BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015839
(399 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0E0Y3|PUS7_ORYSJ RNA pseudourine synthase 7 OS=Oryza sativa subsp. japonica
GN=Os02g0512300 PE=2 SV=2
Length = 393
Score = 480 bits (1235), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/345 (67%), Positives = 272/345 (78%), Gaps = 13/345 (3%)
Query: 39 IVWQTPANPPVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYY 98
IVWQTPANPP ++DYIFRDGRR V+PYYFEFISHVKNRWAGKTIVDLF +EFKGRP +YY
Sbjct: 8 IVWQTPANPPERQDYIFRDGRRYVRPYYFEFISHVKNRWAGKTIVDLFTDEFKGRPREYY 67
Query: 99 VSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPP 158
V AVKCGR+QVD++MV Y V+SSQKISHFLHRHEPPV+ D++ILQ E DV+TVCKP
Sbjct: 68 VHAVKCGRLQVDDQMVHADYVVQSSQKISHFLHRHEPPVLGGDITILQNEADVVTVCKPA 127
Query: 159 SVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEA 218
SVPVHPCGQYRKNTVVGILQAEH L PLFPVHRLDRLVSGLLI A+NA KA+ FRQQIEA
Sbjct: 128 SVPVHPCGQYRKNTVVGILQAEHGLVPLFPVHRLDRLVSGLLIFAKNADKAESFRQQIEA 187
Query: 219 GKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRI 278
+ K Y+A+V GVFP+GEQ V+ N+++NA GRSTAE D G P+ GK ACTKF RI
Sbjct: 188 SLLQKEYVAKVVGVFPDGEQTVNANVHFNAREGRSTAEVCDGDGKAPI-GKQACTKFQRI 246
Query: 279 STNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHR--EGMSADRAAAYS 336
T+G HSIVLC+P+TGRTHQIRVHL++ GYPIAND +YL E+ + R +G +RA +
Sbjct: 247 CTDGIHSIVLCKPVTGRTHQIRVHLKHIGYPIANDEVYLSENFSPRSSKGTRINRATTLA 306
Query: 337 HHSP---PPVSSD-------KSESSSEDFSIDPMCTNCPNLAPKG 371
P P +D + + E+FSIDPMCTNCPNLAP G
Sbjct: 307 CSLPSSDPDSCADLGNNDTNEDTEADEEFSIDPMCTNCPNLAPVG 351
>sp|Q9LU60|PUS7_ARATH RNA pseudourine synthase 7 OS=Arabidopsis thaliana GN=At5g51140
PE=2 SV=1
Length = 395
Score = 480 bits (1235), Expect = e-134, Method: Compositional matrix adjust.
Identities = 245/372 (65%), Positives = 281/372 (75%), Gaps = 10/372 (2%)
Query: 1 MKRKREEEKSKANDSNSNGNGNGNGNGNGNGNSSNNMEIVWQTPANPPVKEDYIFRDGRR 60
MKRK++E D N +G +++ + +++ Q+ + K+DYIF GRR
Sbjct: 1 MKRKQQE------DDNDDGVEKAVSPVLATTSNTMSTDLLLQSSSKLSQKQDYIFHGGRR 54
Query: 61 NVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTV 120
+V+PYYFEFISHV RW GKTIVDLFA+EFKGRP DYYV AVK GRI+VD E+VPVSY V
Sbjct: 55 HVRPYYFEFISHVNKRWTGKTIVDLFADEFKGRPRDYYVGAVKSGRIKVDGEIVPVSYIV 114
Query: 121 KSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE 180
KSSQKI+HFLHRHEPPVM DV IL +EPDV+TVCKP SVPVHPCGQYRKNT+VGIL AE
Sbjct: 115 KSSQKITHFLHRHEPPVMIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTIVGILDAE 174
Query: 181 HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVV 240
HDL LFP+HRLDRLVSGLLI+AR A+KAD FRQQIE G V KRYIA+V GVFPE E +V
Sbjct: 175 HDLGTLFPIHRLDRLVSGLLIIARTAAKADFFRQQIEGGMVKKRYIAKVIGVFPEDEMIV 234
Query: 241 DVNINYNASAGRSTAESGDSLG-DTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
D NINYN S GRSTAE +S G D +KGK ACTKFTRI TNGTHS+V CEP+TGRTHQI
Sbjct: 235 DANINYNGSEGRSTAEDANSSGDDKKVKGKPACTKFTRIDTNGTHSLVSCEPVTGRTHQI 294
Query: 300 RVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHHSPPPVSSDKSESSSEDFSIDP 359
RVHLQYTG+PIAND LYL +H+ + E A R A VS D SSEDFSIDP
Sbjct: 295 RVHLQYTGHPIANDPLYLNQHIDNLETYIAKRIDAGERKI---VSPDDYVYSSEDFSIDP 351
Query: 360 MCTNCPNLAPKG 371
MCTNCP L P+G
Sbjct: 352 MCTNCPKLIPQG 363
>sp|Q149F1|RUSD2_MOUSE RNA pseudouridylate synthase domain-containing protein 2 OS=Mus
musculus GN=Rpusd2 PE=2 SV=2
Length = 553
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 168/268 (62%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G++++ +F+ EF+ +P YY +AV+ GR+ ++EE
Sbjct: 146 YYFEGGLRKVRPYYFDFQTYCKGRWVGRSLLHVFSTEFRSQPLSYYEAAVRAGRLHLNEE 205
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V +S +K + + + +HRHEPPV A + +L + DV+ + KP S+PVHPCG++R N
Sbjct: 206 PVQDLSIVLKDNDFLRNTVHRHEPPVTAEPIHLLAENNDVVVIDKPSSIPVHPCGRFRHN 265
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 266 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSEKIHEQVRDRQLEKEYVCRVAG 325
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP+ E + + ++Y R +GK T F R+S NG S+V
Sbjct: 326 EFPDKEVICKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGRSSVVQ 374
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 375 CRPLTGRTHQIRVHLQFLGHPILNDPIY 402
>sp|Q8IZ73|RUSD2_HUMAN RNA pseudouridylate synthase domain-containing protein 2 OS=Homo
sapiens GN=RPUSD2 PE=1 SV=2
Length = 545
Score = 227 bits (578), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 166/268 (61%), Gaps = 15/268 (5%)
Query: 53 YIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEE 112
Y F G R V+PYYF+F ++ K RW G +++ +F+ EF+ +P YY +AV+ GR+Q++E+
Sbjct: 133 YYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEAAVRAGRLQLNEK 192
Query: 113 MVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKN 171
V ++ +K + + + +HRHEPPV A + +L + DV+ V KP S+PVHPCG++R N
Sbjct: 193 PVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHN 252
Query: 172 TVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
TV+ IL EH L L P+HRLDRL SG+L+ A+ A+ ++ +Q+ ++ K Y+ RV G
Sbjct: 253 TVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 312
Query: 232 VFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVL 288
FP E + ++Y R +GK T F R+S NG S+V
Sbjct: 313 EFPTEEVTCKEPILVVSYKVGVCRVDP-----------RGKPCETVFQRLSYNGQSSVVR 361
Query: 289 CEPITGRTHQIRVHLQYTGYPIANDMLY 316
C P+TGRTHQIRVHLQ+ G+PI ND +Y
Sbjct: 362 CRPLTGRTHQIRVHLQFLGHPILNDPIY 389
>sp|Q09709|YA32_SCHPO Uncharacterized protein C18B11.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC18B11.02c PE=3 SV=1
Length = 394
Score = 217 bits (552), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/277 (40%), Positives = 168/277 (60%), Gaps = 9/277 (3%)
Query: 42 QTPANPPVKE-DYIFR-DGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYV 99
+ P P+K+ +Y+F+ DG R V PYY+E+I+ K RW GKT++++F EF+ R YY
Sbjct: 3 KRPKRDPLKDCEYVFKGDGLRRVPPYYYEYITFAKLRWYGKTLLEVFNTEFRDRESGYYE 62
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPS 159
A++ G+++V+ ++ V +++ +SH HRHEPPV V I+ ++ + + KP
Sbjct: 63 KAIRNGQVKVNNQIGNVDTLIENGYIVSHHAHRHEPPVSDQPVGIVHEDESYVVIDKPAG 122
Query: 160 VPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAG 219
VPVHP G+Y NTV+ IL E+ + L+P +RLDRL SGL+ +++ A+ R + +
Sbjct: 123 VPVHPTGRYNHNTVLHILMKENKCSLLYPCNRLDRLTSGLMFFSKSPKAAEEMRVHMISK 182
Query: 220 KVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRIS 279
+ K Y+ARV G FP +V+ A T L GK A T F RI+
Sbjct: 183 SLKKEYVARVIGEFPNSGEVI-------CDAPLLTVAPTLGLNRIHPDGKEASTVFKRIA 235
Query: 280 TNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+G S+VLC+P+TGRTHQ+RVHLQY GYPIAND +Y
Sbjct: 236 FDGHTSLVLCKPLTGRTHQLRVHLQYLGYPIANDPIY 272
>sp|Q12069|PUS9_YEAST tRNA pseudouridine(32) synthase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PUS9 PE=1
SV=1
Length = 462
Score = 202 bits (513), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 157/263 (59%), Gaps = 7/263 (2%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R +KPY+F + + K RW K +VD+F EF+ R +YY ++ G + +++E +S
Sbjct: 106 RKIKPYHFTYRTFCKERWRDKKLVDVFISEFRDRESEYYKRTIENGDVHINDETADLSTV 165
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
+++ I+H +HRHEPPV + + ++ ++ +++ + KP +PVHP G+YR NT+ +LQ
Sbjct: 166 IRNGDLITHQVHRHEPPVTSRPIKVIFEDDNIMVIDKPSGIPVHPTGRYRFNTITKMLQN 225
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ P +RLDRL SGL+ LA+ AD Q++A +V K Y+A+V G FPE E +
Sbjct: 226 NLGFV-VNPCNRLDRLTSGLMFLAKTPKGADNIGDQLKAREVTKEYVAKVVGEFPETEVI 284
Query: 240 VDVNINY-NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
V+ + + D G K A T F RIS +G SIV C+P+TGR+HQ
Sbjct: 285 VEKPLKLIEPRLALNAVCQMDEKG-----AKHAKTVFNRISYDGKTSIVKCKPLTGRSHQ 339
Query: 299 IRVHLQYTGYPIANDMLYLCEHV 321
IRVHLQY G+PIAND +Y + V
Sbjct: 340 IRVHLQYLGHPIANDPIYSNDEV 362
>sp|Q12362|RIB2_YEAST Bifunctional protein RIB2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RIB2 PE=1 SV=1
Length = 591
Score = 198 bits (504), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 156/257 (60%), Gaps = 5/257 (1%)
Query: 60 RNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT 119
R ++PY+F + + K RW + +VD+F EF+ R YY + G++ +++E +
Sbjct: 79 RKIEPYFFTYKTFCKERWRDRKLVDVFVSEFRDREPSYYSKTIAEGKVYLNDEPANLDTI 138
Query: 120 VKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
++ I+H +HRHEPPV + + I+ ++ D+L + KP S+PVHP G+YR NT+ +L+
Sbjct: 139 IRDGDLITHKVHRHEPPVTSKPIDIVFEDEDILVIDKPSSIPVHPTGRYRFNTITKMLER 198
Query: 180 EHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV 239
+ + + P +RLD+ SGL+ LA+ AD Q++A +V K Y+ARV G FP G +
Sbjct: 199 QLGYS-VHPCNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARVKGEFPIG--I 255
Query: 240 VDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQI 299
V+V+ + + + + D K A T F R+S +G SIV C+P+TGRTHQI
Sbjct: 256 VEVDKPVRSVNPKVALNAVCEMSDE--NAKHAKTVFQRVSYDGQTSIVKCKPLTGRTHQI 313
Query: 300 RVHLQYTGYPIANDMLY 316
RVHLQY G+PIAND +Y
Sbjct: 314 RVHLQYLGFPIANDPIY 330
>sp|O16686|YK27_CAEEL Uncharacterized protein K07E8.7 OS=Caenorhabditis elegans
GN=K07E8.7 PE=3 SV=1
Length = 432
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 161/290 (55%), Gaps = 11/290 (3%)
Query: 48 PVKEDYIFRDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRI 107
P+K + DG R++ PY+ + + K RW G+ +V++F+ EF +Y A K GRI
Sbjct: 53 PMKVPFKIVDGVRHLAPYWACYRTRTKGRWIGRKMVEVFSGEFLSTNRNYAKIACKMGRI 112
Query: 108 QVD-EEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCG 166
V+ E+M V Y +++ ++ H+ HRHE P+ + ++ + D+ V KPPS+PVH CG
Sbjct: 113 YVNGEQMTDVDYVMRNGDRVEHWAHRHEHPIRDLPIRVISETDDLFVVEKPPSLPVHTCG 172
Query: 167 QYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYI 226
QY +TV+G L+ L +HRLDR SG+L+ A+N F+ ++ G+ K YI
Sbjct: 173 QYAIHTVLGQLRVNEGRTGLRVLHRLDRATSGVLLFAKNYETDLEFKTTLKQGEWSKEYI 232
Query: 227 ARVNGVFPEGEQVVDVNIN-YNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHS 285
+V+GVFP+ EQV + I S G GK A ++F ++ ++GT S
Sbjct: 233 CKVDGVFPDEEQVCEQPIGPLVISMGIQCVRPD---------GKDAKSRFRKLWSDGTQS 283
Query: 286 IVLCEPITGRTHQIRVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAY 335
+V TGRTHQIRVH Q+ G+PIA D +Y +G +AD ++
Sbjct: 284 VVQVHIETGRTHQIRVHSQFLGHPIAGDQIYNSAVWGPTKGKNADYQKSF 333
>sp|P53294|PUS6_YEAST tRNA pseudouridine(31) synthase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUS6 PE=1 SV=1
Length = 404
Score = 178 bits (452), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 163/304 (53%), Gaps = 43/304 (14%)
Query: 56 RDGRRNVKPYYFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP 115
++G R V+PYY + VK RW GK ++D+ EFK RP YY+ ++ G ++ + VP
Sbjct: 12 QNGLRKVRPYYNRRSAFVKGRWLGKLLIDVLVSEFKLRPRAYYLDQIRKGTYRLIRDGVP 71
Query: 116 V------SYTVKSSQKISHFLHRHEPPVMAW---------------DVSILQKEPDVLTV 154
+ + +K+ + H+HEPPV W +I+ ++ +L +
Sbjct: 72 LVPDHLMTTIIKNHDVLETTTHKHEPPVKQWCSQEVEAEDLPGRIAGFNIVFEDESILVI 131
Query: 155 CKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQ 214
KP +PVHP GQ+ +NT+ +L+ H + L P +RLD++ SGLLILA+N+ A ++
Sbjct: 132 DKPSGIPVHPTGQFYQNTITELLKL-HGVDAL-PCYRLDKITSGLLILAKNSQSAGEIQK 189
Query: 215 QIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPL-------- 266
I + +IK Y+ARV G FP E ++D N NA+ S ++ TP+
Sbjct: 190 SIRSRDMIKIYLARVKGRFPHSELILD---NENAAETTFEDTSKVTVEMTPIYSIDPKRQ 246
Query: 267 ------KGKAACTKF--TRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYLC 318
K A TKF R ++ ++V C+PITGRTHQIR+HL G+PI ND +Y C
Sbjct: 247 FPVGLSTSKDAITKFYPIRYFSHADETVVACKPITGRTHQIRIHLARLGHPIVNDSVY-C 305
Query: 319 EHVT 322
H+T
Sbjct: 306 SHIT 309
>sp|Q9HZM9|RLUC_PSEAE Ribosomal large subunit pseudouridine synthase C OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rluC PE=3 SV=1
Length = 318
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 18/251 (7%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
AG+ I + KG P ++ G ++V++ + Y +++ ++ R
Sbjct: 21 AGQRIDNFLIARLKGAPKTLIYRILRKGEVRVNKGRIKPDYRLQAGDQVRVPPLRLAERD 80
Query: 134 EPPVMA------WDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLF 187
EP +A + +I+ ++ ++ V KP + VH + Q D +
Sbjct: 81 EPAPLAQGLLERMEAAIVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQLRPDAKDIE 140
Query: 188 PVHRLDRLVSGLLILARNASKADLFRQQIEAGKVI-KRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SGLL++A+ S + + K++ KRY A V G +P G++ N
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHEALRGEKIVDKRYHALVRGHWPAGKK------NV 194
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRVHLQY 305
A ++ SG+ + + ++GK A T+F + G ++V PITGRTHQIRVH ++
Sbjct: 195 RAPLLKNNLRSGERMVEVNVEGKDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKH 254
Query: 306 TGYPIANDMLY 316
G+ IA D Y
Sbjct: 255 AGHAIAGDPKY 265
>sp|Q45480|YLYB_BACSU Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus
subtilis (strain 168) GN=ylyB PE=3 SV=3
Length = 303
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 18/225 (8%)
Query: 102 VKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEP-PVMA--WDVSILQKEPDVLTVCKPP 158
VK G++ V+ V +Y ++ +++ + E V+A D+ I ++ DVL V KP
Sbjct: 37 VKDGQVVVNGSAVKANYKIQPGDQVTVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPR 96
Query: 159 SVPVHPCGQYRKNTVVGILQAE-HDLAPL------FPVHRLDRLVSGLLILARNASKADL 211
+ VHP + T+V L A DL+ + VHR+D+ SGLL++A+N +
Sbjct: 97 GMVVHPAPGHLTGTLVNGLMAHCTDLSGINGVMRPGIVHRIDKDTSGLLMVAKNDMAHES 156
Query: 212 FRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAA 271
Q+ V ++Y A V+G+ + +D I + +S + D GK A
Sbjct: 157 LVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTVTRD--------GKNA 208
Query: 272 CTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
T F + ++V C+ TGRTHQIRVH++Y G+P+A D Y
Sbjct: 209 VTHFHVLERFQDFTLVECQLETGRTHQIRVHMKYIGFPLAGDPKY 253
>sp|Q8Z7J7|RLUC_SALTI Ribosomal large subunit pseudouridine synthase C OS=Salmonella
typhi GN=rluC PE=3 SV=1
Length = 319
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 112/250 (44%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKI----------- 126
AG+ I + + KG P ++ G ++V+++ + Y ++S ++
Sbjct: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLESGDEVRIPPVRVAERE 77
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 137
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + + V +
Sbjct: 138 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLK 197
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 198 N------ILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 252 GHPIAFDDRY 261
>sp|Q8ZQ16|RLUC_SALTY Ribosomal large subunit pseudouridine synthase C OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rluC PE=3 SV=1
Length = 319
Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 112/250 (44%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ + Y V+ +++
Sbjct: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAERE 77
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 137
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + + V +
Sbjct: 138 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLK 197
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 198 N------ILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 252 GHPIAFDDRY 261
>sp|Q8X8J3|RLUC_ECO57 Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli O157:H7 GN=rluC PE=3 SV=1
Length = 319
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 112/250 (44%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ + Y V+ +++
Sbjct: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAERE 77
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 137
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + + V +
Sbjct: 138 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLK 197
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 198 N------ILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 252 GHPIAFDDRY 261
>sp|P0AA40|RLUC_SHIFL Ribosomal large subunit pseudouridine synthase C OS=Shigella
flexneri GN=rluC PE=3 SV=1
Length = 319
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 112/250 (44%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ + Y V+ +++
Sbjct: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAERE 77
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 137
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + + V +
Sbjct: 138 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLK 197
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 198 N------ILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 252 GHPIAFDDRY 261
>sp|P0AA39|RLUC_ECOLI Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli (strain K12) GN=rluC PE=1 SV=1
Length = 319
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 112/250 (44%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ + Y V+ +++
Sbjct: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAERE 77
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 137
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + + V +
Sbjct: 138 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLK 197
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 198 N------ILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 252 GHPIAFDDRY 261
>sp|Q8FIP7|RLUC_ECOL6 Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluC
PE=3 SV=1
Length = 319
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 112/250 (44%), Gaps = 17/250 (6%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYT-----------VKSSQKI 126
AG+ I + + KG P ++ G ++V+++ + Y V+ +++
Sbjct: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAERE 77
Query: 127 SHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL 186
+ H V A IL ++ +L + KP VH + G+ + L
Sbjct: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 137
Query: 187 FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINY 246
VHRLDR SG+L++A+ S +Q+ + K Y+A V G + + V +
Sbjct: 138 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSYVKSVQAPLLK 197
Query: 247 NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306
N +SG+ + +GK + T+F ++V C P+TGRTHQIRVH QY
Sbjct: 198 N------ILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251
Query: 307 GYPIANDMLY 316
G+PIA D Y
Sbjct: 252 GHPIAFDDRY 261
>sp|P75485|Y292_MYCPN Uncharacterized RNA pseudouridine synthase MG209 homolog
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=MPN_292 PE=3 SV=1
Length = 309
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 32/206 (15%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLI 201
+ IL ++ ++ V KP + HP +++G + P+F VHRLDR SG+++
Sbjct: 80 LDILYEDEQIMVVNKPNGLISHPTSFNESESLLGAALFHCNHQPVFLVHRLDRDTSGVIM 139
Query: 202 LARNASKADLFRQQIEAGKVIKRY-IARVNGVFPEGEQVVDVNINYNASAGRSTA---ES 257
LA+N S + L Q+ +V+KRY +A V+ FP ++ +G +A
Sbjct: 140 LAKNQS-SLLHLQKQLQQRVMKRYYLALVH--FP-----------LDSLSGTISAPLERV 185
Query: 258 GDS-----LGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIAN 312
G++ +G++ K K A TKFT ++ N +++ CE +TGRTHQIRVHLQ+ +P+ N
Sbjct: 186 GNNKVMWKVGNSSNKAKNAFTKFTVLNQNEKAALIKCELLTGRTHQIRVHLQFIKHPVYN 245
Query: 313 DMLYLCEHVTHREGMSADRAAAYSHH 338
D LY G+ +++A Y +
Sbjct: 246 DPLY---------GLKSEQATEYGQY 262
>sp|P44433|RLUC_HAEIN Ribosomal large subunit pseudouridine synthase C OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rluC PE=3 SV=1
Length = 322
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 119/254 (46%), Gaps = 25/254 (9%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS----HFLHRH 133
+G+ I + + KG P V+ G ++V++ + Y +++ + ++
Sbjct: 23 SGQRIDNYLLAKLKGVPKSLIYRIVRKGEVRVNKGRIKPEYKLQTGDVVRIPPVRVAEKN 82
Query: 134 EPP-------VMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP- 185
+ P V A + IL ++ ++ + KP + VH G+++A L P
Sbjct: 83 DAPISKNLNKVAALENQILFEDDCLIILNKPSGIAVHGGSGLN----FGVIEALRALRPE 138
Query: 186 ---LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDV 242
L VHRLDR SG+L++A+ S +Q+ V K Y+A V G + +V+
Sbjct: 139 ARFLELVHRLDRDTSGILLIAKKRSALRNLHEQLRVKTVQKDYLALVRGQWQSHIKVI-- 196
Query: 243 NINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVH 302
AS ++ SG+ + +GK + T+F+ ++V P+TGRTHQIRVH
Sbjct: 197 ----QASLLKNELSSGERIVRVSEQGKPSETRFSIEERYINATLVKASPVTGRTHQIRVH 252
Query: 303 LQYTGYPIANDMLY 316
QY G+PIA D Y
Sbjct: 253 TQYAGHPIALDDKY 266
>sp|Q89AH2|RLUC_BUCBP Ribosomal large subunit pseudouridine synthase C OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp)
GN=rluC PE=3 SV=1
Length = 315
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 118/256 (46%), Gaps = 37/256 (14%)
Query: 82 IVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV---- 137
I + + FK P++ ++ G+I+++++ + +Y +K + PP+
Sbjct: 22 IDNFLRKTFKRLPFNLICKIIRTGQIRINKKRINQNYKLKLGDSV------RIPPITIQS 75
Query: 138 -------------MAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLA 184
+ ++ IL ++ L + KP + VH G+++ L
Sbjct: 76 DSNKKIKLNTRLSIIFNNMILYEDNYFLILNKPSGMSVHSGSGIN----YGMIENLRILR 131
Query: 185 P----LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVV 240
P L VHRLDR SG+LI+A+ S +Q+ K+ K+Y+A V+GV+P
Sbjct: 132 PYNRYLDLVHRLDRDTSGVLIIAKKRSILRNLHEQLREKKIKKKYVALVHGVWP------ 185
Query: 241 DVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIR 300
D+ + + ++++ ++ KGK + T F ++++ PITGRTHQIR
Sbjct: 186 DILKSISKPLLKTSSRKNKNIVKIDPKGKESITHFNIKKKYTKNTLISITPITGRTHQIR 245
Query: 301 VHLQYTGYPIANDMLY 316
VHL + YPI D Y
Sbjct: 246 VHLLHLNYPIVLDAKY 261
>sp|P70870|RLUD_BORBU Ribosomal large subunit pseudouridine synthase D OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=rluD PE=3 SV=2
Length = 326
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA----------EHDLAPLFPVHR 191
++I+ ++ +V+ + KP + HP + +TVV L E + P VHR
Sbjct: 84 IAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGI-VHR 142
Query: 192 LDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAG 251
LD+ SG+LI A+N S QQ + + K YIA V G F ++ I+ +
Sbjct: 143 LDKDTSGVLICAKNISTLRFLAQQFKDKRTNKVYIAIVKGNFNSFFGSIESFIDRDKHNR 202
Query: 252 RSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIA 311
+ + S D +GK A T++ + G +S++ +P TGRTHQ+RVH++Y +PI
Sbjct: 203 KKFSVSKD-------RGKKALTEYRLLLNFGEYSLLALKPKTGRTHQLRVHMKYLNFPIL 255
Query: 312 NDMLY 316
D +Y
Sbjct: 256 GDEVY 260
>sp|P59835|RLUC_HAEDU Ribosomal large subunit pseudouridine synthase C OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rluC PE=3 SV=1
Length = 320
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 116/254 (45%), Gaps = 25/254 (9%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPP- 136
AG+ + + + KG P V+ G ++V++ V Y ++ + + L R P
Sbjct: 21 AGQRLDNFLLAKLKGVPKSLIYRIVRKGEVRVNKGRVKPDYKLQHNDIVRIPLVRVTPKN 80
Query: 137 ----------VMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAP- 185
V + IL ++ +L + KP + VH G+++A L P
Sbjct: 81 EAPISTKLNKVAELEQHILYEDDVMLVLNKPSGIGVHGGS----GLSFGVIEALRALRPQ 136
Query: 186 ---LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDV 242
L VHR+DR SG+L++A+ S +Q+ V K Y+A V G + V+
Sbjct: 137 ARFLELVHRIDRDTSGILLVAKKRSALRALHEQLREKVVQKDYLALVRGQWQAHINVI-- 194
Query: 243 NINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVH 302
A ++ +SG+ + +GK + T+F+ +++ PITGRTHQIRVH
Sbjct: 195 ----KAPLLKNELQSGERIVKVSEQGKPSETRFSIEERYPNATLIKASPITGRTHQIRVH 250
Query: 303 LQYTGYPIANDMLY 316
QY G+PIA D Y
Sbjct: 251 TQYAGHPIACDDRY 264
>sp|Q9CM51|RLUC_PASMU Ribosomal large subunit pseudouridine synthase C OS=Pasteurella
multocida (strain Pm70) GN=rluC PE=3 SV=1
Length = 326
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 119/262 (45%), Gaps = 33/262 (12%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV---------------PVSYTVKS 122
AG+ I + + KG P ++ G ++V++ + PV + K
Sbjct: 24 AGQRIDNYLLAKLKGVPKSLIYRILRKGEVRVNKGRIKPEYKLQANDIVRVPPVRVSEKE 83
Query: 123 SQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHD 182
IS L++ V + IL ++ +L + KP + VH G+++A
Sbjct: 84 HAPISTKLNK----VSQLEKQILFEDECLLVLNKPSGIAVHGGS----GLSFGVIEALRT 135
Query: 183 LAP----LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQ 238
L P L VHRLDR SG+L++A+ S +Q+ V K Y+A V G + +
Sbjct: 136 LRPDARFLELVHRLDRDTSGILLVAKKRSALRSLHEQLREKTVQKDYLALVRGQWQSHCK 195
Query: 239 VVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQ 298
VV + N + SG+ + +GK + T+F+ ++V P+TGRTHQ
Sbjct: 196 VVKAPLLKNELS------SGERIVRVSEQGKPSETRFSIEERYEYATLVKASPVTGRTHQ 249
Query: 299 IRVHLQYTGYPIANDMLYLCEH 320
IRVH QY G+PIA D Y +H
Sbjct: 250 IRVHTQYAGHPIALDDKYGDKH 271
>sp|P72970|Y1592_SYNY3 Uncharacterized RNA pseudouridine synthase slr1592 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=slr1592 PE=3 SV=1
Length = 291
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 115/238 (48%), Gaps = 12/238 (5%)
Query: 82 IVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD 141
++D +++ + + ++ G+I+VD + V +Y +++ Q ++++ P +
Sbjct: 1 MLDFYSQRYLHSERQAWQERIEQGQIEVDGKTVDPTYPLQAGQTLTYWRSPWVEPEVPLQ 60
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLI 201
+S+L ++ D+ + KP +PV P G + +TV+ L+ ++ LFP+HRL SGLL+
Sbjct: 61 LSVLHRDEDLWAIDKPSGLPVLPGGDFVYHTVLEQLKIQYPQESLFPLHRLGTGTSGLLL 120
Query: 202 LARNA-SKADLFRQQIE--AGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESG 258
L R+ + +L RQ E K+ + I + PE + + G+
Sbjct: 121 LGRSTLGRRELSRQFREHICRKIYRTVIGPCD--LPE-------KFECHQAIGKIPYPQL 171
Query: 259 DSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ GK A + ++ + + + E TGR HQIR+HL GYP+ D LY
Sbjct: 172 GYIYAASSHGKPAQSYGRILARSPEKTWLEVEIRTGRPHQIRIHLASLGYPLLGDRLY 229
>sp|Q45826|Y901_CHLAA Uncharacterized RNA pseudouridine synthase Caur_0901
OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635
/ J-10-fl) GN=Caur_0901 PE=3 SV=2
Length = 316
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 93/181 (51%), Gaps = 15/181 (8%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH-DLA---PLFP--VHRLDRL 195
+ ++ ++ D+ + KP + VHP + + T+V L A + DLA L P VHRLDR
Sbjct: 91 LDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALLARYPDLAIGGELRPGIVHRLDRD 150
Query: 196 VSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTA 255
SGLL++AR+ Q +A ++ K Y A V G PE +D I + A
Sbjct: 151 TSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIGRPPE-TGTIDAPIGRDPRDRLRMA 209
Query: 256 ESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315
D G+ A T + + T G +S++ + TGRTHQIRVHL++ GYPI D +
Sbjct: 210 VVPD--------GRPARTHYRLLDTFGDYSLLEVQLETGRTHQIRVHLRHLGYPIVGDPV 261
Query: 316 Y 316
Y
Sbjct: 262 Y 262
>sp|Q87N15|RLUC_VIBPA Ribosomal large subunit pseudouridine synthase C OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluC PE=3 SV=1
Length = 315
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 113/261 (43%), Gaps = 41/261 (15%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPV 137
AG+ I + + K P V+ G ++V+++ + Y +K+ + PPV
Sbjct: 18 AGQRIDNFLRNQLKDIPKSMIYRIVRKGEVRVNKKRIKAEYKLKAGDLV------RIPPV 71
Query: 138 MAW----DVS--------------ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
DV+ I+ ++ +L + KP VH + G ++A
Sbjct: 72 TVEKKEEDVAPSTKLNKVAELEHMIIYEDDHMLILNKPSGTAVHGGSGLK----FGAIEA 127
Query: 180 EHDLAP----LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
L P L VHR+DR SG+L++A+ S + Q V K Y A V G +
Sbjct: 128 LRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVKKFYFALVMGQWKS 187
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGR 295
+VV+ + N +S+ GK + T+F + +++ PITGR
Sbjct: 188 SCKVVNAPLLKNEV---------NSIVRVNPNGKPSETRFKILEKFEQATLIQASPITGR 238
Query: 296 THQIRVHLQYTGYPIANDMLY 316
THQIRVH QYTG+PIA D Y
Sbjct: 239 THQIRVHTQYTGHPIAWDDRY 259
>sp|O50310|Y723_CHLP8 Uncharacterized RNA pseudouridine synthase Cpar_0723
OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0723
PE=3 SV=1
Length = 327
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 114/233 (48%), Gaps = 24/233 (10%)
Query: 100 SAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWD---VSILQKEPDVLTVCK 156
+A++ GR+ V+ + V +Y VKS I R P +A + ++IL ++ D++ + K
Sbjct: 32 AAIEEGRVLVNGKPVKSNYRVKSCDHIHLTFLRPPAPELAPEDIPITILYEDDDLMVIDK 91
Query: 157 PPSVPVHPC-GQYRKNTVVGILQ------AEHDLAPLFP--VHRLDRLVSGLLILARNAS 207
+ VHP G + IL E D + P VHRLD+ SGL+I+A+N +
Sbjct: 92 EAGMVVHPAFGNWTGTLANAILHHLGKDADELDKTEMRPGIVHRLDKDTSGLIIIAKNPT 151
Query: 208 KADLFRQQIEAGKVIKRYIARVNGVFPEGEQ-VVDVNINYNASAGRSTAESGDSLGDTPL 266
+Q +V K Y A V GV P+ E + NI GRS ++ + + P
Sbjct: 152 ALHKLARQFANRQVEKVYKAIVWGV-PKAESGTIKTNI------GRS-HKNRKVMANFPY 203
Query: 267 KG---KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+G K A T + + G S++ TGRTHQIRVHLQ+ G+ I D Y
Sbjct: 204 EGAEGKHAITDYQVVEDLGYFSLMDVTLHTGRTHQIRVHLQHLGHSILGDETY 256
>sp|Q8D8G1|RLUC_VIBVU Ribosomal large subunit pseudouridine synthase C OS=Vibrio
vulnificus (strain CMCP6) GN=rluC PE=3 SV=1
Length = 315
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 113/263 (42%), Gaps = 29/263 (11%)
Query: 70 ISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISH- 128
I + AG+ I + + K P V+ G ++V+++ V Y + + +
Sbjct: 10 IVDIDEDMAGQRIDNFLRNQLKDVPKSMIYRIVRKGEVRVNKKRVKAEYKLAAGDVVRIP 69
Query: 129 --FLHRHEP---------PVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGIL 177
L + +P V I+ ++ +L + KP VH + G +
Sbjct: 70 PVTLEKKDPETAPSTKLNKVAELQDLIIYEDDHLLVLNKPSGTAVHGGSGLK----FGAI 125
Query: 178 QAEHDLAP----LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVF 233
+A L P L VHR+DR SG+L++A+ S + Q V K Y A V G +
Sbjct: 126 EALRALRPEARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYFALVMGEW 185
Query: 234 PEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPIT 293
+VV+ + N +S+ GK + T+F I ++V PIT
Sbjct: 186 KNSCKVVNAPLLKNEV---------NSIVRVNPNGKPSETRFKVIEKFPQATLVQASPIT 236
Query: 294 GRTHQIRVHLQYTGYPIANDMLY 316
GRTHQIRVH QY+G+PIA D Y
Sbjct: 237 GRTHQIRVHTQYSGHPIAWDDRY 259
>sp|P47451|Y209_MYCGE Uncharacterized RNA pseudouridine synthase MG209 OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=MG209 PE=3 SV=1
Length = 308
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 18/228 (7%)
Query: 99 VSAVKCGRIQVDEEMVPVSYTVKSSQKI----------SHFLHRHEPPVMAWDVSILQKE 148
V + G+I+V+E++ + + + + S F+ EP + +V L ++
Sbjct: 29 VKLIMNGQIKVNEKLTFKNSLIVAKDDVIKVEIHDETTSDFITSVEPYNLKLEV--LFED 86
Query: 149 PDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASK 208
D++ + KP + HP K +++ ++ P++ VHRLDR SG +++ +N +
Sbjct: 87 KDLMVINKPSGLLTHPTTFNEKASLLAACIFHNNKNPVYLVHRLDRDTSGAIVVCKNQAS 146
Query: 209 ADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKG 268
+ Q++ + + Y+A V+ FP +N A R K
Sbjct: 147 LLNLQNQLQNRTLKRYYVALVH--FPFNALTGSIN----APLARVNNNKVMFKIAQTAKA 200
Query: 269 KAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K A TKF I+ N +++ E +TGRTHQIRVHL++ +P+ ND LY
Sbjct: 201 KQAITKFKVINQNEKAALISLELLTGRTHQIRVHLKFIQHPVYNDPLY 248
>sp|Q0DST9|PUS5_ORYSJ RNA pseudourine synthase 5 OS=Oryza sativa subsp. japonica
GN=Os03g0288500 PE=2 SV=2
Length = 397
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 125/291 (42%), Gaps = 42/291 (14%)
Query: 64 PYYFEFISHV-----KNRWAGKTIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMV--P 115
P + E IS++ + A T+++ ++ +K P ++ ++ G+I VD E+ P
Sbjct: 29 PEFNEGISYIDTFRCADAGATTTLIEFYSTSYKSSAPLPGWIKRIRDGQITVDGEVATDP 88
Query: 116 VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVG 175
+ S+ + H L EP + +L ++ D++ + KP + V P G +++ TV+
Sbjct: 89 DMILREGSKLVYHRLPWQEP-FAPHLLDVLYEDDDMIALNKPSGLQVLPKGLFQQRTVLA 147
Query: 176 ILQAEHDLAPL-------------FPVHRLDRLVSGLLILAR-----------------N 205
LQ + P PVHRL R SGLL+ A+ N
Sbjct: 148 QLQLKDWKMPSSFCSKRKDAQSHPVPVHRLGRGTSGLLLCAKTKLAKAQLAAYFAEGATN 207
Query: 206 ASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTP 265
A K+ +A K+ K Y A V G+ E ++ I G + P
Sbjct: 208 AGKSRDETDICKARKISKFYRALVTGILENDEVMITQPIGLVRYPGVAEGLYAACSSGKP 267
Query: 266 LKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
K + +I H+++ E +GR HQIR+HL Y G+P+ +D LY
Sbjct: 268 AMSKVRVLERLKIHN---HTLIQVEIHSGRPHQIRIHLAYIGHPLVDDPLY 315
>sp|Q8XYX8|RLUD_RALSO Ribosomal large subunit pseudouridine synthase D OS=Ralstonia
solanacearum (strain GMI1000) GN=rluD PE=3 SV=1
Length = 358
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 17/185 (9%)
Query: 141 DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP----VHRLDRLV 196
D+ ++ ++ +L + KP + VHP TV+ L + A P VHRLD+
Sbjct: 115 DLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRYPQAAGLPRAGIVHRLDKET 174
Query: 197 SGLLILARNA-SKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTA 255
SGL+++AR ++ DL RQ ++A V + Y+A V G PE + +A GR
Sbjct: 175 SGLMVVARTLPAQTDLVRQ-LQARTVKRTYLALVWGETPEAGTI-------DAPIGRDPR 226
Query: 256 ESGDSLGDTPLKGKAACTKFTRIST----NGTHSIVLCEPITGRTHQIRVHLQYTGYPIA 311
+ GK A T F + S+V C+ TGRTHQIRVH + G+P+
Sbjct: 227 DRTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVQCQLETGRTHQIRVHFESEGHPLL 286
Query: 312 NDMLY 316
D +Y
Sbjct: 287 GDPVY 291
>sp|Q8ZFU1|RLUC_YERPE Ribosomal large subunit pseudouridine synthase C OS=Yersinia pestis
GN=rluC PE=3 SV=1
Length = 320
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 112/255 (43%), Gaps = 27/255 (10%)
Query: 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTV---------------KS 122
AG+ I + + KG P V+ G ++V++ + Y + +
Sbjct: 18 AGQRIDNFLLAKLKGVPKSMIYRIVRKGEVRVNKGRIKPEYKLADGDVVRVPPVRVAERE 77
Query: 123 SQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHD 182
++S L + V A IL ++ +L + KP VH + G+ +
Sbjct: 78 EVQVSAKLDK----VAALADCILFEDDYLLVLNKPSGTAVHGGSGLSFGVIEGLRALRPE 133
Query: 183 LAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDV 242
L VHRLDR SG+L++A+ S +Q+ + K Y+A V G + + +
Sbjct: 134 ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRLKSMQKDYLALVRGQWQSHCKAIQA 193
Query: 243 NINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH-SIVLCEPITGRTHQIRV 301
+ N +SG+ + +GK + T+F +I H ++V P+TGRTHQIRV
Sbjct: 194 PLLKN------IMQSGERVVKVSSEGKPSETRF-KIEERFEHATLVKASPVTGRTHQIRV 246
Query: 302 HLQYTGYPIANDMLY 316
H + G+PIA D Y
Sbjct: 247 HALHAGHPIAFDDRY 261
>sp|P59840|TRUC_HAEDU tRNA pseudouridine synthase C OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=truC PE=3 SV=1
Length = 243
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 22/189 (11%)
Query: 141 DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDL-APLFPVHRLDRLVSGL 199
++ IL ++ +++ + KP + VH + T+ + + +FP+HRLDR SG+
Sbjct: 2 ELDILYRDDELIAINKPAGMLVHRSWLDKAETLFAMQTLRDQINQHVFPIHRLDRPTSGV 61
Query: 200 LILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQV---VDVNINYNA------SA 250
L+ A N+ A L +Q E KV K Y+A V G E ++ + V ++ A A
Sbjct: 62 LLFALNSEMARLMSEQFEQHKVEKEYLAIVRGYIAEKGEIDYPLKVILDKIADKFSQPKA 121
Query: 251 GRSTAESGDSLGDTPL---KGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTG 307
+ +L + GK A T++ S+V P TGR HQ+R H+++
Sbjct: 122 AQQAVTFYQNLAKVEMPYSTGKYATTRY---------SLVALSPKTGRKHQLRRHMKHLF 172
Query: 308 YPIANDMLY 316
+PI D Y
Sbjct: 173 HPIMGDTKY 181
>sp|P57430|RLUC_BUCAI Ribosomal large subunit pseudouridine synthase C OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=rluC PE=3 SV=1
Length = 314
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 115/270 (42%), Gaps = 42/270 (15%)
Query: 70 ISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHF 129
I ++ + I + +FK P ++ G+I+++++ + Y +K +
Sbjct: 10 IIYINKEMLNQRIDNFMRSKFKSVPKSMIYRIIRTGKIRINKKRIKPHYKLKIGDILK-- 67
Query: 130 LHRHEPPV-MAWDVS---------------ILQKEPDVLTVCKPPSVPVHPCGQYRKNTV 173
PP+ + D+ IL ++ +L + KP + VH
Sbjct: 68 ----IPPIKILCDIKNTFFPLNHSTNLLNRILYEDSHLLIINKPSGIAVHGGSGLN---- 119
Query: 174 VGILQAEHDLAPLFP----VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARV 229
G+++ L PL VHR+DR SG+LILA+ + +Q+ K+ K YIA V
Sbjct: 120 FGVIEYFRKLRPLNKFLELVHRIDRDTSGVLILAKKRTSLVSLHEQLREKKIKKEYIALV 179
Query: 230 NGVFPEGEQVVD---VNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSI 286
+G++P+ + + + I + + KGK + T F + ++
Sbjct: 180 HGLWPDHIKKISEPLLKIQFKNKQKMVLIDK---------KGKPSETYFQIKKKFSSSTL 230
Query: 287 VLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ P TGRTHQIRVH + G+PI D Y
Sbjct: 231 LSIIPKTGRTHQIRVHALHAGHPIFFDKRY 260
>sp|O31613|YJBO_BACSU Uncharacterized RNA pseudouridine synthase YjbO OS=Bacillus
subtilis (strain 168) GN=yjbO PE=3 SV=1
Length = 283
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 101/226 (44%), Gaps = 28/226 (12%)
Query: 105 GRIQVDEEMVPVSYTVKSS---------QKISHFLHRHEPPVMAWDVSILQKEPDVLTVC 155
G +Q++ E V V Y +K +++S L P+ IL ++ VL +
Sbjct: 25 GDLQINGEHVTVKYVLKEGDLLIVKFPEEQVSETLLAEPVPL-----DILYEDEHVLVIN 79
Query: 156 KPP---SVPV--HPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKAD 210
K P S+P HP G N ++ Q A + V RLDR SG++++A++
Sbjct: 80 KQPYVSSIPSREHPSGSI-ANGIIDHYQTTGVRATVHLVTRLDRDTSGIMLVAKHRFAHS 138
Query: 211 LFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKA 270
+ + G V +RY A V+G + E VD I + + + D G+
Sbjct: 139 ILSSAQKNGLVKRRYAAVVHGRMAQMEGTVDAPIGRHPDSIIERTVTPD--------GQK 190
Query: 271 ACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
A T F N + V + TGRTHQIRVH+ Y G+P+ D LY
Sbjct: 191 AVTHFYVTCANDDMTSVALQLETGRTHQIRVHMSYLGHPLCGDTLY 236
>sp|P59838|RLUD_BLOFL Ribosomal large subunit pseudouridine synthase D OS=Blochmannia
floridanus GN=rluD PE=3 SV=1
Length = 321
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHP-CGQYRKNTVVGILQAEHDLAPLFP----VHRLDRLV 196
++I+ ++ D+L + K ++ VHP G Y+ + +L + + V RLD+
Sbjct: 86 LNIIYEDNDILVINKASNMVVHPGIGHYQGTVLNALLYRYPSILKISKQAGIVQRLDKDT 145
Query: 197 SGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAE 256
+GL+I+A+ S D + + KV+K Y A V G F VV N R A+
Sbjct: 146 TGLMIIAKTVSAYDNLLRSFKLRKVVKEYDAIVYGKFTSNAGVV------NQPMRRHFAK 199
Query: 257 SGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
+ GK+A T ++ + HS V TGRTHQIRVH+ Y +P+ D Y
Sbjct: 200 R--TFMSVHYTGKSAVTYYSVVEEFKAHSRVRINLKTGRTHQIRVHMAYINHPLVGDQKY 257
>sp|Q9K0B0|RLUD_NEIMB Ribosomal large subunit pseudouridine synthase D OS=Neisseria
meningitidis serogroup B (strain MC58) GN=rluD PE=3 SV=1
Length = 374
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 20/206 (9%)
Query: 116 VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPC-GQYRKNTVV 174
+ TV+ S++ F+ P MA D I+ ++ V+ V KP + VHP G + +
Sbjct: 85 ICVTVRPSEENLAFV----PEPMALD--IVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLN 138
Query: 175 GILQAEHDLAPL---FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
G+L +L+ + VHRLD+ SGL+++A+ + +Q++ V + Y A NG
Sbjct: 139 GLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVANG 198
Query: 232 VFP-EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCE 290
+ P +G+ + + + + + G GK A T + THS + C
Sbjct: 199 IVPFDGKIETQIGRDPHNRLKMAVVKFG---------GKPAVTHVKVLERYLTHSYIECS 249
Query: 291 PITGRTHQIRVHLQYTGYPIANDMLY 316
TGRTHQIRVH++ +P+A D +Y
Sbjct: 250 LETGRTHQIRVHMREANHPLAADPVY 275
>sp|Q9KQH0|RLUC_VIBCH Ribosomal large subunit pseudouridine synthase C OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rluC PE=3 SV=1
Length = 315
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 116/266 (43%), Gaps = 31/266 (11%)
Query: 68 EFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQ--- 124
+FI + AG+ I + + K P ++ G ++V+++ V Y +++
Sbjct: 9 QFID-IDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR 67
Query: 125 --KISHFLHRHEPP--------VMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV 174
++ + +EP V + I+ ++ +L + KP VH
Sbjct: 68 VPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLH----F 123
Query: 175 GILQAEHDLAP----LFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVN 230
G ++A L P L VHR+DR SG+L++A+ S + Q V K Y A V
Sbjct: 124 GAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVM 183
Query: 231 GVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCE 290
G + +VV+ + N +S+ GK + T+F + ++V
Sbjct: 184 GHWDAECKVVNAPLLKNEV---------NSIVRVNPNGKPSETRFRILEKFAEATLVQAS 234
Query: 291 PITGRTHQIRVHLQYTGYPIANDMLY 316
P+TGRTHQIRVH QY G+PIA D Y
Sbjct: 235 PVTGRTHQIRVHTQYMGHPIAWDDRY 260
>sp|Q8K9E9|RLUD_BUCAP Ribosomal large subunit pseudouridine synthase D OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=rluD PE=3 SV=1
Length = 315
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 13/179 (7%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP----VHRLDRLVS 197
++ + ++ ++L + KPP + VHP + T++ L + P +HRLD+ S
Sbjct: 84 LNTIYEDSNILIINKPPGLVVHPGAGNQDGTILNALLYRYTNISSIPRCGIIHRLDKDTS 143
Query: 198 GLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAES 257
GL+++A+ + ++ K+I++Y + G G V N + +
Sbjct: 144 GLMVIAKTIFSYNKLVTLLKKRKIIRKYQGIIKGNMISGGIV---NYPIMRHPFKRICMT 200
Query: 258 GDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
DSLG K + T + I+ H+ V TGRTHQIRVH+ + GYP+ D LY
Sbjct: 201 TDSLG------KKSITHYKIINRFKFHTHVSFRLETGRTHQIRVHMLHIGYPLLGDPLY 253
>sp|Q9JVB6|RLUD_NEIMA Ribosomal large subunit pseudouridine synthase D OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=rluD PE=3 SV=1
Length = 374
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 20/206 (9%)
Query: 116 VSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPC-GQYRKNTVV 174
+ TV+ S++ F+ P MA D I+ ++ V+ V KP + VHP G + +
Sbjct: 85 IRVTVRPSEENLAFV----PEPMALD--IVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLN 138
Query: 175 GILQAEHDLAPL---FPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNG 231
G+L +L+ + VHRLD+ SGL+++A+ + Q++ V + Y A NG
Sbjct: 139 GLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVWQLQERTVKRIYRAVANG 198
Query: 232 VFP-EGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCE 290
+ P +G+ + + + + + G GK A T + HS + C
Sbjct: 199 IVPFDGKIETQIGRDPHNRLKMAVVKFG---------GKPAVTHVKVLERYLAHSYIECS 249
Query: 291 PITGRTHQIRVHLQYTGYPIANDMLY 316
TGRTHQIRVH++ +P+A D +Y
Sbjct: 250 LETGRTHQIRVHMREANHPLAGDPVY 275
>sp|O66114|Y505_ZYMMO Uncharacterized RNA pseudouridine synthase ZMO0505 OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=ZMO0505 PE=3 SV=2
Length = 219
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 88/193 (45%), Gaps = 30/193 (15%)
Query: 136 PVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPL------FP- 188
P++A V + E + + KP +PV + G L E+ LA L +P
Sbjct: 2 PILAKRVLFIDAE--AMIIDKPAGLPV-------TSVRDGSLSLENYLASLCFGFKRWPS 52
Query: 189 -VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD---VNI 244
VHRLDR SG L+LARN + G+V K Y A + GV + E ++D + I
Sbjct: 53 IVHRLDRDTSGCLLLARNPKMHRRLSEAFSQGQVKKCYWAILEGVPEKNEGIIDLPLLKI 112
Query: 245 NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
+ S R A+ KGK A T + ++ N S+V P TGRTHQ+RVH
Sbjct: 113 SSPKSGWRIVADD---------KGKRAVTHWEILAKNKGRSLVAFRPETGRTHQLRVHAA 163
Query: 305 Y-TGYPIANDMLY 316
G PI D Y
Sbjct: 164 TGLGLPIVGDPFY 176
>sp|Q5M721|PUS5_ARATH RNA pseudourine synthase 5 OS=Arabidopsis thaliana GN=At3g52260
PE=2 SV=2
Length = 369
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 121/269 (44%), Gaps = 36/269 (13%)
Query: 81 TIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMVPVSYTV-KSSQKISHFLHRHEPPVM 138
T+ + + ++K P ++ ++ G+IQ+D E+V T+ +S K+ + + P
Sbjct: 34 TVSEFYFTKYKSSAPLLGWIQRIQNGQIQIDGEVVKDPNTLLRSGSKLVYSRLPWKEPDT 93
Query: 139 AWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQ----------AEHDLAPLFP 188
+ + +L ++ D++ + KP + V P G +++ TV+ LQ + P
Sbjct: 94 PYSLEVLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVP 153
Query: 189 VHRLDRLVSGLLILARNA-SKADL---------------FRQQIEAG-KVIKRYIARVNG 231
VHRL R SG+L+ A+ +K L Q+ G K+ K Y A +G
Sbjct: 154 VHRLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLVGSGNLDQECGTGRKLSKIYRALADG 213
Query: 232 VFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTH--SIVLC 289
+ E E V+ I G + L +GK A +K + + S+V
Sbjct: 214 IVEEDEVVIKQPIGVVRYPGVAQG-----LYVASPEGKPAFSKVFVLERDREKNCSLVKV 268
Query: 290 EPITGRTHQIRVHLQYTGYPIANDMLYLC 318
E +GR HQIR+HL Y G+P+ D LY+
Sbjct: 269 EIQSGRPHQIRIHLAYMGHPLVGDPLYVA 297
>sp|Q8PHN2|RLUD_XANAC Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=rluD PE=3 SV=1
Length = 331
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 104/252 (41%), Gaps = 18/252 (7%)
Query: 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFL-- 130
V + AG+ + AE F +K G +D EM T++ + + +
Sbjct: 18 VPDNAAGRRFDAVLAELFPEFSRSRLSEWIKSGDALLDGEMARPRDTLRGGESVQVQVVL 77
Query: 131 --HRHEPPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFP 188
H P +S+L ++ VL + KP + VHP T+V L P
Sbjct: 78 ETQTHAAP-QDIPLSVLYEDEQVLVIDKPAGLVVHPGAGNPDRTLVNALLFRDPALASVP 136
Query: 189 ----VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNI 244
VHRLD+ SG++++AR +Q+ A +V ++Y+A V G G + I
Sbjct: 137 RAGVVHRLDKDTSGVMVVARTVQAQTALVEQLSAREVHRQYLAVVVGALVSG-GTANAPI 195
Query: 245 NYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304
+ + A D G+ A T + H+ + C TGRTHQIRVH+
Sbjct: 196 DRHPRDRLKMAVRDD--------GRDAVTHYRLRERFRAHTALECRLETGRTHQIRVHMA 247
Query: 305 YTGYPIANDMLY 316
+ PI D LY
Sbjct: 248 HLKSPIVGDPLY 259
>sp|Q8K9J8|RLUC_BUCAP Ribosomal large subunit pseudouridine synthase C OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=rluC PE=3 SV=1
Length = 314
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 115/272 (42%), Gaps = 46/272 (16%)
Query: 70 ISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKIS-- 127
I ++ + I + ++ K P ++ G+I+++++ + Y +K K+
Sbjct: 10 IIYINEDMINQRIDNFLQKKLKNVPRSMIYRIIRTGKIRINKKRIKPDYKLKIGDKLRIP 69
Query: 128 --HFLHRHEPPVMAWDV------SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQA 179
L + ++ + +IL ++ +L + KP + VH +G+++
Sbjct: 70 PIKILCEKKSSLLTTEYKKNLLNNILYEDNYLLIINKPSGIAVHGGSGIN----LGVIEY 125
Query: 180 EHDLAPLFP----VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235
+ PL VHR+DR SG+L+LA+ +QI KV K+YIA V+G++P
Sbjct: 126 FRKIRPLEKFLELVHRIDRDTSGVLMLAKKRRSLLSLHKQIREKKVQKKYIALVHGLWPL 185
Query: 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLK-----------GKAACTKFTRISTNGTH 284
S + + L T LK GK A T F
Sbjct: 186 -----------------SLRKVSEPLLKTHLKNKQRKILINKEGKPAETYFKIKKQYLFT 228
Query: 285 SIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
++V P TGRTHQIRVH + G+PI D Y
Sbjct: 229 TLVSITPKTGRTHQIRVHTLHAGHPILFDKRY 260
>sp|P43930|Y042_HAEIN Uncharacterized RNA pseudouridine synthase HI_0042 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=HI_0042 PE=3 SV=1
Length = 224
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 11/176 (6%)
Query: 141 DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLL 200
++ ++ + D + + K + VH + + ++ + ++ ++ VHRLD++ SGLL
Sbjct: 2 EIEVVYQHSDFIIINKSEGISVHK--DQEEQGLTELVAKQLNVPKVWLVHRLDKVTSGLL 59
Query: 201 ILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDS 260
ILA NA A F + K+ K Y+A N P+ +Q + + + R A
Sbjct: 60 ILALNAESAAEFSRLFSEHKIHKTYLALSNQK-PKKKQGLIIG---DMKKAREGAWKLCQ 115
Query: 261 LGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
D P A T+F +S + + +P TG+THQ+RV ++ G PI D LY
Sbjct: 116 TKDNP-----AITRFESVSCEPNLRLFILKPQTGKTHQLRVAMKSLGSPILGDGLY 166
>sp|P54604|YHCT_BACSU Uncharacterized RNA pseudouridine synthase YhcT OS=Bacillus
subtilis (strain 168) GN=yhcT PE=3 SV=2
Length = 302
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 20/240 (8%)
Query: 106 RIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMA---WDVSILQKEPDVLTVCKPPSVPV 162
+I+V+ E V + VK ++ L E + ++ IL ++ +L + KP +
Sbjct: 44 QIKVNHESVLNNMIVKKGDRVFIDLQESEASSVIPEYGELDILFEDNHMLIINKPAGIAT 103
Query: 163 HPCGQYRKNTVVGIL----QAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEA 218
HP + T+ ++ Q + + VHRLD+ SG ++ A++ + QQ+E
Sbjct: 104 HPNEDGQTGTLANLIAYHYQINGETCKVRHVHRLDQDTSGAIVFAKHRLAHAILDQQLEK 163
Query: 219 GKVIKRYIARVNGVFPEGEQVVDVNINYNASA-GRSTAESGDSLGDTPLKGKAACTKFTR 277
+ + Y A G + ++ I + S R G G+ A T F
Sbjct: 164 KTLKRTYTAIAEGKLRTKKGTINSPIGRDRSHPTRRRVSPG---------GQTAVTHFKV 214
Query: 278 ISTNGTH--SIVLCEPITGRTHQIRVHLQYTGYPIANDMLY-LCEHVTHREGMSADRAAA 334
+++N S+V E TGRTHQIRVHL G+P+ D LY + +R+ + A++ A
Sbjct: 215 MASNAKERLSLVELELETGRTHQIRVHLASLGHPLTGDSLYGGGSKLLNRQALHANKVQA 274
>sp|P33640|RLUD_PSEAE Ribosomal large subunit pseudouridine synthase D OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rluD PE=3 SV=2
Length = 320
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 22/240 (9%)
Query: 85 LFAEEFKGRPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPPVMAWDVS 143
LF E + R + +K GR+ VD ++ P +Q + + +A D+
Sbjct: 27 LFPEHSRSRLAGW----IKDGRLTVDGAVLRPRDIVHSGAQLVLEAEQEAQGEWLAQDIE 82
Query: 144 --ILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL---FPVHRLDRLVS 197
I+ ++ +L + KP + VHP ++ T++ +L D+A + VHRLD+ +
Sbjct: 83 LEIVYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYHVPDIANVPRAGIVHRLDKDTT 142
Query: 198 GLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAES 257
GL+++A+ Q++A V + Y A V GV G + +A GR +
Sbjct: 143 GLMVVAKTLEAHTKLVAQLQARSVSRIYEAIVIGVITSGGTI-------DAPIGRHGVQR 195
Query: 258 GD-SLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
++ D GK A + + + H+ + TGRTHQIRVH+ + GYP+ D +Y
Sbjct: 196 QKMAVVDA---GKVAVSHYRVLERFRAHTHTRVKLETGRTHQIRVHMSHIGYPLVGDPVY 252
>sp|Q87LD3|RLUA_VIBPA Ribosomal large subunit pseudouridine synthase A OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluA PE=3 SV=1
Length = 250
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 83/197 (42%), Gaps = 28/197 (14%)
Query: 135 PPVMAWDVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHD-----LAPLFP- 188
PP W I+ ++ +L V KP + +V G L HD L +P
Sbjct: 8 PPTDPW-TDIVFEDDHILAVNKPSGL----------LSVPGRLAEHHDSMWSRLQEEYPD 56
Query: 189 ---VHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNIN 245
VHRLD SGL++LA+N ++Q + K Y ARV G + E +D+ +
Sbjct: 57 IQVVHRLDMSTSGLMVLAKNKRAESALKKQFQFRLTHKIYYARVWGHVEQEEGEIDLPLI 116
Query: 246 Y---NASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVH 302
N + E G P K K +IV PITGR+HQ+RVH
Sbjct: 117 CDWPNRPLQKVCFEDG-----KPSKTLFQVAKREEQEDGTKTTIVRLLPITGRSHQLRVH 171
Query: 303 LQYTGYPIANDMLYLCE 319
+Q G+PI D Y E
Sbjct: 172 MQALGHPIVGDEFYATE 188
>sp|P57481|RLUD_BUCAI Ribosomal large subunit pseudouridine synthase D OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=rluD PE=3 SV=1
Length = 312
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 15/180 (8%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH----DLAPLFPVHRLDRLVS 197
+ I+ ++ D+L + KP + VHP + T++ L + DL VHRLD+ S
Sbjct: 84 LDIVYEDSDILIINKPAGLVVHPGSGNKSGTILNALLYHYKNSKDLPRAGIVHRLDKDTS 143
Query: 198 GLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVD-VNINYNASAGRSTAE 256
GL+++A+N + ++ K+I+ Y V+G G + + +YN R T
Sbjct: 144 GLMVIAKNIFSYNHLLLLLKEKKIIREYEGIVHGKMIAGGTINKPIMRHYN----RRTCM 199
Query: 257 SGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
LG K + T + +S H+ + TGRTHQIRVH+ + YP+ D Y
Sbjct: 200 MVHHLG------KPSVTHYKVLSRFKFHTHIAIRLETGRTHQIRVHMLHIKYPLVGDPCY 253
>sp|Q8P682|RLUD_XANCP Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=rluD PE=3 SV=1
Length = 331
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVV-GILQAEHDLAPL---FPVHRLDRLVS 197
+++L ++ VL + KP + VHP T+V +L + +LA + VHRLD+ S
Sbjct: 90 LNVLYEDDHVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPNLAAVPRAGVVHRLDKDTS 149
Query: 198 GLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAES 257
G++++AR +Q+ A V ++Y+A V G G D I+ + A
Sbjct: 150 GVMVVARTLQAQTALVEQLSARDVHRQYLAVVVGALVSG-GTADAPIDRHPRDRLKMAVR 208
Query: 258 GDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316
D G+ A T + H+ + C TGRTHQIRVH+ + PI D LY
Sbjct: 209 DD--------GRDAVTHYRLRERFRAHTALECRLETGRTHQIRVHMAHLKSPIVGDPLY 259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,025,711
Number of Sequences: 539616
Number of extensions: 7070786
Number of successful extensions: 97627
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 40626
Number of HSP's gapped (non-prelim): 38757
length of query: 399
length of database: 191,569,459
effective HSP length: 120
effective length of query: 279
effective length of database: 126,815,539
effective search space: 35381535381
effective search space used: 35381535381
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)