449.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG290]
gi|282319886|gb|EFB50234.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus D139]
gi|283460405|gb|EFC07495.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus H19]
gi|298694490|gb|ADI97712.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ED133]
gi|341847988|gb|EGS89157.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21269]
gi|344177408|emb|CCC87876.1| putative RNA pseudouridylate synthase [Staphylococcus aureus subsp.
aureus LGA251]
gi|365168434|gb|EHM59772.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21202]
gi|371975378|gb|EHO92672.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21252]
gi|377746971|gb|EHT70941.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG290]
Length = 305
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + ++++V +Y VK + I E V+ D+ I ++ DV V
Sbjct: 38 IKAGLVVANDKVVKSNYKVKLNDHIV----VTEKEVVEADILPENLNLDIYYEDDDVAVV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ DL+ + VHR+D SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTNTLVNGLMYQIKDLSGINGEIRPGIVHRIDMDTSGLLMVAKNDI 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ V ++YIA V+G P +D I N + +S A D
Sbjct: 154 AHRGLVEQLMDKSVKRKYIALVHGNIPHDYGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +++V C+ TGRTHQIRVH++Y G+P+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|445059883|ref|YP_007385287.1| RluA family pseudouridine synthase [Staphylococcus warneri SG1]
gi|443425940|gb|AGC90843.1| RluA family pseudouridine synthase [Staphylococcus warneri SG1]
Length = 305
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTV 154
+K ++V++++V +Y VK + I E V+ D++ I ++ DV V
Sbjct: 38 IKEDLVKVNDKVVKPNYKVKQNDNIV----VTEQEVVEADITPENLNLDIFYEDDDVAIV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ +L+ + VHR+D SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTGTLVNGLMYQIKNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDI 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ A V ++YIA V+G P VD I N ++ A D
Sbjct: 154 AHRGLVEQLMAKSVKRKYIALVHGNIPHDYGTVDAPIGRNKKDRQAMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + ++++ CE TGRTHQIRVH++Y G+P+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLIECELETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|15674865|ref|NP_269039.1| hypothetical protein SPy_0827 [Streptococcus pyogenes SF370]
gi|50914002|ref|YP_059974.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes MGAS10394]
gi|71910451|ref|YP_282001.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes MGAS5005]
gi|94988324|ref|YP_596425.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes MGAS9429]
gi|306827571|ref|ZP_07460852.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes ATCC 10782]
gi|410680318|ref|YP_006932720.1| RluA family pseudouridine synthase [Streptococcus pyogenes A20]
gi|417857153|ref|ZP_12502212.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes HKU QMH11M0907901]
gi|13622001|gb|AAK33760.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|50903076|gb|AAT86791.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes MGAS10394]
gi|71853233|gb|AAZ51256.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes MGAS5005]
gi|94541832|gb|ABF31881.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes MGAS9429]
gi|304430223|gb|EFM33251.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes ATCC 10782]
gi|387934108|gb|EIK42221.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes HKU QMH11M0907901]
gi|395453691|dbj|BAM30030.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes M1 476]
gi|409692907|gb|AFV37767.1| pseudouridine synthase, RluA family protein [Streptococcus pyogenes
A20]
Length = 296
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ + YTV++ I L + E V+ + + I+ ++ + + K
Sbjct: 31 IKQGLVLVNGQQKKAKYTVQAGDVICFELPKEE--VLEYQAQNIPLDIIYEDDALAIINK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ + VHR+D+ SGLL++A+ +
Sbjct: 89 PQGMVVHPSAGHPSGTMVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKTDAAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
++++A K +++Y+A V+G P +++ I + + A + KGK
Sbjct: 149 QALAEELKAKKSLRKYLAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+FT + G +S+V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 201 EAVTRFTVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|449909060|ref|ZP_21794129.1| putative pseudouridylate synthase [Streptococcus mutans OMZ175]
gi|450088979|ref|ZP_21854975.1| putative pseudouridylate synthase [Streptococcus mutans NV1996]
gi|450126371|ref|ZP_21868162.1| putative pseudouridylate synthase [Streptococcus mutans U2A]
gi|450134559|ref|ZP_21871082.1| putative pseudouridylate synthase [Streptococcus mutans NLML8]
gi|449149299|gb|EMB53107.1| putative pseudouridylate synthase [Streptococcus mutans NLML8]
gi|449216064|gb|EMC16217.1| putative pseudouridylate synthase [Streptococcus mutans NV1996]
gi|449231604|gb|EMC30777.1| putative pseudouridylate synthase [Streptococcus mutans U2A]
gi|449261781|gb|EMC59245.1| putative pseudouridylate synthase [Streptococcus mutans OMZ175]
Length = 296
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-------VSILQKEPDVLTV 154
+K G + V+ + Y VK +H P D + I+ ++ DV +
Sbjct: 31 IKAGLVWVNGKTQKAKYAVKEGD----IIHYERPQEEVLDCVAQNIPLEIVYEDEDVAVI 86
Query: 155 CKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V +L DL+ + VHR+D+ SGLL++A+N
Sbjct: 87 NKPQGMVVHPSVGHPSGTLVNALLFHIKDLSSINGVIRPGIVHRIDKDTSGLLMIAKNDQ 146
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
++++ K +++YIA V+G P V++ A GRS E K
Sbjct: 147 AHQALAKELKEKKSLRQYIALVHGNLPNDRGVIE------APIGRS--EKDRKKQTVTAK 198
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK+A T F + G +S+V TGRTHQIRVH+ Y G+PIA D LY
Sbjct: 199 GKSAVTHFKVLERFGQYSLVELTLETGRTHQIRVHMAYIGHPIAGDPLY 247
>gi|417892043|ref|ZP_12536100.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21200]
gi|341851329|gb|EGS92258.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21200]
Length = 305
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + ++++V +Y VK + I E V+ D+ I ++ DV V
Sbjct: 38 IKAGLVVANDKVVKSNYKVKLNDHIV----VTEKEVVEADILPENLNLDIYYEDDDVAVV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ DL+ + VHR+D SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTNTLVNGLMYQIKDLSGINGEIRPGIVHRIDMDTSGLLMVAKNDI 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ V ++YIA V+G P +D I N + +S A D
Sbjct: 154 AHRGLVEQLMDKSVKRKYIALVHGNIPHDYGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +++V C+ TGRTHQIRVH++Y G+P+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|258423760|ref|ZP_05686646.1| ribosomal large subunit psudouridine synthase D [Staphylococcus
aureus A9635]
gi|418888986|ref|ZP_13443122.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1524]
gi|257845992|gb|EEV70020.1| ribosomal large subunit psudouridine synthase D [Staphylococcus
aureus A9635]
gi|377754496|gb|EHT78405.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1524]
Length = 305
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + ++++V +Y VK + I E V+ D+ I ++ DV V
Sbjct: 38 IKAGLVVANDKVVKSNYKVKLNDHIV----VTEKEVVEADILPENLNLDIYYEDDDVAVV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ DL+ + VHR+D SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTNTLVNGLMYQIKDLSGINGEIRPGIVHRIDMDTSGLLMVAKNDI 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ V ++YIA V+G P +D I N + +S A D
Sbjct: 154 AHRGLVEQLMDKSVKRKYIALVHGNIPHDYGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +++V C+ TGRTHQIRVH++Y G+P+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|452879505|ref|ZP_21956598.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa VRFPA01]
gi|452183940|gb|EME10958.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa VRFPA01]
Length = 462
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 18/251 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ + Y +++ ++ R
Sbjct: 21 AGQRIDNFLIARLKGAPKTLIYRILRKGEVRVNKGRIKPDYRLQAGDQVRVPPLRLAERD 80
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ V KP + VH + Q + +
Sbjct: 81 EPAPLAQGLLERMEAAIVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQLRPEARDIE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVI-KRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SGLL++A+ S + + K++ KRY A V G +P G++ N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHEALRGEKIVDKRYHALVRGHWPAGKK------NI 194
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
A ++ SG+ + + ++GK A T+F + G ++V PITGRTHQIRVH ++
Sbjct: 195 RAPLLKNNLRSGERMVEVNVEGKDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKH 254
Query: 306 TGYPIANDMLY 316
G+ IA D Y
Sbjct: 255 AGHAIAGDPKY 265
>gi|424787614|ref|ZP_18214378.1| pseudouridine synthase, RluA family protein [Streptococcus
intermedius BA1]
gi|422113368|gb|EKU17106.1| pseudouridine synthase, RluA family protein [Streptococcus
intermedius BA1]
Length = 298
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G+I V+ ++ Y VK I++ L EP + + + I+ ++ DV V K
Sbjct: 31 IKSGQILVNGQVKKAKYAVKVGDVITYELP--EPETLEYVSENLPLDIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
+ VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 AQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++A K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 IKLADELKAKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAITRFHVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDGVY 247
>gi|385813705|ref|YP_005850098.1| Pseudouridine synthase [Lactobacillus helveticus H10]
gi|323466424|gb|ADX70111.1| Pseudouridine synthase [Lactobacillus helveticus H10]
Length = 310
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 114/230 (49%), Gaps = 28/230 (12%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
VK I V+ ++ VSY +++ KI + P V DV I+ ++ DV+ V
Sbjct: 43 VKEKEILVNHKVEKVSYKIQAGDKIEINV----PAVKPLDVVPENIPLDIVYEDEDVIVV 98
Query: 155 CKPPSVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNAS 207
KP + VHP + +T+V +L DLA P VHR+D+ SGLL++A+NA
Sbjct: 99 NKPQGMVVHPAPGHPDHTLVNALLYHTQDLAQSPEGFRPGIVHRIDKDTSGLLMIAKNAK 158
Query: 208 KADLFRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL 266
+ Q+ A K KR Y A V+G F E V+D I N + A +
Sbjct: 159 ARESLEDQL-AHKTNKRIYWAIVHGNFGEENGVIDAPIGRNPYDRKKMAVVEN------- 210
Query: 267 KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +S++ C+ TGRTHQIRVHL Y G+ +A D LY
Sbjct: 211 -GKKAVTHFKVLRQFKGYSLIECQLETGRTHQIRVHLDYIGHAVAGDPLY 259
>gi|421892164|ref|ZP_16322866.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes NS88.2]
gi|379982094|emb|CCG26588.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
pyogenes NS88.2]
Length = 296
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ + YTV++ I L + E V+ + + I+ ++ + + K
Sbjct: 31 IKQGLVLVNGQQKKAKYTVQAGDVICFELPKEE--VLEYQAQNILLDIIYEDDALAIINK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ + VHR+D+ SGLL++A+ +
Sbjct: 89 PQGMVVHPSAGHPSGTMVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKTDAAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
++++A K +++Y+A V+G P +++ I + + A + KGK
Sbjct: 149 QALAEELKAKKSLRKYLAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+FT + G +S+V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 201 EAVTRFTVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|386316769|ref|YP_006012933.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
gi|323127056|gb|ADX24353.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 297
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMAWDV--SILQKEPDVLTVCKPP 158
+K G + V+ + YTV++ I L + E A D+ +I+ ++ + + KP
Sbjct: 31 IKQGLVLVNGQQKKAKYTVQAGDVIQFELPKEEVLEYQAQDIPLNIIYEDEALAIINKPQ 90
Query: 159 SVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V L DL+ + VHR+D+ SGLL++A+
Sbjct: 91 GMVVHPSAGHPSGTMVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKTDEAHQA 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+++A K +++Y+A V+G P +++ I + + A + KGK A
Sbjct: 151 LAAELKAKKSLRKYLAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGKEA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+FT + G +S+V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 203 VTRFTVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|375256746|ref|YP_005015913.1| RluA family pseudouridine synthase [Tannerella forsythia ATCC
43037]
gi|363408630|gb|AEW22316.1| pseudouridine synthase, RluA family [Tannerella forsythia ATCC
43037]
Length = 362
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 111/231 (48%), Gaps = 21/231 (9%)
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLH--RHEPPVMAWDV--SILQKEPDVLTVC 155
A + G I +D + V +Y VK S IS + RHE ++ D+ I+ ++ D+L V
Sbjct: 68 QAAEAGCILIDGQPVKSNYRVKPSDVISIVMAYPRHETEIVPEDIPLDIVYEDEDLLIVN 127
Query: 156 KPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP--------VHRLDRLVSGLLILARN-A 206
KP + VHP T+V L P + VHR+D+ SGLL++A+
Sbjct: 128 KPAGLVVHPGHGNYTGTLVNALAFHFKDHPYYDPSDPRLGLVHRIDKDTSGLLVIAKKPE 187
Query: 207 SKADLFRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTP 265
+K DL RQ K +R Y+A G+ E E ++ NI + D
Sbjct: 188 AKTDLGRQFF--NKTTQRNYVALTWGILKEDEGRIEGNIGRDVRDRLKMCVFPDGE---- 241
Query: 266 LKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+GK A T + + G S+V C TGRTHQIRVH+++ GYP+ ND Y
Sbjct: 242 -QGKPAVTHYRVLERLGYVSLVECRLETGRTHQIRVHMKHLGYPVFNDARY 291
>gi|344174198|emb|CCA85980.1| ribosomal large subunit pseudouridine synthase C [Ralstonia syzygii
R24]
Length = 346
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 113/254 (44%), Gaps = 28/254 (11%)
Query: 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV- 137
G+ I + KG P + ++ G ++V++ + Y +K + PP+
Sbjct: 36 GQRIDNFLMRLAKGVPKSHIYRILRSGEVRVNKGRIDAEYRLKLGDLVR------IPPLR 89
Query: 138 ---------------MAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHD 182
A + +IL ++ +L + KP V VH + + Q+ +
Sbjct: 90 IAQQSAQQAEAARAVPAAEFTILHEDTHLLVIDKPAGVAVHGGSGVAFGVIEQLRQSRPE 149
Query: 183 LAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDV 242
L VHRLDR SG+L+LA+ S +QI G++ KRY A V G++P Q
Sbjct: 150 AKFLELVHRLDRETSGVLLLAKKRSALVALHEQIREGQLDKRYFAAVKGLWPHQRQ---- 205
Query: 243 NINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVH 302
+ A + T G+ G+ + T F ++ G ++++ E TGRTHQIRVH
Sbjct: 206 --HIKAPLFKYTTPEGERRVRVQADGQPSHTVFNKVGVFGPYTLLEAELKTGRTHQIRVH 263
Query: 303 LQYTGYPIANDMLY 316
L + G+PI D Y
Sbjct: 264 LAHAGFPILGDDKY 277
>gi|408401446|ref|YP_006859409.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
dysgalactiae subsp. equisimilis RE378]
gi|407967674|dbj|BAM60912.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
dysgalactiae subsp. equisimilis RE378]
Length = 297
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMAWDV--SILQKEPDVLTVCKPP 158
+K G + V+ + YTV++ I L + E A D+ +I+ ++ + + KP
Sbjct: 31 IKQGLVLVNGQQKKAKYTVQAGDVIQFELPKEEVLEYQAQDIPLNIIYEDEALAIINKPQ 90
Query: 159 SVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V L DL+ + VHR+D+ SGLL++A+
Sbjct: 91 GMVVHPSAGHPSGTMVNALMYHIKDLSSINGVVRPGIVHRIDKGTSGLLMVAKTDEAHQA 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+++A K +++Y+A V+G P +++ I GRS + T KGK A
Sbjct: 151 LAAELKAKKSLRKYLAIVHGNLPNDRGMIEAPI------GRSEKDRKKQAVIT--KGKEA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+FT + G +S+V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 203 VTRFTVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|444352050|ref|YP_007388194.1| Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) ##
LSU Psi955, Psi2504 and Psi2580 [Enterobacter aerogenes
EA1509E]
gi|443902880|emb|CCG30654.1| Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) ##
LSU Psi955, Psi2504 and Psi2580 [Enterobacter aerogenes
EA1509E]
Length = 331
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ V Y V+ +++
Sbjct: 32 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEDGDEVRIPPVRVAERE 91
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 92 EEAVSPHLQKVAALSDVILYEDEHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 151
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 152 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHTKVVQAPLLK 211
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 212 N------ILQSGERIVRVSQEGKPSETRFKVEERYPFATLVRCSPVTGRTHQIRVHTQYA 265
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 266 GHPIAFDDRY 275
>gi|339494688|ref|YP_004714981.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
gi|386021348|ref|YP_005939372.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri DSM 4166]
gi|327481320|gb|AEA84630.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri DSM 4166]
gi|338802060|gb|AEJ05892.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
Length = 317
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 119/264 (45%), Gaps = 17/264 (6%)
Query: 70 ISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS-- 127
I V AG+ I + + +G P ++ G ++V++ + Y +++ +
Sbjct: 13 ILEVAPELAGQRIDNFLRTQLRGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDLVRVP 72
Query: 128 --HFLHRHEPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
R EP +A + +I+ ++ ++ + KP + VH + + Q
Sbjct: 73 PLRLAERDEPEPLAQGLLERLESAIVYEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQL 132
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
D L VHRLDR SGLL++A+ S Q + V KRY+A V G + ++
Sbjct: 133 RPDAKELELVHRLDRDTSGLLMVAKKRSMLRHLHQALRGDGVDKRYMALVRGRWDTSKKQ 192
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQ 298
V + N T SG+ + + GK A T F + G ++V +P+TGRTHQ
Sbjct: 193 VSAPLLKN------TLRSGERMVEVTEDGKEALTLFRVLRRFGDFATLVEAKPVTGRTHQ 246
Query: 299 IRVHLQYTGYPIANDMLYLCEHVT 322
IRVH ++ G+ IA D Y E T
Sbjct: 247 IRVHARHAGHSIAGDSKYGDEDFT 270
>gi|228992627|ref|ZP_04152553.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
pseudomycoides DSM 12442]
gi|229006175|ref|ZP_04163861.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
Rock1-4]
gi|228755016|gb|EEM04375.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
Rock1-4]
gi|228766959|gb|EEM15596.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
pseudomycoides DSM 12442]
Length = 302
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 113/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFL-HRHEPPVMAWDVS--ILQKEPDVLTVCKPP 158
+K G + V+ + +Y VK + +I+ + E ++ D++ I ++ DVL V KP
Sbjct: 38 IKDGVVTVNGNDIKGNYKVKVNDEIAVAIPDPEELDILPEDMNLEIYYEDADVLVVNKPR 97
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V G++ DL+ + VHR+D+ SGLL++A+N +
Sbjct: 98 GMVVHPAPGHTSGTLVNGLMHHCTDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDMAHES 157
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q+ A V +RY A V+GV P + +D A GR + D GK A
Sbjct: 158 LVNQLVAKTVTRRYKAIVHGVIPHDKGTID------APIGRDKKDRQSMTVDE--NGKHA 209
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + ++V C TGRTHQIRVH++Y GYP+A D Y
Sbjct: 210 VTHFQVLERFKDFTLVECRLETGRTHQIRVHMKYIGYPLAGDPKY 254
>gi|400290128|ref|ZP_10792155.1| putative pseudouridylate synthase [Streptococcus ratti FA-1 = DSM
20564]
gi|399920919|gb|EJN93736.1| putative pseudouridylate synthase [Streptococcus ratti FA-1 = DSM
20564]
Length = 298
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 20/226 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHE----PPVMAWDVSILQKEPDVLTVCKP 157
+K G + V+ Y VK+ +++ L + E PP + I+ ++ DV V KP
Sbjct: 31 IKAGLVLVNGRAQKSKYAVKAGDIVTYELPQEEILDCPP-QDLPLDIIYEDADVAVVNKP 89
Query: 158 PSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKAD 210
+ VHP + T+V +L DL+ + VHR+D+ SGLL++A+N
Sbjct: 90 QGMVVHPSAGHPSGTLVNALLFHIKDLSTINGVVRPGIVHRIDKDTSGLLMIAKNDRAHQ 149
Query: 211 LFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKA 270
+++ K +++Y+A V+G P V++ I + + A + KGK
Sbjct: 150 FLADELKEKKSLRQYLAIVHGNLPNDRGVIEAPIGRSDKDRKKQAVTA--------KGKP 201
Query: 271 ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F + G +++V TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 202 ALTHFQVVEHLGDYTLVKLTLETGRTHQIRVHMAYIGHPLAGDPLY 247
>gi|251782204|ref|YP_002996506.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|417752365|ref|ZP_12400577.1| pseudouridine synthase, RluA family [Streptococcus dysgalactiae
subsp. equisimilis SK1249]
gi|242390833|dbj|BAH81292.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|333771893|gb|EGL48794.1| pseudouridine synthase, RluA family [Streptococcus dysgalactiae
subsp. equisimilis SK1249]
Length = 297
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMAWDV--SILQKEPDVLTVCKPP 158
+K G + V+ + YTV++ I L + E A D+ +I+ ++ + + KP
Sbjct: 31 IKQGLVLVNGQQKKAKYTVQAGDVIQFELPKEEVLEYQAQDIPLNIIYEDEALAIINKPQ 90
Query: 159 SVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V L DL+ + VHR+D+ SGLL++A+
Sbjct: 91 GMVVHPSAGHPSGTMVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKTDEAHQA 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+++A K +++Y+A V+G P +++ I + + A + KGK A
Sbjct: 151 LAAELKAKKSLRKYLAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGKEA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+FT + G +S+V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 203 VTRFTVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|417643748|ref|ZP_12293778.1| pseudouridine synthase, RluA family [Staphylococcus warneri VCU121]
gi|330685506|gb|EGG97159.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU121]
Length = 305
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTV 154
+K ++V++++V +Y VK + I E V+ D++ I ++ DV V
Sbjct: 38 IKEDLVKVNDKVVKPNYKVKQNDNIV----VTEQEVVEADITPENLNLDIFYEDDDVAIV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ +L+ + VHR+D SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTGTLVNGLMYQIKNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDI 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ A V ++YIA V+G P VD I N ++ A D
Sbjct: 154 AHRGLVEQLMAKSVKRKYIALVHGNIPHDYGTVDAPIGRNKKDRQAMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + ++++ CE TGRTHQIRVH++Y G+P+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLIECELETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|294501002|ref|YP_003564702.1| pseudouridine synthase [Bacillus megaterium QM B1551]
gi|294350939|gb|ADE71268.1| pseudouridine synthase [Bacillus megaterium QM B1551]
Length = 304
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 112/225 (49%), Gaps = 17/225 (7%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKIS-HFLHRHEPPVMA--WDVSILQKEPDVLTVCKPP 158
+K G +V+++ V +Y K+ I E V+A D+ I ++ DVL V KP
Sbjct: 37 IKEGHAKVNDKTVKGNYKCKTGDAIIIEVPELEELDVVAEEMDLDIYYEDQDVLVVNKPR 96
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V G++ DL+ + VHR+D+ SGLL++A+N +
Sbjct: 97 GMVVHPAPGHHSGTLVNGLMAHCKDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDLAHES 156
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q+ A V +RY A V+GV +D A GR + S+ T + A
Sbjct: 157 LVSQLVAKTVTRRYKAIVHGVIAHDHGTID------APIGRDKQDR-QSMTVTDENSRDA 209
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T FT + S+V C+ TGRTHQIRVH++Y G+P+A D Y
Sbjct: 210 VTHFTVLQRFKDFSLVECKLETGRTHQIRVHMKYIGFPLAGDPKY 254
>gi|256384025|gb|ACU78595.1| ribosomal large subunit pseudouridine synthase D [Mycoplasma
mycoides subsp. capri str. GM12]
gi|256384857|gb|ACU79426.1| ribosomal large subunit pseudouridine synthase D [Mycoplasma
mycoides subsp. capri str. GM12]
gi|296455719|gb|ADH21954.1| ribosomal large subunit pseudouridine synthase D [synthetic
Mycoplasma mycoides JCVI-syn1.0]
Length = 310
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 99/187 (52%), Gaps = 14/187 (7%)
Query: 141 DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLD 193
D+ I+ ++ D+L + K ++ VHP NT+V +L ++ +L+ L P VHR+D
Sbjct: 82 DLDIIYQDDDLLVINKQNNITVHPSLSNTNNTIVNALLASDVELSSINGELRPGIVHRID 141
Query: 194 RLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRS 253
+ +GLLI+A+N L + + ++ K Y+A V+GV + ++D A GRS
Sbjct: 142 KQTTGLLIVAKNDKTHKLLSEMFKNHQIYKEYLAIVSGVIKPNKGLID------APIGRS 195
Query: 254 TAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
+ + T K A T F + +++V C+ TGRTHQIRVH Y +P+ ND
Sbjct: 196 QIDRK-KMSVTAKNSKQAITTFEVVERFLKNTLVKCQIQTGRTHQIRVHFNYINHPVLND 254
Query: 314 MLYLCEH 320
+Y +H
Sbjct: 255 PVYGKKH 261
>gi|37526730|ref|NP_930074.1| 23S rRNA pseudouridylate synthase C [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36786162|emb|CAE15214.1| ribosomal large subunit pseudouridine synthase C (pseudouridylate
synthase) (uracil hydrolyase) [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 319
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 118/260 (45%), Gaps = 18/260 (6%)
Query: 68 EFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS 127
+F++ + + AG+ + + KG P V+ G +++++ + Y + + +
Sbjct: 9 QFVT-IDDDEAGQRVDNFLLARLKGVPKSMIYRIVRKGEVRINKGRIKPEYKLSAGDVVR 67
Query: 128 ----HFLHRHEPPV-------MAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGI 176
R PV A D IL ++ +L + KP VH + G+
Sbjct: 68 IPPVRVAERQAVPVSAKLDKVAALDDCILYEDDHILVLNKPAGTAVHGGSGLSFGVIEGL 127
Query: 177 LQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEG 236
+ L VHRLDR SG+L++A+ S +Q+ ++ K Y+A V G +P
Sbjct: 128 RVLRPEAKFLELVHRLDRDTSGILLIAKKRSALRALHEQLRLKQMQKDYLALVRGQWPSH 187
Query: 237 EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRT 296
+VV A ++ +SG+ + +GK + T+F ++V P+TGRT
Sbjct: 188 CKVV------QAPLLKNILQSGERIVKVNSEGKPSETRFKVEERFANATLVKASPVTGRT 241
Query: 297 HQIRVHLQYTGYPIANDMLY 316
HQIRVH QY G+PIA D Y
Sbjct: 242 HQIRVHTQYAGHPIAFDNRY 261
>gi|170720703|ref|YP_001748391.1| RluA family pseudouridine synthase [Pseudomonas putida W619]
gi|169758706|gb|ACA72022.1| pseudouridine synthase, RluA family [Pseudomonas putida W619]
Length = 333
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ V Y +++ + R
Sbjct: 36 AGQRIDNFLITALKGVPRTLVYRILRKGEVRVNKGRVKPEYKIQAGDIVRVPPVRLPERD 95
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ + KP + VH + + Q D L
Sbjct: 96 EPAPVAQGLLQRLEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQLRPDAKELE 155
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SGLL++A+ S + V KRY+A V G +P ++ V N
Sbjct: 156 LVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWPTSKKQV------N 209
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQYT 306
A +S SG+ + + +GK A T F + G +IV PITGRTHQIRVH +
Sbjct: 210 APLLKSNLRSGERMVEVNDEGKEALTLFRVLRRFGEFATIVEARPITGRTHQIRVHTLHA 269
Query: 307 GYPIANDMLY 316
G+ IA D Y
Sbjct: 270 GHMIAGDSKY 279
>gi|67924151|ref|ZP_00517595.1| Pseudouridine synthase, RluD [Crocosphaera watsonii WH 8501]
gi|67854003|gb|EAM49318.1| Pseudouridine synthase, RluD [Crocosphaera watsonii WH 8501]
Length = 302
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 119/246 (48%), Gaps = 6/246 (2%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHR 132
+K AG T+++ + + + Y ++ + G++ VDE+ V +K+ Q++S+
Sbjct: 11 IKQNHAGLTLIEYYTKHYHHSNYQQWLERIISGQVLVDEQTVDPQTVLKTGQRLSYHRPP 70
Query: 133 HEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRL 192
+ P + I+ ++ ++L V KP +PV P G + ++T++ L+ ++ P+HRL
Sbjct: 71 WQEPEVPLSFEIIYEDDNLLIVNKPSGLPVLPGGGFLEHTLLWQLKKQYPQNEPIPIHRL 130
Query: 193 DRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGR 252
R SGL+++ ++A QQ+ K+ K Y + G+ + + + G+
Sbjct: 131 GRGTSGLMLMGKSAIARSHLTQQMREQKISKVYQGLI------GKNNLPDKFSIDHPIGK 184
Query: 253 STAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAN 312
+ + GK A ++ + +++ +TGR HQIR+HL GYP+
Sbjct: 185 IPDPVLGYIYGAKVDGKYAYSECRVLGRYVDKTLLEVTILTGRPHQIRIHLATIGYPLLG 244
Query: 313 DMLYLC 318
D LY+
Sbjct: 245 DPLYVV 250
>gi|421504524|ref|ZP_15951465.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
mendocina DLHK]
gi|400344482|gb|EJO92851.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
mendocina DLHK]
Length = 317
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 127/280 (45%), Gaps = 20/280 (7%)
Query: 77 WAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHR 132
+AG+ I + + KG P ++ G ++V++ + Y +++ + R
Sbjct: 20 FAGQRIDNFLRTQLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDIVRVPPLRLAER 79
Query: 133 HEPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
EP +A + +I+ ++ ++ + KP + VH + Q D L
Sbjct: 80 DEPEPVAQGLLERLEAAIVYEDKALIVLNKPAGIAVHGGSGLNYGVIEAFRQLRPDAKDL 139
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SGLL++A+ S + + V KRY+A V G + ++ V
Sbjct: 140 ELVHRLDRDTSGLLMIAKKRSMLRHLHEALRGDGVDKRYMALVRGHWATAKKQV------ 193
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
NA +S SG+ + + +GK A T F + G ++V +P+TGRTHQIRVH ++
Sbjct: 194 NAPLQKSNLRSGERMVEVDGEGKEALTLFRVLRRFGDFATLVEAKPVTGRTHQIRVHAKH 253
Query: 306 TGYPIANDMLYLCEHVTH--RE-GMSADRAAAYSHHSPPP 342
G+ IA D Y + T RE G AY H P P
Sbjct: 254 AGHCIAGDSKYGDDDFTREIRELGGKRLFLHAYELHVPLP 293
>gi|331703570|ref|YP_004400257.1| ribosomal large subunit pseudouridylatesynthase D [Mycoplasma
mycoides subsp. capri LC str. 95010]
gi|328802125|emb|CBW54279.1| Ribosomal large subunit pseudouridylatesynthase D [Mycoplasma
mycoides subsp. capri LC str. 95010]
Length = 310
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 14/187 (7%)
Query: 141 DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLD 193
D+ I+ ++ D+L + K ++ VHP NT+V +L ++ +L+ L P VHR+D
Sbjct: 82 DLDIVYQDDDLLVINKQNNITVHPSLNNTNNTIVNALLASDVELSSINGELRPGIVHRID 141
Query: 194 RLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRS 253
+ +GLLI+A+N L + + ++ K Y+A V GV + ++D A GRS
Sbjct: 142 KQTTGLLIVAKNDKTHKLLSEMFKNHQIYKEYLAIVTGVIKPNKGLID------APIGRS 195
Query: 254 TAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
+ + T K A T F + +++V C+ TGRTHQIRVH Y +P+ ND
Sbjct: 196 QTDRK-KMSVTAKNSKQAITTFEVVERFLKNTLVKCQIQTGRTHQIRVHFNYINHPVLND 254
Query: 314 MLYLCEH 320
+Y +H
Sbjct: 255 PVYGKKH 261
>gi|384045145|ref|YP_005493162.1| RNA pseudouridine synthase ylyB [Bacillus megaterium WSH-002]
gi|345442836|gb|AEN87853.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
megaterium WSH-002]
Length = 304
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 112/225 (49%), Gaps = 17/225 (7%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQK-ISHFLHRHEPPVMA--WDVSILQKEPDVLTVCKPP 158
+K G +V+++ V +Y K+ I E V+A D+ I ++ DVL V KP
Sbjct: 37 IKEGHAKVNDKTVKGNYKCKTGDAVIIEVPELEELDVVAEEMDLDIYYEDQDVLVVNKPR 96
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V G++ DL+ + VHR+D+ SGLL++A+N +
Sbjct: 97 GMVVHPAPGHHSGTLVNGLMAHCKDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDLAHES 156
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q+ A V +RY A V+GV +D A GR + S+ T + A
Sbjct: 157 LVSQLVAKTVTRRYKAIVHGVIAHDHGTID------APIGRDKQDR-QSMTVTDENSRDA 209
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T FT + S+V C+ TGRTHQIRVH++Y G+P+A D Y
Sbjct: 210 VTHFTVLQRFKDFSLVECKLETGRTHQIRVHMKYIGFPLAGDPKY 254
>gi|288936150|ref|YP_003440209.1| pseudouridine synthase [Klebsiella variicola At-22]
gi|290510796|ref|ZP_06550166.1| ribosomal large subunit pseudouridine synthase C [Klebsiella sp.
1_1_55]
gi|288890859|gb|ADC59177.1| pseudouridine synthase, RluA family [Klebsiella variicola At-22]
gi|289777512|gb|EFD85510.1| ribosomal large subunit pseudouridine synthase C [Klebsiella sp.
1_1_55]
Length = 331
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ V Y V+ +++
Sbjct: 32 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEAGDEVRIPPVRVAERE 91
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 92 EEAVSPHLQKVAALSEVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 151
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 152 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQAPLLK 211
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 212 N------ILQSGERIVRVSQEGKPSETRFKVEERYEFATLVRCSPVTGRTHQIRVHTQYA 265
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 266 GHPIAFDDRY 275
>gi|399521345|ref|ZP_10762085.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399110583|emb|CCH38644.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 332
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 114/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + + KG P ++ G ++V++ + Y +++ + R
Sbjct: 36 AGQRIDNFLRTQLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDVVRVPPLRLAERD 95
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ + KP + VH + Q D L
Sbjct: 96 EPEPLAQGLLQRLEAAIVYEDKALIVLNKPAGIAVHGGSGLNYGVIEAFRQLRPDAKDLE 155
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SGLL++A+ S + + V KRY+A V G + ++ +
Sbjct: 156 LVHRLDRDTSGLLMIAKKRSMLRHLHEALRGDGVDKRYMALVRGHWATAKKQI------A 209
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQYT 306
A +S SG+ + + +GK A T F + G ++V PITGRTHQIRVH QY
Sbjct: 210 APLLKSNLRSGERMVEVNPEGKEALTVFRVLRRFGEFATLVEARPITGRTHQIRVHAQYA 269
Query: 307 GYPIANDMLY 316
G+ IA D Y
Sbjct: 270 GHGIAGDSKY 279
>gi|406920680|gb|EKD58701.1| hypothetical protein ACD_56C00067G0003 [uncultured bacterium]
Length = 316
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 133/290 (45%), Gaps = 23/290 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKI--SHFLHRHEP 135
AG I A+EF +K G + V+ + + SY ++ + F E
Sbjct: 11 AGGRIDKFLAKEFFLYSRVDINKRIKRGEVLVNNKKIKPSYVLEEGNTVMLKDFSREEED 70
Query: 136 PVMAWD----VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE-------HDL- 183
+ + + ++ + D++ V K + VHP +KNT+V L A HD
Sbjct: 71 KSLFANKELALEVIFENEDMVVVNKEAGIQVHPSFNEKKNTLVNSLLAHYPEIINVHDGS 130
Query: 184 --APLFP--VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
A L P VHRLD+ SG++++ARN + + ++ + V K+Y+A G+F E E V
Sbjct: 131 VGAELRPGIVHRLDKDTSGVIVVARNMNAFNALKENFKNRNVEKQYLAIAKGIFKEKEGV 190
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
+D I ++S + + +T + A T F +++V +P TGRTHQI
Sbjct: 191 IDKPIAKSSSYRKQVI----ARNNTKTIIRPAETHFKVTEEFDEYALVEVKPKTGRTHQI 246
Query: 300 RVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHHSPPPVSSDKSE 349
R+HL G+PI DM+Y + V A+R ++H + +K E
Sbjct: 247 RIHLASIGHPIVGDMVYGTD-VQKNAKKEAERQLLHAHELKFVLFGEKYE 295
>gi|343525010|ref|ZP_08761966.1| pseudouridine synthase, RluA family [Streptococcus constellatus
subsp. pharyngis SK1060 = CCUG 46377]
gi|343396882|gb|EGV09418.1| pseudouridine synthase, RluA family [Streptococcus constellatus
subsp. pharyngis SK1060 = CCUG 46377]
Length = 298
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G+I V+ ++ Y VK+ I++ L EP + + + I+ ++ DV V K
Sbjct: 31 IKSGQILVNGQVKKAKYAVKAGDVITYELP--EPETLEYVSENLPLDIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
+ VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 AQGMVVHPSAGHTSGTLVNALMYHIEDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 IKLADELKTKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAITRFHVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDGVY 247
>gi|421490625|ref|ZP_15937996.1| pseudouridine synthase, RluA family [Streptococcus anginosus
SK1138]
gi|400372886|gb|EJP25822.1| pseudouridine synthase, RluA family [Streptococcus anginosus
SK1138]
Length = 298
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G+I V+ ++ Y VK+ I++ L EP + + + I+ ++ DV V K
Sbjct: 31 IKNGQILVNGQVKKAKYAVKAGDVITYELP--EPEALEYVAENLPLDIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
+ VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 AQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
++++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 IKLAEELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|65321221|ref|ZP_00394180.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Bacillus
anthracis str. A2012]
gi|229600532|ref|YP_002868128.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0248]
gi|270000606|ref|YP_003329045.1| ribosomal large subunit pseudouridine synthase [Bacillus anthracis
str. Ames]
gi|291612221|ref|YP_003541035.1| ribosomal large subunit pseudouridine synthase [Bacillus anthracis
str. 'Ames Ancestor']
gi|224552855|gb|ACN55066.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. 'Ames Ancestor']
gi|229264940|gb|ACQ46577.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0248]
gi|269850243|gb|ACZ49983.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Ames]
Length = 302
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 121/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV--KCGRIQVDE-----------EMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + + R QV + + V +Y V+ + +I+ +
Sbjct: 10 AEEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAVKGNYKVRENDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ I ++ DVL V KP S+ VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEIYYEDADVLVVNKPRSMVVHPAPGHTSGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A R E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIARDKKERQSMTVDE--NGKHAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|28211276|ref|NP_782220.1| ribosomal large subunit pseudouridine synthase D [Clostridium
tetani E88]
gi|28203716|gb|AAO36157.1| ribosomal large subunit pseudouridine synthase D [Clostridium
tetani E88]
Length = 307
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 19/245 (7%)
Query: 83 VDLF-AEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA-- 139
+DLF E K + + I V++E+ V+Y VK + L + E +
Sbjct: 19 LDLFIVENLKDKSRSFIKKLSDDKGIMVNDEIKKVNYKVKCGDIVKVLLPKEEGIYLEKE 78
Query: 140 -WDVSILQKEPDVLTVCKPPSVPVHP-CGQYRKNTVVGILQAEHDLAPL------FPVHR 191
D++IL ++ D++ + KP + VHP G + V G+L L+ + VHR
Sbjct: 79 NMDLNILYEDEDIIVINKPQGMVVHPGVGNTKGTLVNGLLAHCKSLSNINGEERPGIVHR 138
Query: 192 LDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAG 251
+D+ SG+L++A+ + Q++ +++ Y+A GV E +D ++ N S
Sbjct: 139 IDKDTSGILVIAKTNRAHEHLANQLKDHSMLRVYMALTEGVIKEDMGTIDKDLGRNPSDR 198
Query: 252 RSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIA 311
A + GK A T + I+ +S++ C TGRTHQIRVH+ Y G+PI
Sbjct: 199 IKFAVVDE--------GKRAVTHYKVINRYNNNSLIECRLETGRTHQIRVHMSYIGHPIV 250
Query: 312 NDMLY 316
D Y
Sbjct: 251 GDPTY 255
>gi|421616810|ref|ZP_16057812.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri KOS6]
gi|421617298|ref|ZP_16058292.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri KOS6]
gi|409780796|gb|EKN60413.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri KOS6]
gi|409781291|gb|EKN60893.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri KOS6]
Length = 537
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 119/264 (45%), Gaps = 17/264 (6%)
Query: 70 ISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS-- 127
I V AG+ I + + +G P ++ G ++V++ + Y +++ +
Sbjct: 13 ILEVAPELAGQRIDNFLRTQLRGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDLVRVP 72
Query: 128 --HFLHRHEPPVMAWDV------SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
R EP +A + +I+ ++ ++ + KP + VH + + Q
Sbjct: 73 PLRLAERDEPEPLAQGLLERLEKAIVHEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQL 132
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
D L VHRLDR SGLL++A+ S Q + V KRY+A V G + ++
Sbjct: 133 RPDARELELVHRLDRDTSGLLMVAKKRSMLRHLHQALRGDGVDKRYMALVRGRWETSKKQ 192
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQ 298
V + N T SG+ + + GK A T F + G ++V +P+TGRTHQ
Sbjct: 193 VSAPLLKN------TLRSGERMVEVTEDGKEALTLFRVLRRFGDFATLVEAKPVTGRTHQ 246
Query: 299 IRVHLQYTGYPIANDMLYLCEHVT 322
IRVH ++ G+ IA D Y E T
Sbjct: 247 IRVHARHAGHSIAGDSKYGDEEFT 270
>gi|300691996|ref|YP_003752991.1| ribosomal large subunit pseudouridine synthase C [Ralstonia
solanacearum PSI07]
gi|299079056|emb|CBJ51718.1| Ribosomal large subunit pseudouridine synthase C [Ralstonia
solanacearum PSI07]
Length = 346
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 113/254 (44%), Gaps = 28/254 (11%)
Query: 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV- 137
G+ I + KG P + ++ G ++V++ + Y +K + PP+
Sbjct: 36 GQRIDNFLMRLAKGVPKSHIYRILRSGEVRVNKGRIDAEYRLKLGDLVR------IPPLR 89
Query: 138 ---------------MAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHD 182
A + +IL ++ +L + KP V VH + + Q+ +
Sbjct: 90 IAQQSAQQAEAARAVPAAEFTILHEDTHLLVIDKPAGVAVHGGSGVAFGVIEQLRQSRPE 149
Query: 183 LAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDV 242
L VHRLDR SG+L+LA+ S +QI G++ KRY A V G++P Q
Sbjct: 150 AKFLELVHRLDRETSGVLLLAKKRSALVALHEQIREGQLDKRYFAAVKGLWPHQRQ---- 205
Query: 243 NINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVH 302
+ A + T G+ G+ + T F ++ G ++++ E TGRTHQIRVH
Sbjct: 206 --HIKAPLFKYTTPEGERRVRVQADGQPSHTVFNKVGVFGPYTLLEAELKTGRTHQIRVH 263
Query: 303 LQYTGYPIANDMLY 316
L + G+PI D Y
Sbjct: 264 LAHAGFPILGDDKY 277
>gi|315221340|ref|ZP_07863261.1| pseudouridine synthase, RluA family [Streptococcus anginosus F0211]
gi|315189459|gb|EFU23153.1| pseudouridine synthase, RluA family [Streptococcus anginosus F0211]
Length = 298
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G+I V+ ++ Y VK+ I++ L EP + + + I+ ++ DV V K
Sbjct: 31 IKNGQILVNGQVKKAKYAVKAGDVITYELP--EPEALEYVAENLPLDIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
+ VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 AQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
++++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 IKLAEELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|395444678|ref|YP_006384931.1| RluA family pseudouridine synthase [Pseudomonas putida ND6]
gi|388558675|gb|AFK67816.1| RluA family pseudouridine synthase [Pseudomonas putida ND6]
Length = 333
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ V Y +++ + R
Sbjct: 36 AGQRIDNFLITALKGVPKTLVYRILRKGEVRVNKGRVKPEYKIQAGDIVRVPPVRLPERD 95
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ + KP + VH + + Q D L
Sbjct: 96 EPAPVAQGLLQRLEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQLRPDAKELE 155
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SGLL++A+ S + V KRY+A V G +P ++ V N
Sbjct: 156 LVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWPTSKKQV------N 209
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQYT 306
A +S SG+ + + +GK A T F + G +IV PITGRTHQIRVH +
Sbjct: 210 APLLKSNLRSGERMVEVNDEGKEALTLFRVLRRFGDFATIVEARPITGRTHQIRVHTLHA 269
Query: 307 GYPIANDMLY 316
G+ IA D Y
Sbjct: 270 GHMIAGDSKY 279
>gi|423107796|ref|ZP_17095491.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5243]
gi|376386529|gb|EHS99240.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5243]
Length = 345
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ V Y V+ ++K
Sbjct: 46 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEAGDEVRIPPVRVAEKE 105
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 106 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 165
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 166 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQAPLLK 225
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 226 N------ILQSGERIVRVNQEGKPSETRFKVEERYPHATLVRCSPVTGRTHQIRVHTQYA 279
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 280 GHPIAFDDRY 289
>gi|344170617|emb|CCA83039.1| ribosomal large subunit pseudouridine synthase C [blood disease
bacterium R229]
Length = 331
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 113/254 (44%), Gaps = 28/254 (11%)
Query: 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV- 137
G+ I + KG P + ++ G ++V++ + Y +K + PP+
Sbjct: 21 GQRIDNFLMRLAKGVPKSHIYRILRSGEVRVNKGRIDAEYRLKLGDLVR------IPPLR 74
Query: 138 ---------------MAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHD 182
A + +IL ++ +L + KP V VH + + Q+ +
Sbjct: 75 IAQQSAQQAEAARAVPAAEFTILHEDTHLLVIDKPAGVAVHGGSGVAFGVIEQLRQSRPE 134
Query: 183 LAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDV 242
L VHRLDR SG+L+LA+ S +QI G++ KRY A V G++P Q
Sbjct: 135 AKFLELVHRLDRETSGVLLLAKKRSALVALHEQIREGQLDKRYFAAVKGLWPHQRQ---- 190
Query: 243 NINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVH 302
+ A + T G+ G+ + T F ++ G ++++ E TGRTHQIRVH
Sbjct: 191 --HIKAPLFKYTTPEGERRVRVQADGQPSHTVFNKVGVFGPYTLLEAELKTGRTHQIRVH 248
Query: 303 LQYTGYPIANDMLY 316
L + G+PI D Y
Sbjct: 249 LAHAGFPILGDDKY 262
>gi|319939285|ref|ZP_08013648.1| pseudouridine synthase [Streptococcus anginosus 1_2_62CV]
gi|319811681|gb|EFW07957.1| pseudouridine synthase [Streptococcus anginosus 1_2_62CV]
Length = 298
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G+I V+ ++ Y VK+ I++ L EP + + + I+ ++ DV V K
Sbjct: 31 IKNGQILVNGQVKKAKYAVKAGDVITYELP--EPEALEYVAENLPLDIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
+ VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 AQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
++++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 IKLAEELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAVTRFHVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDEVY 247
>gi|373464369|ref|ZP_09555908.1| pseudouridine synthase, RluA family [Lactobacillus kisonensis
F0435]
gi|371762571|gb|EHO51100.1| pseudouridine synthase, RluA family [Lactobacillus kisonensis
F0435]
Length = 302
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 21/223 (9%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCKPPS 159
G I V+ E+ Y V+ KIS + EP + + + I+ ++ DV+ V KP
Sbjct: 36 GDITVNGEVKKPKYPVEIGDKIS--ISNPEPQAINLEPENIPLDIVYEDDDVIVVNKPQG 93
Query: 160 VPVHPCGQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADLFR 213
+ VHP + +T+V L L+ + VHR+D+ SGLL++A+N +
Sbjct: 94 MVVHPSAGHPNHTLVNALLFHSPLSTINGEYRPGIVHRIDKDTSGLLMVAKNDAAHKFLS 153
Query: 214 QQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACT 273
Q++ K ++RY+A V+G E VV NA GRS + + G+ A T
Sbjct: 154 SQLKKQKNLRRYVALVHGRITENSGVV------NAPIGRSLNDRKKQA--VIIDGRPAVT 205
Query: 274 KFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
F + +++V C TGRTHQIRVH++Y +PI D LY
Sbjct: 206 HFEVLERFQQYTLVSCRLETGRTHQIRVHMKYIEHPIVGDPLY 248
>gi|421872013|ref|ZP_16303633.1| pseudouridine synthase, RluA family protein [Brevibacillus
laterosporus GI-9]
gi|372459270|emb|CCF13182.1| pseudouridine synthase, RluA family protein [Brevibacillus
laterosporus GI-9]
Length = 297
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 123/254 (48%), Gaps = 20/254 (7%)
Query: 72 HVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFL- 130
H + AG+++ ++ ++++ + A G IQ++ E+ V+ V+ I+ ++
Sbjct: 9 HASEQQAGRSLREVLQKDYEI-SRKLLIRAKFSGEIQINGELAFVTRIVEVGDIITIWMD 67
Query: 131 --HRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQY----RKNTVVGILQAEHDLA 184
A D+ I ++ DVL + KPP + VHP G + N V+ Q + +
Sbjct: 68 EEESENLEPEAMDLQIRYEDEDVLVLAKPPGIVVHPTGMHVTGTLANGVIHYWQQKGERR 127
Query: 185 PLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI 244
PV RLD+ +GL+I+A+N D F + + + +RY A V+G V+D
Sbjct: 128 KFRPVSRLDKDTTGLIIIAKNQWAHDRFSRMQKNRSLKRRYQALVHGRVTPQSGVID--- 184
Query: 245 NYNASAGRSTAESGDSLGDTPLK--GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVH 302
A GR +S+ + ++ G+ A T + + + S + + TGRTHQIRVH
Sbjct: 185 ---APIGRKE----ESIIEREVRPDGQQAVTHYQVLKSTDDLSHIQLQLETGRTHQIRVH 237
Query: 303 LQYTGYPIANDMLY 316
+ Y GYP+ D LY
Sbjct: 238 MSYLGYPLLGDDLY 251
>gi|430837884|ref|ZP_19455834.1| RluA family pseudouridine synthase [Enterococcus faecium E0688]
gi|430858355|ref|ZP_19475983.1| RluA family pseudouridine synthase [Enterococcus faecium E1552]
gi|430492164|gb|ELA68578.1| RluA family pseudouridine synthase [Enterococcus faecium E0688]
gi|430545564|gb|ELA85537.1| RluA family pseudouridine synthase [Enterococcus faecium E1552]
Length = 303
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 114/229 (49%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + V+ + V +Y VK +I+ + P DV +I+ ++ DV +
Sbjct: 35 LKNGAVSVNGQPVKANYKVKQGDEITVLI----PEPETLDVVPENIPLTIVYEDEDVAVI 90
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 91 NKPQGMVVHPSAGHTHGTMVNALMYHIKDLSTINGVIRPGIVHRIDKDTSGLLMVAKNDQ 150
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ QQ++ +++Y+A V+G P + + NA GRS + +
Sbjct: 151 AHESLAQQLKDKTSLRKYVALVHGEIPHEKGTI------NAPIGRS--KENRKMQVIRED 202
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK+A T FT + ++V + TGRTHQIRVH++Y GYP+A D +Y
Sbjct: 203 GKSAVTHFTVLERFEGFTLVELKLETGRTHQIRVHMKYIGYPLAGDPVY 251
>gi|353234714|emb|CCA66736.1| related to DRAP deaminase RIB2 [Piriformospora indica DSM 11827]
Length = 510
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 29/231 (12%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G + V PY+ + + K RW + +++L + EF+ R +YY A++ G + ++ + V
Sbjct: 5 GLKKVAPYWHPYATMAKQRWWDRELLELVSTEFRDRSIEYYRFAIESGIVSINGKTAHVG 64
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQ--KEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+++ ++ + +HRHE + + V +L KE D++ + KP + C R+
Sbjct: 65 QIMRNGDRLENIIHRHE-LITSQPVKVLHVDKEKDLIVIDKPGT-----CALCRE----- 113
Query: 176 ILQAEHDLAP--------LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIA 227
+ Q + D P ++PV+RLDRL SG +++A + ++A + +G + K Y+A
Sbjct: 114 VFQEQSDRDPSNGIRIQKVYPVNRLDRLTSGCMVMALSPTRARQMCDEFMSGNIKKEYVA 173
Query: 228 RVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI 278
R G FP E V + + T + L +GK A T F RI
Sbjct: 174 RCRGEFPATEVVCEEPL--------LTIDRQMGLNIVHPEGKPAKTAFNRI 216
>gi|424780438|ref|ZP_18207311.1| Ribosomal large subunit pseudouridine synthase D [Catellicoccus
marimammalium M35/04/3]
gi|422842840|gb|EKU27287.1| Ribosomal large subunit pseudouridine synthase D [Catellicoccus
marimammalium M35/04/3]
Length = 301
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 124/248 (50%), Gaps = 24/248 (9%)
Query: 80 KTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA 139
K + +LF E + + + VK G + V+ + +Y V + +IS F + + P+ A
Sbjct: 17 KVLANLFPEYTRSKLQTW----VKEGIVTVNGKPTKSNYKVATGDQIS-FTPQEDKPLTA 71
Query: 140 ----WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQ----AEHDLAPLFP-- 188
+ I+ ++ DV+ + KP + VHP + T+V G+L +E + + P
Sbjct: 72 EPQNIPLDIIYEDEDVIVINKPQGMVVHPSPGHPDGTLVNGLLYHTQLSEMEEGTIRPGI 131
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNA 248
VHR+D+ SGLL++A+N + +Q+ +RY+A V+G + +D I +
Sbjct: 132 VHRIDKDTSGLLMVAKNNQSHESLAKQLSEKTSHRRYLAIVHGDIDHAKGKIDAPIGRDP 191
Query: 249 SAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGY 308
+ A + G+ A T F + G ++++ C+ TGRTHQIRVH+ Y G+
Sbjct: 192 KDRKKQAVIKE--------GRPAVTHFEVLERFGRYTLIACQLETGRTHQIRVHMNYIGH 243
Query: 309 PIANDMLY 316
P+A D LY
Sbjct: 244 PLAGDPLY 251
>gi|152969638|ref|YP_001334747.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|329999760|ref|ZP_08303517.1| rRNA pseudouridylate synthase [Klebsiella sp. MS 92-3]
gi|378978122|ref|YP_005226263.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|419762714|ref|ZP_14288960.1| rRNA pseudouridylate synthase [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|421909211|ref|ZP_16339033.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|425077274|ref|ZP_18480377.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425080908|ref|ZP_18484005.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425087907|ref|ZP_18491000.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|425090970|ref|ZP_18494055.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|428150126|ref|ZP_18997915.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|150954487|gb|ABR76517.1| 23S rRNA pseudouridylate synthase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|328538217|gb|EGF64365.1| rRNA pseudouridylate synthase [Klebsiella sp. MS 92-3]
gi|364517533|gb|AEW60661.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397744209|gb|EJK91421.1| rRNA pseudouridylate synthase [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|405592983|gb|EKB66435.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405604631|gb|EKB77752.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405604718|gb|EKB77825.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405613127|gb|EKB85875.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|410117055|emb|CCM81658.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|427539916|emb|CCM94053.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
Length = 331
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ V Y V+ +++
Sbjct: 32 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEAGDEVRIPPVRVAERE 91
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 92 EEAVSPHLQKVAALSEVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 151
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 152 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQAPLLK 211
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 212 N------ILQSGERIVRVSQEGKPSETRFKVEERYEFATLVRCSPVTGRTHQIRVHTQYA 265
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 266 GHPIAFDDRY 275
>gi|148549014|ref|YP_001269116.1| RluA family pseudouridine synthase [Pseudomonas putida F1]
gi|148513072|gb|ABQ79932.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
putida F1]
Length = 333
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ V Y +++ + R
Sbjct: 36 AGQRIDNFLITALKGVPKTLVYRILRKGEVRVNKGRVKPEYKIQAGDIVRVPPVRLPERD 95
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ + KP + VH + + Q D L
Sbjct: 96 EPAPVAQGLLQRLEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQLRPDAKELE 155
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SGLL++A+ S + V KRY+A V G +P ++ V N
Sbjct: 156 LVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWPTSKKQV------N 209
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQYT 306
A +S SG+ + + +GK A T F + G +IV PITGRTHQIRVH +
Sbjct: 210 APLLKSNLRSGERMVEVNDEGKEALTLFRVLRRFGDFATIVEARPITGRTHQIRVHTLHA 269
Query: 307 GYPIANDMLY 316
G+ IA D Y
Sbjct: 270 GHMIAGDSKY 279
>gi|423113768|ref|ZP_17101459.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5245]
gi|376387413|gb|EHT00123.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5245]
Length = 345
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ V Y V+ ++K
Sbjct: 46 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEAGDEVRIPPVRVAEKE 105
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 106 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 165
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 166 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQAPLLK 225
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 226 N------ILQSGERIVRVNQEGKPSETRFKVEERYPHATLVRCSPVTGRTHQIRVHTQYA 279
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 280 GHPIAFDDRY 289
>gi|423068401|ref|ZP_17057189.1| hypothetical protein HMPREF9682_00410 [Streptococcus intermedius
F0395]
gi|355366656|gb|EHG14373.1| hypothetical protein HMPREF9682_00410 [Streptococcus intermedius
F0395]
Length = 298
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 114/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K G+I V+ ++ Y VK+ I++ L EP + + + I+ ++ DV V K
Sbjct: 31 IKSGQILVNGQVKKAKYAVKAGDVITYELP--EPETLEYVSENLPLDIVYQDEDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
+ VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 89 AQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G P V++ I + + A + KGK
Sbjct: 149 IKLADELKTKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAITRFHVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDGVY 247
>gi|402781395|ref|YP_006636941.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|402542282|gb|AFQ66431.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae 1084]
Length = 308
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ V Y V+ +++
Sbjct: 9 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEAGDEVRIPPVRVAERE 68
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 69 EEAVSPHLQKVAALSEVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 128
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 129 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQAPLLK 188
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 189 N------ILQSGERIVRVSQEGKPSETRFKVEERYEFATLVRCSPVTGRTHQIRVHTQYA 242
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 243 GHPIAFDDRY 252
>gi|417787560|ref|ZP_12435243.1| ribosomal large subunit pseudouridine synthase D-like protein
[Lactobacillus salivarius NIAS840]
gi|334307737|gb|EGL98723.1| ribosomal large subunit pseudouridine synthase D-like protein
[Lactobacillus salivarius NIAS840]
Length = 304
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 11/188 (5%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP--VHRLDRLVSGL 199
+ I+ + D+L V KP + HP Y T++ + D+ P VHRLD L SG
Sbjct: 86 IPIIFENEDLLVVNKPQGIKSHPNQPYETGTLMNYIAGYLDVKDEHPYMVHRLDMLTSGA 145
Query: 200 LILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGD 259
+I+A+N+ + + I + + Y+A G+F + E V+D+ I + + R D
Sbjct: 146 MIVAKNSVVVPVLTRLISTHTIKRDYLAVTEGIFDQKEGVIDLPIGKDENDKRK--RKVD 203
Query: 260 SLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCE 319
+G P A T + I G +S+V TGRTHQ+RVHL G+PI D+LY
Sbjct: 204 GIGALP-----ARTHYQVIKEFGNNSVVYLRLETGRTHQLRVHLSAMGHPIVGDVLY--N 256
Query: 320 HVTHREGM 327
HV+ + M
Sbjct: 257 HVSEEKHM 264
>gi|449915303|ref|ZP_21796193.1| putative pseudouridylate synthase [Streptococcus mutans 15JP3]
gi|449156769|gb|EMB60228.1| putative pseudouridylate synthase [Streptococcus mutans 15JP3]
Length = 296
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-------VSILQKEPDVLTV 154
+K G + V+ + Y VK +H P D + I+ ++ DV +
Sbjct: 31 IKAGLVWVNGKTQKAKYAVKEGD----IIHYERPQEEVLDCVAQNIPLEIVYEDEDVAVI 86
Query: 155 CKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V +L DL+ + VHR+D+ SGLL++A+N
Sbjct: 87 NKPQGMVVHPSVGHHSGTLVNALLFHIKDLSSINGVIRPGIVHRIDKDTSGLLMIAKNDQ 146
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
++++ K +++YIA V+G P V++ A GRS E K
Sbjct: 147 AHQALAKELKEKKSLRQYIALVHGNLPNDRGVIE------APIGRS--EKDRKKQTVTAK 198
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + G +S+V TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 199 GKPAVTHFKVLERFGQYSLVELTLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|366088576|ref|ZP_09455049.1| ribosomal large subunit pseudouridine synthase [Lactobacillus
acidipiscis KCTC 13900]
Length = 300
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 108/225 (48%), Gaps = 25/225 (11%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTVCKP 157
G+I V+ + Y VK +++ +EP V D+ I+ ++ DVL V KP
Sbjct: 36 GKILVNGQQEKPRYQVKDGDQVT----INEPEVHKLDLVAQDIPLDIVYEDDDVLVVNKP 91
Query: 158 PSVPVHPCGQYRKNTVVGILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V L L+ L P VHR+DR SGLL++A+N
Sbjct: 92 AGMVVHPAPGHPDQTLVNALLYHCPLSKINGTLRPGIVHRIDRDTSGLLMVAKNDHAHHS 151
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
QQ++ I+ YIA V+G+ E V NA RS + G+ A
Sbjct: 152 LAQQLKDKTTIRYYIALVHGIIKEDHGTV------NAPLARSPKDRKKQA--VVAGGRRA 203
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + +++V C TGRTHQIRVHL+Y G+P+A D +Y
Sbjct: 204 VTHFEVLRRYQNYTLVKCRLETGRTHQIRVHLKYIGHPVAGDPVY 248
>gi|336249748|ref|YP_004593458.1| 23S rRNA pseudouridylate synthase C [Enterobacter aerogenes KCTC
2190]
gi|334735804|gb|AEG98179.1| 23S rRNA pseudouridylate synthase C [Enterobacter aerogenes KCTC
2190]
Length = 317
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ V Y V+ +++
Sbjct: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEDGDEVRIPPVRVAERE 77
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 78 EEAVSPHLQKVAALSDVILYEDEHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 137
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 138 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHTKVVQAPLLK 197
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 198 N------ILQSGERIVRVSQEGKPSETRFKVEERYPFATLVRCSPVTGRTHQIRVHTQYA 251
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 252 GHPIAFDDRY 261
>gi|422851716|ref|ZP_16898386.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK150]
gi|325694604|gb|EGD36513.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK150]
Length = 298
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAW-----DVSILQKEPDVLTVCK 156
+K GRI V+ + Y VK IS+ L EP V+ + + I+ ++ DV V K
Sbjct: 33 IKDGRILVNGQAKKAKYAVKEGDVISYELP--EPEVVEYVAEDIPLEIVYQDEDVAVVNK 90
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 PQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAH 150
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++ K +++Y A V+G V++ I + + A + KGK
Sbjct: 151 VALADELKDKKSLRKYWAIVHGNLSNDRGVIEAPIGRSEKDRKKQAVTA--------KGK 202
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +S+V + TGRTHQIRVH+ Y +P+A D +Y
Sbjct: 203 PALTRFQVLERFGDYSLVELQLETGRTHQIRVHMAYIEHPVAGDEVY 249
>gi|295706351|ref|YP_003599426.1| pseudouridine synthase [Bacillus megaterium DSM 319]
gi|294804010|gb|ADF41076.1| pseudouridine synthase [Bacillus megaterium DSM 319]
Length = 304
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 112/225 (49%), Gaps = 17/225 (7%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKIS-HFLHRHEPPVMA--WDVSILQKEPDVLTVCKPP 158
+K G +V+++ V +Y K+ I E V+A D+ I ++ DVL V KP
Sbjct: 37 IKEGHAKVNDKTVKGNYKCKTGDAIIIEVPELEELDVVAEEMDLDIYYEDQDVLVVNKPR 96
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V G++ DL+ + VHR+D+ SGLL++A+N +
Sbjct: 97 GMVVHPAPGHHSGTLVNGLMAHCKDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDLAHES 156
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q+ A V +RY A V+G+ +D A GR + S+ T + A
Sbjct: 157 LVSQLVAKTVTRRYKAIVHGIIAHDHGTID------APIGRDKQDR-QSMTVTDENSRDA 209
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T FT + S+V C+ TGRTHQIRVH++Y G+P+A D Y
Sbjct: 210 VTHFTVLQRFKDFSLVECKLETGRTHQIRVHMKYIGFPLAGDPKY 254
>gi|227513366|ref|ZP_03943415.1| pseudouridylate synthase [Lactobacillus buchneri ATCC 11577]
gi|227524509|ref|ZP_03954558.1| pseudouridylate synthase [Lactobacillus hilgardii ATCC 8290]
gi|227083239|gb|EEI18551.1| pseudouridylate synthase [Lactobacillus buchneri ATCC 11577]
gi|227088319|gb|EEI23631.1| pseudouridylate synthase [Lactobacillus hilgardii ATCC 8290]
Length = 303
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 14/181 (7%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL------FPVHRLDRL 195
+ I+ ++ DV+ V KP + VHP + +T+V L L+ + VHR+D+
Sbjct: 77 LDIVYEDEDVIVVNKPQGMVVHPSAGHPNHTLVNALLFHSPLSSINGEYRPGIVHRIDKD 136
Query: 196 VSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTA 255
SGLL++A+N +Q++A K +++Y+A V+G E V+ I + + A
Sbjct: 137 TSGLLMVAKNDMAHKALSKQLKAKKNLRKYVALVHGRIKEDSGVIKAPIGRSPKDRKKQA 196
Query: 256 ESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
D G+ A T F + ++++ C TGRTHQIRVH+QY G+PI D L
Sbjct: 197 IVAD--------GRPAITHFEVMERFEDYTLIDCRLETGRTHQIRVHMQYIGHPIVGDPL 248
Query: 316 Y 316
Y
Sbjct: 249 Y 249
>gi|449060585|ref|ZP_21738219.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae hvKP1]
gi|448873719|gb|EMB08798.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae hvKP1]
Length = 317
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ V Y V+ +++
Sbjct: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEAGDEVRIPPVRVAERE 77
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 78 EEAVSPHLQKVAALSEVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 137
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 138 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQAPLLK 197
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 198 N------ILQSGERIVRVSQEGKPSETRFKVEERYEFATLVRCSPVTGRTHQIRVHTQYA 251
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 252 GHPIAFDDRY 261
>gi|262046428|ref|ZP_06019390.1| pseudouridine synthase [Lactobacillus crispatus MV-3A-US]
gi|260573299|gb|EEX29857.1| pseudouridine synthase [Lactobacillus crispatus MV-3A-US]
Length = 303
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 114/231 (49%), Gaps = 30/231 (12%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
VK I V+ ++ VSY +++ KI + P V DV I+ ++ DV+ V
Sbjct: 36 VKDQNILVNGKVEKVSYKIQAGDKIEVNI----PAVKPLDVIPENIPLDIVYEDDDVIVV 91
Query: 155 CKPPSVPVHPCGQYRKNTVVGIL--------QAEHDLAPLFPVHRLDRLVSGLLILARNA 206
KP + VHP + +T+V L Q+ P VHR+D+ SGLL++A+ A
Sbjct: 92 NKPQGMVVHPAPGHPDHTLVNALLYHSKALAQSPEGFRPGI-VHRIDKDTSGLLMIAKTA 150
Query: 207 SKADLFRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTP 265
+ Q+ A K KR Y A V+G F E V+D I N + A + +T
Sbjct: 151 KARESLEDQL-AHKTNKRLYWAIVHGNFAEENGVIDAPIGRNPYDRKKMA-----VVET- 203
Query: 266 LKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +S++ C+ TGRTHQIRVHL Y G+P+A D LY
Sbjct: 204 --GKKAITHFKVLEQFKDYSLIECQLETGRTHQIRVHLDYIGHPVAGDPLY 252
>gi|408356929|ref|YP_006845460.1| pseudouridine synthase RluD [Amphibacillus xylanus NBRC 15112]
gi|407727700|dbj|BAM47698.1| pseudouridine synthase RluD [Amphibacillus xylanus NBRC 15112]
Length = 304
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 19/226 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM---AWDVSILQKEPDVLTVCKPP 158
+K G + V+ V +Y V+ + ++ L E + A + I+ ++ D+L V KP
Sbjct: 37 IKSGHVTVNGSEVKANYRVQENDQVVWELPEQESIKIEPEAIPLDIIYEDDDILIVNKPK 96
Query: 159 SVPVHP-CGQYRKNTVVGILQAEHDLAPLFP------VHRLDRLVSGLLILARNASKADL 211
+ VHP G + V +L L + VHR+DR SGLLI+A+ +
Sbjct: 97 GMVVHPSVGHHSGTLVNALLHHTKQLTTINGEDRPGIVHRIDRDTSGLLIIAKTDQAYES 156
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
QQ++ + + Y+A V+G P ++ I N +S A + GK A
Sbjct: 157 LAQQLKDREAQRTYLALVHGAIPHEYGTIEAPIGRNPKDRQSMAVVNN--------GKEA 208
Query: 272 CTKFTRIS-TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F I N ++++ C TGRTHQIRVHL+Y G+PI D Y
Sbjct: 209 ITYFEVIERINQKYTLIKCSLKTGRTHQIRVHLKYIGFPIVGDPKY 254
>gi|238894120|ref|YP_002918854.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|386034265|ref|YP_005954178.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae KCTC
2242]
gi|419971779|ref|ZP_14487209.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419980866|ref|ZP_14496147.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419986072|ref|ZP_14501208.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419989690|ref|ZP_14504665.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419994890|ref|ZP_14509698.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420004008|ref|ZP_14518649.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420009714|ref|ZP_14524195.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420014687|ref|ZP_14528992.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420018943|ref|ZP_14533138.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420026701|ref|ZP_14540701.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420031484|ref|ZP_14545305.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420038265|ref|ZP_14551913.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420044304|ref|ZP_14557785.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420050192|ref|ZP_14563494.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420055617|ref|ZP_14568782.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420062616|ref|ZP_14575583.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420066125|ref|ZP_14578927.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420070777|ref|ZP_14583427.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420078973|ref|ZP_14591425.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420083276|ref|ZP_14595560.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421918594|ref|ZP_16348112.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|424830061|ref|ZP_18254789.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
gi|424934049|ref|ZP_18352421.1| Pseudouridine synthase [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|428935764|ref|ZP_19009219.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae JHCK1]
gi|428942292|ref|ZP_19015295.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae VA360]
gi|238546436|dbj|BAH62787.1| 23S rRNA pseudouridylate synthase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|339761393|gb|AEJ97613.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae KCTC
2242]
gi|397344575|gb|EJJ37707.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397349439|gb|EJJ42533.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397352717|gb|EJJ45795.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397367455|gb|EJJ60066.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397368663|gb|EJJ61268.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397369189|gb|EJJ61791.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397377703|gb|EJJ69929.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397380672|gb|EJJ72851.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397389604|gb|EJJ81537.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397394733|gb|EJJ86454.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397400353|gb|EJJ91998.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397404418|gb|EJJ95926.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397411787|gb|EJK03036.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397412071|gb|EJK03311.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397421470|gb|EJK12482.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397427635|gb|EJK18402.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397430395|gb|EJK21090.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397441281|gb|EJK31661.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397444279|gb|EJK34562.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397451367|gb|EJK41453.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|407808236|gb|EKF79487.1| Pseudouridine synthase [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|410119092|emb|CCM90737.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|414707486|emb|CCN29190.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
gi|426298944|gb|EKV61313.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae VA360]
gi|426299773|gb|EKV62091.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae JHCK1]
Length = 317
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ V Y V+ +++
Sbjct: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEAGDEVRIPPVRVAERE 77
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 78 EEAVSPHLQKVAALSEVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 137
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 138 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQAPLLK 197
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 198 N------ILQSGERIVRVSQEGKPSETRFKVEERYEFATLVRCSPVTGRTHQIRVHTQYA 251
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 252 GHPIAFDDRY 261
>gi|206577057|ref|YP_002239295.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae 342]
gi|206566115|gb|ACI07891.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae 342]
Length = 317
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ V Y V+ +++
Sbjct: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEAGDEVRIPPVRVAERE 77
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 78 EEAVSPHLQKVAALSEVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 137
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 138 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQAPLLK 197
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 198 N------ILQSGERIVRVSQEGKPSETRFKVEERYEFATLVRCSPVTGRTHQIRVHTQYA 251
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 252 GHPIAFDDRY 261
>gi|227878615|ref|ZP_03996537.1| pseudouridylate synthase [Lactobacillus crispatus JV-V01]
gi|256843219|ref|ZP_05548707.1| pseudouridine synthase [Lactobacillus crispatus 125-2-CHN]
gi|256850423|ref|ZP_05555851.1| pseudouridine synthase [Lactobacillus crispatus MV-1A-US]
gi|293380626|ref|ZP_06626679.1| pseudouridine synthase, RluA family [Lactobacillus crispatus 214-1]
gi|295692991|ref|YP_003601601.1| pseudouridine synthase [Lactobacillus crispatus ST1]
gi|312977447|ref|ZP_07789195.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
crispatus CTV-05]
gi|423318686|ref|ZP_17296563.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB049-03]
gi|227861792|gb|EEJ69389.1| pseudouridylate synthase [Lactobacillus crispatus JV-V01]
gi|256614639|gb|EEU19840.1| pseudouridine synthase [Lactobacillus crispatus 125-2-CHN]
gi|256712820|gb|EEU27813.1| pseudouridine synthase [Lactobacillus crispatus MV-1A-US]
gi|290922813|gb|EFD99762.1| pseudouridine synthase, RluA family [Lactobacillus crispatus 214-1]
gi|295031097|emb|CBL50576.1| Pseudouridine synthase [Lactobacillus crispatus ST1]
gi|310895878|gb|EFQ44944.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
crispatus CTV-05]
gi|405593417|gb|EKB66865.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB049-03]
Length = 303
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 114/231 (49%), Gaps = 30/231 (12%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
VK I V+ ++ VSY +++ KI + P V DV I+ ++ DV+ V
Sbjct: 36 VKDQNILVNGKVEKVSYKIQAGDKIEVNI----PAVKPLDVIPENIPLDIVYEDDDVIVV 91
Query: 155 CKPPSVPVHPCGQYRKNTVVGIL--------QAEHDLAPLFPVHRLDRLVSGLLILARNA 206
KP + VHP + +T+V L Q+ P VHR+D+ SGLL++A+ A
Sbjct: 92 NKPQGMVVHPAPGHPDHTLVNALLYHTKALAQSPEGFRPGI-VHRIDKDTSGLLMIAKTA 150
Query: 207 SKADLFRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTP 265
+ Q+ A K KR Y A V+G F E V+D I N + A + +T
Sbjct: 151 KARESLEDQL-AHKTNKRLYWAIVHGNFAEENGVIDAPIGRNPYDRKKMA-----VVET- 203
Query: 266 LKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +S++ C+ TGRTHQIRVHL Y G+P+A D LY
Sbjct: 204 --GKKAITHFKVLEQFKDYSLIECQLETGRTHQIRVHLDYIGHPVAGDPLY 252
>gi|430852585|ref|ZP_19470316.1| RluA family pseudouridine synthase [Enterococcus faecium E1258]
gi|430541419|gb|ELA81564.1| RluA family pseudouridine synthase [Enterococcus faecium E1258]
Length = 303
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + V+ + V +Y VK +I+ + P DV +I+ ++ DV +
Sbjct: 35 LKNGAVSVNGQPVKANYKVKQGDEITVLI----PEPETLDVGPENIPLTIVYEDEDVAVI 90
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 91 NKPQGMVVHPSAGHTHGTMVNALMYHIKDLSTINGVIRPGIVHRIDKDTSGLLMVAKNDQ 150
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ QQ++ +++Y+A V+G P + + NA GRS + +
Sbjct: 151 AHESLAQQLKDKTSLRKYVALVHGEIPHEKGTI------NAPIGRS--KENRKMQAIRED 202
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + ++V + TGRTHQIRVH++Y GYP+A D +Y
Sbjct: 203 GKPAVTHFTVLERFEGFTLVELKLETGRTHQIRVHMKYIGYPLAGDPVY 251
>gi|313901079|ref|ZP_07834567.1| pseudouridine synthase, RluA family [Clostridium sp. HGF2]
gi|373121536|ref|ZP_09535404.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
21_3]
gi|312954037|gb|EFR35717.1| pseudouridine synthase, RluA family [Clostridium sp. HGF2]
gi|371665554|gb|EHO30719.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
21_3]
Length = 304
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 117/245 (47%), Gaps = 26/245 (10%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKISHFLHRH-----EPPVMAWDVSILQKEPDVLTVCKPPS 159
G I V++ V +Y VK+ I+ + P M DV ++ DV+ + KP +
Sbjct: 39 GSILVNQNAVKANYKVKADDCITAVFNDEMEMEARPEKMELDVRY--EDEDVIVINKPKN 96
Query: 160 VPVHPCGQYRKNTVV-GILQAEHDLA----PLFP--VHRLDRLVSGLLILARNASKADLF 212
+ VHP + T+V G+L DL+ L P VHR+D+ +GLLI+A+N
Sbjct: 97 IVVHPAAGNQSGTLVNGLLYHCKDLSGINGTLRPGIVHRIDKDTTGLLIIAKNDLAHASL 156
Query: 213 RQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAAC 272
+Q+++ V + Y A V+GV +D A GR + + T K A
Sbjct: 157 SKQLQSKTVNRLYYALVHGVIQHDFGTID------APIGRDVKDR-QKMAVTATNSKDAR 209
Query: 273 TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSADRA 332
T F I +++V C TGRTHQIRVH+QY G+P+ D Y ++R+ M +
Sbjct: 210 THFQVIERFENYTLVECRLETGRTHQIRVHMQYIGHPVVGDEKY-----SYRKTMQTNGQ 264
Query: 333 AAYSH 337
++H
Sbjct: 265 LLHAH 269
>gi|419799995|ref|ZP_14325308.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0449]
gi|385696494|gb|EIG26975.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0449]
Length = 296
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFL-HRHEPPVMAWDV--SILQKEPDVLTVCKPP 158
+K G++ V+ + YTVK I + + E A D+ I+ ++ DV+ V KP
Sbjct: 31 IKEGKVLVNGAVKKAKYTVKEGDIIQYDVPEVEEVSYEAEDLPLDIVYEDQDVVVVNKPQ 90
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLA----PLFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V +L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 GMVVHPSAGHTSGTLVNALLYHVKDLSGINGELRPGIVHRIDKDTSGLLMVAKNDQAHVA 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
++++ K +++Y A V+G P +++ I + + A + KGK A
Sbjct: 151 LAEELKDKKSLRKYWAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGKTA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+F + G +++V + TGRTHQIRVH+ Y G+P+A D Y
Sbjct: 203 VTRFQVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPAY 247
>gi|73662884|ref|YP_301665.1| pseudouridylate synthase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495399|dbj|BAE18720.1| putative pseudouridylate synthase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 305
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 24/228 (10%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA------WDVSILQKEPDVLTVC 155
+K ++V+++++ +Y K + H + + V A ++ I ++ DV V
Sbjct: 38 IKASLVKVNDQVIKSNYKTKMN---DHIVVTEKETVEADIQPENLNLDIYYEDDDVAIVY 94
Query: 156 KPPSVPVHP-CGQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP G Y V G++ +L+ + VHR+D+ SGLL++A+N
Sbjct: 95 KPKGMVVHPSAGHYTGTLVNGLMYQMKNLSGINGEIRPGIVHRIDKDTSGLLMVAKNDVA 154
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
Q+ V ++Y+A V+G P VD I N ++ +S D + D G
Sbjct: 155 HRSLVDQLVNKTVTRKYVALVHGKIPHDYGTVDAPIGRN----KNDRQSMDVVDD----G 206
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T F + ++++ C+ TGRTHQIRVH++Y GYP+ D Y
Sbjct: 207 KEAVTHFNVLEHFNKYTLIECQLETGRTHQIRVHMKYIGYPLVGDPKY 254
>gi|269836533|ref|YP_003318761.1| RluA family pseudouridine synthase [Sphaerobacter thermophilus DSM
20745]
gi|269785796|gb|ACZ37939.1| pseudouridine synthase, RluA family [Sphaerobacter thermophilus DSM
20745]
Length = 313
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 108/235 (45%), Gaps = 27/235 (11%)
Query: 97 YYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD--------VSILQKE 148
Y S VK G + V+ E + + I L PPV D V ++ ++
Sbjct: 40 YAQSLVKAGDVYVNGEPARPARRIHEGDTIEILL----PPVPEPDDLTPEYIPVPVIYED 95
Query: 149 PDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP-------VHRLDRLVSGLLI 201
DV+ KP + HP + T+V +++A PL VHRLD+ SGL++
Sbjct: 96 DDVIIFDKPAGLVTHPAPGHEHGTLVNVVKALRPDVPLLMGGKRPGIVHRLDKDTSGLIV 155
Query: 202 LARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSL 261
+A+N QQ + V+KRYIA V+GV E E +D I+ + + A +
Sbjct: 156 VAKNEEARRYLVQQWQQRDVVKRYIALVHGVIRENEGTIDAPISRDPRNRKRMAVVPN-- 213
Query: 262 GDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
G+ A T F + +++ + TGRTHQIRVH+ + G+PI D +Y
Sbjct: 214 ------GRPAVTHFRVLERFRDATLLNVQIETGRTHQIRVHMLFIGHPIVGDQMY 262
>gi|340355065|ref|ZP_08677758.1| ribosomal large subunit pseudouridine synthase D [Sporosarcina
newyorkensis 2681]
gi|339622746|gb|EGQ27260.1| ribosomal large subunit pseudouridine synthase D [Sporosarcina
newyorkensis 2681]
Length = 302
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTV 154
VK RIQV+ + +Y VK+ +S +P A+D+ I+ ++ DVL V
Sbjct: 37 VKDERIQVNGSFIKSNYKVKTGDVVS----VEQPEPEAYDIEAEDLNLEIVYEDQDVLVV 92
Query: 155 CKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V G++ DL+ + VHR+D+ SGLL++A+N
Sbjct: 93 NKPVGMVVHPSPGHLSGTLVNGLMHQCTDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDK 152
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
Q+ V + Y A V+G P +D I + + A +
Sbjct: 153 AHVSLVDQLVEKSVNRVYTALVHGHIPHDNGTIDAPIGRDPRDRQKMAVVDN-------- 204
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + G +++V C TGRTHQIRVH++Y GYP+ D Y
Sbjct: 205 GKNAVTHFKVLERFGDYTLVECRLETGRTHQIRVHMKYIGYPLVGDPKY 253
>gi|339301239|ref|ZP_08650348.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
agalactiae ATCC 13813]
gi|417005689|ref|ZP_11944282.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
agalactiae FSL S3-026]
gi|319745315|gb|EFV97632.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
agalactiae ATCC 13813]
gi|341577502|gb|EGS27910.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
agalactiae FSL S3-026]
Length = 296
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ ++ YTV+ +I+ + + E V+ + + I+ ++ DV V K
Sbjct: 31 IKKGIVLVNGQVKKAKYTVQEGDRITFDIPKEE--VLDYQAENIPLDIIYQDDDVAVVNK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VH + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 89 PQGMVVHSSAGHSSGTLVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKNDRAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+ ++++ K +++Y+A V+G P V++ A GRS + KGK
Sbjct: 149 QVLAEELKDKKSLRKYLAIVHGNLPNDRGVIE------APIGRSDKDRKKQA--VTAKGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+F + G +++V TGRTHQIRVH+ Y G+P+A D +Y
Sbjct: 201 PAITRFHVLERFGDYTLVELSLETGRTHQIRVHMAYIGHPLAGDPVY 247
>gi|52141596|ref|YP_085233.1| pseudouridylate synthase [Bacillus cereus E33L]
gi|228987037|ref|ZP_04147162.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|229157471|ref|ZP_04285548.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
ATCC 4342]
gi|51975065|gb|AAU16615.1| pseudouridylate synthase (pseudouridine synthase) [Bacillus cereus
E33L]
gi|228625921|gb|EEK82671.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
ATCC 4342]
gi|228772631|gb|EEM21072.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 302
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 120/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV--KCGRIQVDE-----------EMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + + R QV + + V +Y VK + +I+ +
Sbjct: 10 AEEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAVKGNYKVKENDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A R E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIARDKKERQSMTVDE--NGKHAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|386013234|ref|YP_005931511.1| RluA family pseudouridine synthase [Pseudomonas putida BIRD-1]
gi|397694052|ref|YP_006531933.1| RluA family pseudouridine synthase [Pseudomonas putida DOT-T1E]
gi|421522317|ref|ZP_15968959.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
putida LS46]
gi|313499940|gb|ADR61306.1| RluA family pseudouridine synthase [Pseudomonas putida BIRD-1]
gi|397330782|gb|AFO47141.1| RluA family pseudouridine synthase [Pseudomonas putida DOT-T1E]
gi|402753936|gb|EJX14428.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
putida LS46]
Length = 318
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ V Y +++ + R
Sbjct: 21 AGQRIDNFLITALKGVPKTLVYRILRKGEVRVNKGRVKPEYKIQAGDIVRVPPVRLPERD 80
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ + KP + VH + + Q D L
Sbjct: 81 EPAPVAQGLLQRLEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQLRPDAKELE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SGLL++A+ S + V KRY+A V G +P ++ V N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWPTSKKQV------N 194
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQYT 306
A +S SG+ + + +GK A T F + G +IV PITGRTHQIRVH +
Sbjct: 195 APLLKSNLRSGERMVEVNDEGKEALTLFRVLRRFGDFATIVEARPITGRTHQIRVHTLHA 254
Query: 307 GYPIANDMLY 316
G+ IA D Y
Sbjct: 255 GHMIAGDSKY 264
>gi|423321680|ref|ZP_17299551.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB077-07]
gi|405591797|gb|EKB65265.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB077-07]
Length = 303
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 114/231 (49%), Gaps = 30/231 (12%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
VK I V+ ++ VSY +++ KI + P V DV I+ ++ DV+ V
Sbjct: 36 VKDQNILVNGKVEKVSYKIQAGDKIEVNI----PAVKPLDVIPENIPLDIVYEDDDVIVV 91
Query: 155 CKPPSVPVHPCGQYRKNTVVGIL--------QAEHDLAPLFPVHRLDRLVSGLLILARNA 206
KP + VHP + +T+V L Q+ P VHR+D+ SGLL++A+ A
Sbjct: 92 NKPQGMVVHPAPGHPDHTLVNALLYHTKALAQSPEGFRPGI-VHRIDKDTSGLLMIAKTA 150
Query: 207 SKADLFRQQIEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTP 265
+ Q+ A K KR Y A V+G F E V+D I N + A + +T
Sbjct: 151 KARESLEDQL-AHKTNKRLYWAIVHGNFAEENGVIDAPIGRNPYDRKKMA-----VVET- 203
Query: 266 LKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +S++ C+ TGRTHQIRVHL Y G+P+A D LY
Sbjct: 204 --GKKAITHFKVLEQFKDYSLIECQLETGRTHQIRVHLDYIGHPVAGDPLY 252
>gi|440791957|gb|ELR13189.1| hypothetical protein ACA1_100040 [Acanthamoeba castellanii str.
Neff]
Length = 213
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 67/105 (63%)
Query: 58 GRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS 117
G R V Y++EF +H K RW G+T++D+FA+EF YY A+K GRI+++ ++V
Sbjct: 90 GLRRVGLYHYEFKTHAKGRWVGRTVLDVFAKEFSAHSLAYYHEALKDGRIRLNGQIVDEG 149
Query: 118 YTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPV 162
V+ +SH +HRHEPPV + + I+ + +++ + KP S+P+
Sbjct: 150 AVVQEHDVLSHLIHRHEPPVTSAPIRIVHQSDELVVIDKPASIPL 194
>gi|126649705|ref|ZP_01721941.1| YlyB [Bacillus sp. B14905]
gi|126593424|gb|EAZ87369.1| YlyB [Bacillus sp. B14905]
Length = 303
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 113/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMAWDVS--ILQKEPDVLTVCKPP 158
V G I+V+ + V Y VK+ I+ + EP V+A +++ I+ ++ DVL V KP
Sbjct: 37 VSDGNIKVNGDAVKPKYKVKAGDVIAIDVPEAEPLDVIAENLALDIVYEDADVLVVNKPK 96
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V G++ DL+ + VHR+D+ SGLL++A+N +
Sbjct: 97 GMVVHPAPGHLTGTLVNGLMYQCKDLSGINGIMRPGIVHRIDKDTSGLLMVAKNDVAHES 156
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q+ V ++YIA V+G + +D I + + A + GK A
Sbjct: 157 LVDQLVNKTVTRKYIALVHGHIAHDKGTIDAPIGRDQKDRQKQAIVDN--------GKHA 208
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + G +++V C TGRTHQIRVH+ Y G+P+ D Y
Sbjct: 209 VTHFHVVERFGDYTLVECRLETGRTHQIRVHMNYIGFPLVGDPKY 253
>gi|314933372|ref|ZP_07840737.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
caprae C87]
gi|313653522|gb|EFS17279.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
caprae C87]
Length = 305
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 127/280 (45%), Gaps = 41/280 (14%)
Query: 50 KEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQV 109
K ++ D RR V +F+S + W+ + D E+ ++V
Sbjct: 3 KHEFKITDERR-VGQRIDKFLSESNDAWSRSQLQDWIKEDL----------------VKV 45
Query: 110 DEEMVPVSYTVKSSQKISHFLHRHEPPVMA------WDVSILQKEPDVLTVCKPPSVPVH 163
+++++ +Y VK + H + + V A D+ I ++ DV V KP + VH
Sbjct: 46 NDKVIKSNYKVKLN---DHIIVTEKEVVEADIQPEDLDLDIYYEDDDVAIVYKPKGMVVH 102
Query: 164 PC-GQYRKNTVVGILQAEHDLAPLFP------VHRLDRLVSGLLILARNASKADLFRQQI 216
P G Y V G++ +L+ + VHR+D+ SGLL++A+N +Q+
Sbjct: 103 PSPGHYTGTLVNGLMYQIKNLSGINGEIRPGIVHRIDKDTSGLLMVAKNDIAHRGLVEQL 162
Query: 217 EAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFT 276
V ++Y A V+G P VD I N + ++ A D GK A T F
Sbjct: 163 MNKSVKRKYTALVHGNIPHDYGTVDAPIGRNKNDRQAMAVVDD--------GKEAVTHFN 214
Query: 277 RISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ ++++ CE TGRTHQIRVH++Y G+P+ D Y
Sbjct: 215 VLEHFKDYTLIECELETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|298251897|ref|ZP_06975700.1| pseudouridine synthase, RluA family [Ktedonobacter racemifer DSM
44963]
gi|297546489|gb|EFH80357.1| pseudouridine synthase, RluA family [Ktedonobacter racemifer DSM
44963]
Length = 317
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 16/187 (8%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGIL--------QAEHDLAPLFPVHRLD 193
+ ++ ++ D+L V K + VHP + T+V L Q E D+ P +HRLD
Sbjct: 91 LEVVFEDDDLLIVNKAAGMVVHPAPGNYEGTLVNALVAHYPELQQDEGDMRPGI-IHRLD 149
Query: 194 RLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRS 253
+ SGLL++A+NA +Q++ K+IKRY+A V G + +D A GR
Sbjct: 150 KDTSGLLMVAKNAQSQAALIEQMKQHKIIKRYLALVEGNVELDQGSID------APIGRD 203
Query: 254 TAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
T + T +G+ A T F + H++VL + +TGRTHQIRVH Q +P+A D
Sbjct: 204 TRHR-QMMAVTLTEGRDAVTHFRVLQRFRKHTLVLVQIVTGRTHQIRVHFQAIKHPVAGD 262
Query: 314 MLYLCEH 320
Y H
Sbjct: 263 QTYGSGH 269
>gi|406903292|gb|EKD45419.1| hypothetical protein ACD_69C00301G0001 [uncultured bacterium]
Length = 315
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 114/255 (44%), Gaps = 28/255 (10%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
+G+ + + + K P ++ G ++V+++ SY ++S I PP
Sbjct: 21 SGQRLDNFLFNKLKNVPKSRIYRMLRGGEVRVNKKRAAPSYKIQSDDLI------RIPPF 74
Query: 138 MAWDV----------------SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH 181
A + +I+ ++ +L + KP + H + + A
Sbjct: 75 WAEETLSKGKPGSNLIKLLLDAIIFEDNRILVINKPSGIASHGGSGINFGVIETLRAARP 134
Query: 182 DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
DL L VHRLDR SG LILA+ S + I G ++K+Y+ V G + GE+ VD
Sbjct: 135 DLKNLELVHRLDRDTSGCLILAKKRSALRELHKLIFDGAILKKYVLLVRGQWQGGERAVD 194
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
AS ++ +SG+ + +GK + T F + S++ E TGRTHQIRV
Sbjct: 195 ------ASLLKNQLKSGERMVTIDHQGKDSLTIFRPLKVGIVASLIEAELKTGRTHQIRV 248
Query: 302 HLQYTGYPIANDMLY 316
H + GYPIA D Y
Sbjct: 249 HALHIGYPIAGDEKY 263
>gi|188590633|ref|YP_001919968.1| RluA family pseudouridine synthase [Clostridium botulinum E3 str.
Alaska E43]
gi|188500914|gb|ACD54050.1| pseudouridine synthase, RluA family [Clostridium botulinum E3 str.
Alaska E43]
Length = 298
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 17/255 (6%)
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM---AWDVSILQKEPDVLTVCK 156
SA K RI V+ +V ++Y +K+ I L+++E + D+ I+ ++ DVL + K
Sbjct: 34 SASKDQRIYVNNSVVRMNYMIKNGDVIKIDLNKNESQNINPEKIDLDIVYEDDDVLVINK 93
Query: 157 PPSVPVHPCGQYRKNTVV-GIL---QAEHDLAPLFPVHRLDRLVSGLLILARNASKADLF 212
P + VHP ++ T+ GIL Q + + V RLD SGL+I+A+N
Sbjct: 94 QPFIIVHPTKNFQSGTLANGILYYFQETNQNCIVRLVSRLDMNTSGLIIIAKNQFSHSRL 153
Query: 213 RQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAAC 272
+ ++ K+ KRY+A V+G E E +D+ I + D +G+ +
Sbjct: 154 SKDMKE-KLQKRYLAIVHGNLEEKEGTIDLPIYKPEGIEYGSRRVIDE------RGQRSI 206
Query: 273 TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY---LCEHVTHREGMSA 329
T + I + +V C TGRTHQIRVHL + G+PI D LY L E++ R+ + A
Sbjct: 207 THYKVIESFEGGDLVECLLETGRTHQIRVHLSHLGHPIYGDELYGVGLEENLIKRQALHA 266
Query: 330 DRAAAYSHHSPPPVS 344
S S P+S
Sbjct: 267 YGLDFESPRSLKPLS 281
>gi|325275825|ref|ZP_08141690.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
TJI-51]
gi|324099044|gb|EGB97025.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
TJI-51]
Length = 318
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ V Y +++ + R
Sbjct: 21 AGQRIDNFLITALKGVPKTLVYRILRKGEVRVNKGRVKPEYKIQAGDIVRVPPVRLPERD 80
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ + KP + VH + + Q D L
Sbjct: 81 EPAPVAQGLLQRLEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQLRPDAKELE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SGLL++A+ S + V KRY+A V G +P ++ V N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWPTAKKQV------N 194
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQYT 306
A +S SG+ + + +GK A T F + G +IV PITGRTHQIRVH +
Sbjct: 195 APLLKSNLRSGERMVEVNDEGKEALTLFRVLRRFGDFATIVEARPITGRTHQIRVHTLHA 254
Query: 307 GYPIANDMLY 316
G+ IA D Y
Sbjct: 255 GHMIAGDNKY 264
>gi|149920990|ref|ZP_01909450.1| Pseudouridine synthase, RluD [Plesiocystis pacifica SIR-1]
gi|149818122|gb|EDM77578.1| Pseudouridine synthase, RluD [Plesiocystis pacifica SIR-1]
Length = 356
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 26/201 (12%)
Query: 134 EPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP---VH 190
E P + D ++ ++PDVL + KP ++PVHP +Y ++T+ +++ L P H
Sbjct: 99 EEPAVILDYGVVHEDPDVLVLDKPGNLPVHPTARYHRHTLTALMR--RRLGPKHGWEMAH 156
Query: 191 RLDRLVSGLLILARNAS-----KADLFRQQIEAGKVIKRYIARVNGVF--PEGEQVVDVN 243
R+DR SG++I R + K FR+++ K Y+A V G PEG +++D+
Sbjct: 157 RIDRETSGVIIFGRRKASGPKIKGSFFRREVH-----KEYLAIVLGRLELPEGPRLIDMP 211
Query: 244 INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-----SIVLCEPITGRTHQ 298
+ +A + + G D +G + +G H ++V C P TGRTHQ
Sbjct: 212 LG-SAVGSKIMIKMGPRPVD---EGGLPAQTTIEVLAHGEHRGQPITLVRCLPRTGRTHQ 267
Query: 299 IRVHLQYTGYPIANDMLYLCE 319
IRVHL G+PI D LY E
Sbjct: 268 IRVHLAEIGHPILGDKLYAAE 288
>gi|257884651|ref|ZP_05664304.1| pseudouridylate synthase [Enterococcus faecium 1,231,501]
gi|261207803|ref|ZP_05922488.1| pseudouridylate synthase [Enterococcus faecium TC 6]
gi|289566255|ref|ZP_06446687.1| RNA pseudouridine synthase ylyB [Enterococcus faecium D344SRF]
gi|294616594|ref|ZP_06696370.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1636]
gi|416131314|ref|ZP_11597685.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E4452]
gi|430820160|ref|ZP_19438797.1| RluA family pseudouridine synthase [Enterococcus faecium E0045]
gi|430822263|ref|ZP_19440842.1| RluA family pseudouridine synthase [Enterococcus faecium E0120]
gi|430825314|ref|ZP_19443519.1| RluA family pseudouridine synthase [Enterococcus faecium E0164]
gi|430828567|ref|ZP_19446687.1| RluA family pseudouridine synthase [Enterococcus faecium E0269]
gi|430849881|ref|ZP_19467648.1| RluA family pseudouridine synthase [Enterococcus faecium E1185]
gi|430864759|ref|ZP_19480584.1| RluA family pseudouridine synthase [Enterococcus faecium E1574]
gi|430870884|ref|ZP_19483471.1| RluA family pseudouridine synthase [Enterococcus faecium E1575]
gi|431195499|ref|ZP_19500477.1| RluA family pseudouridine synthase [Enterococcus faecium E1620]
gi|431295228|ref|ZP_19507116.1| RluA family pseudouridine synthase [Enterococcus faecium E1626]
gi|431620624|ref|ZP_19522789.1| RluA family pseudouridine synthase [Enterococcus faecium E1904]
gi|431743697|ref|ZP_19532573.1| RluA family pseudouridine synthase [Enterococcus faecium E2071]
gi|431765402|ref|ZP_19553916.1| RluA family pseudouridine synthase [Enterococcus faecium E4215]
gi|431766987|ref|ZP_19555447.1| RluA family pseudouridine synthase [Enterococcus faecium E1321]
gi|257820489|gb|EEV47637.1| pseudouridylate synthase [Enterococcus faecium 1,231,501]
gi|260078186|gb|EEW65892.1| pseudouridylate synthase [Enterococcus faecium TC 6]
gi|289161962|gb|EFD09830.1| RNA pseudouridine synthase ylyB [Enterococcus faecium D344SRF]
gi|291590544|gb|EFF22277.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1636]
gi|364093667|gb|EHM35915.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E4452]
gi|430439850|gb|ELA50160.1| RluA family pseudouridine synthase [Enterococcus faecium E0045]
gi|430443321|gb|ELA53306.1| RluA family pseudouridine synthase [Enterococcus faecium E0120]
gi|430446207|gb|ELA55892.1| RluA family pseudouridine synthase [Enterococcus faecium E0164]
gi|430483400|gb|ELA60478.1| RluA family pseudouridine synthase [Enterococcus faecium E0269]
gi|430536576|gb|ELA76943.1| RluA family pseudouridine synthase [Enterococcus faecium E1185]
gi|430553540|gb|ELA93226.1| RluA family pseudouridine synthase [Enterococcus faecium E1574]
gi|430558683|gb|ELA98094.1| RluA family pseudouridine synthase [Enterococcus faecium E1575]
gi|430571877|gb|ELB10751.1| RluA family pseudouridine synthase [Enterococcus faecium E1620]
gi|430581318|gb|ELB19763.1| RluA family pseudouridine synthase [Enterococcus faecium E1626]
gi|430603570|gb|ELB41088.1| RluA family pseudouridine synthase [Enterococcus faecium E1904]
gi|430606486|gb|ELB43837.1| RluA family pseudouridine synthase [Enterococcus faecium E2071]
gi|430628489|gb|ELB64924.1| RluA family pseudouridine synthase [Enterococcus faecium E4215]
gi|430631860|gb|ELB68160.1| RluA family pseudouridine synthase [Enterococcus faecium E1321]
Length = 303
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + V+ + V +Y VK +I+ + P DV +I+ ++ DV +
Sbjct: 35 LKNGAVSVNGQPVKANYKVKQGDEITVLI----PEPETLDVVPENIPLTIVYEDEDVAVI 90
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 91 NKPQGMVVHPSAGHTHGTMVNALMYHIKDLSTINGVIRPGIVHRIDKDTSGLLMVAKNDQ 150
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ QQ++ +++Y+A V+G P + + NA GRS + +
Sbjct: 151 AHESLAQQLKDKTSLRKYVALVHGEIPHEKGTI------NAPIGRS--KENRKMQAIRED 202
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + ++V + TGRTHQIRVH++Y GYP+A D +Y
Sbjct: 203 GKPAVTHFTVLERFEGFTLVELKLETGRTHQIRVHMKYIGYPLAGDPVY 251
>gi|60599504|gb|AAX26297.1| unknown [Schistosoma japonicum]
Length = 148
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 79/137 (57%), Gaps = 4/137 (2%)
Query: 99 VSAVKC--GRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCK 156
V A KC G I V+ V Y + + +S +HRHE PV+ + + D+L + K
Sbjct: 5 VIAQKCNSGDILVNGARVDPDYVLNDNDLLSQQVHRHEFPVLNLPIEFIHDSHDMLVINK 64
Query: 157 PPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQI 216
PPS+P+HPCG+Y N++ IL ++ L PL HRLDR+ SGLL++A++ + + QI
Sbjct: 65 PPSIPIHPCGRYTLNSITHILAKDYGLRPLRFTHRLDRMTSGLLLIAKDYDTSVRLQSQI 124
Query: 217 EAGKVIKRYIARVNGVF 233
+ +V K + R++ +
Sbjct: 125 ASKEVTK--VTRLSKIL 139
>gi|295104735|emb|CBL02279.1| Pseudouridylate synthases, 23S RNA-specific [Faecalibacterium
prausnitzii SL3/3]
Length = 303
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 93/182 (51%), Gaps = 23/182 (12%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVG---ILQAEHDLAPLF-PVHRLDRLVS 197
V ++ ++ + + KPP + VHP Y T+ A H +P+F PV+R+D+ S
Sbjct: 81 VKVVYEDAFAVVLEKPPQLAVHPTLNYPGGTLANGYAAWAAAHGHSPVFRPVNRIDKDTS 140
Query: 198 GLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAES 257
GL++ A+NA A L AG+V K Y A G P GE +D I
Sbjct: 141 GLVLAAKNAYAAPLL-----AGRVTKLYYAIAQGALPLGEGAIDAPIG----------RR 185
Query: 258 GDSLGD---TPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDM 314
GDS+ TP +GK + T++T I S+ C P+TGRTHQIRVH G+P+A D
Sbjct: 186 GDSIIGRCVTP-EGKPSRTEYTIIKEENGLSLAACVPVTGRTHQIRVHFASIGHPLAGDD 244
Query: 315 LY 316
LY
Sbjct: 245 LY 246
>gi|418576424|ref|ZP_13140570.1| putative pseudouridylate synthase [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325486|gb|EHY92618.1| putative pseudouridylate synthase [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 305
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 24/228 (10%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA------WDVSILQKEPDVLTVC 155
+K ++V+++++ +Y K + H + + V A ++ I ++ DV V
Sbjct: 38 IKASLVKVNDQVIKSNYKTKMN---DHIVVTEKETVEADIQPENLNLDIYYEDDDVAIVY 94
Query: 156 KPPSVPVHP-CGQYRKNTVVGILQAEHDLAPLFP------VHRLDRLVSGLLILARNASK 208
KP + VHP G Y V G++ +L+ + VHR+D+ SGLL++A+N
Sbjct: 95 KPKGMVVHPSAGHYTGTLVNGLMYQMKNLSGINGEIRPGIVHRIDKDTSGLLMVAKNDVA 154
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
Q+ V ++Y+A V+G P VD I N ++ +S D + D G
Sbjct: 155 HRSLVDQLVNKTVTRKYVALVHGNIPHDYGTVDAPIGRN----KNDRQSMDVVDD----G 206
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T F + ++++ C+ TGRTHQIRVH++Y GYP+ D Y
Sbjct: 207 KEAVTHFNVLEHFNKYTLIECQLETGRTHQIRVHMKYIGYPLVGDPKY 254
>gi|365924511|ref|ZP_09447274.1| ribosomal large subunit pseudouridine synthase [Lactobacillus mali
KCTC 3596 = DSM 20444]
gi|420265320|ref|ZP_14767883.1| ribosomal large subunit pseudouridine synthase [Lactobacillus mali
KCTC 3596 = DSM 20444]
gi|394428211|gb|EJF00790.1| ribosomal large subunit pseudouridine synthase [Lactobacillus mali
KCTC 3596 = DSM 20444]
Length = 301
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 25/223 (11%)
Query: 107 IQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTVCKPPS 159
I V+ + +Y VK + +I + PPV + I+ ++ DVL V KP
Sbjct: 39 ILVNSQPAKPNYKVKENDQIELTI----PPVKETSIQPENIPLDIVYEDEDVLVVNKPQG 94
Query: 160 VPVHPCGQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADLFR 213
+ VHP + T+V L A L+ + VHR+D+ SGLL++A+N
Sbjct: 95 MVVHPSPGHPDKTLVNALLAHSPLSTINGEFRPGIVHRIDKDTSGLLMVAKNDQAHRSLA 154
Query: 214 QQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACT 273
Q++A I+ YIA V+GV E +D A GRS + + G+ A T
Sbjct: 155 AQLKAKTNIREYIALVHGVIKEDNGKID------APLGRSPKDRKKQAVVS--GGRNAVT 206
Query: 274 KFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+F+ I ++++ C TGRTHQIRVHL+Y G+P+ D LY
Sbjct: 207 RFSVIKRYQNYTLIKCILETGRTHQIRVHLKYIGHPLVGDPLY 249
>gi|227510357|ref|ZP_03940406.1| pseudouridylate synthase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190009|gb|EEI70076.1| pseudouridylate synthase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 303
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 14/181 (7%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL------FPVHRLDRL 195
+ I+ ++ DV+ V KP + VHP + +T+V L L+ + VHR+D+
Sbjct: 77 LDIVYEDEDVIVVNKPQGMVVHPSAGHPNHTLVNALLFHSPLSSINGEYRPGIVHRIDKD 136
Query: 196 VSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTA 255
SGLL++A+N +Q++A K +++Y+A V+G E V+ I + + A
Sbjct: 137 TSGLLMVAKNDMAHKALSKQLKAKKNLRKYVALVHGRIKEDSGVIKAPIARSPKDRKKQA 196
Query: 256 ESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
D G+ A T F + ++++ C TGRTHQIRVH+QY G+PI D L
Sbjct: 197 IVAD--------GRPAITHFEVMERFQDYTLIECRLETGRTHQIRVHMQYIGHPIVGDPL 248
Query: 316 Y 316
Y
Sbjct: 249 Y 249
>gi|104780776|ref|YP_607274.1| 23S rRNA pseudouridylate synthase [Pseudomonas entomophila L48]
gi|95109763|emb|CAK14468.1| 23S rRNA pseudouridylate synthase [Pseudomonas entomophila L48]
Length = 318
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 114/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ + Y +++ + R
Sbjct: 21 AGQRIDNFLITALKGVPKTLVYRILRKGEVRVNKGRIKPEYKLQAGDIVRVPPVRLPERD 80
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ + KP + VH + + Q D L
Sbjct: 81 EPAPVAQGLLQRLEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQLRPDAKELE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SGLL++A+ S + V KRY+A V G +P ++ V N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWPTSKKQV------N 194
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQYT 306
A +S SG+ + + +GK A T F + G +IV PITGRTHQIRVH +
Sbjct: 195 APLQKSNLRSGERMVEVNDEGKEALTMFRVLRRFGEFATIVEARPITGRTHQIRVHTLHA 254
Query: 307 GYPIANDMLY 316
G+ IA D Y
Sbjct: 255 GHMIAGDSKY 264
>gi|346314172|ref|ZP_08855693.1| hypothetical protein HMPREF9022_01350 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345906530|gb|EGX76254.1| hypothetical protein HMPREF9022_01350 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 304
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 117/245 (47%), Gaps = 26/245 (10%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKISHFLHRH-----EPPVMAWDVSILQKEPDVLTVCKPPS 159
G I V++ V +Y VK+ I+ + P M DV ++ DV+ + KP +
Sbjct: 39 GSILVNQNAVKANYKVKADDCITAVFNDEMEMEARPEKMELDVRY--EDEDVIVINKPKN 96
Query: 160 VPVHPCGQYRKNTVV-GILQAEHDLA----PLFP--VHRLDRLVSGLLILARNASKADLF 212
+ VHP + T+V G+L DL+ L P VHR+D+ +GLLI+A+N
Sbjct: 97 IVVHPAAGNQSGTLVNGLLYHCKDLSGINGTLRPGIVHRIDKDTTGLLIVAKNDLAHASL 156
Query: 213 RQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAAC 272
+Q+++ V + Y A V+GV +D A GR + + T K A
Sbjct: 157 SKQLQSKTVNRLYYALVHGVIQHDFGTID------APIGRDVKDR-QKMAVTATNSKDAR 209
Query: 273 TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSADRA 332
T F I +++V C TGRTHQIRVH+QY G+P+ D Y ++R+ M +
Sbjct: 210 THFQVIERFENYTLVECRLETGRTHQIRVHMQYIGHPVVGDEKY-----SYRKTMQTNGQ 264
Query: 333 AAYSH 337
++H
Sbjct: 265 LLHAH 269
>gi|429104090|ref|ZP_19166064.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter turicensis 564]
gi|426290739|emb|CCJ92177.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter turicensis 564]
Length = 331
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 114/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ + Y V+ +++
Sbjct: 32 AGQRIDNFLRTQLKGVPKSLIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAERE 91
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 92 EEAVSPHLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 151
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + + V +
Sbjct: 152 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHVKTVQAPLLK 211
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F + ++V C P+TGRTHQIRVH Q+
Sbjct: 212 N------ILQSGERIVRVNQEGKPSETRFKVEERFASATLVRCSPVTGRTHQIRVHTQFA 265
Query: 307 GYPIANDMLY 316
G+PIA D+ Y
Sbjct: 266 GHPIAFDLAY 275
>gi|322389731|ref|ZP_08063278.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis ATCC 903]
gi|321143570|gb|EFX39001.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis ATCC 903]
Length = 296
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFL-HRHEPPVMAWDV--SILQKEPDVLTVCKPP 158
+K G++ V+ + YTVK I + + E A D+ I+ ++ DV+ V KP
Sbjct: 31 IKEGKVLVNGTVKKAKYTVKEGDIIQYEVPEVEEVSYEAEDLPLDIVYEDQDVVVVNKPQ 90
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLA----PLFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V +L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 GMVVHPSAGHTSGTLVNALLYHVKDLSGINGELRPGIVHRIDKDTSGLLMIAKNDQAHVA 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
++++ K +++Y A V+G P +++ I + + A + KGK A
Sbjct: 151 LAEELKDKKSLRKYWAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGKPA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+F + G +++V + TGRTHQIRVH+ Y G+P+A D Y
Sbjct: 203 VTRFQVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPAY 247
>gi|226324582|ref|ZP_03800100.1| hypothetical protein COPCOM_02366 [Coprococcus comes ATCC 27758]
gi|225207030|gb|EEG89384.1| pseudouridine synthase, RluA family [Coprococcus comes ATCC 27758]
Length = 302
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 21/204 (10%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVG----ILQAEHDLAPLFPVHRLDRLVS 197
+SI+ ++PD+L + KP +P+HP NT+ + + + ++RLDR +
Sbjct: 89 LSIVYEDPDLLVINKPAGMPIHPSQGNYDNTLANACAWYFKEKGEPFVYRCINRLDRDTT 148
Query: 198 GLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAES 257
GLLI+AR+ A L + ++ + Y+A G+ PE + A R +
Sbjct: 149 GLLIIARHLYSASLLSAMMARREIHREYLALATGIVPEDGII-------TAPIARKEGST 201
Query: 258 GDSLGDTPLKGKAACTKFTRISTNGT---HSIVLCEPITGRTHQIRVHLQYTGYPIANDM 314
+ + D G+ ACT + RIS T +S+V + TGRTHQIRVH+ Y G+P+ D
Sbjct: 202 IERMVDFK-HGEYACTHYRRISITNTDPVYSLVALKLDTGRTHQIRVHMNYIGHPLPGDF 260
Query: 315 LYLCEHVTHREGMSADRAAAYSHH 338
LY ++ +H R A +SHH
Sbjct: 261 LYNPDY-SH-----ISRQALHSHH 278
>gi|359397138|ref|ZP_09190188.1| Ribosomal large subunit pseudouridine synthase C [Halomonas
boliviensis LC1]
gi|357968932|gb|EHJ91381.1| Ribosomal large subunit pseudouridine synthase C [Halomonas
boliviensis LC1]
Length = 317
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 16/249 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
AG+ I + KG P V+ G ++V+++ V V Y +++ + R P
Sbjct: 17 AGQRIDNFLMTRLKGAPRALIYRIVRKGEVRVNKKRVKVDYRLQAGDLVRVPPLRLAPRE 76
Query: 138 MAWDVS----------ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
+VS ++ + PD + + KP + VH + + + Q DL+ L
Sbjct: 77 AVKEVSDNLRDLLVGSVIMEGPDWMVLNKPSGLAVHGGSGVKIGLIEALRQVRDDLSFLE 136
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SG L+LA++ + ++ + KRY+A V+G +P + ++
Sbjct: 137 LVHRLDRDTSGCLLLAKSRDALVTLNESLKKHGMDKRYLALVSGRWPARKTYESARLD-- 194
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTG 307
R A +G+ GK + T F+ + T +++ EP+TGRTHQIRVH + G
Sbjct: 195 ----RFDAGNGERRVRVDPNGKVSRTHFSVVETFEKVTLIEAEPVTGRTHQIRVHAAHAG 250
Query: 308 YPIANDMLY 316
+ + D Y
Sbjct: 251 HALLGDDKY 259
>gi|329769635|ref|ZP_08261039.1| hypothetical protein HMPREF0433_00803 [Gemella sanguinis M325]
gi|328838390|gb|EGF87999.1| hypothetical protein HMPREF0433_00803 [Gemella sanguinis M325]
Length = 299
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 19/222 (8%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKIS-HFLHRHEPPVMAWD--VSILQKEPDVLTVCKPPSVP 161
G I+VD V +Y +K S I+ + E V+ D V I+ ++ D+L V KP +
Sbjct: 39 GYIKVDGNTVKTNYKLKESNVITIDYKEPEELDVVKQDIPVDIVYEDNDLLIVNKPKGMV 98
Query: 162 VHPCGQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADLFRQQ 215
VHP ++ T+V L +L+ + VHR+D+ SGLLI+A+N KA + +
Sbjct: 99 VHPSAGHKDGTLVNALLYHCELSSINGTIRPGIVHRIDKDTSGLLIVAKN-DKAHVKLSE 157
Query: 216 IEAGKVIKR-YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTK 274
+ A K +KR Y A V+G +D I N + A + GK + T
Sbjct: 158 MIANKEVKRKYYALVHGSIKHDYGTIDAPIARNPKERKEMAVIDE--------GKPSITH 209
Query: 275 FTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
F I ++++ CE TGRTHQIRVH++Y +P+ D +Y
Sbjct: 210 FKVIDRFEKYTLIECELETGRTHQIRVHMKYINHPLVGDPVY 251
>gi|226943601|ref|YP_002798674.1| Pseudouridine synthase, RluC [Azotobacter vinelandii DJ]
gi|226718528|gb|ACO77699.1| Pseudouridine synthase, RluC [Azotobacter vinelandii DJ]
Length = 278
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 110/232 (47%), Gaps = 17/232 (7%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRHEPPVMA------WDVSILQKEPDV 151
++ G ++V++ + Y +++ + R EP +A + +I+ ++ +
Sbjct: 6 LRKGEVRVNKGRIKPEYKLQAGDLVRVPPLRLAERDEPVPLAQGLLERLEAAIVHEDKSL 65
Query: 152 LTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADL 211
+ + KP + VH + + Q + L VHRLDR SGLL++A+ S
Sbjct: 66 IVLNKPAGIAVHGGSGLSHGVIEALRQLRPEARDLELVHRLDRDTSGLLMIAKKRSMLRH 125
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+ + V KRY+A V G +P + V + N T SG+ + + +G+ A
Sbjct: 126 LHEALRGDGVDKRYLALVRGAWPSARKQVSAPLQKN------TLRSGERMVEVDEEGREA 179
Query: 272 CTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVT 322
T F + G ++V +P+TGRTHQIRVH ++ G+PIA D Y E T
Sbjct: 180 LTLFRVLRRFGDFATLVEAKPVTGRTHQIRVHARHAGHPIAGDAKYGDETFT 231
>gi|448237306|ref|YP_007401364.1| pseudouridylate synthase [Geobacillus sp. GHH01]
gi|445206148|gb|AGE21613.1| pseudouridylate synthase [Geobacillus sp. GHH01]
Length = 304
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 95/182 (52%), Gaps = 14/182 (7%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE-HDLAP----LFP--VHRLDR 194
+ I ++ DVL V KP + VHP + + T+V L A DL+ L P VHR+D+
Sbjct: 80 LDIYYEDEDVLVVNKPRGMVVHPAPGHMRGTLVNALLAHCRDLSGINGVLRPGIVHRIDK 139
Query: 195 LVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRST 254
SGLL++A+N + +Q+ V +RY A V+GV P +D I + +
Sbjct: 140 DTSGLLMVAKNDAAHRSLVEQLVNKTVTRRYKAIVHGVIPHDYGTIDAPIGRDKRDRKKM 199
Query: 255 AESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDM 314
A + ++ GK A T F + ++ V C+ TGRTHQIRVH++Y GYP+A D
Sbjct: 200 AVTEEN-------GKEAVTHFRVLERFRHYTYVECQLETGRTHQIRVHMKYIGYPLAGDP 252
Query: 315 LY 316
Y
Sbjct: 253 QY 254
>gi|420144301|ref|ZP_14651789.1| Pseudouridine synthase [Lactococcus garvieae IPLA 31405]
gi|391855753|gb|EIT66302.1| Pseudouridine synthase [Lactococcus garvieae IPLA 31405]
Length = 301
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 28/230 (12%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTV 154
++ G++ VD ++ Y VK + I++ L P V D+ I+ ++ DV +
Sbjct: 34 IREGKVTVDGQVKKAKYKVKVGEAIAYEL----PEVEVLDIQAEDIPLDIVYEDSDVAVI 89
Query: 155 CKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V I+ DL+ + VHR+D+ SGLL++A+N +
Sbjct: 90 NKPQGMVVHPSAGHASGTLVNAIMYHIKDLSSINGVIRPGIVHRIDKDTSGLLMIAKNDA 149
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAE-SGDSLGDTPL 266
+ Q++A +RYIA V+G P + ++ I N + A SG
Sbjct: 150 AHESLAAQLKAKTNKRRYIALVHGELPNEKGTIEAPIGRNPKERKKQAVISG-------- 201
Query: 267 KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + +++V E TGRTHQIRVH+ Y G+PIA D LY
Sbjct: 202 -GKPAKTHFTVMERFPGYTLVALELETGRTHQIRVHMAYIGFPIAGDPLY 250
>gi|339009228|ref|ZP_08641800.1| pseudouridine synthase [Brevibacillus laterosporus LMG 15441]
gi|338773706|gb|EGP33237.1| pseudouridine synthase [Brevibacillus laterosporus LMG 15441]
Length = 310
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 23/228 (10%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPP------VMAWDVSILQKEPDVLTVC 155
VK GR+ V++ + +Y V +IS R PP A D+ I+ ++ DV+ V
Sbjct: 42 VKEGRVTVNDAPIKNNYKVAMDDEISL---RVPPPKELKIEAQAMDLDIVYEDSDVVVVN 98
Query: 156 KPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP G Y V G++ DL+ + VHR+D+ SGLL++A+N
Sbjct: 99 KPRGLVVHPALGHYTGTLVNGLMHHCKDLSGINGVMRPGIVHRIDKDTSGLLMIAKNDKA 158
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
Q++ V ++Y+A V+G P +D I + ++ + G++
Sbjct: 159 HASLAAQLKEHTVNRKYVALVHGEIPHEMGTIDAPIGRDP---KNRQQMAVVFGNS---- 211
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T F + ++V + TGRTHQIRVH++Y GYP+A D Y
Sbjct: 212 KPAVTHFVVLERMKDFTLVELKLETGRTHQIRVHMKYIGYPLAGDPKY 259
>gi|365139622|ref|ZP_09345969.1| ribosomal large subunit pseudouridine synthase C [Klebsiella sp.
4_1_44FAA]
gi|363654235|gb|EHL93150.1| ribosomal large subunit pseudouridine synthase C [Klebsiella sp.
4_1_44FAA]
Length = 331
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ V Y V+ +++
Sbjct: 32 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEAGDEVRIPPVRVAERE 91
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 92 EEAVSPHLQKVAALSEVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 151
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +VV +
Sbjct: 152 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVLGQWQSHTKVVQAPLLK 211
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 212 N------ILQSGERIVRVSQEGKPSETRFKVEERYEFATLVRCSPVTGRTHQIRVHTQYA 265
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 266 GHPIAFDDRY 275
>gi|449887546|ref|ZP_21786884.1| putative pseudouridylate synthase [Streptococcus mutans SA41]
gi|449942490|ref|ZP_21806043.1| putative pseudouridylate synthase [Streptococcus mutans 11A1]
gi|450041170|ref|ZP_21837242.1| putative pseudouridylate synthase [Streptococcus mutans T4]
gi|449150487|gb|EMB54250.1| putative pseudouridylate synthase [Streptococcus mutans 11A1]
gi|449197987|gb|EMB99120.1| putative pseudouridylate synthase [Streptococcus mutans T4]
gi|449252494|gb|EMC50471.1| putative pseudouridylate synthase [Streptococcus mutans SA41]
Length = 296
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 108/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-------VSILQKEPDVLTV 154
+K G + V+ + Y VK +H P D + I+ ++ DV +
Sbjct: 31 IKAGLVWVNGKTQKAKYAVKEGD----IIHYERPQEEVLDCVAQNIPLEIVYEDEDVAVI 86
Query: 155 CKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V +L DL+ + VHR+D+ SGLL++A+N
Sbjct: 87 NKPQGMVVHPSVGHPSGTLVNALLFHIKDLSSINGVIRPGIVHRIDKDTSGLLMIAKNDQ 146
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
++++ K +++YIA V+G P V++ A GRS E K
Sbjct: 147 AHQALAKELKEKKSLRQYIALVHGNLPNDRGVIE------APIGRS--EKDRKKQTVTAK 198
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + G +S+V TGRTHQIRVH+ Y G+PIA D LY
Sbjct: 199 GKPAVTHFKVLERFGQYSLVELTLETGRTHQIRVHMAYIGHPIAGDPLY 247
>gi|30249427|ref|NP_841497.1| rluC; ribosomal large subunit pseudouridine synthase C
[Nitrosomonas europaea ATCC 19718]
gi|30138790|emb|CAD85367.1| rluC; ribosomal large subunit pseudouridine synthase C
[Nitrosomonas europaea ATCC 19718]
Length = 343
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 120/248 (48%), Gaps = 15/248 (6%)
Query: 80 KTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHF-LHRHEPPVM 138
+ I + KG P + ++ G+++V+ + + SY ++ K+ + R PV
Sbjct: 36 QRIDNFLIRSLKGIPRRHIYQLLRSGQVRVNSKRIDASYRLQLGDKVRIPPVIRSVKPVS 95
Query: 139 AWDV------SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH-DLAPLFPVHR 191
+ V +IL ++ +L + KP + VH G + V+ L+ +H D L VHR
Sbjct: 96 SQGVYRTDRFNILYQDDHLLVIDKPAGIAVH-GGSGISHGVIEQLRGQHPDWKFLELVHR 154
Query: 192 LDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNIN-YNASA 250
LDR SG+L+LAR +QI G V K Y+ V G + Q V + +N Y +A
Sbjct: 155 LDRETSGILLLARKRQSLLELHRQIREGTVEKHYLTLVRGKWKNSVQNVRLPLNKYLTAA 214
Query: 251 G--RSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGY 308
G R +G + D K + A T FT S++ E TGRTHQIRVHL + G+
Sbjct: 215 GERRVAVAAGRNDQD---KAQQAHTLFTLQKAWEDFSLLDAELKTGRTHQIRVHLAHLGF 271
Query: 309 PIANDMLY 316
PIA D Y
Sbjct: 272 PIAGDDKY 279
>gi|352101009|ref|ZP_08958520.1| ribosomal large subunit pseudouridine synthase C [Halomonas sp.
HAL1]
gi|350600930|gb|EHA16987.1| ribosomal large subunit pseudouridine synthase C [Halomonas sp.
HAL1]
Length = 313
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 16/249 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
AG+ I + KG P V+ G ++V+++ V V Y +++ + R P
Sbjct: 17 AGQRIDNFLMTRLKGAPRALIYRIVRKGEVRVNKKRVKVDYRLQAGDLVRVPPLRLAPRE 76
Query: 138 MAWDVS----------ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
+VS ++ + PD + + KP + VH + + + Q DL+ L
Sbjct: 77 AVKEVSDNLRDLLVGSVIMEGPDWMVLNKPSGLAVHGGSGVKIGLIEALRQVRDDLSFLE 136
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SG L+LA++ + ++ + KRY+A V+G +P + ++
Sbjct: 137 LVHRLDRDTSGCLLLAKSRDALVTLNESLKKHGMDKRYLALVSGRWPARKTYESARLD-- 194
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTG 307
R A +G+ GK + T F+ + T +++ EP+TGRTHQIRVH + G
Sbjct: 195 ----RFDAGNGERRVRVDPNGKVSRTHFSVVETFEKVTLIEAEPVTGRTHQIRVHAAHAG 250
Query: 308 YPIANDMLY 316
+ + D Y
Sbjct: 251 HALLGDDKY 259
>gi|218233909|ref|YP_002368692.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus B4264]
gi|229152090|ref|ZP_04280285.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
m1550]
gi|218161866|gb|ACK61858.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus B4264]
gi|228631439|gb|EEK88073.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
m1550]
Length = 302
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 118/259 (45%), Gaps = 34/259 (13%)
Query: 68 EFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS 127
+F++ + N W+ + +E + V+ + V +Y VK +I+
Sbjct: 20 KFVTGINNEWSRTQVQQWIKDEV----------------VTVNGKAVKGNYKVKEEDEIT 63
Query: 128 HFLHRHEPPVMA---WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDL 183
+ E + ++ I ++ DVL V KP + VHP + T+V G++ DL
Sbjct: 64 VTIPEPEELDIQPEDLNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDL 123
Query: 184 APL------FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237
+ + VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P +
Sbjct: 124 SGINGVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDK 183
Query: 238 QVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTH 297
+D A R E D GK A T F + ++V C TGRTH
Sbjct: 184 GTID------APIARDKKERQSMTVDE--NGKNAVTHFQVLERFKDFTLVECRLETGRTH 235
Query: 298 QIRVHLQYTGYPIANDMLY 316
QIRVH++Y GYP+A D Y
Sbjct: 236 QIRVHMKYIGYPLAGDPKY 254
>gi|312866736|ref|ZP_07726950.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0405]
gi|311097817|gb|EFQ56047.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0405]
Length = 296
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFL-HRHEPPVMAWDV--SILQKEPDVLTVCKPP 158
+K G++ V+ + YTVK I + + E A D+ I+ ++ DV+ V KP
Sbjct: 31 IKEGKVLVNGTVKKAKYTVKEGDIIQYEVPEVEEVSYEAEDLPLDIVYEDQDVVVVNKPQ 90
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLA----PLFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V +L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 GMVVHPSAGHTSGTLVNALLYHVKDLSGINGELRPGIVHRIDKDTSGLLMVAKNDQAHVA 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
++++ K +++Y A V+G P +++ I + + A + KGK A
Sbjct: 151 LAEELKDKKSLRKYWAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGKPA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+F + G +++V + TGRTHQIRVH+ Y G+P+A D Y
Sbjct: 203 VTRFQVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPAY 247
>gi|240047580|ref|YP_002960968.1| pseudouridine synthase [Mycoplasma conjunctivae HRC/581]
gi|239985152|emb|CAT05162.1| Pseudouridine synthase [Mycoplasma conjunctivae]
Length = 306
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 117/236 (49%), Gaps = 32/236 (13%)
Query: 102 VKCGRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPPV----MAWDVSILQKEPDVLTVCK 156
++ ++VD ++V V++ ++ Q IS + EP + D I+ ++ D++ + K
Sbjct: 37 IEANSVKVDNKVVNKVNFLLREGQFISILNNYQEPQLKVEAQKVDFEIVYQDNDIIVINK 96
Query: 157 PPSVPVHPC-GQYRKNTVVGILQAEHDLAPLFP----------VHRLDRLVSGLLILARN 205
P ++ VHP G + K V G+L H+ A VHRLD+ SGLL++A+N
Sbjct: 97 PKNLVVHPGNGNWDKTLVNGLL---HEFATNLSDVNGEIRPGIVHRLDKDTSGLLLVAKN 153
Query: 206 ASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY-NASAGRSTAESGDSLGDT 264
+Q+E ++ ++YIA V G P + +++ I N + + S +S
Sbjct: 154 NQAHKYLAKQLENHEIERKYIAIVVGKIPHTKMRINLPIGRDNQNRTKKVVSSFNS---- 209
Query: 265 PLKGKAACTKFTRIST----NGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T I+T N SIV C TGRTHQIRVHL + GYPI D +Y
Sbjct: 210 ----KNAITNVELINTFVYKNEHFSIVKCILETGRTHQIRVHLSHIGYPIYGDPVY 261
>gi|449094239|ref|YP_007426730.1| hypothetical protein C663_1590 [Bacillus subtilis XF-1]
gi|449028154|gb|AGE63393.1| hypothetical protein C663_1590 [Bacillus subtilis XF-1]
Length = 303
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMA--WDVSILQKEPDVLTVCKPP 158
VK G++ V+ V +Y ++ +++ + E V+A D+ I ++ DVL V KP
Sbjct: 37 VKDGQVVVNGSAVKANYKIQPGDQVTVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPR 96
Query: 159 SVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V L A DL+ + VHR+D+ SGLL++A+N +
Sbjct: 97 GMVVHPAPGHLTGTLVNGLMAHCTDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDMAHES 156
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q+ V ++Y A V+G+ + +D I + +S + D GK+A
Sbjct: 157 LVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTVTRD--------GKSA 208
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + ++V C+ TGRTHQIRVH++Y G+P+A D Y
Sbjct: 209 VTHFHVLERFQDFTLVECQLETGRTHQIRVHMKYIGFPLAGDPKY 253
>gi|422327552|ref|ZP_16408579.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
6_1_45]
gi|371663392|gb|EHO28582.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
6_1_45]
Length = 304
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 108/224 (48%), Gaps = 21/224 (9%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKISHFLHRH-----EPPVMAWDVSILQKEPDVLTVCKPPS 159
G I V++ V +Y VK+ I+ + P M DV ++ DV+ + KP +
Sbjct: 39 GSILVNQNAVKANYKVKADDCITAVFNDEMEMEARPEKMELDVRY--EDEDVIVINKPKN 96
Query: 160 VPVHPCGQYRKNTVV-GILQAEHDLA----PLFP--VHRLDRLVSGLLILARNASKADLF 212
+ VHP + T+V G+L DL+ L P VHR+D+ +GLLI+A+N
Sbjct: 97 IVVHPAAGNQSGTLVNGLLYHCKDLSGINGTLRPGIVHRIDKDTTGLLIIAKNDLAHASL 156
Query: 213 RQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAAC 272
+Q+++ V + Y A V+GV +D A GR + + T K A
Sbjct: 157 SKQLQSKTVNRLYYALVHGVIQHDFGTID------APIGRDVKDR-QKMAVTATNSKDAR 209
Query: 273 TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F I +++V C TGRTHQIRVH+QY G+P+ D Y
Sbjct: 210 THFQVIERFENYTLVECRLETGRTHQIRVHMQYIGHPVVGDEKY 253
>gi|359781624|ref|ZP_09284848.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
psychrotolerans L19]
gi|359370688|gb|EHK71255.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
psychrotolerans L19]
Length = 317
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 115/251 (45%), Gaps = 17/251 (6%)
Query: 77 WAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHR 132
+AG+ I + KG P ++ G ++V++ + Y +++ +I
Sbjct: 20 YAGQRIDNFLRTHLKGAPKTLIYRILRKGEVRVNKGRIKPDYRLQAGDQIRVPPLRLSEP 79
Query: 133 HEPPVMAWDV------SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
EP +A + SI+ ++ ++ + KP + VH + Q D +
Sbjct: 80 DEPAPLARGLLERLEDSIVHEDKALIVINKPAGIAVHGGSGLSGGVIEVFRQLRPDARDI 139
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SGLL++A+ S + + V KRY A V G +P ++ + +
Sbjct: 140 ELVHRLDRDTSGLLMIAKKRSMLRFLHEALRGDGVDKRYHALVRGHWPAAKKKISAPLLK 199
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
N T SG+ + + +GK A T+F + G ++V P+TGRTHQIRVH ++
Sbjct: 200 N------TLRSGERMVEVNDEGKEALTEFRVLRRYGEFATLVEARPVTGRTHQIRVHARH 253
Query: 306 TGYPIANDMLY 316
G+ IA D Y
Sbjct: 254 AGHAIAGDPKY 264
>gi|284007272|emb|CBA72588.1| 23S rRNA pseudouridylate synthase C [Arsenophonus nasoniae]
Length = 315
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 120/264 (45%), Gaps = 26/264 (9%)
Query: 68 EFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-------- 119
+F++ + N AG+ I + KG P ++ G ++++ + Y
Sbjct: 8 QFVT-IDNDEAGQRIDNFLLTRLKGVPKSMIYRIIRKGEVRINSGRIKPEYKIQAGDLIR 66
Query: 120 ---VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGI 176
V+ ++K + V A IL ++ +L + KP + VH GI
Sbjct: 67 IPPVRQAEKQQTVISAKLDKVAALSDCILYEDDHLLVLNKPSGMAVHGGS----GVNFGI 122
Query: 177 LQAEHDLAP----LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGV 232
++A L P L VHRLDR SG+L++A+ S + QQ+ ++ K+Y+A V G
Sbjct: 123 IEALRILRPEARFLELVHRLDRETSGVLLIAKKRSALRVLHQQLRLKQMQKQYLALVKGQ 182
Query: 233 FPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPI 292
+P +V+ A ++ +SG+ + GK + T F ++V PI
Sbjct: 183 WPSHIKVI------QAPLLKNILQSGERIVKVGTDGKYSETHFKIEERFSNATLVKASPI 236
Query: 293 TGRTHQIRVHLQYTGYPIANDMLY 316
TGRTHQIRVH QY +PIA D Y
Sbjct: 237 TGRTHQIRVHAQYAKHPIACDNRY 260
>gi|261367348|ref|ZP_05980231.1| ribosomal large subunit pseudouridine synthase D [Subdoligranulum
variabile DSM 15176]
gi|282570108|gb|EFB75643.1| pseudouridine synthase, RluA family [Subdoligranulum variabile DSM
15176]
Length = 299
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 97/182 (53%), Gaps = 23/182 (12%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTV----VGILQAEHDLAPLFPVHRLDRLVS 197
+SI+ ++ + KP + VHP Y +T+ + LQ++ PV+R+D+ S
Sbjct: 78 LSIVYEDEFAAVLDKPAGLAVHPTLNYPDHTLANGWIYYLQSQGKNGVFRPVNRIDKNTS 137
Query: 198 GLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAES 257
GL++ A+NA A L AG+ K Y+A V G P G V+ I
Sbjct: 138 GLVLCAQNAFAAPLL-----AGQAKKCYLAIVQGSLPLGPGRVEAPIG----------RR 182
Query: 258 GDSLGD---TPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDM 314
GDS+ TP +GK + T++T ++ + HS+V C P TGRTHQIRVH+ Y G+P+A D
Sbjct: 183 GDSIIGRCVTP-EGKYSLTEYTVLAASAEHSLVACIPRTGRTHQIRVHMAYIGHPLAGDT 241
Query: 315 LY 316
LY
Sbjct: 242 LY 243
>gi|153814897|ref|ZP_01967565.1| hypothetical protein RUMTOR_01112 [Ruminococcus torques ATCC 27756]
gi|317500410|ref|ZP_07958634.1| pseudouridine synthase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089583|ref|ZP_08338482.1| hypothetical protein HMPREF1025_02065 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438899|ref|ZP_08618520.1| hypothetical protein HMPREF0990_00914 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145847928|gb|EDK24846.1| pseudouridine synthase, RluA family [Ruminococcus torques ATCC
27756]
gi|316898165|gb|EFV20212.1| pseudouridine synthase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330404951|gb|EGG84489.1| hypothetical protein HMPREF1025_02065 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336017389|gb|EGN47151.1| hypothetical protein HMPREF0990_00914 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 303
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 117/253 (46%), Gaps = 24/253 (9%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
+G+ I +E + Y +K G+I V++ V +Y + + KI F+ +P V
Sbjct: 11 SGERIDRFLSENLENLSRSYIQKLLKDGKISVNQSSVKPNYKISENDKIEVFIP--DPEV 68
Query: 138 MAW-----DVSILQKEPDVLTVCKPPSVPVHPC-GQYRKNTVVGILQAEHD--------L 183
+ + IL ++ D+L V KP ++ VHP G Y V ++ D L
Sbjct: 69 LDILPENIPLDILYEDSDILIVNKPKNMVVHPAPGHYEHTLVNAVMYHCKDNLSGINGIL 128
Query: 184 APLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVN 243
P VHR+D +G L++ +N + +Q++ + +RY A V+G E VV
Sbjct: 129 RPGI-VHRIDMDTTGSLLICKNDKAHQIIAEQLKEHSITRRYHAIVHGKIKEDNGVV--- 184
Query: 244 INYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHL 303
NA GR + + GK A T +T + ++ + CE TGRTHQIRVH+
Sbjct: 185 ---NAPIGRHPIDR-KKMSTKAKNGKHAVTHYTVLRRFKDYTYIECELETGRTHQIRVHM 240
Query: 304 QYTGYPIANDMLY 316
G+PI D +Y
Sbjct: 241 ASIGHPILGDSMY 253
>gi|427392578|ref|ZP_18886583.1| RluA family pseudouridine synthase [Alloiococcus otitis ATCC 51267]
gi|425731258|gb|EKU94077.1| RluA family pseudouridine synthase [Alloiococcus otitis ATCC 51267]
Length = 304
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 29/231 (12%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM-------AWDVSILQKEPDVLTV 154
++ ++ V+ + V +Y V K+ + PPV A V I+ ++ D+ V
Sbjct: 36 IQTDQVTVNGQAVKANYQVAKGDKVVLTI----PPVQEVNLEAEAIPVPIVYQDSDLAVV 91
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHD--------LAPLFPVHRLDRLVSGLLILARNA 206
KP ++ VHP + +T+V L + D L P VHR+D+ SGLL++A+N
Sbjct: 92 NKPQNMVVHPSLGHPDHTLVNALLYQLDNLSGINGELRPGI-VHRIDKDTSGLLVVAKND 150
Query: 207 SKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL 266
+Q++ V + Y+A V+G P + +D I ++ + A + +
Sbjct: 151 LAHQSLSKQLKDKTVDRHYLALVHGHVPHPKGTIDAPIGRDSKDRKKYAVTEN------- 203
Query: 267 KGKAACTKFTRISTNGT-HSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F I G +S++ C+ TGRTHQIRVHL Y G+P+A D LY
Sbjct: 204 -GKEAITHFDLIRYFGQDYSLIQCQLETGRTHQIRVHLAYIGFPLAGDPLY 253
>gi|289208370|ref|YP_003460436.1| pseudouridine synthase [Thioalkalivibrio sp. K90mix]
gi|288944001|gb|ADC71700.1| pseudouridine synthase, RluA family [Thioalkalivibrio sp. K90mix]
Length = 328
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 117/258 (45%), Gaps = 20/258 (7%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS--YTVKSSQKISHF- 129
V R G+ + + E KG P V+ G I+VD V+ +V S ++
Sbjct: 19 VTERGDGQRLDNFLLRELKGVPKSLIYRLVRKGAIRVDGRRAKVTQRLSVGSEVRVPDLD 78
Query: 130 ----LHRHEPPVMAWDV--SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDL 183
+ R PP + + SIL ++ VL + KP + VH GI++A L
Sbjct: 79 RPEAVERDIPPGVLDRLRRSILHEDDQVLVLDKPSGLAVHGG----SGLAFGIIEAMRQL 134
Query: 184 AP---LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVV 240
P L HRLDR SG L+LA++ S F + G+V KRY+A G FP + +V
Sbjct: 135 RPGSELELGHRLDRETSGCLLLAKSRSGLQDFHAALREGRVEKRYLALQVGAFPSDQPIV 194
Query: 241 -DVNI-NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
D I + G+ +G+ P ++A ++F + G+ + TGRTHQ
Sbjct: 195 CDEPIASSRGPDGKRRMRAGEDA--DPESARSAISQFVPLERYGSFQLAEVRIGTGRTHQ 252
Query: 299 IRVHLQYTGYPIANDMLY 316
IRVH Q G+P+ D Y
Sbjct: 253 IRVHGQAIGHPVGGDHDY 270
>gi|293553487|ref|ZP_06674115.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1039]
gi|430833308|ref|ZP_19451321.1| RluA family pseudouridine synthase [Enterococcus faecium E0679]
gi|291602364|gb|EFF32588.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1039]
gi|430486763|gb|ELA63599.1| RluA family pseudouridine synthase [Enterococcus faecium E0679]
Length = 303
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + V+ + V +Y VK I+ + P DV +I+ ++ DV +
Sbjct: 35 LKNGAVSVNGQPVKANYKVKQGDDITVLI----PEPETLDVVPENIPLTIVYEDEDVAVI 90
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 91 NKPQGMVVHPSAGHTHGTMVNALMYHIKDLSTINGVIRPGIVHRIDKDTSGLLMVAKNDQ 150
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ QQ++ +++Y+A V+G P + + NA GRS + +
Sbjct: 151 AHESLAQQLKDKTSLRKYVALVHGEIPHEKGTI------NAPIGRS--KENRKMQAIRED 202
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + ++V + TGRTHQIRVH++Y GYP+A D +Y
Sbjct: 203 GKPAVTHFTVLERFEGFTLVELKLETGRTHQIRVHMKYIGYPLAGDPVY 251
>gi|398847229|ref|ZP_10604158.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM84]
gi|398251783|gb|EJN37011.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM84]
Length = 318
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ V Y +++ + R
Sbjct: 21 AGQRIDNFLITALKGVPKTLVYRILRKGEVRVNKGRVKPEYKLQAGDIVRVPPVRLPERD 80
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ + KP + VH + + Q D L
Sbjct: 81 EPAPVAPGLLQRLEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQLRPDAKELE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SGLL++A+ S + V KRY+A V G +P ++ V N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWPTSKKQV------N 194
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQYT 306
A +S SG+ + + +GK A T F + G +IV PITGRTHQIRVH +
Sbjct: 195 APLLKSNLRSGERMVEVNDEGKEALTLFRVLRRFGEFATIVEARPITGRTHQIRVHTLHA 254
Query: 307 GYPIANDMLY 316
G+ IA D Y
Sbjct: 255 GHMIAGDSKY 264
>gi|172038568|ref|YP_001805069.1| pseudouridine synthase [Cyanothece sp. ATCC 51142]
gi|171700022|gb|ACB53003.1| probable pseudouridine synthase [Cyanothece sp. ATCC 51142]
Length = 304
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 119/250 (47%), Gaps = 14/250 (5%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHR 132
+K + AG T+++ + + + ++ + ++ +D ++V +++ Q +S+
Sbjct: 14 IKQKNAGLTVLEYYTQNYHHSSSQQWLERILWAQVLLDNQVVTPETILQTGQWLSY---- 69
Query: 133 HEPPVMAWDV----SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP 188
H PP DV ++ ++ +L + KP +PV P G + ++T++G L+ ++ +FP
Sbjct: 70 HRPPWKEADVPLDFDLIYEDHHILVINKPSGLPVLPGGGFLEHTLLGQLKKQYPKEKVFP 129
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNA 248
+HRL R SGL+++ + A +Q+ K+ K Y + GE + N
Sbjct: 130 IHRLGRGTSGLMLMGKTAIARSHLTRQMREHKMRKVYRTLI------GENNLPDYFNIEH 183
Query: 249 SAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGY 308
G+ + + GK A ++ I ++V +TGR HQIR+HL GY
Sbjct: 184 PIGKISDPVLGYIYGAKADGKDAYSQCQIIERYSDKTLVEVTILTGRPHQIRIHLATIGY 243
Query: 309 PIANDMLYLC 318
P+ D LY+
Sbjct: 244 PLLGDPLYVV 253
>gi|299535889|ref|ZP_07049209.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZC1]
gi|424738829|ref|ZP_18167258.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZB2]
gi|298728641|gb|EFI69196.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZC1]
gi|422947313|gb|EKU41710.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZB2]
Length = 303
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 110/222 (49%), Gaps = 18/222 (8%)
Query: 105 GRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA---WDVSILQKEPDVLTVCKPPSVP 161
G I+V+ + V Y VK+ I+ + E + D+ I+ ++ DVL V KP +
Sbjct: 40 GVIKVNGDAVKAKYKVKAGDIIAIDVPEVEELDVVPENLDLDIVYEDADVLVVNKPKGMV 99
Query: 162 VHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADLFRQ 214
VHP + T+V G++ DL+ L P VHR+D+ SGLL++A+N + +
Sbjct: 100 VHPAPGHMGGTLVNGLMYHCKDLSGINGVLRPGIVHRIDKDTSGLLMVAKNDTAHESLVN 159
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTK 274
Q+ V ++YIA V+G + +D I + + A + GK A T
Sbjct: 160 QLVNKTVTRKYIALVHGHIAHDKGTIDAPIGRDQKDRQKQAVVDN--------GKHAVTH 211
Query: 275 FTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
F + G +++V C TGRTHQIRVH+ Y G+P+ D Y
Sbjct: 212 FQVVERFGDYTLVECRLETGRTHQIRVHMNYIGFPLVGDPKY 253
>gi|156934429|ref|YP_001438345.1| 23S rRNA pseudouridylate synthase C [Cronobacter sakazakii ATCC
BAA-894]
gi|156532683|gb|ABU77509.1| hypothetical protein ESA_02260 [Cronobacter sakazakii ATCC BAA-894]
Length = 317
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 115/258 (44%), Gaps = 17/258 (6%)
Query: 70 ISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT---------- 119
I V AG+ I + + KG P ++ G ++V+++ + Y
Sbjct: 10 IVAVSADQAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69
Query: 120 -VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQ 178
V+ +++ + H V A IL ++ +L + KP VH + G+
Sbjct: 70 PVRVAEREEEAVSPHLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129
Query: 179 AEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQ 238
+ L VHRLDR SG+L++A+ S +Q+ + K Y+A V G + +
Sbjct: 130 LRPEARFLELVHRLDRDTSGVLLVAKKRSALRYLHEQLREKGMQKDYLALVRGQWQSHVK 189
Query: 239 VVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
N A ++ +SG+ + +GK + T+F ++V C P+TGRTHQ
Sbjct: 190 ------NVQAPLLKNILQSGERIVRVNQEGKPSETRFKVEERFAIATLVRCSPVTGRTHQ 243
Query: 299 IRVHLQYTGYPIANDMLY 316
IRVH QY G+PIA D Y
Sbjct: 244 IRVHTQYAGHPIAFDDRY 261
>gi|428279141|ref|YP_005560876.1| hypothetical protein BSNT_02552 [Bacillus subtilis subsp. natto
BEST195]
gi|291484098|dbj|BAI85173.1| hypothetical protein BSNT_02552 [Bacillus subtilis subsp. natto
BEST195]
Length = 303
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMA--WDVSILQKEPDVLTVCKPP 158
VK G++ V+ V +Y ++ +++ + E V+A D+ I ++ DVL V KP
Sbjct: 37 VKDGQVVVNGSAVKANYKIQPGDQVTVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPR 96
Query: 159 SVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V L A DL+ + VHR+D+ SGLL++A+N +
Sbjct: 97 GMVVHPAPGHLTGTLVNGLMAHCTDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDMAHES 156
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q+ V ++Y A V+G+ + +D I + +S + D GK+A
Sbjct: 157 LVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTVTRD--------GKSA 208
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + ++V C+ TGRTHQIRVH++Y G+P+A D Y
Sbjct: 209 VTHFHVLERFQDFTLVECQLETGRTHQIRVHMRYIGFPLAGDPKY 253
>gi|258405122|ref|YP_003197864.1| RluA family pseudouridine synthase [Desulfohalobium retbaense DSM
5692]
gi|257797349|gb|ACV68286.1| pseudouridine synthase, RluA family [Desulfohalobium retbaense DSM
5692]
Length = 547
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 91/189 (48%), Gaps = 28/189 (14%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP------------V 189
V ++ +PDV+ V K V VHP T+V H LA L+P V
Sbjct: 91 VEVVYSDPDVVVVNKAAGVTVHPGTGCESGTLV------HHLAALYPELARFDGERPGVV 144
Query: 190 HRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNAS 249
HRLD+ SGLL +A N S + +V K Y+ V+G PE E VD + +
Sbjct: 145 HRLDKDTSGLLTVALNESARLALTRSFARREVDKEYLTLVHG-RPEAEGTVDHPLGRDP- 202
Query: 250 AGRSTAESGDSLGDTPLKGKAACTKFTRIST--NGTHSIVLCEPITGRTHQIRVHLQYTG 307
+S + P GK A T+F R+ T +G S++ +TGRTHQIRVH+ Y G
Sbjct: 203 ------QSKIRMAVVPRGGKEALTRFKRVWTSPDGRVSLLRVRILTGRTHQIRVHMAYLG 256
Query: 308 YPIANDMLY 316
+P+ D LY
Sbjct: 257 FPLVGDALY 265
>gi|379795562|ref|YP_005325560.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872552|emb|CCE58891.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 305
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + ++++V +Y VK + +I E ++ D+ I ++ DV V
Sbjct: 38 IKAGLVVANDKVVKSNYKVKLNDRIV----VTEKEIVEADILPENLNLDIYYEDDDVAVV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ +L+ + VHR+D SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTNTLVNGLMYQIKNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDI 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ V ++YIA V+G P +D I N + +S A D
Sbjct: 154 AHRGLVEQLMDKSVKRKYIALVHGNIPHDYGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +++V C+ TGRTHQIRVH++Y G+P+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|425058453|ref|ZP_18461834.1| pseudouridine synthase, RluA family [Enterococcus faecium 504]
gi|430836003|ref|ZP_19453988.1| RluA family pseudouridine synthase [Enterococcus faecium E0680]
gi|403038394|gb|EJY49610.1| pseudouridine synthase, RluA family [Enterococcus faecium 504]
gi|430488843|gb|ELA65491.1| RluA family pseudouridine synthase [Enterococcus faecium E0680]
Length = 303
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + V+ + V +Y VK I+ + P DV +I+ ++ DV +
Sbjct: 35 LKNGAVSVNGQPVKANYKVKQGDDITVLI----PEPETLDVVPENIPLTIVYEDEDVAVI 90
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V L DL+ + VHR+D+ SGLL++A+N
Sbjct: 91 NKPQGMVVHPSAGHTHGTMVNALMYHIKDLSTINGVIRPGIVHRIDKDTSGLLMVAKNDQ 150
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ QQ++ +++Y+A V+G P + + NA GRS + +
Sbjct: 151 AHESLAQQLKDKTSLRKYVALVHGEIPHEKGTI------NAPIGRS--KENRKMQAIRED 202
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + ++V + TGRTHQIRVH++Y GYP+A D +Y
Sbjct: 203 GKPAVTHFTVLERFEGFTLVELKLETGRTHQIRVHMKYIGYPLAGDPVY 251
>gi|394987721|ref|ZP_10380560.1| hypothetical protein SCD_00121 [Sulfuricella denitrificans skB26]
gi|393792940|dbj|GAB70199.1| hypothetical protein SCD_00121 [Sulfuricella denitrificans skB26]
Length = 329
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 128/273 (46%), Gaps = 36/273 (13%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKI--SHFLHRHEPPVMAWDVS--ILQKEPDVLTVCKP 157
+K R+ +D E V TV + K+ LH E P A D++ I+ ++ +L V KP
Sbjct: 57 IKDKRVTLDGECVASKQTVWAGSKVRVEPELHPSETPFSAEDIALEIMYEDDALLVVNKP 116
Query: 158 PSVPVHPCGQYRKNTVVGILQAEHDLAPLFP----VHRLDRLVSGLLILARN-ASKADLF 212
+ VHP + T++ L P VHRLD+ SGLL++A+ S+ DL
Sbjct: 117 AGLVVHPGSGNWQGTLLNALLYHAPQLACIPRAGIVHRLDKDTSGLLVVAKTLTSQTDLV 176
Query: 213 RQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAAC 272
RQ ++A V + Y+A V G+ G+ VD + + S A + GKAA
Sbjct: 177 RQ-LQARSVKRDYLAVVQGLV-SGDGKVDAPLGRHPSQRVKMAIVHN--------GKAAV 226
Query: 273 TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY----------LCEHVT 322
T +T + H+++ C TGRTHQIRVH+Q G+P+ D +Y L + V
Sbjct: 227 THYTVLEHFDRHTLIRCSLETGRTHQIRVHMQSIGHPLVGDPVYGGRPLNLPPLLSDVVK 286
Query: 323 H--REGMSADRAAAYSHHSPPPVSSDKSESSSE 353
H R+ + A+R PVS + E E
Sbjct: 287 HLGRQALHAERLGLIH-----PVSGEAMEWQVE 314
>gi|448746129|ref|ZP_21727797.1| Pseudouridine synthase, RluC/RluD [Halomonas titanicae BH1]
gi|445565991|gb|ELY22098.1| Pseudouridine synthase, RluC/RluD [Halomonas titanicae BH1]
Length = 313
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 16/249 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
AG+ I + KG P V+ G ++V+++ V V Y +++ + R P
Sbjct: 17 AGQRIDNFLMTRLKGAPRALIYRIVRKGEVRVNKKRVKVDYRLQAGDLVRVPPLRLAPRE 76
Query: 138 MAWDVS----------ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
+VS ++ + PD + + KP + VH + + + Q DL+ L
Sbjct: 77 AVKEVSDNLRDLLVGSVIMEGPDWMVLNKPSGLAVHGGSGVKIGLIEALRQVRDDLSFLE 136
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYN 247
VHRLDR SG L+LA++ + ++ + KRY+A V+G +P + ++
Sbjct: 137 LVHRLDRDTSGCLLLAKSRDALVTLNESLKKHGMDKRYLALVSGRWPARKTYESARLD-- 194
Query: 248 ASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTG 307
R A +G+ GK + T F+ + T +++ EP+TGRTHQIRVH + G
Sbjct: 195 ----RFDAGNGERRVRVDPNGKVSRTHFSVVETFEKVTLIEAEPVTGRTHQIRVHAAHAG 250
Query: 308 YPIANDMLY 316
+ + D Y
Sbjct: 251 HALLGDDKY 259
>gi|414155728|ref|ZP_11412038.1| RluA family pseudouridine synthase [Streptococcus sp. F0442]
gi|410872663|gb|EKS20604.1| RluA family pseudouridine synthase [Streptococcus sp. F0442]
Length = 296
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 28/230 (12%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM------AWDV--SILQKEPDVLT 153
+K G++ V+ + YTVK I ++E P M A D+ I+ ++ DV+
Sbjct: 31 IKEGKVLVNGTVKKAKYTVKEGDII-----QYEVPEMVEISYEAEDLPLDIVYEDQDVVV 85
Query: 154 VCKPPSVPVHPCGQYRKNTVV-GILQAEHDLA----PLFP--VHRLDRLVSGLLILARNA 206
V KP + VHP + T+V +L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 86 VNKPQGMVVHPSAGHTSGTLVNALLYHVKDLSGINGELRPGIVHRIDKDTSGLLMVAKND 145
Query: 207 SKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL 266
++++ K +++Y A V+G P +++ I + + A +
Sbjct: 146 QAHVALAEELKDKKSLRKYWAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA-------- 197
Query: 267 KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
KGK A T+F + G +++V + TGRTHQIRVH+ Y G+P+A D Y
Sbjct: 198 KGKPAVTRFQVLERFGDYTLVELQLETGRTHQIRVHMAYIGHPVAGDPAY 247
>gi|333394895|ref|ZP_08476714.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
coryniformis subsp. coryniformis KCTC 3167]
Length = 304
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 111/228 (48%), Gaps = 25/228 (10%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTV 154
+K +QV+ ++ Y V + +I+ + P A DV I+ ++ DVL V
Sbjct: 37 IKTEHVQVNGQLEKAKYAVAAGDQITVSI----PAPAALDVQPQNIPLDIVYEDDDVLVV 92
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP + ++T+V L L+ + VHR+D+ SGLL++A+N
Sbjct: 93 NKPQGMVVHPAPGHPQDTLVNALLYHSPLSTINGVIRPGIVHRIDKDTSGLLMVAKNDQA 152
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
Q++A + Y+A V+GV E + +D I A A + G G
Sbjct: 153 HISLAAQLQAKTSQREYLALVHGVIKEDKGTIDAPI---ARAKNDRKKQAVVAG-----G 204
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T F + ++++ C TGRTHQIRVH++Y G+P+A D LY
Sbjct: 205 KHAVTHFEVLERFNEYTLIKCILETGRTHQIRVHMKYIGHPVAGDPLY 252
>gi|90962428|ref|YP_536344.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius UCC118]
gi|90821622|gb|ABE00261.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius UCC118]
Length = 304
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 19/231 (8%)
Query: 107 IQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD--------VSILQKEPDVLTVCKPP 158
+++D + P++ V+ +QKI E + + I+ + D+L V KP
Sbjct: 43 VKIDGKYYPMNTIVQGNQKIELIFEGDEFRTATSNYIVDKGRKIPIIFENDDLLVVNKPQ 102
Query: 159 SVPVHPCGQYRKNTVVGILQAEHDLAPLFP--VHRLDRLVSGLLILARNASKADLFRQQI 216
+ HP Y T+V + D P VHRLD L SG +I+A+N + + I
Sbjct: 103 GIKSHPNQPYETGTLVNYIAGYLDARDEHPYMVHRLDMLTSGAMIVAKNPVVVPILTRLI 162
Query: 217 EAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFT 276
+ + Y+A G+F + E V+D+ I + + R D +G P A T++
Sbjct: 163 STHTIKRDYLAITEGIFDQKEGVIDLPIGKDENDKRK--RKVDGIGALP-----ARTRYQ 215
Query: 277 RISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGM 327
I +S+V TGRTHQ+RVHL G+PI D+LY HV+ + M
Sbjct: 216 VIKEFENNSVVYLRLETGRTHQLRVHLSAMGHPIVGDVLY--NHVSEEKHM 264
>gi|443242482|ref|YP_007375707.1| pseudouridine synthase [Nonlabens dokdonensis DSW-6]
gi|442799881|gb|AGC75686.1| pseudouridine synthase [Nonlabens dokdonensis DSW-6]
Length = 346
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 110/227 (48%), Gaps = 15/227 (6%)
Query: 101 AVKCGRIQVDEEMVPVSYTVKSSQKIS-HFLHR-HEPPVMAWDV--SILQKEPDVLTVCK 156
+K G + V+ E+V +Y VK I F H HE ++A D+ I+ ++ ++ V K
Sbjct: 51 GIKEGAVTVNGEIVKSNYKVKPHDDIRVSFDHPPHESLLIAEDIPLDIVYEDDHLVVVNK 110
Query: 157 PPSVPVHPC-GQYRKNTVVGILQAEHDL------APLFPVHRLDRLVSGLLILARNASKA 209
P + VHP G Y + ++ +L P VHR+D+ SGLL++A+
Sbjct: 111 PAGMVVHPGHGNYSGTLINALIHHFENLPNNSSNRPGL-VHRIDKDTSGLLVVAKTEEAM 169
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
Q A + YIA V G F E V+ NI + ++ ++ L D KGK
Sbjct: 170 AYLSAQFAAKTSEREYIAIVWGNFTEKSGTVEGNIGRHP---KNRLQNTVWLDDEAYKGK 226
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T +T G S++ C TGRTHQIRVH++Y G+ + ND Y
Sbjct: 227 PAVTHYTVTEDLGYVSVISCRLETGRTHQIRVHMKYIGHTLFNDERY 273
>gi|387879746|ref|YP_006310049.1| RluA family pseudouridine synthase [Streptococcus parasanguinis
FW213]
gi|386793197|gb|AFJ26232.1| RluA family pseudouridine synthase [Streptococcus parasanguinis
FW213]
Length = 296
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFL-HRHEPPVMAWDV--SILQKEPDVLTVCKPP 158
+K G++ V+ + YTVK I + + E A D+ I+ ++ DV+ V KP
Sbjct: 31 IKEGKVLVNGTVKKAKYTVKEGDIIQYEVPEVEEVSYEAEDLPLDIVYEDQDVVVVNKPQ 90
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLA----PLFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V +L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 GMVVHPSAGHTSGTLVNALLYHIKDLSGINGELRPGIVHRIDKDTSGLLMVAKNDQAHVA 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
++++ K +++Y A V+G P +++ I + + A + KGK A
Sbjct: 151 LAEELKDKKSLRKYWAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGKPA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+F + G +++V + TGRTHQIRVH+ Y G+P+A D Y
Sbjct: 203 VTRFQVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPAY 247
>gi|82750802|ref|YP_416543.1| hypothetical protein SAB1061 [Staphylococcus aureus RF122]
gi|82656333|emb|CAI80750.1| conserved hypothetical protein [Staphylococcus aureus RF122]
Length = 305
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + ++++V +Y VK + I E V+ D+ I ++ DV V
Sbjct: 38 IKAGLVVANDKVVKSNYKVKLNDHIV----VTEKEVVEADILPENLNLDIYYEDDDVAVV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ +L+ + VHR+D SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTNTLVNGLMYQIKNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDI 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ V ++YIA V+G P +D I N + +S A D
Sbjct: 154 AHRELVEQLMDKSVKRKYIALVHGNIPHDYGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +++V C+ TGRTHQIRVH++Y G+P+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|387128795|ref|YP_006297400.1| ribosomal large subunit pseudouridine synthase C [Methylophaga sp.
JAM1]
gi|386275857|gb|AFI85755.1| Ribosomal large subunit pseudouridine synthase C [Methylophaga sp.
JAM1]
Length = 318
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 126/261 (48%), Gaps = 21/261 (8%)
Query: 68 EFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS 127
+FI ++ AG+ I + KG P A++ G ++V++ + +Y +++ ++
Sbjct: 12 QFID-IRADQAGQRIDNFLITLEKGVPKSRIYRALRKGEVRVNKGRIKQTYRLQAGDQVR 70
Query: 128 HFLHRHEPPVM----------AWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTV--VG 175
R V+ A + +IL ++ D+L + KP + VH Q + + +
Sbjct: 71 VPPLRVSEKVVITELSESLTDALESAILMEDDDILVINKPAGLAVHAGSQIQLGVIEAMR 130
Query: 176 ILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
I++ E+ L VHRLDR SG L+LA++ + +QQ++A + KRY+ G +P
Sbjct: 131 IIRPENRFVEL--VHRLDRDTSGCLVLAKSRAALLNLQQQMKASETDKRYLTLTRGKWPA 188
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGR 295
E +VD+ + N+ + SG+ + + GK + T F +V + TGR
Sbjct: 189 QENIVDLALQKNSLS------SGERMVVPDINGKKSKTLFEVKQEFSGCQLVTAKLYTGR 242
Query: 296 THQIRVHLQYTGYPIANDMLY 316
THQIRVH +P+A D Y
Sbjct: 243 THQIRVHSASQSHPVAGDEKY 263
>gi|399052196|ref|ZP_10741761.1| pseudouridine synthase, RluA family [Brevibacillus sp. CF112]
gi|433545647|ref|ZP_20501997.1| pseudouridine synthase [Brevibacillus agri BAB-2500]
gi|398050062|gb|EJL42452.1| pseudouridine synthase, RluA family [Brevibacillus sp. CF112]
gi|432183045|gb|ELK40596.1| pseudouridine synthase [Brevibacillus agri BAB-2500]
Length = 309
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 114/227 (50%), Gaps = 21/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA-----WDVSILQKEPDVLTVCK 156
+K GR+ V+ E + +Y +++ +++ L P MA + I+ ++ DV+ V K
Sbjct: 43 IKEGRVTVNGEPIKSNYKLQAEDEVT--LRVPPPKEMAIKPEPMPLEIVYEDSDVVVVNK 100
Query: 157 PPSVPVHPC-GQYRKNTVVGILQAEHDLA----PLFP--VHRLDRLVSGLLILARNASKA 209
P + VHP G Y V G+L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 101 PRGLVVHPAPGHYSGTLVNGLLAHCKDLSGINGVLRPGIVHRIDKDTSGLLMVAKNDKAH 160
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+Q++ V + Y+A V+GV P +D I + + A ++ K
Sbjct: 161 VGLAEQLKEHSVTRTYVAIVHGVIPHEMGTIDAPIGRDPKNRQQMAVVFEN-------SK 213
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F + +++V + TGRTHQIRVH++Y GYP+A D Y
Sbjct: 214 PAVTHFIVLERFKEYTLVELKLETGRTHQIRVHMKYIGYPLAGDPKY 260
>gi|270290265|ref|ZP_06196490.1| ribosomal large subunit pseudouridine synthase D [Pediococcus
acidilactici 7_4]
gi|304384921|ref|ZP_07367267.1| ribosomal large subunit pseudouridine synthase D [Pediococcus
acidilactici DSM 20284]
gi|418069132|ref|ZP_12706412.1| ribosomal large subunit pseudouridine synthase D [Pediococcus
acidilactici MA18/5M]
gi|270281046|gb|EFA26879.1| ribosomal large subunit pseudouridine synthase D [Pediococcus
acidilactici 7_4]
gi|304329115|gb|EFL96335.1| ribosomal large subunit pseudouridine synthase D [Pediococcus
acidilactici DSM 20284]
gi|357537865|gb|EHJ21888.1| ribosomal large subunit pseudouridine synthase D [Pediococcus
acidilactici MA18/5M]
Length = 302
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 21/228 (9%)
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM-----AWDVSILQKEPDVLTV 154
S +K G+I V++ Y VK + ++ + +P + D+ I+ ++ DV+ V
Sbjct: 34 SLIKKGQILVNDVPTTNRYQVKPNDQV--IIKLPDPVAIDVQPEKMDLDIVYEDDDVIVV 91
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASK 208
KP + VHP + T+V L A LA L P VHR+D+ SGLL++A+N
Sbjct: 92 NKPQGMVVHPAPGHDHGTLVNGLLAHTPLATINGELRPGIVHRIDKDTSGLLMVAKNDQA 151
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
+Q++ ++Y A V+G E + NA GRS + + +G
Sbjct: 152 LVSLSKQLKDKTNQRKYWAIVHGNIKEDTGTI------NAPIGRSKKDRKKMAINE--EG 203
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ A T F + G ++++ C+ TGRTHQIRVHL+Y G+P+A D LY
Sbjct: 204 RPAVTHFKVLERFGEYTLIECQLETGRTHQIRVHLKYIGHPVAGDPLY 251
>gi|421873629|ref|ZP_16305241.1| pseudouridine synthase, RluA family protein [Brevibacillus
laterosporus GI-9]
gi|372457416|emb|CCF14790.1| pseudouridine synthase, RluA family protein [Brevibacillus
laterosporus GI-9]
Length = 298
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 23/228 (10%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPP------VMAWDVSILQKEPDVLTVC 155
VK GR+ V++ + +Y V +IS R PP A D+ I+ ++ DV+ V
Sbjct: 30 VKEGRVTVNDAPIKNNYKVAMDDEISL---RVPPPKELKIEAQAMDLDIVYEDSDVVVVN 86
Query: 156 KPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP G Y V G++ DL+ + VHR+D+ SGLL++A+N
Sbjct: 87 KPRGLVVHPALGHYTGTLVNGLMYHCKDLSGINGVMRPGIVHRIDKDTSGLLMIAKNDKA 146
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
Q++ V ++Y+A V+G P +D I + ++ + G++
Sbjct: 147 HASLAAQLKEHTVNRKYVALVHGEIPHEMGTIDAPIGRDP---KNRQQMAVVFGNS---- 199
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T F + ++V + TGRTHQIRVH++Y GYP+A D Y
Sbjct: 200 KPAVTHFVVLERMKDFTLVELKLETGRTHQIRVHMKYIGYPLAGDPKY 247
>gi|381209825|ref|ZP_09916896.1| hypothetical protein LGrbi_07866 [Lentibacillus sp. Grbi]
Length = 302
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 15/182 (8%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF-------PVHRLDR 194
+SI+ ++ D++ + KP + VHP ++ T+V L D L VHR+D+
Sbjct: 79 LSIIYEDSDLMVINKPKGMVVHPSAGHQHGTLVNALLYHCDSLSLVNGEERPGIVHRIDK 138
Query: 195 LVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRST 254
SGLL++A+N + +Q+ A + +RY A V+GV ++D I + + R
Sbjct: 139 DTSGLLVVAKNDQTHTILAEQLAAKDIDRRYEAIVHGVIEHETGMIDAPIGRDRN-DRKK 197
Query: 255 AESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDM 314
G++ GKAA T F ++ + V C+ TGRTHQIRVH++Y G+P+ D
Sbjct: 198 MGVGEN-------GKAAVTHFRVLTRYKNFTHVECQLETGRTHQIRVHMKYIGFPVVGDP 250
Query: 315 LY 316
Y
Sbjct: 251 KY 252
>gi|442318156|ref|YP_007358177.1| RNA pseudouridine synthase family protein [Myxococcus stipitatus
DSM 14675]
gi|441485798|gb|AGC42493.1| RNA pseudouridine synthase family protein [Myxococcus stipitatus
DSM 14675]
Length = 345
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 109/248 (43%), Gaps = 11/248 (4%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHR 132
V+ +AG + D ++ + P + + G + DE + S V
Sbjct: 37 VEPNYAGWRLEDYLGQKLRRMPRERLAGIILRG-VHCDERRLKPSTPVYPGMAFRLRRPG 95
Query: 133 HEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRL 192
E P ++ ++ ++ +L + KP +P+HP +Y K T+V IL+ P HRL
Sbjct: 96 SEEPETPTELPVVAQDDWLLVLDKPAGLPIHPTARYHKGTLVSILRERFGERFAEPAHRL 155
Query: 193 DRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGR 252
DR SGL++ R + + + V K Y+A G E VVD I R
Sbjct: 156 DRETSGLVVCGRTTEACRVLGRLFVSRDVHKEYLAICEGHPREDSFVVDAPIAEGTELIR 215
Query: 253 STAESGDSLGDTPLKGKAACTKF---TRISTNGT-HSIVLCEPITGRTHQIRVHLQYTGY 308
P++GK + T+F R S G +++ C P TGR HQIR+HL+ G+
Sbjct: 216 IAVRI------DPVEGKPSRTRFEVLQRFSREGAPFALLRCFPETGRQHQIRIHLREAGF 269
Query: 309 PIANDMLY 316
P+ D +Y
Sbjct: 270 PLVGDKMY 277
>gi|354554091|ref|ZP_08973396.1| pseudouridine synthase, RluA family [Cyanothece sp. ATCC 51472]
gi|353553770|gb|EHC23161.1| pseudouridine synthase, RluA family [Cyanothece sp. ATCC 51472]
Length = 301
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 119/250 (47%), Gaps = 14/250 (5%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHR 132
+K + AG T+++ + + + ++ + ++ +D ++V +++ Q +S+
Sbjct: 11 IKQKNAGLTVLEYYTQNYHHSSSQQWLERILWAQVLLDNQVVTPETILQTGQWLSY---- 66
Query: 133 HEPPVMAWDV----SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP 188
H PP DV ++ ++ +L + KP +PV P G + ++T++G L+ ++ +FP
Sbjct: 67 HRPPWKEADVPLDFDLIYEDHHILVINKPSGLPVLPGGGFLEHTLLGQLKKQYPKEKVFP 126
Query: 189 VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNA 248
+HRL R SGL+++ + A +Q+ K+ K Y + GE + N
Sbjct: 127 IHRLGRGTSGLMLMGKTAIARSHLTRQMREHKMRKVYRTLI------GENNLPDYFNIEH 180
Query: 249 SAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGY 308
G+ + + GK A ++ I ++V +TGR HQIR+HL GY
Sbjct: 181 PIGKISDPVLGYIYGAKADGKDAYSQCQIIERYSDKTLVEVTILTGRPHQIRIHLATIGY 240
Query: 309 PIANDMLYLC 318
P+ D LY+
Sbjct: 241 PLLGDPLYVV 250
>gi|217961313|ref|YP_002339881.1| RluA family ribosomal large subunit pseudouridine synthase
[Bacillus cereus AH187]
gi|222097338|ref|YP_002531395.1| ribosomal large subunit pseudouridine synthase, rlud subfamily
[Bacillus cereus Q1]
gi|229140541|ref|ZP_04269096.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST26]
gi|375285818|ref|YP_005106257.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
NC7401]
gi|423353596|ref|ZP_17331223.1| RluA family pseudouridine synthase [Bacillus cereus IS075]
gi|423567211|ref|ZP_17543458.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A12]
gi|217063169|gb|ACJ77419.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH187]
gi|221241396|gb|ACM14106.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Bacillus cereus Q1]
gi|228643102|gb|EEK99378.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST26]
gi|358354345|dbj|BAL19517.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
NC7401]
gi|401089409|gb|EJP97580.1| RluA family pseudouridine synthase [Bacillus cereus IS075]
gi|401214299|gb|EJR21029.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A12]
Length = 302
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 120/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV--KCGRIQVDE-----------EMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + + R QV + + V +Y V+ + +I+ +
Sbjct: 10 AEEQKNERIDKFVAGINNEWSRTQVQQWIKDNVVTVNGKAVKGNYKVRENDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A R E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIARDKKERQSMTVDE--NGKHAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|450033910|ref|ZP_21834034.1| putative pseudouridylate synthase [Streptococcus mutans M21]
gi|450111613|ref|ZP_21862784.1| putative pseudouridylate synthase [Streptococcus mutans SM6]
gi|449196826|gb|EMB98063.1| putative pseudouridylate synthase [Streptococcus mutans M21]
gi|449223469|gb|EMC23153.1| putative pseudouridylate synthase [Streptococcus mutans SM6]
Length = 296
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 112/230 (48%), Gaps = 28/230 (12%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPP------VMAWD--VSILQKEPDVLT 153
+K G + V+ +M Y VK I R+E P +A D + I+ ++ DV
Sbjct: 31 IKAGLVLVNGKMQKAKYIVKVGDII-----RYERPQEAILDCVAQDLPIDIVYEDEDVAV 85
Query: 154 VCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNA 206
V KP + VHP + T+V +L DL+ + VHR+D+ SGLL++A+N
Sbjct: 86 VNKPQGMVVHPSVGHPSGTLVNALLFHIKDLSSINGVIRPGIVHRIDKDTSGLLMIAKND 145
Query: 207 SKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL 266
++++ K +++YIA V+G P V++ A GRS E
Sbjct: 146 QAHQALAKELKEKKSLRQYIALVHGNLPNDRGVIE------APIGRS--EKDRKKQTVTA 197
Query: 267 KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
KGK A T F + +S+V TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 198 KGKPAVTHFKVLERFDQYSLVELTLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|337282172|ref|YP_004621643.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis ATCC 15912]
gi|335369765|gb|AEH55715.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis ATCC 15912]
Length = 296
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFL-HRHEPPVMAWDV--SILQKEPDVLTVCKPP 158
+K G++ V+ + YTVK I + + E A D+ I+ ++ DV+ V KP
Sbjct: 31 IKEGKVLVNGTVKKAKYTVKEGDIIQYEVPEVEEVSYEAEDLPLDIVYEDQDVVVVNKPQ 90
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLA----PLFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V +L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 GMVVHPSAGHTSGTLVNALLYHIKDLSGINGELRPGIVHRIDKDTSGLLMVAKNDQAHVA 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
++++ K +++Y A V+G P +++ I + + A + KGK A
Sbjct: 151 LAEELKDKKSLRKYWAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGKPA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+F + G +++V + TGRTHQIRVH+ Y G+P+A D Y
Sbjct: 203 VTRFQVLERFGNYTLVELQLETGRTHQIRVHMAYIGHPVAGDPAY 247
>gi|417797265|ref|ZP_12444463.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21305]
gi|418312679|ref|ZP_12924188.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21334]
gi|418321906|ref|ZP_12933245.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus VCU006]
gi|418875131|ref|ZP_13429391.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIGC93]
gi|334267313|gb|EGL85777.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21305]
gi|365224521|gb|EHM65786.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus VCU006]
gi|365238324|gb|EHM79161.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21334]
gi|377770191|gb|EHT93953.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIGC93]
Length = 305
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + ++++V +Y VK + I E V+ D+ I ++ DV V
Sbjct: 38 IKAGLVVANDKVVKSNYKVKLNDHIV----VTEKEVVEADILPENLNLDIYYEDDDVAVV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ +L+ + VHR+D SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTNTLVNGLMYQIKNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDI 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ V ++YIA V+G P +D I N + +S A D
Sbjct: 154 AHRGLVEQLMDKSVKRKYIALVHGNIPHDYGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +++V C+ TGRTHQIRVH++Y G+P+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKNYTLVECQLETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|239636325|ref|ZP_04677327.1| ribosomal large subunit pseudouridine synthase, RluA family
[Staphylococcus warneri L37603]
gi|239597680|gb|EEQ80175.1| ribosomal large subunit pseudouridine synthase, RluA family
[Staphylococcus warneri L37603]
Length = 305
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTV 154
+K ++V++++V +Y VK + I E V+ D++ I ++ DV V
Sbjct: 38 IKEDLVKVNDKVVKPNYKVKQNDNIV----VTEQEVVDADITPENLNLDIYYEDDDVAIV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ +L+ + VHR+D SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTGTLVNGLMYQIKNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDI 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ A V ++Y+A V+G P VD I N ++ A D
Sbjct: 154 AHRGLVEQLMAKSVKRKYVALVHGNIPHDYGTVDAPIGRNKKDRQAMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + ++++ CE TGRTHQIRVH++Y G+P+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLIECELETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|206976765|ref|ZP_03237669.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus H3081.97]
gi|423374310|ref|ZP_17351648.1| RluA family pseudouridine synthase [Bacillus cereus AND1407]
gi|206745075|gb|EDZ56478.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus H3081.97]
gi|401094222|gb|EJQ02304.1| RluA family pseudouridine synthase [Bacillus cereus AND1407]
Length = 302
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 120/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV--KCGRIQVDE-----------EMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + + R QV + + V +Y V+ + +I+ +
Sbjct: 10 AEEQKNERIDKFVAGINNEWSRTQVQQWIKDNVVTVNGKAVKGNYKVRENDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A R E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIARDKKERQSMTVDE--NGKHAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|402555984|ref|YP_006597255.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
FRI-35]
gi|401797194|gb|AFQ11053.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
FRI-35]
Length = 302
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 122/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV--KCGRIQVDE----EMVPVS-------YTVKSSQKISHFLHRH 133
AEE K D +V+ + + R QV + ++V V+ Y V+ + +I+ +
Sbjct: 10 AEEQKNERIDKFVAGINNEWSRTQVQQWIKDDIVTVNGKAVKGNYKVRENDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A R E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIARDKKERQSMTVDE--NGKHAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|422758711|ref|ZP_16812473.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
gi|322411546|gb|EFY02454.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 297
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-----VSILQKEPDVLTVCK 156
+K G + V+ + YTV++ I L E V+ + + I+ ++ + + K
Sbjct: 31 IKQGLVLVNGQQKKAKYTVQAGDVIQFELPEEE--VLEYQAQVIPLDIIYEDEALAIINK 88
Query: 157 PPSVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKA 209
P + VHP + T+V L DL+ + VHR+D+ SGLL++A+
Sbjct: 89 PQGMVVHPSAGHPSGTMVNALMYHIKDLSSINGVVRPGIVHRIDKDTSGLLMVAKTDEAH 148
Query: 210 DLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGK 269
+++A K +++Y+A V+G P +++ I + + A + KGK
Sbjct: 149 QALAAELKAKKSLRKYLAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVTA--------KGK 200
Query: 270 AACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T+FT + G +S+V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 201 EAVTRFTVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|294617890|ref|ZP_06697499.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1679]
gi|291595835|gb|EFF27119.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1679]
Length = 303
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + V+ + V +Y VK +I+ + P DV +I+ ++ DV +
Sbjct: 35 LKNGAVSVNGQPVKANYKVKQGDEITVLI----PEPETLDVVPENIPLTIVYEDEDVAVI 90
Query: 155 CKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V ++ DL+ + VHR+D+ SGLL++A+N
Sbjct: 91 NKPQGMVVHPSAGHTHGTMVNALIYHIKDLSTINGVIRPGIVHRIDKDTSGLLMVAKNDQ 150
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+ QQ++ +++Y+A V+G P + + NA GRS + +
Sbjct: 151 AHESLAQQLKDKTSLRKYVALVHGEIPHEKGTI------NAPIGRS--KENRKMQAIRED 202
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T FT + ++V + TGRTHQIRVH++Y GYP+A D +Y
Sbjct: 203 GKPAVTHFTVLERFEGFTLVELKLETGRTHQIRVHMKYIGYPLAGDPVY 251
>gi|449890974|ref|ZP_21787660.1| putative pseudouridylate synthase [Streptococcus mutans SF12]
gi|449906014|ref|ZP_21793256.1| putative pseudouridylate synthase [Streptococcus mutans M230]
gi|449935949|ref|ZP_21803731.1| putative pseudouridylate synthase [Streptococcus mutans 2ST1]
gi|449959180|ref|ZP_21810058.1| putative pseudouridylate synthase [Streptococcus mutans 4VF1]
gi|449964867|ref|ZP_21811515.1| putative pseudouridylate synthase [Streptococcus mutans 15VF2]
gi|450010131|ref|ZP_21828505.1| putative pseudouridylate synthase [Streptococcus mutans A19]
gi|450025082|ref|ZP_21831547.1| putative pseudouridylate synthase [Streptococcus mutans U138]
gi|450077198|ref|ZP_21850269.1| putative pseudouridylate synthase [Streptococcus mutans N3209]
gi|450117153|ref|ZP_21864856.1| putative pseudouridylate synthase [Streptococcus mutans ST1]
gi|450120507|ref|ZP_21865754.1| putative pseudouridylate synthase [Streptococcus mutans ST6]
gi|450138727|ref|ZP_21872278.1| putative pseudouridylate synthase [Streptococcus mutans NLML1]
gi|450153063|ref|ZP_21876988.1| putative pseudouridylate synthase [Streptococcus mutans 21]
gi|450176849|ref|ZP_21886051.1| putative pseudouridylate synthase [Streptococcus mutans SM1]
gi|449166085|gb|EMB69044.1| putative pseudouridylate synthase [Streptococcus mutans 2ST1]
gi|449169415|gb|EMB72190.1| putative pseudouridylate synthase [Streptococcus mutans 4VF1]
gi|449171965|gb|EMB74607.1| putative pseudouridylate synthase [Streptococcus mutans 15VF2]
gi|449190361|gb|EMB91937.1| putative pseudouridylate synthase [Streptococcus mutans A19]
gi|449191272|gb|EMB92778.1| putative pseudouridylate synthase [Streptococcus mutans U138]
gi|449211388|gb|EMC11792.1| putative pseudouridylate synthase [Streptococcus mutans N3209]
gi|449226478|gb|EMC26007.1| putative pseudouridylate synthase [Streptococcus mutans ST1]
gi|449230175|gb|EMC29447.1| putative pseudouridylate synthase [Streptococcus mutans ST6]
gi|449233731|gb|EMC32789.1| putative pseudouridylate synthase [Streptococcus mutans NLML1]
gi|449239302|gb|EMC38027.1| putative pseudouridylate synthase [Streptococcus mutans 21]
gi|449244465|gb|EMC42839.1| putative pseudouridylate synthase [Streptococcus mutans SM1]
gi|449257001|gb|EMC54811.1| putative pseudouridylate synthase [Streptococcus mutans SF12]
gi|449257582|gb|EMC55227.1| putative pseudouridylate synthase [Streptococcus mutans M230]
Length = 296
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-------VSILQKEPDVLTV 154
+K G + V+ + Y VK +H P D + I+ ++ DV +
Sbjct: 31 IKAGLVWVNGKTQKAKYAVKEGD----IIHYERPQEEVLDCVAQNIPLEIVYEDEDVAVI 86
Query: 155 CKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V +L DL+ + VHR+D+ SGLL++A+N
Sbjct: 87 NKPQGMVVHPSVGHPSGTLVNALLFHIKDLSSINGVIRPGIVHRIDKDTSGLLMIAKNDQ 146
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
++++ K +++YIA V+G P V++ A GRS E K
Sbjct: 147 AHQALAKELKEKKSLRQYIALVHGNLPNDRGVIE------APIGRS--EKDRKKQTVTAK 198
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + G +S+V TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 199 GKPAVTHFKVLERFGQYSLVELTLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|336392300|ref|ZP_08573699.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
coryniformis subsp. torquens KCTC 3535]
gi|420146122|ref|ZP_14653559.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402202|gb|EJN55574.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 304
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 111/228 (48%), Gaps = 25/228 (10%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVS-------ILQKEPDVLTV 154
+K +QV+ ++ Y V + +I+ + P A DV I+ ++ DVL V
Sbjct: 37 IKTEHVQVNGQLEKAKYAVAAGDQITVSI----PAPAALDVQPQNIPLDIVYEDDDVLVV 92
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNASK 208
KP + VHP + ++T+V L L+ + VHR+D+ SGLL++A+N
Sbjct: 93 NKPQGMVVHPAPGHPQDTLVNALLYHSPLSTINGVIRPGIVHRIDKDTSGLLMVAKNDQA 152
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
Q++A + Y+A V+GV E + +D I A A + G G
Sbjct: 153 HISLAAQLQAKTSQREYLALVHGVIKEDKGTIDAPI---ARAKNDRKKQAVVAG-----G 204
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A T F + ++++ C TGRTHQIRVH++Y G+P+A D LY
Sbjct: 205 KHAVTHFEVLERFNEYTLIKCILETGRTHQIRVHMKYIGHPVAGDPLY 252
>gi|195978250|ref|YP_002123494.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
equi subsp. zooepidemicus MGCS10565]
gi|195974955|gb|ACG62481.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
equi subsp. zooepidemicus MGCS10565]
Length = 296
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 148 EPDVLTVC-KPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGL 199
+ DVL + KP + VHP + T+V +L DL+ + VHR+D+ SGL
Sbjct: 79 QDDVLVIINKPQGMVVHPSAGHSTGTLVNALLYHVKDLSSINGVIRPGIVHRIDKDTSGL 138
Query: 200 LILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGD 259
L++A+ L +++A K +++Y+A V+G P+ V++ A GRS +
Sbjct: 139 LMVAKTDKAHQLLADELKAKKSLRKYVAIVHGNLPKDRGVIE------APIGRSDKDRKK 192
Query: 260 SLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
KGK A T+F + G +S+V + TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 193 Q--TVTAKGKEALTRFKVLERFGRYSLVELQLETGRTHQIRVHMAYIGHPLAGDPLY 247
>gi|168205929|ref|ZP_02631934.1| pseudouridine synthase, RluA family [Clostridium perfringens E str.
JGS1987]
gi|170662629|gb|EDT15312.1| pseudouridine synthase, RluA family [Clostridium perfringens E str.
JGS1987]
Length = 298
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 129/284 (45%), Gaps = 20/284 (7%)
Query: 71 SHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFL 130
S + + + I + EE G SA RI+VD V ++Y VK+ ++I L
Sbjct: 6 SKITKEYDKRKIREFLKEEL-GLSSRLIRSAAIDKRIKVDGVAVKMNYVVKTGEEIKIEL 64
Query: 131 HRHEPPVM---AWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GIL----QAEHD 182
+ E + D+ I+ ++ D+L + K P + VHP + T+ GIL ++ D
Sbjct: 65 SKKESQNIEPEKMDIEIVYEDSDILVLNKKPFMVVHPTRSHPNGTLANGILYYFKESNQD 124
Query: 183 LAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDV 242
V RLD SGL+I+ +N + +++ K KRY+A V+G E E +
Sbjct: 125 CIVRL-VSRLDMNTSGLIIIGKNQYAHMVLSNEMKTDKFQKRYLAIVHGNLAEKEGTI-- 181
Query: 243 NINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVH 302
N R ++ + D +G+ + T + I + +V C TGRTHQIRVH
Sbjct: 182 ----NRPIYRPAEDTIKRVVDE--RGQESITHYKVIESYNGADLVECLLETGRTHQIRVH 235
Query: 303 LQYTGYPIANDMLYLC--EHVTHREGMSADRAAAYSHHSPPPVS 344
L G+PI D LY E R+ + A YS + P+S
Sbjct: 236 LSSLGHPIFGDSLYGTEDEEFISRQALHAYGLDFYSPKTKEPLS 279
>gi|87161600|ref|YP_493787.1| hypothetical protein SAUSA300_1090 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|161509370|ref|YP_001575029.1| pseudouridylate synthase RluD [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|294848190|ref|ZP_06788937.1| RNA pseudouridine synthase ylyB [Staphylococcus aureus A9754]
gi|415686384|ref|ZP_11450473.1| pseudouridylate synthase RluD [Staphylococcus aureus subsp. aureus
CGS01]
gi|418642840|ref|ZP_13205026.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-24]
gi|418649741|ref|ZP_13211769.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-91]
gi|418658941|ref|ZP_13220638.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-111]
gi|419775164|ref|ZP_14301106.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus CO-23]
gi|422742313|ref|ZP_16796319.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus MRSA177]
gi|87127574|gb|ABD22088.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|160368179|gb|ABX29150.1| pseudouridylate synthase RluD [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|294824990|gb|EFG41412.1| RNA pseudouridine synthase ylyB [Staphylococcus aureus A9754]
gi|315198434|gb|EFU28763.1| pseudouridylate synthase RluD [Staphylococcus aureus subsp. aureus
CGS01]
gi|320144297|gb|EFW36063.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus MRSA177]
gi|375015953|gb|EHS09597.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-24]
gi|375030114|gb|EHS23439.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-91]
gi|375037203|gb|EHS30255.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-111]
gi|383970848|gb|EID86938.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus CO-23]
Length = 305
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + ++++V +Y VK + I E V+ D+ I ++ DV V
Sbjct: 38 IKAGLVVANDKVVKSNYKVKLNDHIV----VTEKEVVEADILPENLNLDIYYEDDDVAVV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ +L+ + VHR+D SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTNTLVNGLMYQIKNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDI 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ V ++YIA V+G P +D I N + +S A D
Sbjct: 154 AHRGLVEQLMDKSVKRKYIALVHGNIPHDYGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +++V C+ TGRTHQIRVH++Y G+P+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|423604480|ref|ZP_17580373.1| RluA family pseudouridine synthase [Bacillus cereus VD102]
gi|401245100|gb|EJR51458.1| RluA family pseudouridine synthase [Bacillus cereus VD102]
Length = 302
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 120/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV--KCGRIQVDE-----------EMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + + R QV + + V +Y V+ + +I+ +
Sbjct: 10 AEEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAVKGNYKVRENDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A R E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIARDKKERQSMTVDE--NGKHAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|168212841|ref|ZP_02638466.1| pseudouridine synthase, RluA family [Clostridium perfringens CPE
str. F4969]
gi|422346787|ref|ZP_16427701.1| RluA family pseudouridine synthase [Clostridium perfringens
WAL-14572]
gi|170715523|gb|EDT27705.1| pseudouridine synthase, RluA family [Clostridium perfringens CPE
str. F4969]
gi|373226332|gb|EHP48659.1| RluA family pseudouridine synthase [Clostridium perfringens
WAL-14572]
Length = 298
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 129/284 (45%), Gaps = 20/284 (7%)
Query: 71 SHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFL 130
S + + + I + EE G SA RI+VD V ++Y VK+ ++I L
Sbjct: 6 SKITKEYDKRKIREFLKEEL-GLSSRLIRSAAIDKRIKVDGVAVKMNYVVKTGEEIKIEL 64
Query: 131 HRHEPPVM---AWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GIL----QAEHD 182
+ E + D+ I+ ++ D+L + K P + VHP + T+ GIL ++ D
Sbjct: 65 SKKESQNIEPEKMDIEIVYEDSDILVLNKKPFMVVHPTRSHPNGTLANGILYYFKESNQD 124
Query: 183 LAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDV 242
V RLD SGL+I+ +N + +++ K KRY+A V+G E E +
Sbjct: 125 CIVRL-VSRLDMNTSGLIIIGKNQYAHMVLSNEMKTDKFQKRYLAIVHGNLEEKEGTI-- 181
Query: 243 NINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVH 302
N R ++ + D +G+ + T + I + +V C TGRTHQIRVH
Sbjct: 182 ----NRPIYRPAEDTIKRVVDE--RGQESITHYKVIESYNGADLVECLLETGRTHQIRVH 235
Query: 303 LQYTGYPIANDMLYLC--EHVTHREGMSADRAAAYSHHSPPPVS 344
L G+PI D LY E R+ + A YS + P+S
Sbjct: 236 LSSLGHPIFGDSLYGTEDEEFISRQALHAYGLDFYSPKTKEPLS 279
>gi|24379309|ref|NP_721264.1| pseudouridylate synthase [Streptococcus mutans UA159]
gi|387786339|ref|YP_006251435.1| putative pseudouridylate synthase [Streptococcus mutans LJ23]
gi|449863215|ref|ZP_21778146.1| putative pseudouridylate synthase [Streptococcus mutans U2B]
gi|449871384|ref|ZP_21781070.1| putative pseudouridylate synthase [Streptococcus mutans 8ID3]
gi|449920362|ref|ZP_21798447.1| putative pseudouridylate synthase [Streptococcus mutans 1SM1]
gi|449985697|ref|ZP_21819818.1| putative pseudouridylate synthase [Streptococcus mutans NFSM2]
gi|449994363|ref|ZP_21822480.1| putative pseudouridylate synthase [Streptococcus mutans A9]
gi|450081774|ref|ZP_21851941.1| putative pseudouridylate synthase [Streptococcus mutans N66]
gi|450103917|ref|ZP_21859425.1| putative pseudouridylate synthase [Streptococcus mutans SF1]
gi|450145679|ref|ZP_21874700.1| putative pseudouridylate synthase [Streptococcus mutans 1ID3]
gi|450171887|ref|ZP_21884263.1| putative pseudouridylate synthase [Streptococcus mutans SM4]
gi|24377230|gb|AAN58570.1|AE014926_13 putative pseudouridylate synthase [Streptococcus mutans UA159]
gi|379132740|dbj|BAL69492.1| putative pseudouridylate synthase [Streptococcus mutans LJ23]
gi|449149057|gb|EMB52877.1| putative pseudouridylate synthase [Streptococcus mutans 1ID3]
gi|449155389|gb|EMB58903.1| putative pseudouridylate synthase [Streptococcus mutans 8ID3]
gi|449158803|gb|EMB62210.1| putative pseudouridylate synthase [Streptococcus mutans 1SM1]
gi|449178899|gb|EMB81137.1| putative pseudouridylate synthase [Streptococcus mutans NFSM2]
gi|449185356|gb|EMB87243.1| putative pseudouridylate synthase [Streptococcus mutans A9]
gi|449214991|gb|EMC15219.1| putative pseudouridylate synthase [Streptococcus mutans N66]
gi|449216710|gb|EMC16807.1| putative pseudouridylate synthase [Streptococcus mutans SF1]
gi|449243382|gb|EMC41820.1| putative pseudouridylate synthase [Streptococcus mutans SM4]
gi|449265198|gb|EMC62525.1| putative pseudouridylate synthase [Streptococcus mutans U2B]
Length = 296
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-------VSILQKEPDVLTV 154
+K G + V+ + Y VK +H P D + I+ ++ DV +
Sbjct: 31 IKAGLVLVNGKTQKAKYAVKEGD----IIHYERPQEEVLDCVAQNIPLEIVYEDEDVAVI 86
Query: 155 CKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V +L DL+ + VHR+D+ SGLL++A+N
Sbjct: 87 NKPQGMVVHPSVGHPSGTLVNALLFHIKDLSSINGVIRPGIVHRIDKDTSGLLMIAKNDQ 146
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
++++ K +++YIA V+G P V++ A GRS E K
Sbjct: 147 AHQALAKELKEKKSLRQYIALVHGNLPNDRGVIE------APIGRS--EKDRKKQTVTAK 198
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + G +S+V TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 199 GKPAVTHFKVLERFGQYSLVELTLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|309778048|ref|ZP_07672988.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 3_1_53]
gi|308914185|gb|EFP59985.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 3_1_53]
Length = 304
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 121/250 (48%), Gaps = 26/250 (10%)
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISH-FLHRHE----PPVMAWDVSILQKEPDVLTV 154
S ++ G I V+E+ +Y VK+ I+ F E P M DV ++ DV+ +
Sbjct: 34 SLLQEGLILVNEKPAKANYKVKAQDHITACFDDEMELEARPEAMELDVRY--EDEDVIVI 91
Query: 155 CKPPSVPVHPCGQYRKNTVV-GILQAEHDLA----PLFP--VHRLDRLVSGLLILARNAS 207
KP ++ VHP + T+V G+L DL+ L P +HR+D+ +GLLI+A+N
Sbjct: 92 NKPKNIVVHPAAGNQTGTLVNGLLYHCKDLSGINGTLRPGIIHRIDKDTTGLLIVAKNDL 151
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+++ V + Y A V+GV +D A GR + + T
Sbjct: 152 AHASLSKQLQSKTVNRLYYALVHGVIQHDFGTID------APIGRDVKDR-QKMAVTSTN 204
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGM 327
K A T F I +++V C TGRTHQIRVH+QY G+P+ D Y ++R+ M
Sbjct: 205 SKDARTHFQVIERFENYTLVECRLETGRTHQIRVHMQYIGHPVVGDEKY-----SYRKTM 259
Query: 328 SADRAAAYSH 337
+ ++H
Sbjct: 260 QTNGQLLHAH 269
>gi|251778694|ref|ZP_04821614.1| pseudouridine synthase, RluA family [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243083009|gb|EES48899.1| pseudouridine synthase, RluA family [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 298
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 124/255 (48%), Gaps = 17/255 (6%)
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVM---AWDVSILQKEPDVLTVCK 156
SA K RI V+ V ++Y +K+ I L+++E + D+ I+ ++ DVL + K
Sbjct: 34 SASKDQRIYVNNSAVRMNYMIKNGDVIKIDLNKNESQNINPEKIDLDIVYEDDDVLVINK 93
Query: 157 PPSVPVHPCGQYRKNTVV-GIL---QAEHDLAPLFPVHRLDRLVSGLLILARNASKADLF 212
P + VHP ++ T+ GIL Q + + V RLD SGL+I+A+N
Sbjct: 94 QPFIIVHPTKNFQSGTLANGILYYFQETNQNCIVRLVSRLDMNTSGLIIIAKNQFSHSRL 153
Query: 213 RQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAAC 272
+ ++ K+ KRY+A V+G E E +D+ I + D +G+ +
Sbjct: 154 SKDMKE-KLQKRYLAIVHGNLEEKEGTIDLPIYKPEGIEYGSRRVIDE------RGQRSI 206
Query: 273 TKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY---LCEHVTHREGMSA 329
T + I + +V C TGRTHQIRVHL + G+PI D LY L E++ R+ + A
Sbjct: 207 THYKVIESFEGGDLVECLLETGRTHQIRVHLSHLGHPIYGDELYGVGLEENLIKRQALHA 266
Query: 330 DRAAAYSHHSPPPVS 344
S S P+S
Sbjct: 267 YGLDFESPRSLKPLS 281
>gi|42782985|ref|NP_980232.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
ATCC 10987]
gi|49186742|ref|YP_029994.1| RNA pseudouridylate synthase [Bacillus anthracis str. Sterne]
gi|118479113|ref|YP_896264.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis str. Al Hakam]
gi|165872288|ref|ZP_02216925.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0488]
gi|167636442|ref|ZP_02394741.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0442]
gi|167641146|ref|ZP_02399401.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0193]
gi|170688858|ref|ZP_02880061.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0465]
gi|170708814|ref|ZP_02899250.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0389]
gi|177654900|ref|ZP_02936617.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0174]
gi|190565878|ref|ZP_03018797.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Tsiankovskii-I]
gi|196035788|ref|ZP_03103190.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus W]
gi|196045901|ref|ZP_03113130.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB108]
gi|218905022|ref|YP_002452856.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH820]
gi|225865874|ref|YP_002751252.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB102]
gi|228916530|ref|ZP_04080096.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228928941|ref|ZP_04091973.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228935208|ref|ZP_04098034.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228947612|ref|ZP_04109902.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|229092938|ref|ZP_04224071.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-42]
gi|229123406|ref|ZP_04252610.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
95/8201]
gi|229186133|ref|ZP_04313302.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BGSC 6E1]
gi|254683398|ref|ZP_05147258.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. CNEVA-9066]
gi|254735932|ref|ZP_05193638.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Western North America USA6153]
gi|254739820|ref|ZP_05197513.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Kruger B]
gi|254751010|ref|ZP_05203049.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Vollum]
gi|301055383|ref|YP_003793594.1| ribosomal large subunit pseudouridylate synthase D [Bacillus cereus
biovar anthracis str. CI]
gi|376267789|ref|YP_005120501.1| Ribosomal large subunit pseudouridine synthase D [Bacillus cereus
F837/76]
gi|384181707|ref|YP_005567469.1| 23S rRNA pseudouridine synthase D [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|386737715|ref|YP_006210896.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. H9401]
gi|421507433|ref|ZP_15954353.1| ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. UR-1]
gi|421639648|ref|ZP_16080239.1| ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. BF1]
gi|423550359|ref|ZP_17526686.1| RluA family pseudouridine synthase [Bacillus cereus ISP3191]
gi|42738912|gb|AAS42840.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Bacillus cereus ATCC 10987]
gi|49180669|gb|AAT56045.1| RNA pseudouridylate synthase [Bacillus anthracis str. Sterne]
gi|118418338|gb|ABK86757.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis str. Al Hakam]
gi|164711964|gb|EDR17504.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0488]
gi|167510926|gb|EDR86317.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0193]
gi|167528184|gb|EDR90971.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0442]
gi|170126299|gb|EDS95190.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0389]
gi|170667213|gb|EDT17973.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0465]
gi|172080411|gb|EDT65498.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0174]
gi|190562797|gb|EDV16763.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Tsiankovskii-I]
gi|195991437|gb|EDX55403.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus W]
gi|196023341|gb|EDX62019.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB108]
gi|218538740|gb|ACK91138.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH820]
gi|225786554|gb|ACO26771.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB102]
gi|228597309|gb|EEK54960.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BGSC 6E1]
gi|228660182|gb|EEL15818.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
95/8201]
gi|228690442|gb|EEL44226.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-42]
gi|228812132|gb|EEM58463.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228824373|gb|EEM70179.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228830748|gb|EEM76353.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228843109|gb|EEM88191.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|300377552|gb|ADK06456.1| ribosomal large subunit pseudouridylate synthase D [Bacillus cereus
biovar anthracis str. CI]
gi|324327791|gb|ADY23051.1| 23S rRNA pseudouridine synthase D [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|364513589|gb|AEW56988.1| Ribosomal large subunit pseudouridine synthase D [Bacillus cereus
F837/76]
gi|384387567|gb|AFH85228.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. H9401]
gi|401189975|gb|EJQ97025.1| RluA family pseudouridine synthase [Bacillus cereus ISP3191]
gi|401822567|gb|EJT21717.1| ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. UR-1]
gi|403393313|gb|EJY90558.1| ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. BF1]
Length = 302
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 120/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV--KCGRIQVDE-----------EMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + + R QV + + V +Y V+ + +I+ +
Sbjct: 10 AEEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAVKGNYKVRENDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A R E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIARDKKERQSMTVDE--NGKHAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|417655623|ref|ZP_12305333.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21193]
gi|329728841|gb|EGG65262.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21193]
Length = 305
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + ++++V +Y VK + I E V+ D+ I ++ DV V
Sbjct: 38 IKAGLVVANDKVVKSNYKVKLNDHIV----VTEKEVVEADILPENLNLDIYYEDDDVAVV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ +L+ + VHR+D SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTNTLVNGLMYQIKNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDI 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ V ++YIA V+G P +D I N + +S A D
Sbjct: 154 AHRGLVEQLMDKSVKRKYIALVHGNIPHDYGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +++V C+ TGRTHQIRVH++Y G+P+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKNYTLVECQLETGRTHQIRVHMRYIGFPLVGDPKY 254
>gi|229146464|ref|ZP_04274835.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST24]
gi|228637097|gb|EEK93556.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST24]
Length = 302
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 109/225 (48%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA---WDVSILQKEPDVLTVCKPP 158
+K + V+ + V +Y VK +I+ + E + ++ I ++ DVL V KP
Sbjct: 38 IKDNVVTVNGKAVKGNYKVKEEDEITVTIPEPEELDIQPEDLNLEIYYEDADVLVVNKPR 97
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V G++ DL+ + VHR+D+ SGLL++A+N +
Sbjct: 98 GMVVHPAPGHTSGTLVNGLMHHCTDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDMAHES 157
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q+ A V +RY A V+GV P + +D A R E D GK A
Sbjct: 158 LVNQLVAKTVTRRYKAIVHGVIPHDKGTID------APIARDKKERQSMTVDE--NGKNA 209
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + ++V C TGRTHQIRVH++Y GYP+A D Y
Sbjct: 210 VTHFQVLERFKDFTLVECRLETGRTHQIRVHMKYIGYPLAGDPKY 254
>gi|30021981|ref|NP_833612.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
ATCC 14579]
gi|229129170|ref|ZP_04258143.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-Cer4]
gi|296504387|ref|YP_003666087.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis BMB171]
gi|423585698|ref|ZP_17561785.1| RluA family pseudouridine synthase [Bacillus cereus VD045]
gi|423649754|ref|ZP_17625324.1| RluA family pseudouridine synthase [Bacillus cereus VD169]
gi|29897537|gb|AAP10813.1| Ribosomal large subunit pseudouridine synthase D [Bacillus cereus
ATCC 14579]
gi|228654407|gb|EEL10272.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-Cer4]
gi|296325439|gb|ADH08367.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis BMB171]
gi|401233044|gb|EJR39540.1| RluA family pseudouridine synthase [Bacillus cereus VD045]
gi|401283034|gb|EJR88931.1| RluA family pseudouridine synthase [Bacillus cereus VD169]
Length = 302
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 109/225 (48%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA---WDVSILQKEPDVLTVCKPP 158
+K + V+ + V +Y VK +I+ + E + ++ I ++ DVL V KP
Sbjct: 38 IKDNVVTVNGKAVKGNYKVKEEDEITVTIPEPEELDIQPEDLNLEIYYEDADVLVVNKPR 97
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V G++ DL+ + VHR+D+ SGLL++A+N +
Sbjct: 98 GMVVHPAPGHTSGTLVNGLMHHCTDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDMAHES 157
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q+ A V +RY A V+GV P + +D A R E D GK A
Sbjct: 158 LVNQLVAKTVTRRYKAIVHGVIPHDKGTID------APIARDKKERQSMTVDE--NGKNA 209
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + ++V C TGRTHQIRVH++Y GYP+A D Y
Sbjct: 210 VTHFQVLERFKDFTLVECRLETGRTHQIRVHMKYIGYPLAGDPKY 254
>gi|422354561|ref|ZP_16435296.1| pseudouridine synthase, RluA family [Escherichia coli MS 117-3]
gi|324017411|gb|EGB86630.1| pseudouridine synthase, RluA family [Escherichia coli MS 117-3]
Length = 319
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 113/250 (45%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ + Y V+ +++
Sbjct: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAERE 77
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 137
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + + V V +
Sbjct: 138 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQVPLLK 197
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 198 N------ILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 252 GHPIAFDDRY 261
>gi|377577587|ref|ZP_09806569.1| 23S rRNA pseudouridine synthase RluC [Escherichia hermannii NBRC
105704]
gi|377541325|dbj|GAB51734.1| 23S rRNA pseudouridine synthase RluC [Escherichia hermannii NBRC
105704]
Length = 325
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 115/250 (46%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ + Y V+ +++
Sbjct: 26 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAERE 85
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A +IL ++ +L + KP VH + G+ + L
Sbjct: 86 EQAVSPHLQKVSALTDAILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 145
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ ++ K Y+A V G + +VV +
Sbjct: 146 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLRGKEMQKDYLALVRGQWQSHVKVVQAPLLK 205
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH Q+
Sbjct: 206 N------ILQSGERIVRVNSEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQHA 259
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 260 GHPIAFDDRY 269
>gi|15924187|ref|NP_371721.1| ribosomal large subunit psudouridine synthase D [Staphylococcus
aureus subsp. aureus Mu50]
gi|15926780|ref|NP_374313.1| hypothetical protein SA1040 [Staphylococcus aureus subsp. aureus
N315]
gi|57651766|ref|YP_186072.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus COL]
gi|88194903|ref|YP_499703.1| hypothetical protein SAOUHSC_01163 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148267688|ref|YP_001246631.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus JH9]
gi|150393746|ref|YP_001316421.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus JH1]
gi|151221320|ref|YP_001332142.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus str.
Newman]
gi|156979518|ref|YP_001441777.1| hypothetical protein SAHV_1187 [Staphylococcus aureus subsp. aureus
Mu3]
gi|221141987|ref|ZP_03566480.1| hypothetical protein SauraJ_10200 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253315555|ref|ZP_04838768.1| hypothetical protein SauraC_05302 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253731814|ref|ZP_04865979.1| pseudouridylate synthase RluD [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733565|ref|ZP_04867730.1| pseudouridylate synthase RluD [Staphylococcus aureus subsp. aureus
TCH130]
gi|255005984|ref|ZP_05144585.2| hypothetical protein SauraM_05925 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257795747|ref|ZP_05644726.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9781]
gi|258415971|ref|ZP_05682241.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9763]
gi|258419718|ref|ZP_05682685.1| pseudouridylate synthase [Staphylococcus aureus A9719]
gi|258438760|ref|ZP_05689913.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9299]
gi|258444534|ref|ZP_05692863.1| ribosomal large subunit psudouridine synthase D [Staphylococcus
aureus A8115]
gi|258447633|ref|ZP_05695777.1| ribosomal large subunit psudouridine synthase D [Staphylococcus
aureus A6300]
gi|258449475|ref|ZP_05697578.1| pseudouridine synthase [Staphylococcus aureus A6224]
gi|258452494|ref|ZP_05700500.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A5948]
gi|258454854|ref|ZP_05702818.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A5937]
gi|262048100|ref|ZP_06020987.1| hypothetical protein SAD30_1876 [Staphylococcus aureus D30]
gi|262051832|ref|ZP_06024048.1| hypothetical protein SA930_1382 [Staphylococcus aureus 930918-3]
gi|269202811|ref|YP_003282080.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus ED98]
gi|282892683|ref|ZP_06300918.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A8117]
gi|282919979|ref|ZP_06327708.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9765]
gi|282927537|ref|ZP_06335153.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A10102]
gi|284024121|ref|ZP_06378519.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus 132]
gi|295407135|ref|ZP_06816936.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A8819]
gi|296275218|ref|ZP_06857725.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus MR1]
gi|297245979|ref|ZP_06929838.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A8796]
gi|304381241|ref|ZP_07363894.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|379014388|ref|YP_005290624.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VC40]
gi|384861790|ref|YP_005744510.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|384864423|ref|YP_005749782.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|384869730|ref|YP_005752444.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus T0131]
gi|387142806|ref|YP_005731199.1| putative RNA pseudouridylate synthase [Staphylococcus aureus subsp.
aureus TW20]
gi|387150340|ref|YP_005741904.1| Ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus 04-02981]
gi|415691044|ref|ZP_11453283.1| hypothetical protein CGSSa03_05574 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417650084|ref|ZP_12299861.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21189]
gi|417650989|ref|ZP_12300752.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21172]
gi|417800970|ref|ZP_12448072.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21318]
gi|417892210|ref|ZP_12536264.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21201]
gi|417899951|ref|ZP_12543850.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21259]
gi|418280900|ref|ZP_12893722.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21178]
gi|418286365|ref|ZP_12899011.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21209]
gi|418317736|ref|ZP_12929152.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21232]
gi|418424337|ref|ZP_12997459.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS1]
gi|418430173|ref|ZP_13003089.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS3a]
gi|418433134|ref|ZP_13005914.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS4]
gi|418436809|ref|ZP_13008611.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS5]
gi|418439680|ref|ZP_13011388.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS6]
gi|418442733|ref|ZP_13014335.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS7]
gi|418445792|ref|ZP_13017268.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS8]
gi|418448736|ref|ZP_13020128.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS9]
gi|418451560|ref|ZP_13022894.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS10]
gi|418454616|ref|ZP_13025878.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS11a]
gi|418457492|ref|ZP_13028695.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS11b]
gi|418569085|ref|ZP_13133425.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21272]
gi|418570852|ref|ZP_13135113.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21283]
gi|418579027|ref|ZP_13143122.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418637910|ref|ZP_13200213.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-3]
gi|418654641|ref|ZP_13216537.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-99]
gi|418663114|ref|ZP_13224639.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-122]
gi|418873495|ref|ZP_13427790.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-125]
gi|418878046|ref|ZP_13432281.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418880874|ref|ZP_13435093.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418883803|ref|ZP_13437998.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418886457|ref|ZP_13440605.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418894895|ref|ZP_13448990.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418903405|ref|ZP_13457446.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1770]
gi|418906131|ref|ZP_13460158.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418911802|ref|ZP_13465785.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG547]
gi|418914294|ref|ZP_13468266.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|418920274|ref|ZP_13474207.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIGC348]
gi|418925429|ref|ZP_13479331.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418928453|ref|ZP_13482339.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418931266|ref|ZP_13485107.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418946955|ref|ZP_13499354.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-157]
gi|418955458|ref|ZP_13507398.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-189]
gi|418991058|ref|ZP_13538719.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1096]
gi|419784890|ref|ZP_14310649.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-M]
gi|422745573|ref|ZP_16799512.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus MRSA131]
gi|424768700|ref|ZP_18195960.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus CM05]
gi|424785026|ref|ZP_18211829.1| Ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus CN79]
gi|440707203|ref|ZP_20887903.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21282]
gi|440734642|ref|ZP_20914254.1| hypothetical protein SASA_06520 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443636912|ref|ZP_21121005.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21236]
gi|13700996|dbj|BAB42292.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14246967|dbj|BAB57359.1| similar to ribosomal large subunit psudouridine synthase D
[Staphylococcus aureus subsp. aureus Mu50]
gi|57285952|gb|AAW38046.1| ribosomal large subunit pseudouridine synthases, RluD subfamily
[Staphylococcus aureus subsp. aureus COL]
gi|87202461|gb|ABD30271.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740757|gb|ABQ49055.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus JH9]
gi|149946198|gb|ABR52134.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus JH1]
gi|150374120|dbj|BAF67380.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus str.
Newman]
gi|156721653|dbj|BAF78070.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|253724413|gb|EES93142.1| pseudouridylate synthase RluD [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728619|gb|EES97348.1| pseudouridylate synthase RluD [Staphylococcus aureus subsp. aureus
TCH130]
gi|257789719|gb|EEV28059.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9781]
gi|257839307|gb|EEV63781.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9763]
gi|257844303|gb|EEV68685.1| pseudouridylate synthase [Staphylococcus aureus A9719]
gi|257848019|gb|EEV72012.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9299]
gi|257850027|gb|EEV73980.1| ribosomal large subunit psudouridine synthase D [Staphylococcus
aureus A8115]
gi|257853824|gb|EEV76783.1| ribosomal large subunit psudouridine synthase D [Staphylococcus
aureus A6300]
gi|257857463|gb|EEV80361.1| pseudouridine synthase [Staphylococcus aureus A6224]
gi|257859712|gb|EEV82554.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A5948]
gi|257863237|gb|EEV86001.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A5937]
gi|259160233|gb|EEW45261.1| hypothetical protein SA930_1382 [Staphylococcus aureus 930918-3]
gi|259163666|gb|EEW48221.1| hypothetical protein SAD30_1876 [Staphylococcus aureus D30]
gi|262075101|gb|ACY11074.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus ED98]
gi|269940689|emb|CBI49070.1| putative RNA pseudouridylate synthase [Staphylococcus aureus subsp.
aureus TW20]
gi|282590540|gb|EFB95617.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A10102]
gi|282594695|gb|EFB99679.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9765]
gi|282764680|gb|EFC04805.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A8117]
gi|285816879|gb|ADC37366.1| Ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus 04-02981]
gi|294967988|gb|EFG44016.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A8819]
gi|297177143|gb|EFH36397.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A8796]
gi|302751019|gb|ADL65196.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304340224|gb|EFM06165.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|312829590|emb|CBX34432.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315130988|gb|EFT86972.1| hypothetical protein CGSSa03_05574 [Staphylococcus aureus subsp.
aureus CGS03]
gi|320140988|gb|EFW32835.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus MRSA131]
gi|329313865|gb|AEB88278.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus T0131]
gi|329724740|gb|EGG61245.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21189]
gi|329727173|gb|EGG63629.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21172]
gi|334277464|gb|EGL95694.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21318]
gi|341843559|gb|EGS84782.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21259]
gi|341858177|gb|EGS98978.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21201]
gi|365167001|gb|EHM58478.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21178]
gi|365167073|gb|EHM58549.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21209]
gi|365245004|gb|EHM85656.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21232]
gi|371978270|gb|EHO95520.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21272]
gi|371983032|gb|EHP00180.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21283]
gi|374363085|gb|AEZ37190.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VC40]
gi|375014466|gb|EHS08147.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-99]
gi|375023134|gb|EHS16597.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-3]
gi|375034747|gb|EHS27897.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-122]
gi|375366032|gb|EHS70044.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-125]
gi|375370941|gb|EHS74733.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-189]
gi|375377152|gb|EHS80642.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-157]
gi|377694168|gb|EHT18533.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377694701|gb|EHT19065.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377697054|gb|EHT21409.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377714548|gb|EHT38747.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377714890|gb|EHT39088.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377723180|gb|EHT47305.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1096]
gi|377725180|gb|EHT49295.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG547]
gi|377725410|gb|EHT49523.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377731767|gb|EHT55820.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377738365|gb|EHT62374.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377742420|gb|EHT66405.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG1770]
gi|377744498|gb|EHT68475.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377757796|gb|EHT81684.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377765431|gb|EHT89281.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|377765633|gb|EHT89482.1| pseudouridine synthase, RluA family protein [Staphylococcus aureus
subsp. aureus CIGC348]
gi|383363648|gb|EID40979.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-M]
gi|387718568|gb|EIK06526.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS3a]
gi|387720244|gb|EIK08156.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS1]
gi|387725800|gb|EIK13398.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS4]
gi|387727913|gb|EIK15413.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS5]
gi|387730783|gb|EIK18141.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS6]
gi|387735720|gb|EIK22830.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS8]
gi|387737398|gb|EIK24464.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS7]
gi|387737952|gb|EIK25006.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS9]
gi|387744441|gb|EIK31205.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS10]
gi|387745731|gb|EIK32481.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS11a]
gi|387747224|gb|EIK33933.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS11b]
gi|402348470|gb|EJU83457.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus CM05]
gi|408423399|emb|CCJ10810.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus ST228]
gi|408425389|emb|CCJ12776.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus ST228]
gi|408427377|emb|CCJ14740.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus ST228]
gi|408429364|emb|CCJ26529.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus ST228]
gi|408431352|emb|CCJ18667.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus ST228]
gi|408433346|emb|CCJ20631.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus ST228]
gi|408435337|emb|CCJ22597.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus ST228]
gi|408437322|emb|CCJ24565.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus ST228]
gi|421956436|gb|EKU08765.1| Ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus CN79]
gi|436431670|gb|ELP29023.1| hypothetical protein SASA_06520 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436506242|gb|ELP42075.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21282]
gi|443406889|gb|ELS65459.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21236]
Length = 305
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + ++++V +Y VK + I E V+ D+ I ++ DV V
Sbjct: 38 IKAGLVVANDKVVKSNYKVKLNDHIV----VTEKEVVEADILPENLNLDIYYEDDDVAVV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ +L+ + VHR+D SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTNTLVNGLMYQIKNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDI 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ V ++YIA V+G P +D I N + +S A D
Sbjct: 154 AHRGLVEQLMDKSVKRKYIALVHGNIPHDYGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +++V C+ TGRTHQIRVH++Y G+P+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|297208159|ref|ZP_06924590.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|379020904|ref|YP_005297566.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus M013]
gi|384549952|ref|YP_005739204.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Staphylococcus aureus subsp. aureus JKD6159]
gi|386728875|ref|YP_006195258.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus 71193]
gi|386830732|ref|YP_006237386.1| putative RNA pseudouridylate synthase [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|387602469|ref|YP_005733990.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus ST398]
gi|404478535|ref|YP_006709965.1| RNA pseudouridylate synthase [Staphylococcus aureus 08BA02176]
gi|416839240|ref|ZP_11902634.1| putative RNA pseudouridylate synthase [Staphylococcus aureus O11]
gi|416847404|ref|ZP_11907126.1| putative RNA pseudouridylate synthase [Staphylococcus aureus O46]
gi|417797980|ref|ZP_12445166.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21310]
gi|417896137|ref|ZP_12540104.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21235]
gi|418309824|ref|ZP_12921375.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21331]
gi|418316091|ref|ZP_12927535.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21340]
gi|418561383|ref|ZP_13125874.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21262]
gi|418598359|ref|ZP_13161869.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21343]
gi|418645805|ref|ZP_13207923.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-55]
gi|418655124|ref|ZP_13217001.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-105]
gi|418978562|ref|ZP_13526362.1| Ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus DR10]
gi|421150081|ref|ZP_15609737.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443639544|ref|ZP_21123550.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21196]
gi|448744015|ref|ZP_21725919.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus KT/Y21]
gi|283470407|emb|CAQ49618.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus ST398]
gi|296887402|gb|EFH26304.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|302332801|gb|ADL22994.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Staphylococcus aureus subsp. aureus JKD6159]
gi|323440971|gb|EGA98678.1| putative RNA pseudouridylate synthase [Staphylococcus aureus O11]
gi|323442288|gb|EGA99918.1| putative RNA pseudouridylate synthase [Staphylococcus aureus O46]
gi|334277102|gb|EGL95341.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21310]
gi|341841038|gb|EGS82510.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21235]
gi|359830213|gb|AEV78191.1| Ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus M013]
gi|365237947|gb|EHM78786.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21331]
gi|365241762|gb|EHM82497.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21340]
gi|371977594|gb|EHO94858.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21262]
gi|374399716|gb|EHQ70852.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21343]
gi|375022338|gb|EHS15821.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-55]
gi|375037973|gb|EHS30973.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-105]
gi|379993386|gb|EIA14832.1| Ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus DR10]
gi|384230168|gb|AFH69415.1| Ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus 71193]
gi|385196124|emb|CCG15745.1| putative RNA pseudouridylate synthase [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|394329471|gb|EJE55573.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|404440024|gb|AFR73217.1| putative RNA pseudouridylate synthase [Staphylococcus aureus
08BA02176]
gi|443406751|gb|ELS65322.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21196]
gi|445562611|gb|ELY18778.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus KT/Y21]
Length = 305
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + ++++V +Y VK + I E V+ D+ I ++ DV V
Sbjct: 38 IKAGLVVANDKVVKSNYKVKLNDHIV----VTEKEVVEADILPENLNLDIYYEDDDVAVV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ +L+ + VHR+D SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTNTLVNGLMYQIKNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDI 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ V ++YIA V+G P +D I N + +S A D
Sbjct: 154 AHRGLVEQLMDKSVKRKYIALVHGNIPHDYGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +++V C+ TGRTHQIRVH++Y G+P+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|253579056|ref|ZP_04856327.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849999|gb|EES77958.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 299
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 18/183 (9%)
Query: 141 DVSILQKEPDVLTVCKPPSVPVHP-CGQYRKNTVVGILQAEHDLAPLFP---VHRLDRLV 196
D++I+ ++ D+L + KP +PVHP G Y GI + F ++RLDR
Sbjct: 80 DLNIIYEDEDILVINKPADMPVHPSAGNYENTLANGIAWYFAEKGEDFVYRCINRLDRDT 139
Query: 197 SGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGR---S 253
+G LILA+N A + Q++ ++++ Y+A V+G+ P+ + NA R S
Sbjct: 140 TGALILAKNPLSAAILSVQMKKRQILRTYLALVDGLLPDSGTI-------NAPIARMEGS 192
Query: 254 TAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAND 313
+ G G++A T + R++ +S+ TGRTHQIRVH++Y G+P+ D
Sbjct: 193 VITREVNFG----TGESAITHYERLAAGKEYSLAELHLETGRTHQIRVHMKYIGHPLPGD 248
Query: 314 MLY 316
LY
Sbjct: 249 YLY 251
>gi|417090374|ref|ZP_11955908.1| pseudouridine synthase, RluA family [Streptococcus suis R61]
gi|353533670|gb|EHC03319.1| pseudouridine synthase, RluA family [Streptococcus suis R61]
Length = 297
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFL-HRHEPPVMAWDV--SILQKEPDVLTVCKPP 158
+K G++ V+ + Y+VK+ +++ + E +A D+ I+ ++ DV V KP
Sbjct: 31 IKAGQVLVNGQPKKAKYSVKAGDILTYQVPEVEEIDYVAEDIPLEIVFQDEDVAVVNKPQ 90
Query: 159 SVPVHPCGQYRKNTVV-GILQAEHDLAP----LFP--VHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V +L DL+ L P VHR+D+ SGLL++A+N
Sbjct: 91 GMVVHPSAGHTSGTLVNALLYHVKDLSGINGILRPGIVHRIDKDTSGLLMIAKNDDAHTK 150
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
+++ K +++Y A V+G P V++ I + + A + KGK A
Sbjct: 151 LAAELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTA--------KGKEA 202
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T+F + G +++V TGRTHQIRVH+ Y G+P+A D Y
Sbjct: 203 VTRFQVLERFGDYTLVELTLETGRTHQIRVHMAYIGHPVAGDEAY 247
>gi|229198004|ref|ZP_04324718.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
m1293]
gi|423574501|ref|ZP_17550620.1| RluA family pseudouridine synthase [Bacillus cereus MSX-D12]
gi|228585483|gb|EEK43587.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
m1293]
gi|401212026|gb|EJR18772.1| RluA family pseudouridine synthase [Bacillus cereus MSX-D12]
Length = 302
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 120/255 (47%), Gaps = 35/255 (13%)
Query: 87 AEEFKGRPYDYYVSAV--KCGRIQVDE-----------EMVPVSYTVKSSQKISHFLHRH 133
AEE K D +V+ + + R QV + + V +Y V+ + +I+ +
Sbjct: 10 AEEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAVKGNYKVRENDEITVTIPEP 69
Query: 134 E-----PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL- 186
E P M ++ I ++ DVL V KP + VHP + T+V G++ DL+ +
Sbjct: 70 EELDIQPEDM--NLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCTDLSGIN 127
Query: 187 -----FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHR+D+ SGLL++A+N + Q+ A V +RY A V+GV P + +D
Sbjct: 128 GVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTID 187
Query: 242 VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRV 301
A R E D GK A T F + ++V C TGRTHQIRV
Sbjct: 188 ------APIARDKKERQSMTVDE--NGKHAVTHFQVLERFKDFTLVECRLETGRTHQIRV 239
Query: 302 HLQYTGYPIANDMLY 316
H++Y GYP+A D Y
Sbjct: 240 HMKYIGYPLAGDPKY 254
>gi|450050032|ref|ZP_21840036.1| putative pseudouridylate synthase [Streptococcus mutans NFSM1]
gi|450183124|ref|ZP_21888553.1| putative pseudouridylate synthase [Streptococcus mutans 24]
gi|449203059|gb|EMC03937.1| putative pseudouridylate synthase [Streptococcus mutans NFSM1]
gi|449243734|gb|EMC42142.1| putative pseudouridylate synthase [Streptococcus mutans 24]
Length = 296
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD-------VSILQKEPDVLTV 154
+K G + V+ + Y VK +H P D + I+ ++ DV +
Sbjct: 31 IKAGLVWVNGKTQKAKYAVKEGD----IIHYERPQEEVLDCVAQNIPLEIVYEDEDVAVI 86
Query: 155 CKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP + T+V +L DL+ + VHR+D+ SGLL++A+N
Sbjct: 87 NKPQGMVVHPSVGHPSGTLVNALLFHIKDLSSINGVIRPGIVHRIDKDTSGLLMIAKNDQ 146
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
++++ K +++YIA V+G P V++ A GRS E K
Sbjct: 147 AHQALAKELKEKKSLRQYIALVHGNLPNDRGVIE------APIGRS--EKDRKKQTVTAK 198
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + G +S+V TGRTHQIRVH+ Y G+P+A D LY
Sbjct: 199 GKPAVTHFKVLERFGQYSLVELTLETGRTHQIRVHMAYIGHPVAGDPLY 247
>gi|417901302|ref|ZP_12545178.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21266]
gi|341845141|gb|EGS86343.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21266]
Length = 305
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDV-------SILQKEPDVLTV 154
+K G + ++++V +Y VK + I E V+ D+ I ++ DV V
Sbjct: 38 IKAGLVVANDKVVKSNYKVKLNDHIV----VTEKEVVEADILPENLNLDIYYEDDDVAVV 93
Query: 155 CKPPSVPVHPC-GQYRKNTVVGILQAEHDLAPL------FPVHRLDRLVSGLLILARNAS 207
KP + VHP G Y V G++ +L+ + VHR+D SGLL++A+N
Sbjct: 94 YKPKGMVVHPSPGHYTNTLVNGLMYKIKNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDI 153
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLK 267
+Q+ V ++YIA V+G P +D I N + +S A D
Sbjct: 154 AHRGLVEQLMDKSVKRKYIALVHGNIPHDYGTIDAPIGRNKNDRQSMAVVDD-------- 205
Query: 268 GKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
GK A T F + +++V C+ TGRTHQIRVH++Y G+P+ D Y
Sbjct: 206 GKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVHMKYIGFPLVGDPKY 254
>gi|393201806|ref|YP_006463648.1| pseudouridylate synthase, 23S RNA-specific [Solibacillus silvestris
StLB046]
gi|406664680|ref|ZP_11072455.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
isronensis B3W22]
gi|327441137|dbj|BAK17502.1| pseudouridylate synthase, 23S RNA-specific [Solibacillus silvestris
StLB046]
gi|405387528|gb|EKB46952.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
isronensis B3W22]
Length = 300
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 121/259 (46%), Gaps = 31/259 (11%)
Query: 81 TIVDLFAEEFKGRPYDYYVSAVK--CGRIQV----DEEMVPVS-YTVKSSQKISH--FLH 131
T+V L EEF G D +S ++ R Q+ DEE + V+ VK+ K+ +
Sbjct: 2 TVVTLTIEEFAGERIDKALSQMEESWSRSQISNWLDEERILVNGAAVKAKYKVKQGDVIE 61
Query: 132 RHEPPVMAWDV-------SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDL 183
P V ++ I+ ++ DVL V KP + VHP + T+V G++ DL
Sbjct: 62 VTVPEVEDLEIIPEDLNLEIVYEDADVLVVNKPRGMVVHPAPGHATGTLVNGLMHHCKDL 121
Query: 184 APL------FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237
+ + VHR+D+ SGLL++A+N + Q+ V ++Y A V+G +
Sbjct: 122 SGINGVARPGIVHRIDKDTSGLLMVAKNDVAHESLVNQLVEKSVTRKYTALVHGHIAHEK 181
Query: 238 QVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTH 297
+D I + + A KGK A T F I G ++V C TGRTH
Sbjct: 182 GTIDAPIGRDQKDRQKQAVVD--------KGKHAVTHFQVIERFGEFTLVECRLETGRTH 233
Query: 298 QIRVHLQYTGYPIANDMLY 316
QIRVH+ Y G+P+A D Y
Sbjct: 234 QIRVHMNYIGFPLAGDPKY 252
>gi|325109066|ref|YP_004270134.1| pseudouridine synthase [Planctomyces brasiliensis DSM 5305]
gi|324969334|gb|ADY60112.1| pseudouridine synthase, RluA family [Planctomyces brasiliensis DSM
5305]
Length = 410
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 22/198 (11%)
Query: 134 EPPVMAWD-----VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP 188
EPP ++ + I ++ +L V KPP V HP G + T+ LQA D P
Sbjct: 140 EPPETVYEPEPFPLEIEYEDAWMLAVNKPPGVIAHPTGNMQSGTLCNYLQAHFDTQSGIP 199
Query: 189 -------VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD 241
VHRLDR SG++++A+ F E +V K Y+A + G + E +D
Sbjct: 200 GLLKPGIVHRLDRETSGVMLIAKTHRAHRNFVDAFEHSRVSKTYVALLEGDVAKEEGTID 259
Query: 242 VNINYNASAGRSTAESG---DSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
+ I G++T +S + GD K A T + + G+H++V +P+TGR HQ
Sbjct: 260 LPI------GQATVDSKVLMSARGDAK-NPKPAKTHWRVLKRLGSHTLVAAKPVTGRNHQ 312
Query: 299 IRVHLQYTGYPIANDMLY 316
IRVH G+P+A D Y
Sbjct: 313 IRVHFATIGHPLAGDEFY 330
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,691,089,731
Number of Sequences: 23463169
Number of extensions: 295807090
Number of successful extensions: 2189457
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 12227
Number of HSP's successfully gapped in prelim test: 3580
Number of HSP's that attempted gapping in prelim test: 2049141
Number of HSP's gapped (non-prelim): 108803
length of query: 399
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 254
effective length of database: 8,957,035,862
effective search space: 2275087108948
effective search space used: 2275087108948
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)