Query 015839
Match_columns 399
No_of_seqs 429 out of 1954
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 03:25:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9f_A Ribosomal large subunit 100.0 1.2E-54 4E-59 428.5 3.5 262 73-343 10-291 (325)
2 1ksk_A Ribosomal small subunit 100.0 3.8E-47 1.3E-51 358.4 -2.8 206 78-319 2-209 (234)
3 2i82_A Ribosomal large subunit 100.0 6.4E-46 2.2E-50 346.3 2.7 193 142-343 12-206 (217)
4 1vio_A Ribosomal small subunit 100.0 7.2E-46 2.4E-50 351.6 -4.0 203 79-317 2-206 (243)
5 1v9k_A Ribosomal large subunit 100.0 3.2E-44 1.1E-48 337.2 3.6 193 143-343 3-204 (228)
6 3dh3_A Ribosomal large subunit 100.0 3.9E-43 1.3E-47 340.1 -4.6 205 77-319 4-209 (290)
7 2oml_A Ribosomal large subunit 100.0 5.7E-41 2E-45 306.4 -4.0 167 142-320 4-173 (189)
8 2olw_A Ribosomal large subunit 100.0 7.9E-40 2.7E-44 305.1 -2.5 167 141-320 31-201 (217)
9 2gml_A Ribosomal large subunit 100.0 2.1E-33 7.2E-38 263.6 -3.4 141 148-317 13-154 (237)
10 2k6p_A Uncharacterized protein 98.6 4E-09 1.4E-13 84.3 -1.1 52 80-131 1-52 (92)
11 1dm9_A Hypothetical 15.5 KD pr 98.2 5.7E-08 1.9E-12 83.1 -2.8 54 77-130 6-59 (133)
12 1p9k_A ORF, hypothetical prote 98.1 1.7E-07 5.9E-12 72.7 -2.6 51 78-129 19-71 (79)
13 2vqe_D 30S ribosomal protein S 97.8 3E-07 1E-11 84.5 -6.0 91 78-179 97-191 (209)
14 1c05_A Ribosomal protein S4 de 97.8 8.6E-07 3E-11 78.0 -3.2 93 77-179 48-141 (159)
15 2cqj_A BRMS2, U3 small nucleol 97.6 3E-06 1E-10 64.4 -2.3 48 79-127 7-58 (71)
16 3r8n_D 30S ribosomal protein S 97.3 8E-06 2.7E-10 74.4 -3.6 52 78-129 93-145 (205)
17 3bbn_D Ribosomal protein S4; s 97.2 2.7E-05 9.2E-10 70.8 -2.0 51 79-129 88-139 (201)
18 2xzm_D Ribosomal protein S4 co 97.1 5E-05 1.7E-09 68.0 -1.0 52 77-129 104-157 (181)
19 3j20_D 30S ribosomal protein S 97.1 3E-05 1E-09 69.2 -2.8 49 79-128 102-154 (180)
20 3hp7_A Hemolysin, putative; st 97.0 5.5E-05 1.9E-09 72.8 -1.6 52 78-129 5-59 (291)
21 3iz6_C 40S ribosomal protein S 96.8 3.6E-05 1.2E-09 69.4 -4.8 53 78-131 107-161 (195)
22 3u5c_J 40S ribosomal protein S 96.4 0.00022 7.4E-09 64.4 -2.5 49 78-127 105-157 (197)
23 1k8w_A TRNA pseudouridine synt 96.1 0.00049 1.7E-08 66.8 -1.7 70 149-230 25-94 (327)
24 1r3e_A TRNA pseudouridine synt 96.1 0.00043 1.5E-08 66.7 -2.4 70 149-230 3-72 (309)
25 2aus_C Pseudouridine synthase; 96.0 0.00055 1.9E-08 67.0 -2.4 73 146-230 43-115 (334)
26 1sgv_A TRNA pseudouridine synt 95.9 0.00057 1.9E-08 66.1 -2.4 71 148-230 5-75 (316)
27 2apo_A Probable tRNA pseudouri 95.7 0.00069 2.3E-08 66.7 -2.8 73 146-230 63-135 (357)
28 3u28_A H/ACA ribonucleoprotein 95.4 0.0015 5.2E-08 65.0 -1.7 73 146-230 56-128 (400)
29 3kbg_A 30S ribosomal protein S 93.9 0.013 4.3E-07 53.4 0.6 68 78-154 6-75 (213)
30 3j20_E 30S ribosomal protein S 93.0 0.017 5.8E-07 53.6 -0.1 52 78-129 41-94 (243)
31 1jil_A Tyrrs, tyrosyl-tRNA syn 82.4 0.26 8.8E-06 49.5 0.0 47 79-126 352-400 (420)
32 3iz6_D 40S ribosomal protein S 79.0 0.35 1.2E-05 45.2 -0.3 71 78-155 40-112 (265)
33 2xzm_W 40S ribosomal protein S 76.4 0.64 2.2E-05 43.4 0.6 72 78-156 40-115 (260)
34 3u5c_E RP5, S7, YS6, 40S ribos 74.5 0.37 1.3E-05 45.0 -1.5 70 78-154 40-111 (261)
35 2hj1_A Hypothetical protein; s 66.6 0.45 1.6E-05 37.8 -2.4 51 78-130 34-84 (97)
36 1wv3_A Similar to DNA segregat 65.8 3.8 0.00013 37.6 3.3 41 103-154 133-174 (238)
37 2ts1_A Tyrosyl-tRNA synthetase 62.2 1.6 5.5E-05 43.6 0.0 46 79-125 351-398 (419)
38 1rws_A Hypothetical protein PF 60.5 2.6 8.8E-05 31.6 0.9 43 78-129 29-71 (77)
39 2q5w_D Molybdopterin convertin 59.8 3.5 0.00012 30.4 1.5 24 106-129 48-71 (77)
40 2ktl_A Tyrosyl-tRNA synthetase 52.9 1.2 4E-05 38.9 -2.5 35 79-114 49-84 (164)
41 3po0_A Small archaeal modifier 52.7 3.4 0.00012 31.5 0.4 24 106-129 60-83 (89)
42 3hvz_A Uncharacterized protein 50.6 4.5 0.00015 30.6 0.8 23 107-129 44-66 (78)
43 2jan_A Tyrosyl-tRNA synthetase 47.9 2.2 7.5E-05 42.9 -1.8 44 81-125 357-402 (432)
44 1fm0_D Molybdopterin convertin 45.9 5.4 0.00018 29.6 0.5 24 106-129 52-75 (81)
45 2cu3_A Unknown function protei 44.5 7.1 0.00024 27.9 1.0 43 78-129 12-58 (64)
46 1vjk_A Molybdopterin convertin 44.5 5 0.00017 31.3 0.2 24 106-129 69-92 (98)
47 1h3f_A Tyrosyl-tRNA synthetase 41.5 3.5 0.00012 41.4 -1.5 45 79-124 368-414 (432)
48 3rpf_C Molybdopterin convertin 39.5 7.7 0.00026 28.5 0.5 49 78-129 19-68 (74)
49 3fm8_A Kinesin-like protein KI 38.3 13 0.00045 30.5 1.9 23 106-128 91-113 (124)
50 1f0z_A THis protein; ubiquitin 38.1 8 0.00027 27.7 0.4 43 78-129 14-60 (66)
51 1ryj_A Unknown; beta/alpha pro 37.8 7.5 0.00026 28.3 0.2 43 78-129 22-64 (70)
52 2k5p_A THis protein, thiamine- 37.5 12 0.0004 28.1 1.3 42 79-129 17-63 (78)
53 2l52_A Methanosarcina acetivor 37.3 5.8 0.0002 31.1 -0.5 24 106-129 66-93 (99)
54 2kmm_A Guanosine-3',5'-BIS(dip 35.7 9.4 0.00032 27.5 0.5 45 78-129 17-61 (73)
55 3uv0_A Mutator 2, isoform B; F 34.3 21 0.00072 28.3 2.3 25 102-127 59-83 (102)
56 1tyg_B YJBS; alpha beta barrel 34.3 11 0.00037 29.1 0.6 41 80-129 37-81 (87)
57 4egx_A Kinesin-like protein KI 33.8 15 0.0005 32.3 1.5 24 105-128 140-163 (184)
58 3dwg_C 9.5 kDa culture filtrat 33.4 10 0.00035 29.0 0.4 24 106-129 60-87 (93)
59 3kt9_A Aprataxin; FHA domain, 32.9 29 0.001 27.4 3.0 39 91-129 38-90 (102)
60 1r21_A Antigen KI-67; beta san 31.7 28 0.00095 28.2 2.8 38 91-128 50-98 (128)
61 4ejq_A Kinesin-like protein KI 31.2 17 0.0006 30.7 1.5 23 106-128 111-133 (154)
62 2kl0_A Putative thiamin biosyn 29.8 12 0.00043 27.6 0.3 43 78-129 13-59 (73)
63 3gqs_A Adenylate cyclase-like 29.5 31 0.0011 26.9 2.6 22 107-128 71-92 (106)
64 1wln_A Afadin; beta sandwich, 28.6 30 0.001 27.7 2.5 23 106-128 81-103 (120)
65 2qjl_A URM1, ubiquitin-related 27.5 13 0.00045 28.9 0.1 24 106-129 66-93 (99)
66 2g1e_A Hypothetical protein TA 26.8 14 0.00048 27.8 0.1 24 106-129 57-84 (90)
67 2l32_A Small archaeal modifier 25.6 9.8 0.00034 28.3 -1.0 42 78-129 19-60 (74)
68 1wgk_A Riken cDNA 2900073H19 p 25.0 9.5 0.00033 30.9 -1.2 48 82-129 48-102 (114)
69 1gxc_A CHK2, CDS1, serine/thre 24.7 51 0.0017 27.5 3.3 22 107-128 105-128 (149)
70 2eki_A DRG 1, developmentally- 21.3 35 0.0012 26.6 1.4 51 79-129 35-85 (93)
71 2xt9_B Putative signal transdu 21.2 73 0.0025 25.1 3.4 37 91-128 48-95 (115)
72 3po8_A RV0020C protein, putati 20.3 65 0.0022 24.6 2.9 21 107-128 67-87 (100)
73 1dmz_A Protein (protein kinase 20.1 87 0.003 26.4 3.8 23 107-129 85-109 (158)
74 2vo8_A EXO-alpha-sialidase; hy 20.0 53 0.0018 27.4 2.3 20 296-315 76-95 (143)
No 1
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=100.00 E-value=1.2e-54 Score=428.47 Aligned_cols=262 Identities=21% Similarity=0.249 Sum_probs=163.2
Q ss_pred ccccccCcchhhhhhhhhcCCccceeeeeEEeeeeEecCee-eeeeEEEecccccccccccCCCC-ee--eccceeeccC
Q 015839 73 VKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEM-VPVSYTVKSSQKISHFLHRHEPP-VM--AWDVSILQKE 148 (399)
Q Consensus 73 v~~~~~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~-v~~~~~v~~gD~I~~~~~~~e~p-v~--~~~~~IlyEd 148 (399)
+...+.++||++||++.+..+||+.++++|++|+|+|||++ +.++++|++||.|.+.....+++ .. ..++.|+|||
T Consensus 10 v~~~~~g~RLd~~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~ilyed 89 (325)
T 1v9f_A 10 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYED 89 (325)
T ss_dssp ------------------------------------------------------------------CCCCCCCCCEEEEC
T ss_pred ECCccCCchHHHHHHhhccccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEeccccccccCCcccCCCeEEEEC
Confidence 56677899999999998768999999999999999999998 58999999999999876543211 11 1246799999
Q ss_pred CCeEEeecCCCcccccCcccccceEEEEeecc----cCCCCcccchhhhhhhhheeeeecccchhHHHHHHHhhchhhhh
Q 015839 149 PDVLTVCKPPSVPVHPCGQYRKNTVVGILQAE----HDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKR 224 (399)
Q Consensus 149 ~~~ivvnKP~Gl~v~p~~~~~~~tv~~~L~~~----~~~~~l~pVhRLDr~TSGLLL~akd~~~a~~L~~~~~~~~v~K~ 224 (399)
++|||||||+||+|||++.....|+++.|... ....++++|||||++||||||||||+++++.|+++|+++.+.|+
T Consensus 90 ~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~ 169 (325)
T 1v9f_A 90 EDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITRE 169 (325)
T ss_dssp SSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEE
T ss_pred CCEEEEECCCCCeEecCCCCCCccHHHHHHHHHHhcCCCCceeeecCCCCCCeeEEEEEcCHHHHHHHHHHHHcCCeeEE
Confidence 99999999999999998877677887766321 12246899999999999999999999999999999999999999
Q ss_pred hheeeccccCCCceEEeeeeeecccCCccccccCCCCCCCCCCCcccccceEEeecCCeeeEEEeecccCceeEEEEEee
Q 015839 225 YIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQ 304 (399)
Q Consensus 225 YlA~V~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~~~~slV~~~l~TGRtHQIR~hla 304 (399)
|+|+|.|.++. ++.|+.+|..+........ + ..+|+.|.|.|++++...+.|+|+|+|+||||||||+||+
T Consensus 170 Y~a~v~G~~~~-~g~i~~~i~~~~~~~~~~~-v-------~~~gk~a~t~~~vl~~~~~~slv~~~l~TGR~HQIRvhla 240 (325)
T 1v9f_A 170 YEAVAIGHMTA-GGTVDEPISRHPTKRTHMA-V-------HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 240 (325)
T ss_dssp EEEEEESCCCC-CEEEECCEEECSSCTTCEE-E-------CTTSBCCEEEEEEEEECSSEEEEEEEESCCCTTHHHHHHH
T ss_pred EEEEEeCCCCC-CCEEeeeeeECCCCCEEEE-E-------CCCCeeEEEEEEEeEEcCCeEEEEEEECCCCcHHHHHHHH
Confidence 99999999987 7899999987654322221 1 1378999999999998878999999999999999999999
Q ss_pred eeCcccccCceeeccccc------------cccCCCccccccccccCCCCC
Q 015839 305 YTGYPIANDMLYLCEHVT------------HREGMSADRAAAYSHHSPPPV 343 (399)
Q Consensus 305 ~lG~PIvGD~~Yg~~~~~------------~~~~~~~~~~~~~~~~lp~~~ 343 (399)
++||||+||.+||+.... ......++|+..+.|.+|.+-
T Consensus 241 ~lG~PI~GD~~Yg~~~~~~~~~~~~~~~~~~~~~r~~LHA~~L~f~hP~~~ 291 (325)
T 1v9f_A 241 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 291 (325)
T ss_dssp HTTCCBTTCTTTTCCCCCCTTCCHHHHHHHHHCCSCSEEEEEEEEECTTTC
T ss_pred hCCCceeCChhhCCccccccccchhhhhhccCCcChhhheeeeEeeCCCCC
Confidence 999999999999975210 012456888999999998763
No 2
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=100.00 E-value=3.8e-47 Score=358.35 Aligned_cols=206 Identities=16% Similarity=0.170 Sum_probs=169.9
Q ss_pred cCcchhhhhhhhhcCCccceeeeeEEeeeeEecCeeee-eeEEEecccccccccccCCCCeeeccceeecc-CCCeEEee
Q 015839 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQK-EPDVLTVC 155 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v~-~~~~v~~gD~I~~~~~~~e~pv~~~~~~IlyE-d~~~ivvn 155 (399)
+++||++||++. +.+||+.++++|++|+|+|||+++. ++++|++||.|.+. +..|+|| |++|+|||
T Consensus 2 ~~~RLd~~L~~~-~~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~-----------~~~i~~e~d~~~lvvn 69 (234)
T 1ksk_A 2 SHMRLDKFIAQQ-LGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYD-----------GNPLAQQHGPRYFMLN 69 (234)
T ss_dssp CCEEHHHHHHHH-HTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEET-----------TEEECCCCCCCEEEEE
T ss_pred CcccHHHHHHHc-CCCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEe-----------CeEeecCCCCEEEEEE
Confidence 478999999987 5899999999999999999999995 89999999999864 2358999 99999999
Q ss_pred cCCCcccccCcccccceEEEEeecccCCCCcccchhhhhhhhheeeeecccchhHHHHHHHhhchhhhhhheeeccccCC
Q 015839 156 KPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235 (399)
Q Consensus 156 KP~Gl~v~p~~~~~~~tv~~~L~~~~~~~~l~pVhRLDr~TSGLLL~akd~~~a~~L~~~~~~~~v~K~YlA~V~G~~~~ 235 (399)
||+|++|||++.. .+||+++|..... ..+++|||||++||||||||||++++++|. .+++.+.|+|+|+|.|.++.
T Consensus 70 KP~G~~~~~~~~~-~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~~~~l~--~~~~~v~K~Y~a~v~g~~~~ 145 (234)
T 1ksk_A 70 KPQGYVCSTDDPD-HPTVLYFLDEPVA-WKLHAAGRLDIDTTGLVLMTDDGQWSHRIT--SPRHHCEKTYLVTLESPVAD 145 (234)
T ss_dssp ECTTCBSSSSCSS-SCBGGGGCCCTTG-GGCEESSCCCTTCEEEEEEESCHHHHHHHH--CTTSCCCEEEEEEESSCCCT
T ss_pred CCCCCEeCCCCCC-CCcHHHHhhhhhc-CCeeEcCCCCCCCeeEEEEEcCHHHHHHHh--CCCCCCCeEEEEEEccCCCH
Confidence 9999999998874 7799888876432 368899999999999999999999999998 47889999999999999987
Q ss_pred CceEEeeeeeecccCCccccccCCCCCCCCCCCcccccceEEeecCCeeeEEEeecccCceeEEEEEeeeeCcccccCce
Q 015839 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315 (399)
Q Consensus 236 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~~~~slV~~~l~TGRtHQIR~hla~lG~PIvGD~~ 315 (399)
+.+ +.+. .+. .+.. ....+++|. |++++ .|+|+|+|+||||||||+||+++||||+||.+
T Consensus 146 ~~i--~~~~-----~g~---~~~~----~~~~~~~a~--~~~~~----~s~~~~~l~tGR~HQIR~h~~~lG~pi~gd~r 205 (234)
T 1ksk_A 146 DTA--EQFA-----KGV---QLHN----EKDLTKPAV--LEVIT----PTQVRLTISEGRYHQVKRMFAAVGNHVVELHR 205 (234)
T ss_dssp THH--HHHH-----HCC---CCTT----CSSCCCCCE--EEEEE----TTEEEEEESCCCTTHHHHHHHHTTCCEEEEEE
T ss_pred HHH--HHHH-----CCe---EECC----CCcccceEE--EEEeC----CeEEEEEEccCCCHHHHHHHHHcCCeEeeeEE
Confidence 632 2110 111 0100 011345554 67774 68999999999999999999999999999999
Q ss_pred eecc
Q 015839 316 YLCE 319 (399)
Q Consensus 316 Yg~~ 319 (399)
|+..
T Consensus 206 y~~g 209 (234)
T 1ksk_A 206 ERIG 209 (234)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9854
No 3
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=100.00 E-value=6.4e-46 Score=346.30 Aligned_cols=193 Identities=25% Similarity=0.335 Sum_probs=162.2
Q ss_pred ceeeccCCCeEEeecCCCcccccCcc-cccceEEEEeecccCCCCcccchhhhhhhhheeeeecccchhHHHHHHHhhch
Q 015839 142 VSILQKEPDVLTVCKPPSVPVHPCGQ-YRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220 (399)
Q Consensus 142 ~~IlyEd~~~ivvnKP~Gl~v~p~~~-~~~~tv~~~L~~~~~~~~l~pVhRLDr~TSGLLL~akd~~~a~~L~~~~~~~~ 220 (399)
++|+|||++|||||||+|++||++.. ...+||++.|.... ..+++|||||++||||||||||++++++|+++|+++.
T Consensus 12 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~--~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~f~~~~ 89 (217)
T 2i82_A 12 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--PQAESVHRLDMATSGVIVVALTKAAERELKRQFRERE 89 (217)
T ss_dssp CCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHC--TTCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTC
T ss_pred ceEEEECCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHC--CCCceeecCCCCCeEEEEEEeCHHHHHHHHHHHHhCC
Confidence 68999999999999999999998654 45678888776543 4578999999999999999999999999999999999
Q ss_pred hhhhhheeeccccCCCceEEeeeeeecccCCccccccCCCCCCCCCCCcccccceEEeecCCe-eeEEEeecccCceeEE
Q 015839 221 VIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT-HSIVLCEPITGRTHQI 299 (399)
Q Consensus 221 v~K~YlA~V~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~~~-~slV~~~l~TGRtHQI 299 (399)
++|+|+|+|.|.++.+++.|+.+|..+........ + ..++++.|.|.|++++..++ .|+|+|+|+|||||||
T Consensus 90 v~K~Y~a~v~G~~~~~~g~i~~~l~~~~~~~~~~~-v------~~~~gk~a~t~~~vl~~~~~~~slv~~~l~TGR~HQI 162 (217)
T 2i82_A 90 PKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK-V------CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQL 162 (217)
T ss_dssp SEEEEEEEEESCCSSSEEEEECCEEECGGGTTCEE-E------CTTTCBCCEEEEEEEEEETTTEEEEEEEESSCCTTHH
T ss_pred eeEEEEEEEecccCCCCcEEecceeecCCCCcEEE-E------eCCCCcEEEEEEEEEEECCCCeEEEEEEECCCCcHHH
Confidence 99999999999999888899999876543221111 1 12478999999999987665 8999999999999999
Q ss_pred EEEeeeeCcccccCceeeccccccccCCCccccccccccCCCCC
Q 015839 300 RVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHHSPPPV 343 (399)
Q Consensus 300 R~hla~lG~PIvGD~~Yg~~~~~~~~~~~~~~~~~~~~~lp~~~ 343 (399)
|+||+++||||+||.+||+..........++++..+.|.+|.+.
T Consensus 163 R~hla~lG~PIvGD~~Yg~~~~~~~~~r~~LHa~~l~f~hP~~~ 206 (217)
T 2i82_A 163 RVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYG 206 (217)
T ss_dssp HHHHHHTTCCBTTCTTTSCHHHHHTCSSCCEEEEEEEEECTTTC
T ss_pred HHHHHHCCCcEECccccCCccccCCCCCceeeeeEeEEcCCCCC
Confidence 99999999999999999975432123467788889999888763
No 4
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=100.00 E-value=7.2e-46 Score=351.61 Aligned_cols=203 Identities=16% Similarity=0.133 Sum_probs=165.4
Q ss_pred CcchhhhhhhhhcCCccceeeeeEEeeeeEecCeee-eeeEEEecccccccccccCCCCeeeccceeeccCCC-eEEeec
Q 015839 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPD-VLTVCK 156 (399)
Q Consensus 79 g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~~~~~e~pv~~~~~~IlyEd~~-~ivvnK 156 (399)
.+||++||++. +.+||+.++++|++|+|+|||+++ +++++|++||.|.+. +..|+|||++ |+||||
T Consensus 2 ~~RLd~~L~~~-~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~-----------~~~i~~ed~~~~lvvnK 69 (243)
T 1vio_A 2 SLRLDKFIAEN-VGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFE-----------DELLTWIEEGQYFMLNK 69 (243)
T ss_dssp CEEHHHHHHHH-HTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEET-----------TEECCSSCCCCEEEEEE
T ss_pred CccHHHHHHHc-CCCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEe-----------ccccccCCCCEEEEEEC
Confidence 37999999987 589999999999999999999999 689999999988753 3468999999 999999
Q ss_pred CCCcccccCcccccceEEEEeecccCCCCcccchhhhhhhhheeeeecccchhHHHHHHHhhchhhhhhheeeccccCCC
Q 015839 157 PPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEG 236 (399)
Q Consensus 157 P~Gl~v~p~~~~~~~tv~~~L~~~~~~~~l~pVhRLDr~TSGLLL~akd~~~a~~L~~~~~~~~v~K~YlA~V~G~~~~~ 236 (399)
|+|++|||++.. .+||+++|..... ..+++|||||++||||||||+|+++++++. .+++.+.|+|+|+|.|.++.+
T Consensus 70 P~G~~~~~~~~~-~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~a~~l~--~~~~~v~K~Y~a~v~g~~~~~ 145 (243)
T 1vio_A 70 PQGCVCSNDDGD-YPTIYQFFDYPLA-GKLHSAGRLDVDTTGLVLLTDDGQWSHRIT--SPKHHCEKTYLVTLADPVEEN 145 (243)
T ss_dssp CTTCBSSCCC---CCBGGGGSCTTGG-GGCEESSCCCTTCEEEEEEESCHHHHHHHH--CTTSCCCEEEEEEESSCCCTT
T ss_pred CCCCEeCCCCCC-CCcHHHHHhHHhc-CCEeEccCCCCCCeEEEEEEECHHHHHHHh--CCCCCCCEEEEEEEeCCCCHH
Confidence 999999998764 6788888876432 358899999999999999999999998887 578899999999999999876
Q ss_pred ceEEeeeeeecccCCccccccCCCCCCCCCCCcccccceEEeecCCeeeEEEeecccCceeEEEEEeeeeCcccccCcee
Q 015839 237 EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316 (399)
Q Consensus 237 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~~~~slV~~~l~TGRtHQIR~hla~lG~PIvGD~~Y 316 (399)
. ++... .+. .+.. ....+++|. |++++ .|+|+|+|.||||||||+||+++||||+||..|
T Consensus 146 ~--i~~~~-----~g~---~~~~----~~~~~~~a~--~~~l~----~sl~~~~l~tGR~HQIR~hl~~lG~pI~gd~r~ 205 (243)
T 1vio_A 146 Y--SAACA-----EGI---LLRG----EKEPTKPAK--LEILD----DYNVNLTISEGRYHQVKRMFAALGNKVVGLHRW 205 (243)
T ss_dssp H--HHHHH-----HCC---CCTT----CSSCCCCCE--EEECS----SSEEEEEESCCCTTHHHHHHHHTTCCEEEEEEE
T ss_pred H--HHHHh-----CCe---EECC----CCccceeEE--EEEeC----CEEEEEEEccCCcHHHHHHHHHCCCeEcccEEE
Confidence 3 22111 011 0100 012356665 56664 699999999999999999999999999999965
Q ss_pred e
Q 015839 317 L 317 (399)
Q Consensus 317 g 317 (399)
.
T Consensus 206 ~ 206 (243)
T 1vio_A 206 K 206 (243)
T ss_dssp E
T ss_pred E
Confidence 4
No 5
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=100.00 E-value=3.2e-44 Score=337.23 Aligned_cols=193 Identities=31% Similarity=0.373 Sum_probs=159.1
Q ss_pred eeeccCCCeEEeecCCCcccccCcccccceEEEEeecccC-CCCcccchhhhhhhhheeeeecccchhHHHHHHHhhchh
Q 015839 143 SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHD-LAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221 (399)
Q Consensus 143 ~IlyEd~~~ivvnKP~Gl~v~p~~~~~~~tv~~~L~~~~~-~~~l~pVhRLDr~TSGLLL~akd~~~a~~L~~~~~~~~v 221 (399)
.|+|||++|||||||+|++|||+.. ..+++++.+..... ...+++|||||++||||||||||+++++.|+++|+++.+
T Consensus 3 ~Ilyed~~~lvvnKP~G~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~VhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v 81 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 81 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSS-SBCCHHHHHHHHSTTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCS
T ss_pred CEEEECCCEEEEECCCCCeEecCCC-hHHHHHHHHHHHcCCCCccceEecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCe
Confidence 5899999999999999999998665 44566666644332 245789999999999999999999999999999999999
Q ss_pred hhhhheeeccccCCCceEEeeeeeeccc-CCccccccCCCCCCCCCCCcccccceEEeecCCeeeEEEeecccCceeEEE
Q 015839 222 IKRYIARVNGVFPEGEQVVDVNINYNAS-AGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIR 300 (399)
Q Consensus 222 ~K~YlA~V~G~~~~~~~~i~~~i~~~~~-~~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~~~~slV~~~l~TGRtHQIR 300 (399)
.|+|+|+|.|.++.+++.|+.+|..+.. .+...+.+ .++|+.|.|.|++++..++.|+|+|+|+||||||||
T Consensus 82 ~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~~g~~~~~~-------~~~gk~a~t~~~vl~~~~~~slv~~~l~TGR~HQIR 154 (228)
T 1v9k_A 82 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRV-------SQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 154 (228)
T ss_dssp EEEEEEEEESCCCTTCCEECCCEEEEECTTSCEEEEE-------CTTSBCCCEEEEEEEECSSEEEEEEEESSCCTTHHH
T ss_pred eEEEEEEEecccCCCCCEEeCceeccCCCCCceEEEE-------CCCCcEEEEEEEEEEEcCCeEEEEEEECCCCchHHH
Confidence 9999999999999888889988876532 22222222 146899999999999887799999999999999999
Q ss_pred EEeeeeCcccccCceeeccccc-------cccCCCccccccccccCCCCC
Q 015839 301 VHLQYTGYPIANDMLYLCEHVT-------HREGMSADRAAAYSHHSPPPV 343 (399)
Q Consensus 301 ~hla~lG~PIvGD~~Yg~~~~~-------~~~~~~~~~~~~~~~~lp~~~ 343 (399)
+||+++||||+||.+||..... ......++++..+.|.+|.+-
T Consensus 155 ~hla~lG~PI~gD~~YG~~~~~~~~~~~~~~~~r~~LHa~~l~f~hP~t~ 204 (228)
T 1v9k_A 155 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 204 (228)
T ss_dssp HHHHHTTCCBTTCTTTSCHHHHHHHHHTTCCCCSCCEEEEEEEEECTTTC
T ss_pred HHHHHCCCcEecCcccCCccccchhhcccCCCCChhhccceeEeeCCCCC
Confidence 9999999999999999973211 113467788899999998763
No 6
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=100.00 E-value=3.9e-43 Score=340.08 Aligned_cols=205 Identities=14% Similarity=0.136 Sum_probs=166.7
Q ss_pred ccCcchhhhhhhhhcCCccceeeeeEEeeeeEecCeeeeeeEEEecccccccccccCCCCeeeccceeeccCCCeEEeec
Q 015839 77 WAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCK 156 (399)
Q Consensus 77 ~~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~~~~~e~pv~~~~~~IlyEd~~~ivvnK 156 (399)
..++||++||++. +.+||+.++++|++|+|+|||+++.++++|.+||.|.+.....++ ..|||++||||||
T Consensus 4 ~~g~RLdk~La~~-g~~SR~~a~~lI~~G~V~VNG~~v~~~~~V~~gD~I~v~~~~i~~--------~~~ed~~~lvvnK 74 (290)
T 3dh3_A 4 DSSVRLNKYISES-GICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEP--------REAEDLVLIALNK 74 (290)
T ss_dssp CCCEEHHHHHHTT-TSSCHHHHHHHHHTTCEEETTEECCTTCEECTTCCEEETTEEECC--------CCGGGCCEEEEEE
T ss_pred ccchHHHHHHHhC-CCCCHHHHHHHHHCCCEEECCEEccCCcCcCCCCEEEeccccccc--------cccccceEEEEEC
Confidence 4689999999997 789999999999999999999999999999999999976432111 1379999999999
Q ss_pred CCCcccccCcccccceEEEEeecccCCCCcccchhhhhhhhheeeeecccchhHHHHHHHhhchhhhhhheeeccccCCC
Q 015839 157 PPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEG 236 (399)
Q Consensus 157 P~Gl~v~p~~~~~~~tv~~~L~~~~~~~~l~pVhRLDr~TSGLLL~akd~~~a~~L~~~~~~~~v~K~YlA~V~G~~~~~ 236 (399)
|+|++||+.+.. ..||+++|.. ...++||||||++||||||||+|++++++|. .+.+.+.|+|+|+|.|.++++
T Consensus 75 P~G~~~~~~~~~-~~tl~~~l~~---~~~~~~VhRLD~dTSGLllla~d~~~~~~L~--~~~~~v~K~Y~a~V~G~~~~~ 148 (290)
T 3dh3_A 75 PVGIVSTTEDGE-RDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKIL--RAGNDHEKEYLVTVDKPITEE 148 (290)
T ss_dssp CTTCBCCCCSSC-TTBHHHHHTC---SSCCEESSCCCTTCEEEEEEESCTTHHHHHH--CGGGCCCEEEEEEESSCCCHH
T ss_pred CCccccCCCCCC-CCcHHHHhhc---cCceeeeccCCCCCcceEEEcCCHHHHHHHH--HhhCCcCEEEEEEECCCCCHH
Confidence 999999997765 5788888754 3578999999999999999999999999999 567899999999999999865
Q ss_pred ce-EEeeeeeecccCCccccccCCCCCCCCCCCcccccceEEeecCCeeeEEEeecccCceeEEEEEeeeeCcccccCce
Q 015839 237 EQ-VVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315 (399)
Q Consensus 237 ~~-~i~~~i~~~~~~~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~~~~slV~~~l~TGRtHQIR~hla~lG~PIvGD~~ 315 (399)
.+ .+..++.+ .++......++.+ +.++|+|+|+|||+||||+||+++||||+++..
T Consensus 149 ~i~~l~~Gv~l-------------------~~~~~~~~~v~~~----~~~~l~l~l~tGR~HQIR~~~~~lG~pV~~L~R 205 (290)
T 3dh3_A 149 FIRGMSAGVPI-------------------LGTVTKKCKVKKE----APFVFRITLVQGLNRQIRRMCEHFGYEVKKLER 205 (290)
T ss_dssp HHHHHHTCCBC-------------------SSSBCCCCEEEEC----SSSEEEEEESCCCTTHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHhcCccc-------------------CCcccceEEEEEc----CCeEEEEEEeCCCChHHHHHHHHcCCeEEEeEE
Confidence 43 11222211 1222222233333 368999999999999999999999999999999
Q ss_pred eecc
Q 015839 316 YLCE 319 (399)
Q Consensus 316 Yg~~ 319 (399)
|.-.
T Consensus 206 ~~iG 209 (290)
T 3dh3_A 206 TRIM 209 (290)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8743
No 7
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=100.00 E-value=5.7e-41 Score=306.42 Aligned_cols=167 Identities=18% Similarity=0.164 Sum_probs=128.9
Q ss_pred ceeeccCCCeEEeecCCCcccccCcccccceEEEEeecccCCCCcccchhhhhhhhheeeeecccchhHHHHHHHhhchh
Q 015839 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221 (399)
Q Consensus 142 ~~IlyEd~~~ivvnKP~Gl~v~p~~~~~~~tv~~~L~~~~~~~~l~pVhRLDr~TSGLLL~akd~~~a~~L~~~~~~~~v 221 (399)
..|+|||++|||||||+||+||+++....+||.++|.. ..+++|||||++||||||||||+++++.|+++ .+.+
T Consensus 4 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~----~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~--~~~v 77 (189)
T 2oml_A 4 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQP--GKRT 77 (189)
T ss_dssp ----CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCCC----SSCEESSCCCTTCEEEEEEESCHHHHHHHHST--TSCC
T ss_pred cccccCCCeEEEEECCCCCEecCCCCCCCCCHHHHcCC----CCceECCCCCCCCeeEEEEEcCHHHHHHHhCc--cCCC
Confidence 35899999999999999999999888777898888762 46899999999999999999999999999965 7889
Q ss_pred hhhhheeeccccCCCce-EEeeeeeecccCCc-cccccCCCCCCCCCCCcccccceEEeecC-CeeeEEEeecccCceeE
Q 015839 222 IKRYIARVNGVFPEGEQ-VVDVNINYNASAGR-STAESGDSLGDTPLKGKAACTKFTRISTN-GTHSIVLCEPITGRTHQ 298 (399)
Q Consensus 222 ~K~YlA~V~G~~~~~~~-~i~~~i~~~~~~~~-~~~~~~~~~~~~~~~gk~a~t~~~~l~~~-~~~slV~~~l~TGRtHQ 298 (399)
+|+|+|+|.|.++.+.+ .++.++..+..... ..+... ......+.|.|.++... .+.|+|+|+|+||||||
T Consensus 78 ~K~Y~a~v~G~~~~~~~~~i~~~i~~~~~~~~~~~~~~~------~~~~~~~~t~~~v~~~~~~~~slv~~~l~TGR~HQ 151 (189)
T 2oml_A 78 GKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV------DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 151 (189)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEE------CCCTTCCCCSSCCC-CTTSCEEEEEEEESCCCTTH
T ss_pred cEEEEEEEcCCCCHHHHHHHHcCceeCCceeeeeEEEEe------cccccccccccccccccCCCcEEEEEEEeeCCCHH
Confidence 99999999999987552 45556543211100 001100 01112346888887765 36899999999999999
Q ss_pred EEEEeeeeCcccccCceeeccc
Q 015839 299 IRVHLQYTGYPIANDMLYLCEH 320 (399)
Q Consensus 299 IR~hla~lG~PIvGD~~Yg~~~ 320 (399)
||+||+++||||+||.+||...
T Consensus 152 IRvhla~lG~PI~gD~~Y~~g~ 173 (189)
T 2oml_A 152 VRRMTAHVGFPTLRLIRYAMGD 173 (189)
T ss_dssp HHHHHHHTTCCEEEEEEEEETT
T ss_pred HHHHHHHcCCcCcceEEEEECC
Confidence 9999999999999999999654
No 8
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=100.00 E-value=7.9e-40 Score=305.08 Aligned_cols=167 Identities=19% Similarity=0.188 Sum_probs=121.6
Q ss_pred cceeeccCCCeEEeecCCCcccccCcccccceEEEEeecccCCCCcccchhhhhhhhheeeeecccchhHHHHHHHhhch
Q 015839 141 DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220 (399)
Q Consensus 141 ~~~IlyEd~~~ivvnKP~Gl~v~p~~~~~~~tv~~~L~~~~~~~~l~pVhRLDr~TSGLLL~akd~~~a~~L~~~~~~~~ 220 (399)
.+.|+|||++|||||||+|++||+++.....||.++|.. ..+++|||||++||||||||||+++++.|+++ .+.
T Consensus 31 ~~~Ilyed~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~~----~~~~~VhRLDr~TSGllllAk~~~~~~~L~~~--~~~ 104 (217)
T 2olw_A 31 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQP--GKR 104 (217)
T ss_dssp ------CCCCEEEEEECTTBCSCSSCCTTSBCGGGTCCC----CSCEESSCCCTTCEEEEEEESCHHHHHHHHCT--TCC
T ss_pred cCceEeeCCcEEEEECCCCCEeccCCCCCCccHHHHhCc----CCceECCCCCCCCeeEEEEEcCHHHHHHHHcc--ccc
Confidence 567999999999999999999999887777898888762 36899999999999999999999999999965 688
Q ss_pred hhhhhheeeccccCCCce-EEeeeeeecccC-CccccccCCCCCCCCCCCcccccceEEeecC--CeeeEEEeecccCce
Q 015839 221 VIKRYIARVNGVFPEGEQ-VVDVNINYNASA-GRSTAESGDSLGDTPLKGKAACTKFTRISTN--GTHSIVLCEPITGRT 296 (399)
Q Consensus 221 v~K~YlA~V~G~~~~~~~-~i~~~i~~~~~~-~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~--~~~slV~~~l~TGRt 296 (399)
|.|+|+|+|.|.++.+.+ .++.++..+... ....+.+. .....+.+.+..+... .+.|+|+|+|+|||+
T Consensus 105 v~K~Y~A~V~G~~~~~~~~~i~~~i~~~~g~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~slv~~~l~TGRt 177 (217)
T 2olw_A 105 TGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV-------DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 (217)
T ss_dssp CCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEE-------CCCTTCCCCSSCCC-CCSSCEEEEEEEESCCCT
T ss_pred CCEEEEEEEccCCCHHHHHHHhCCEEeCCCcccceEEEEe-------cCCccccccccceeccCCCCcEEEEEEECcCCC
Confidence 999999999999987552 455555432110 00001000 0001122222222221 358999999999999
Q ss_pred eEEEEEeeeeCcccccCceeeccc
Q 015839 297 HQIRVHLQYTGYPIANDMLYLCEH 320 (399)
Q Consensus 297 HQIR~hla~lG~PIvGD~~Yg~~~ 320 (399)
||||+||+++||||+||.+||...
T Consensus 178 HQIRvhla~lG~PIvgD~rY~~g~ 201 (217)
T 2olw_A 178 RQVRRMTAHVGFPTLRLIRYAMGD 201 (217)
T ss_dssp THHHHHHHHTTCCEEEEEEEEETT
T ss_pred HHHHHHHHHCCCcEeCCEEEEECC
Confidence 999999999999999999999644
No 9
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=99.97 E-value=2.1e-33 Score=263.63 Aligned_cols=141 Identities=16% Similarity=0.216 Sum_probs=115.3
Q ss_pred CCCeEEeecCCCcccccCcccccceEEEEeecccCCCCcccchhhhhhhhheeeeecccchhHHHHHHHhhchhhhhhhe
Q 015839 148 EPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIA 227 (399)
Q Consensus 148 d~~~ivvnKP~Gl~v~p~~~~~~~tv~~~L~~~~~~~~l~pVhRLDr~TSGLLL~akd~~~a~~L~~~~~~~~v~K~YlA 227 (399)
+++|||||||+|++||+.+. ...||+++|.. ..+++||||||++||||||||+|++++++|+ .+++.|.|+|+|
T Consensus 13 ~~~~lvlnKPaG~vs~~~~~-~~~tv~dll~~---~~rl~~VgRLD~dTSGLLLlT~dg~~a~~L~--~p~~~v~K~Y~a 86 (237)
T 2gml_A 13 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKIL--RAGNDHEKEYLV 86 (237)
T ss_dssp CCCEEEEEECTTCBCCSSSS-CSSBHHHHSCC---SSCCEEESCCCTTCEEEEEEESCHHHHHHHH--HHHHHSCEEEEE
T ss_pred CCEEEEEECCCCCEeCCCCC-CCCCHHHHhhc---cCCeeEecCCCCCCeeEEEEEcCHHHHHHHh--CccCCCCEEEEE
Confidence 46799999999999998766 56799888864 2468999999999999999999999999999 578899999999
Q ss_pred eeccccCCCce-EEeeeeeecccCCccccccCCCCCCCCCCCcccccceEEeecCCeeeEEEeecccCceeEEEEEeeee
Q 015839 228 RVNGVFPEGEQ-VVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYT 306 (399)
Q Consensus 228 ~V~G~~~~~~~-~i~~~i~~~~~~~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~~~~slV~~~l~TGRtHQIR~hla~l 306 (399)
+|.|.++++.+ .+..++.+ .+++.+.+.++++. .++|+|.|+|||+||||+||+++
T Consensus 87 ~V~G~~~~~~i~~l~~Gv~l-------------------~~~~~~~a~~~~l~----~s~l~i~L~tGR~HQIRr~~a~l 143 (237)
T 2gml_A 87 TVDKPITEEFIRGMSAGVPI-------------------LGTVTKKCKVKKEA----PFVFRITLVQGLNRQIRRMCEHF 143 (237)
T ss_dssp EESSCCCHHHHHHHSSCCEE-------------------TTEECCCCEEEEEE----TTEEEEEECCCSTTHHHHHHHHT
T ss_pred EEcccCCHHHHHHHHcCeEe-------------------CCcccccEEEEEeC----CEEEEEEEecCCcHHHHHHHHHc
Confidence 99999876542 12222211 13344556677663 68999999999999999999999
Q ss_pred CcccccCceee
Q 015839 307 GYPIANDMLYL 317 (399)
Q Consensus 307 G~PIvGD~~Yg 317 (399)
||||+||..+.
T Consensus 144 G~pV~~L~R~~ 154 (237)
T 2gml_A 144 GYEVKKLERTR 154 (237)
T ss_dssp TCCEEEEEEEE
T ss_pred CCCEeeeEEEE
Confidence 99999998875
No 10
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=98.58 E-value=4e-09 Score=84.31 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=45.0
Q ss_pred cchhhhhhhhhcCCccceeeeeEEeeeeEecCeeeeeeEEEecccccccccc
Q 015839 80 KTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLH 131 (399)
Q Consensus 80 ~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~~~ 131 (399)
+||++||++.....||+.++++|++|.|+|||+++.++++|++||.|.+.+.
T Consensus 1 ~RLD~~L~~~~~~~sR~~~~~li~~G~V~VNg~~~~~~~~v~~gd~I~v~~~ 52 (92)
T 2k6p_A 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYL 52 (92)
T ss_dssp CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEECCTTCBCCTTCEEEECCS
T ss_pred ChHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEcCCCCCcCCCCEEEEEeC
Confidence 5899999986333489889999999999999999988999999999987654
No 11
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=98.22 E-value=5.7e-08 Score=83.10 Aligned_cols=54 Identities=6% Similarity=-0.055 Sum_probs=48.0
Q ss_pred ccCcchhhhhhhhhcCCccceeeeeEEeeeeEecCeeeeeeEEEeccccccccc
Q 015839 77 WAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFL 130 (399)
Q Consensus 77 ~~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~~ 130 (399)
..++||++||+......||+.++++|.+|.|+|||+++.+++.|+.||.|.+.+
T Consensus 6 ~~~~RLDk~L~~~~~~~SRs~a~~li~~G~V~VNG~~vk~s~~V~~GD~I~I~~ 59 (133)
T 1dm9_A 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQ 59 (133)
T ss_dssp TTCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCTTCBCCTTCEEEEEE
T ss_pred ccchhHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEcCCCCEeCCCCEEEEEe
Confidence 468999999998644579999999999999999999999999999999998754
No 12
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=98.07 E-value=1.7e-07 Score=72.68 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=45.4
Q ss_pred cCcchhhhhhhhhcCC-ccceeeeeEEeeeeEecCeee-eeeEEEecccccccc
Q 015839 78 AGKTIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHF 129 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~~-Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~ 129 (399)
+++||++||++. +.+ ||+.++++|++|.|+|||+++ +++++|.+||.|.+.
T Consensus 19 ~~~RLdk~L~~~-g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~ 71 (79)
T 1p9k_A 19 PHVELCDLLKLE-GWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 71 (79)
T ss_dssp SCCCHHHHHHHH-TSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEET
T ss_pred CCchHHHHHHHC-CCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEEC
Confidence 458999999987 665 999999999999999999998 889999999988753
No 13
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=97.84 E-value=3e-07 Score=84.48 Aligned_cols=91 Identities=13% Similarity=0.014 Sum_probs=66.1
Q ss_pred cCcchhhhhhhhhcCCccceeeeeEEeeeeEecCeee-eeeEEEecccccccccccCCCCeeeccceeeccCCCeEEee-
Q 015839 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVC- 155 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~~~~~e~pv~~~~~~IlyEd~~~ivvn- 155 (399)
.++||+++|++.....||+.++++|..|.|+|||+++ .+++.|++||.|.+....... ..+ ..++.+|
T Consensus 97 le~RLD~~L~~~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~r~~----~~~------~~~l~~~~ 166 (209)
T 2vqe_D 97 LESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNL----ELI------RQNLEAMK 166 (209)
T ss_dssp HHTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTC----HHH------HHHHHHTT
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEcCcccch----HHH------HHHHHhcC
Confidence 4689999998873346999999999999999999999 699999999999875322110 000 1223344
Q ss_pred --cCCCcccccCcccccceEEEEeec
Q 015839 156 --KPPSVPVHPCGQYRKNTVVGILQA 179 (399)
Q Consensus 156 --KP~Gl~v~p~~~~~~~tv~~~L~~ 179 (399)
||+|.+|...+. ...++++++..
T Consensus 167 ~~kp~g~l~~d~~~-~~g~v~~lp~r 191 (209)
T 2vqe_D 167 GRKVGPWLSLDVEG-MKGKFLRLPDR 191 (209)
T ss_dssp TCCCCTTCCEETTT-TEEECCSCCCG
T ss_pred CCCCCCeEEEeccc-CeEEEEEcCCH
Confidence 999999875444 34677777654
No 14
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=97.81 E-value=8.6e-07 Score=77.99 Aligned_cols=93 Identities=18% Similarity=0.039 Sum_probs=64.7
Q ss_pred ccCcchhhhhhhhhcCCccceeeeeEEeeeeEecCeee-eeeEEEecccccccccccCCCCeeeccceeeccCCCeEEee
Q 015839 77 WAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVC 155 (399)
Q Consensus 77 ~~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~~~~~e~pv~~~~~~IlyEd~~~ivvn 155 (399)
..++||+++|.+.....||+.++++|..|.|+|||+++ .+++.|++||.|.+...... ...+..--+.+ +
T Consensus 48 ~le~RLD~~L~~~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~~~------~~kl~~al~~~---~ 118 (159)
T 1c05_A 48 LLESRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSRN------LQVIKEALEAN---N 118 (159)
T ss_dssp HHHHBHHHHHHHTTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECGGGSS------CHHHHHHHHTC---C
T ss_pred HHHHHHHHHHHHcCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeCceeh------HHHHHHHHHHh---C
Confidence 34689999999873356999999999999999999999 79999999999987543211 11110000012 8
Q ss_pred cCCCcccccCcccccceEEEEeec
Q 015839 156 KPPSVPVHPCGQYRKNTVVGILQA 179 (399)
Q Consensus 156 KP~Gl~v~p~~~~~~~tv~~~L~~ 179 (399)
||+|.+|...+. ...+++++...
T Consensus 119 ~~~g~v~~d~~~-~~g~f~~lp~~ 141 (159)
T 1c05_A 119 YIPDYLSFDPEK-MEGTYTRLPER 141 (159)
T ss_dssp CCCSSEEEETTT-TEEEECSCCCT
T ss_pred CCCCeEEEecCC-CceEEEeCCCH
Confidence 999999874333 34566666543
No 15
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=3e-06 Score=64.44 Aligned_cols=48 Identities=15% Similarity=0.280 Sum_probs=42.5
Q ss_pred CcchhhhhhhhhcCC-ccceeeeeEEeeeeEecCeee-eeeEEEec--ccccc
Q 015839 79 GKTIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMV-PVSYTVKS--SQKIS 127 (399)
Q Consensus 79 g~rL~k~L~~~f~~~-Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~--gD~I~ 127 (399)
.+||+.+|.+. +.+ ||+.|+++|..|.|+|||+++ .+++.|.+ +|.|.
T Consensus 7 ~~RLD~~l~~~-gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~ 58 (71)
T 2cqj_A 7 GRRLPTVLLKL-RMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVT 58 (71)
T ss_dssp EEEHHHHHHHT-TCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEE
T ss_pred HHHHHHHHHHh-CCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEE
Confidence 37999999987 666 999999999999999999999 79999998 56665
No 16
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=97.35 E-value=8e-06 Score=74.44 Aligned_cols=52 Identities=17% Similarity=0.064 Sum_probs=46.5
Q ss_pred cCcchhhhhhhhhcCCccceeeeeEEeeeeEecCeee-eeeEEEecccccccc
Q 015839 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHF 129 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~ 129 (399)
.++||+++|++.....||+.++++|..|.|+|||+++ .+++.|++||.|++.
T Consensus 93 le~RLD~~L~r~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~ 145 (205)
T 3r8n_D 93 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 145 (205)
T ss_dssp HHTBTTHHHHTTSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCC
T ss_pred hHhhHHHHHHHhcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEec
Confidence 5789999999863356999999999999999999999 699999999999875
No 17
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=97.19 E-value=2.7e-05 Score=70.80 Aligned_cols=51 Identities=16% Similarity=0.049 Sum_probs=45.1
Q ss_pred CcchhhhhhhhhcCCccceeeeeEEeeeeEecCeee-eeeEEEecccccccc
Q 015839 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHF 129 (399)
Q Consensus 79 g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~ 129 (399)
.+||+.+|.+.....||+.++++|..|.|+|||+++ .+++.|++||.|++.
T Consensus 88 e~RLD~~L~r~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~ 139 (201)
T 3bbn_D 88 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMAR 139 (201)
T ss_dssp HSBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEEC
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEc
Confidence 589999998873245999999999999999999998 789999999999875
No 18
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=97.11 E-value=5e-05 Score=67.95 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=44.7
Q ss_pred ccCcchhhhhhhhhcCC-ccceeeeeEEeeeeEecCeee-eeeEEEecccccccc
Q 015839 77 WAGKTIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHF 129 (399)
Q Consensus 77 ~~g~rL~k~L~~~f~~~-Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~ 129 (399)
.-.+||+.+|.+. +.+ ||+.++++|..|.|+|||++| .+++.|.++|.+.|.
T Consensus 104 ~le~RLD~vL~~~-G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~ 157 (181)
T 2xzm_D 104 LMERRLQTRVFKL-NLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSID 157 (181)
T ss_dssp HHTTBHHHHHHHT-TCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEE
T ss_pred hhccchhHHHHhc-cccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEE
Confidence 3458999999887 666 999999999999999999999 899999999854433
No 19
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.08 E-value=3e-05 Score=69.19 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=44.1
Q ss_pred CcchhhhhhhhhcCC-ccceeeeeEEeeeeEecCeee-eeeEEEecc--ccccc
Q 015839 79 GKTIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMV-PVSYTVKSS--QKISH 128 (399)
Q Consensus 79 g~rL~k~L~~~f~~~-Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~g--D~I~~ 128 (399)
.+||+.+|.+. +.+ ||+.|+++|..|.|+|||++| .+++.|.+| |.|.+
T Consensus 102 e~RLD~~L~~~-G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v 154 (180)
T 3j20_D 102 ERRLQTIVYKK-GLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITY 154 (180)
T ss_dssp HTSHHHHHHHH-TSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEEC
T ss_pred hhhhhheeecC-cccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEE
Confidence 57999999886 666 999999999999999999999 799999999 77775
No 20
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=97.04 E-value=5.5e-05 Score=72.77 Aligned_cols=52 Identities=6% Similarity=-0.129 Sum_probs=45.7
Q ss_pred cCcchhhhhhhhhcCCccceeeeeEEeeeeEecC-e-ee-eeeEEEecccccccc
Q 015839 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE-E-MV-PVSYTVKSSQKISHF 129 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNG-k-~v-~~~~~v~~gD~I~~~ 129 (399)
..+||+++|++.....||+.++++|++|+|+||| + ++ +++++|.+||.|.+.
T Consensus 5 ~~~RLD~~L~~~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~ 59 (291)
T 3hp7_A 5 PKERVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLK 59 (291)
T ss_dssp CEEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEET
T ss_pred chhhHHHHHHHcCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEc
Confidence 3589999999874456999999999999999999 7 66 899999999998875
No 21
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.80 E-value=3.6e-05 Score=69.35 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=46.3
Q ss_pred cCcchhhhhhhhhcCC-ccceeeeeEEeeeeEecCeee-eeeEEEecccccccccc
Q 015839 78 AGKTIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHFLH 131 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~~-Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~~~ 131 (399)
-.+||+.+|.+. +.+ ||+.|+++|..|.|+|||++| .+++.|.+||++.|.+.
T Consensus 107 le~RLD~~L~r~-G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~~~ 161 (195)
T 3iz6_C 107 LARRLQTLVFKA-GMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFS 161 (195)
T ss_dssp TTSCCCSSCCCC-CCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSCSS
T ss_pred HHhhhhHHHHhc-cccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEEec
Confidence 457999999886 666 999999999999999999999 79999999999877543
No 22
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=96.40 E-value=0.00022 Score=64.39 Aligned_cols=49 Identities=12% Similarity=0.071 Sum_probs=42.5
Q ss_pred cCcchhhhhhhhhcCC-ccceeeeeEEeeeeEecCeee-eeeEEEeccc--ccc
Q 015839 78 AGKTIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQ--KIS 127 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~~-Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD--~I~ 127 (399)
-.+||+.+|.+. +.+ ||..|.++|..|.|+|||++| .+++.|.+|+ .|.
T Consensus 105 le~RLD~~L~r~-G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~ 157 (197)
T 3u5c_J 105 LERRLQTQVYKL-GLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHID 157 (197)
T ss_dssp HTTSHHHHHHHS-STTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCB
T ss_pred HHHHHHHHHHHc-cccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEE
Confidence 357999999886 665 999999999999999999999 7999999995 454
No 23
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=96.14 E-value=0.00049 Score=66.83 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=51.0
Q ss_pred CCeEEeecCCCcccccCcccccceEEEEeecccCCCCcccchhhhhhhhheeeeecccchhHHHHHHHhhchhhhhhhee
Q 015839 149 PDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIAR 228 (399)
Q Consensus 149 ~~~ivvnKP~Gl~v~p~~~~~~~tv~~~L~~~~~~~~l~pVhRLDr~TSGLLL~akd~~~a~~L~~~~~~~~v~K~YlA~ 228 (399)
+.+|+||||+|+.+|. ++..++...+..++...+.||-..||||+++-... .+ +...+.+ ..|+|.|.
T Consensus 25 ~Gil~vdKP~G~TS~d--------vv~~vr~~l~~kKvGH~GTLDP~AtGvL~i~~G~a-TK-l~~~l~~--~~K~Y~a~ 92 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSND--------ALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA-TK-FSQYLLD--SDKRYRVI 92 (327)
T ss_dssp CEEEEEEECTTCCHHH--------HHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGG-GG-GTHHHHT--SCEEEEEE
T ss_pred CeEEEEECCCCCCHHH--------HHHHHHHhhccceeccCCCCCCCCeeEEEEEECHH-Hh-HHHHhcc--CCcEEEEE
Confidence 4699999999998873 33334444444667789999999999999988753 33 4444443 38999998
Q ss_pred ec
Q 015839 229 VN 230 (399)
Q Consensus 229 V~ 230 (399)
+.
T Consensus 93 ~~ 94 (327)
T 1k8w_A 93 AR 94 (327)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 24
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=96.09 E-value=0.00043 Score=66.74 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=50.8
Q ss_pred CCeEEeecCCCcccccCcccccceEEEEeecccCCCCcccchhhhhhhhheeeeecccchhHHHHHHHhhchhhhhhhee
Q 015839 149 PDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIAR 228 (399)
Q Consensus 149 ~~~ivvnKP~Gl~v~p~~~~~~~tv~~~L~~~~~~~~l~pVhRLDr~TSGLLL~akd~~~a~~L~~~~~~~~v~K~YlA~ 228 (399)
+.+|+||||+|+.+|. ++..++...+..++...|.||-..||||+++-... .+|...+. ...|+|.|.
T Consensus 3 ~Gil~vdKP~G~TS~~--------vv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~a--TKl~~~l~--~~~K~Y~a~ 70 (309)
T 1r3e_A 3 HGILVAYKPKGPTSHD--------VVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQG--TRILEFYK--DLKKVYWVK 70 (309)
T ss_dssp CEEEEEEECSSSCHHH--------HHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGGT--TSCEEEEEE
T ss_pred CeEEEEECCCCCCHHH--------HHHHHHHHhccceecccccCCCCcceeEEEEECHH--HhHHHHhC--ccCcEEEEE
Confidence 3589999999998873 33334444444667889999999999999998763 23433333 248999998
Q ss_pred ec
Q 015839 229 VN 230 (399)
Q Consensus 229 V~ 230 (399)
+.
T Consensus 71 ~~ 72 (309)
T 1r3e_A 71 MR 72 (309)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 25
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=95.95 E-value=0.00055 Score=66.96 Aligned_cols=73 Identities=26% Similarity=0.266 Sum_probs=52.7
Q ss_pred ccCCCeEEeecCCCcccccCcccccceEEEEeecccCCCCcccchhhhhhhhheeeeecccchhHHHHHHHhhchhhhhh
Q 015839 146 QKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRY 225 (399)
Q Consensus 146 yEd~~~ivvnKP~Gl~v~p~~~~~~~tv~~~L~~~~~~~~l~pVhRLDr~TSGLLL~akd~~~a~~L~~~~~~~~v~K~Y 225 (399)
|-.+.+|+||||+|+.+|. ++..++...+..++...|-||-..||||+++-.. +. ++.+.+.+ ..|+|
T Consensus 43 ~~~~Gil~vdKP~g~tS~~--------vv~~vr~~~~~~KvGH~GTLDP~atGvL~v~~g~-aT-k~~~~l~~--~~K~Y 110 (334)
T 2aus_C 43 HIQYGVINLDKPPGPTSHE--------VVAWIKRILNLEKAGHGGTLDPKVSGVLPVALER-AT-RVVQALLP--AGKEY 110 (334)
T ss_dssp HHHTEEEEEEECSSSCHHH--------HHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGG-GG-GGGGGGTT--CCEEE
T ss_pred hccCcEEEEECCCCCCHHH--------HHHHHHHHhCcceeccccccCCccceeEEEEeCh-hh-hhHHHhcc--cCcEE
Confidence 3446799999999998773 3334444445567788999999999999999864 33 44433432 48999
Q ss_pred heeec
Q 015839 226 IARVN 230 (399)
Q Consensus 226 lA~V~ 230 (399)
.|.+.
T Consensus 111 ~~~~~ 115 (334)
T 2aus_C 111 VALMH 115 (334)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99875
No 26
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=95.93 E-value=0.00057 Score=66.07 Aligned_cols=71 Identities=20% Similarity=0.320 Sum_probs=52.1
Q ss_pred CCCeEEeecCCCcccccCcccccceEEEEeecccCCCCcccchhhhhhhhheeeeecccchhHHHHHHHhhchhhhhhhe
Q 015839 148 EPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIA 227 (399)
Q Consensus 148 d~~~ivvnKP~Gl~v~p~~~~~~~tv~~~L~~~~~~~~l~pVhRLDr~TSGLLL~akd~~~a~~L~~~~~~~~v~K~YlA 227 (399)
.+.+|+||||+|+.+|. ++..++...+..++...+.||-..||||+++-... . +|.+.+. ...|+|.|
T Consensus 5 ~~Gil~vdKP~G~TS~d--------vv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~a-T-Kl~~~l~--~~~K~Y~~ 72 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSHD--------VVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERA-T-KILGLLT--AAPKSYAA 72 (316)
T ss_dssp CSEEEEEEECTTCCHHH--------HHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGG-G-GGGGGTT--TSCEEEEE
T ss_pred CCeEEEEECCCCCCHHH--------HHHHHHHHhccccccccccCCCCCeEEEEEEECHH-H-hHHHHhC--cCCcEEEE
Confidence 45689999999998873 34444444555678889999999999999998753 2 3433333 34899999
Q ss_pred eec
Q 015839 228 RVN 230 (399)
Q Consensus 228 ~V~ 230 (399)
.+.
T Consensus 73 ~~~ 75 (316)
T 1sgv_A 73 TIR 75 (316)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 27
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=95.74 E-value=0.00069 Score=66.74 Aligned_cols=73 Identities=21% Similarity=0.123 Sum_probs=53.1
Q ss_pred ccCCCeEEeecCCCcccccCcccccceEEEEeecccCCCCcccchhhhhhhhheeeeecccchhHHHHHHHhhchhhhhh
Q 015839 146 QKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRY 225 (399)
Q Consensus 146 yEd~~~ivvnKP~Gl~v~p~~~~~~~tv~~~L~~~~~~~~l~pVhRLDr~TSGLLL~akd~~~a~~L~~~~~~~~v~K~Y 225 (399)
|-.+.+|+||||+|+.+|. ++..++...+..++...+-||-..||||+++-.. +. +|.+.+. ...|+|
T Consensus 63 ~~~~Gil~vdKP~G~TS~~--------vv~~vr~~l~~~KvGH~GTLDP~AtGvL~v~~G~-aT-k~~~~l~--~~~K~Y 130 (357)
T 2apo_A 63 LIKYGVVVVDKPRGPTSHE--------VSTWVKKILNLDKAGHGGTLDPKVTGVLPVALER-AT-KTIPMWH--IPPKEY 130 (357)
T ss_dssp HHHTEEEEEEECSSSCHHH--------HHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGG-GG-GGGGGTT--SSCEEE
T ss_pred hccCcEEEEECCCCCCHHH--------HHHHHHHHhCccccccccccCCCceeEEEEEeCH-HH-hHHHHhc--cCCcEE
Confidence 3456799999999998873 3334444445567888999999999999999864 33 4443343 368999
Q ss_pred heeec
Q 015839 226 IARVN 230 (399)
Q Consensus 226 lA~V~ 230 (399)
.|.+.
T Consensus 131 ~~~~~ 135 (357)
T 2apo_A 131 VCLMH 135 (357)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99875
No 28
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=95.39 E-value=0.0015 Score=64.96 Aligned_cols=73 Identities=21% Similarity=0.214 Sum_probs=52.8
Q ss_pred ccCCCeEEeecCCCcccccCcccccceEEEEeecccCCCCcccchhhhhhhhheeeeecccchhHHHHHHHhhchhhhhh
Q 015839 146 QKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRY 225 (399)
Q Consensus 146 yEd~~~ivvnKP~Gl~v~p~~~~~~~tv~~~L~~~~~~~~l~pVhRLDr~TSGLLL~akd~~~a~~L~~~~~~~~v~K~Y 225 (399)
|-.+.+|+||||+|+.+|. ++..++...+..++...+-||-..||||+++-.. +. +|.+.+.. ..|+|
T Consensus 56 ~~~~Gil~ldKP~G~TS~d--------vv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~iG~-aT-Kl~~~l~~--~~K~Y 123 (400)
T 3u28_A 56 YISSGVINLDKPSNPSSHE--------VVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDR-AT-RLVKSQQG--AGKEY 123 (400)
T ss_dssp HHHTEEEEEEECSSSCHHH--------HHHHHHHHHTCSCEEESSCCCTTCEEEEEEEEGG-GG-GGHHHHHH--SCEEE
T ss_pred hccCcEEEEECCCCCCHHH--------HHHHHHHHhCcCcccccCCCCCCCeEEEEEEECh-HH-hHhHHhcC--CCcEE
Confidence 4446899999999998873 3334444445567888999999999999999864 33 33333332 58999
Q ss_pred heeec
Q 015839 226 IARVN 230 (399)
Q Consensus 226 lA~V~ 230 (399)
.|.+.
T Consensus 124 ~a~~~ 128 (400)
T 3u28_A 124 VCIVR 128 (400)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99874
No 29
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=93.91 E-value=0.013 Score=53.39 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=52.2
Q ss_pred cCcchhhhhhhhhcC-CccceeeeeEEeeeeEecCeee-eeeEEEecccccccccccCCCCeeeccceeeccCCCeEEe
Q 015839 78 AGKTIVDLFAEEFKG-RPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTV 154 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~-~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~~~~~e~pv~~~~~~IlyEd~~~ivv 154 (399)
+.+.|.=+|.+.++. .+++++++.+.+|.|+|||+++ .+.+.+..+|+|++. ...++++|.....+++
T Consensus 6 eslPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsIt---------~e~fRli~d~kGrf~~ 75 (213)
T 3kbg_A 6 QSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEIN---------GESYRVVYNDQGALVL 75 (213)
T ss_dssp SCEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEET---------TEEEEEEECTTSCEEE
T ss_pred hceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEec---------CceeEEEecCCCcEEE
Confidence 456777788887665 6789999999999999999999 889999999999861 3345666644444433
No 30
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=93.03 E-value=0.017 Score=53.58 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=45.6
Q ss_pred cCcchhhhhhhhhcC-CccceeeeeEEeeeeEecCeee-eeeEEEecccccccc
Q 015839 78 AGKTIVDLFAEEFKG-RPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHF 129 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~-~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~ 129 (399)
+.+.|.=+|.+.++. .+++++++.+.+|.|+|||+++ .+.|.|..+|+|++.
T Consensus 41 ~~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~ 94 (243)
T 3j20_E 41 TSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIP 94 (243)
T ss_dssp TCEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEET
T ss_pred cceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEec
Confidence 467888888887765 5789999999999999999999 889999999999964
No 31
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=82.45 E-value=0.26 Score=49.50 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=0.0
Q ss_pred CcchhhhhhhhhcC-CccceeeeeEEeeeeEecCeee-eeeEEEeccccc
Q 015839 79 GKTIVDLFAEEFKG-RPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKI 126 (399)
Q Consensus 79 g~rL~k~L~~~f~~-~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I 126 (399)
+..|.++|... +. -|+++++++|.+|.|+|||+++ +.+..+..+|.+
T Consensus 352 ~i~l~~lL~~a-gl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl~ 400 (420)
T 1jil_A 352 TTNIVEVLIET-GISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI 400 (420)
T ss_dssp --------------------------------------------------
T ss_pred cccHHHHHHHc-CCccCHHHHHHHHHhCCEEECCEEecccccccCccccc
Confidence 46788988765 44 4999999999999999999998 778888777654
No 32
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=78.97 E-value=0.35 Score=45.22 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=49.0
Q ss_pred cCcchhhhhhhhhcC-CccceeeeeEEeeeeEecCeee-eeeEEEecccccccccccCCCCeeeccceeeccCCCeEEee
Q 015839 78 AGKTIVDLFAEEFKG-RPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVC 155 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~-~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~~~~~e~pv~~~~~~IlyEd~~~ivvn 155 (399)
+.+.|.=+|.+.|+. .+.+++++.+.+|.|.|||++. +..+.+-.-|+|++.- ..+.++++|.....++++
T Consensus 40 eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~k-------t~e~fRll~D~kGrf~l~ 112 (265)
T 3iz6_D 40 ECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPK-------TGENYRLLYDTKGRFRLQ 112 (265)
T ss_dssp ---CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTCEEECCS-------SCCEEEEEECTTSCEEEE
T ss_pred hheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEEEEEEcC-------CCCEEEEEECCCCcEEEE
Confidence 457787788887765 4668899999999999999998 7777777779988531 123455666555444443
No 33
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=76.40 E-value=0.64 Score=43.38 Aligned_cols=72 Identities=10% Similarity=-0.015 Sum_probs=51.0
Q ss_pred cCcchhhhhhhhhcC-CccceeeeeEEe--eeeEecCeee-eeeEEEecccccccccccCCCCeeeccceeeccCCCeEE
Q 015839 78 AGKTIVDLFAEEFKG-RPYDYYVSAVKC--GRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLT 153 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~-~Sr~~~~~~I~~--G~V~VNGk~v-~~~~~v~~gD~I~~~~~~~e~pv~~~~~~IlyEd~~~iv 153 (399)
+.+.|.=+|.+.|+. .+.+++++.+.+ |.|.|||++. +..+.+---|+|++.- ....++++|.....++
T Consensus 40 eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MDVIsI~k-------t~e~fRll~D~kGrf~ 112 (260)
T 2xzm_W 40 ESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEK-------TDQSFRILYDTKGRFV 112 (260)
T ss_dssp SCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTCEEEEGG-------GTEEEEEEECSSSCEE
T ss_pred eeehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEEEEeEcC-------CCCEEEEEEcCCccEE
Confidence 457777777777653 566788889999 9999999988 6788887789997531 1234566666665555
Q ss_pred eec
Q 015839 154 VCK 156 (399)
Q Consensus 154 vnK 156 (399)
+.+
T Consensus 113 l~~ 115 (260)
T 2xzm_W 113 LKS 115 (260)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 34
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=74.50 E-value=0.37 Score=44.97 Aligned_cols=70 Identities=9% Similarity=0.038 Sum_probs=50.6
Q ss_pred cCcchhhhhhhhhcC-CccceeeeeEEeeeeEecCeee-eeeEEEecccccccccccCCCCeeeccceeeccCCCeEEe
Q 015839 78 AGKTIVDLFAEEFKG-RPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTV 154 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~-~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~~~~~e~pv~~~~~~IlyEd~~~ivv 154 (399)
+.+.|.=+|.+.|+. .+.+++++.+.+|.|.|||++. +..+.+---|+|++.- ..+.++++|.....+++
T Consensus 40 eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~k-------t~e~fRll~D~kGrf~l 111 (261)
T 3u5c_E 40 ESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDA-------TNENFRLVYDVKGRFAV 111 (261)
T ss_dssp GEEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTCEEEETT-------TTEEEECCBCSSSCBCC
T ss_pred hheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEEEEEEcC-------CCCEEEEEECCCCcEEE
Confidence 457787788877665 4678899999999999999998 7888888889998631 12345566655444433
No 35
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=66.65 E-value=0.45 Score=37.81 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=35.8
Q ss_pred cCcchhhhhhhhhcCCccceeeeeEEeeeeEecCeeeeeeEEEeccccccccc
Q 015839 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFL 130 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~~ 130 (399)
+|.++.+.|... +.. ...-+--+....|-|||+.+..++.|+.||.|+|+-
T Consensus 34 ~g~TV~daI~~~-gi~-~~~peIdl~~~~V~Vng~~v~~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 34 EGITVQTAITQS-GIL-SQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIYR 84 (97)
T ss_dssp TTCBHHHHHHHH-THH-HHCTTCCTTTSEEEEEECSCCTTCBCCTTCEEEECC
T ss_pred CCCcHHHHHHHc-CCC-ccCCcccccccEEEEcCEECCCCccCCCCCEEEEEe
Confidence 678998888875 322 111111112456889999999999999999999863
No 36
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=65.85 E-value=3.8 Score=37.65 Aligned_cols=41 Identities=7% Similarity=-0.021 Sum_probs=33.2
Q ss_pred EeeeeEecCeeeeeeEEEe-cccccccccccCCCCeeeccceeeccCCCeEEe
Q 015839 103 KCGRIQVDEEMVPVSYTVK-SSQKISHFLHRHEPPVMAWDVSILQKEPDVLTV 154 (399)
Q Consensus 103 ~~G~V~VNGk~v~~~~~v~-~gD~I~~~~~~~e~pv~~~~~~IlyEd~~~ivv 154 (399)
.+|.|.|||+.++....++ .||.|.+ .++.+.+..++++++
T Consensus 133 ~ngtvyvNg~~i~~~~~L~~~GD~I~i-----------g~~~~~~~~~~l~i~ 174 (238)
T 1wv3_A 133 KNTDVYINYELQEQLTNKAYIGDHIYV-----------EGIWLEVQADGLNVL 174 (238)
T ss_dssp TTCCEEETTEECCSSEEEEETTCEEEE-----------TTEEEEECSSEEEEE
T ss_pred CCCCEEECCEEeccceeccCCcCEEEE-----------CCEEEEEECCEEEEE
Confidence 3778999999997777899 9999984 467777777777774
No 37
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=62.17 E-value=1.6 Score=43.65 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred CcchhhhhhhhhcC-CccceeeeeEEeeeeEecCeee-eeeEEEecccc
Q 015839 79 GKTIVDLFAEEFKG-RPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQK 125 (399)
Q Consensus 79 g~rL~k~L~~~f~~-~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~ 125 (399)
+..|.++|... +. -|+++++++|.+|.|+|||+.+ +.+..+..+|.
T Consensus 351 ~~~~~~~l~~~-gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~ 398 (419)
T 2ts1_A 351 DVPLVELLVSA-GISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHR 398 (419)
T ss_dssp -------------------------------------------------
T ss_pred cccHHHHHHHh-CCCCCHHHHHHHHHhCCEEECCEEecCcccccChhhc
Confidence 45788888765 43 4999999999999999999988 67777766554
No 38
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=60.54 E-value=2.6 Score=31.55 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=31.1
Q ss_pred cCcchhhhhhhhhcCCccceeeeeEEeeeeEecCeeeeeeEEEecccccccc
Q 015839 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHF 129 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~ 129 (399)
.+.++.++|... + .+.+ .+ .|.|||+.+..++.|+.||+|.+.
T Consensus 29 ~~~Tv~dLl~~L-~-~~~~----~v---~VavNg~~v~~~~~L~dGD~V~i~ 71 (77)
T 1rws_A 29 EGMKVRDILRAV-G-FNTE----SA---IAKVNGKVVLEDDEVKDGDFVEVI 71 (77)
T ss_dssp SSCCHHHHHHTT-T-CSSC----SS---CEEETTEEECSSSCCCSSCCCBCS
T ss_pred CCCcHHHHHHHh-C-CCCc----CE---EEEECCEECCCCCCcCCCCEEEEE
Confidence 356888877753 3 2211 11 488999999888999999999875
No 39
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=59.84 E-value=3.5 Score=30.40 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.4
Q ss_pred eeEecCeeeeeeEEEecccccccc
Q 015839 106 RIQVDEEMVPVSYTVKSSQKISHF 129 (399)
Q Consensus 106 ~V~VNGk~v~~~~~v~~gD~I~~~ 129 (399)
.|.|||+.+..++.|+.||+|.+.
T Consensus 48 ~v~vNg~~v~~~~~L~~gD~V~i~ 71 (77)
T 2q5w_D 48 QVAVNEEFVQKSDFIQPNDTVALI 71 (77)
T ss_dssp EEEETTEEECTTSEECTTCEEEEE
T ss_pred EEEECCEECCCCCCcCCCCEEEEE
Confidence 588999999888999999999865
No 40
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=52.91 E-value=1.2 Score=38.87 Aligned_cols=35 Identities=9% Similarity=-0.115 Sum_probs=30.3
Q ss_pred CcchhhhhhhhhcC-CccceeeeeEEeeeeEecCeee
Q 015839 79 GKTIVDLFAEEFKG-RPYDYYVSAVKCGRIQVDEEMV 114 (399)
Q Consensus 79 g~rL~k~L~~~f~~-~Sr~~~~~~I~~G~V~VNGk~v 114 (399)
|..|.++|... +. -|+++++++|.+|-|+|||..+
T Consensus 49 g~~ivdlLv~a-GLa~SKsEARRlI~qGGv~VNg~kv 84 (164)
T 2ktl_A 49 DKTFSKVLWSA-GLVASKSEGQRIINNNGAYVGSRPG 84 (164)
T ss_dssp SCSHHHHHHHH-TSCSTHHHHHHHHHHTCEEEEECCS
T ss_pred CCcHHHHHHHh-CcccCHHHHHHHHHhCCEEECCEec
Confidence 56799999876 54 4999999999999999999876
No 41
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=52.66 E-value=3.4 Score=31.46 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=21.7
Q ss_pred eeEecCeeeeeeEEEecccccccc
Q 015839 106 RIQVDEEMVPVSYTVKSSQKISHF 129 (399)
Q Consensus 106 ~V~VNGk~v~~~~~v~~gD~I~~~ 129 (399)
.|.|||+.+..++.|+.||+|.+.
T Consensus 60 ~v~VN~~~v~~~~~l~~gDeV~i~ 83 (89)
T 3po0_A 60 NVLRNGEAAALGEATAAGDELALF 83 (89)
T ss_dssp EEEETTEECCTTSBCCTTCEEEEE
T ss_pred EEEECCEECCCCcccCCCCEEEEE
Confidence 688999999889999999999875
No 42
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=50.56 E-value=4.5 Score=30.59 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.4
Q ss_pred eEecCeeeeeeEEEecccccccc
Q 015839 107 IQVDEEMVPVSYTVKSSQKISHF 129 (399)
Q Consensus 107 V~VNGk~v~~~~~v~~gD~I~~~ 129 (399)
.+|||+.+..++.|+.||.|++.
T Consensus 44 AkVNG~~v~L~~~L~~gd~VeIi 66 (78)
T 3hvz_A 44 AKVDGRIVPIDYKVKTGEIIDVL 66 (78)
T ss_dssp EEETTEEECTTCBCCTTCBEEEE
T ss_pred EEECCEEcCCCcccCCCCEEEEE
Confidence 36799999999999999999864
No 43
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=47.87 E-value=2.2 Score=42.87 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=35.2
Q ss_pred chhhhhhhhhc-CCccceeeeeEEeeeeEecCeee-eeeEEEecccc
Q 015839 81 TIVDLFAEEFK-GRPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQK 125 (399)
Q Consensus 81 rL~k~L~~~f~-~~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~ 125 (399)
.|.++|... + .-|+++++++|.+|.|+|||+.+ +.+..+..+|.
T Consensus 357 ~~~~ll~~~-gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~ 402 (432)
T 2jan_A 357 GIVDLLVAS-GLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDF 402 (432)
T ss_dssp SHHHHHHHH-TSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGGS
T ss_pred hHHHHHHHh-CCcccHHHHHHHHHhCCEEECCEEccChhcccChhhc
Confidence 688888865 4 35999999999999999999988 66666655543
No 44
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=45.86 E-value=5.4 Score=29.61 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=21.1
Q ss_pred eeEecCeeeeeeEEEecccccccc
Q 015839 106 RIQVDEEMVPVSYTVKSSQKISHF 129 (399)
Q Consensus 106 ~V~VNGk~v~~~~~v~~gD~I~~~ 129 (399)
.|.|||+.+..++.|+.||+|.+.
T Consensus 52 ~v~vN~~~v~~~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 52 LAAVNQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_dssp EEEETTEECCTTCBCCTTCEEEEE
T ss_pred EEEECCEECCCCCCCCCCCEEEEe
Confidence 488999999888999999999865
No 45
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=44.50 E-value=7.1 Score=27.88 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=30.5
Q ss_pred cCcchhhhhhhhhcCCccceeeeeEEeeeeEecCeeeeee----EEEecccccccc
Q 015839 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS----YTVKSSQKISHF 129 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v~~~----~~v~~gD~I~~~ 129 (399)
.+.++.++|... + .++. .+ .|.|||+.+..+ +.|+.||+|.+.
T Consensus 12 ~~~tv~~ll~~l-~-~~~~----~v---~vavN~~~v~~~~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 12 EGKTLKEVLEEM-G-VELK----GV---AVLLNEEAFLGLEVPDRPLRDGDVVEVV 58 (64)
T ss_dssp TTCCHHHHHHHH-T-BCGG----GE---EEEETTEEEEGGGCCCCCCCTTCEEEEE
T ss_pred CCCcHHHHHHHc-C-CCCC----cE---EEEECCEECCccccCCcCCCCCCEEEEE
Confidence 467888888764 3 3321 12 378999999754 899999999865
No 46
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=44.47 E-value=5 Score=31.30 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.4
Q ss_pred eeEecCeeeeeeEEEecccccccc
Q 015839 106 RIQVDEEMVPVSYTVKSSQKISHF 129 (399)
Q Consensus 106 ~V~VNGk~v~~~~~v~~gD~I~~~ 129 (399)
.|.|||+.+..++.|+.||+|.+.
T Consensus 69 ~v~VNg~~v~~~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 69 NIAVNGRYVSWDEELKDGDVVGVF 92 (98)
T ss_dssp EEEETTBCCCTTCBCCTTCEEEEE
T ss_pred EEEECCEECCCCCCCCCCCEEEEE
Confidence 488999999889999999999865
No 47
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=41.51 E-value=3.5 Score=41.38 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=36.9
Q ss_pred Ccchhhhhhhhhc-CCccceeeeeEEeeeeEecCeee-eeeEEEeccc
Q 015839 79 GKTIVDLFAEEFK-GRPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQ 124 (399)
Q Consensus 79 g~rL~k~L~~~f~-~~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD 124 (399)
+..|.++|... + .-|+++++++|.+|.|+|||+.+ +++..+..++
T Consensus 368 ~~~~~~~l~~~-~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~~~~ 414 (432)
T 1h3f_A 368 RIWVARLFTLA-GLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSR 414 (432)
T ss_dssp EEEHHHHHHHT-TSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSS
T ss_pred cCcHHHHHHHh-CCcccHHHHHHHHHhCCEEECCEEecCccceecCCC
Confidence 56788988875 4 45999999999999999999988 6777776654
No 48
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=39.55 E-value=7.7 Score=28.50 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=31.8
Q ss_pred cCcchhhhhhhhhcCCccceeeeeEEeeeeEecCeee-eeeEEEecccccccc
Q 015839 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHF 129 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~ 129 (399)
.+.++.+++... ...+ .+.+.+..-.|.|||+.+ ..++.|+.||+|.+.
T Consensus 19 ~~~tv~~ll~~L-~~~~--~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 19 KANDLKELRAIL-QEKE--GLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLL 68 (74)
T ss_dssp ECSSHHHHHHHH-HTCT--TTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEE
T ss_pred CCCcHHHHHHHH-HHCc--CHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEE
Confidence 456776666543 2211 122233455788999995 778999999999865
No 49
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=38.34 E-value=13 Score=30.45 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.1
Q ss_pred eeEecCeeeeeeEEEeccccccc
Q 015839 106 RIQVDEEMVPVSYTVKSSQKISH 128 (399)
Q Consensus 106 ~V~VNGk~v~~~~~v~~gD~I~~ 128 (399)
.++|||+.+.....|+.||+|.+
T Consensus 91 gt~VNG~~V~~~~~L~~GD~I~l 113 (124)
T 3fm8_A 91 RTFVNGSSVSSPIQLHHGDRILW 113 (124)
T ss_dssp CEEETTEECCSCEEECTTCEEEE
T ss_pred CEEECCEEcCCcEECCCCCEEEE
Confidence 47889999976788999999874
No 50
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=38.06 E-value=8 Score=27.74 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=30.5
Q ss_pred cCcchhhhhhhhhcCCccceeeeeEEeeeeEecCeeeee----eEEEecccccccc
Q 015839 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPV----SYTVKSSQKISHF 129 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v~~----~~~v~~gD~I~~~ 129 (399)
.+.++.++|... + .++ +.+ .|.|||+.+.. .+.|+.||+|.+.
T Consensus 14 ~~~tv~~ll~~l-~-~~~----~~v---~vavN~~~v~~~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 14 AGQTVHELLEQL-D-QRQ----AGA---ALAINQQIVPREQWAQHIVQDGDQILLF 60 (66)
T ss_dssp TTCCHHHHHHHH-T-CCC----SSE---EEEETTEEECHHHHTTCCCCTTEEECEE
T ss_pred CCCcHHHHHHHc-C-CCC----CCE---EEEECCEECCchhcCCcCCCCCCEEEEE
Confidence 357888888764 3 222 122 37899999965 6889999999865
No 51
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=37.83 E-value=7.5 Score=28.34 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=30.7
Q ss_pred cCcchhhhhhhhhcCCccceeeeeEEeeeeEecCeeeeeeEEEecccccccc
Q 015839 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHF 129 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~ 129 (399)
.+.++.++|... +. +.. .+ .|-|||+.+..+..|+.||.|.+.
T Consensus 22 ~~~tv~~Ll~~l-~~-~~~----~v---~vavN~~~v~~~~~L~~gD~V~ii 64 (70)
T 1ryj_A 22 APRRIKDVLGEL-EI-PIE----TV---VVKKNGQIVIDEEEIFDGDIIEVI 64 (70)
T ss_dssp SCCBHHHHHHHT-TC-CTT----TE---EEEETTEECCTTSBCCTTCEEEEE
T ss_pred CCCcHHHHHHHh-CC-CCC----CE---EEEECCEECCCcccCCCCCEEEEE
Confidence 357888888764 32 221 11 278999999888899999999865
No 52
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=37.50 E-value=12 Score=28.12 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=30.4
Q ss_pred CcchhhhhhhhhcCC-ccceeeeeEEeeeeEecCeeeee----eEEEecccccccc
Q 015839 79 GKTIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMVPV----SYTVKSSQKISHF 129 (399)
Q Consensus 79 g~rL~k~L~~~f~~~-Sr~~~~~~I~~G~V~VNGk~v~~----~~~v~~gD~I~~~ 129 (399)
+.+|.++|... +.- ++ .+ .|-|||+++.. .+.|+.||.|++.
T Consensus 17 ~~Tl~~LL~~l-~~~~~~-----~v---AVavNg~iVpr~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 17 SLNVTELLSAL-KVAQAE-----YV---TVELNGEVLEREAFDATTVKDGDAVEFL 63 (78)
T ss_dssp CEEHHHHHHHH-TCSCTT-----TC---CEEETTEECCTTHHHHCEECSSBCEEEC
T ss_pred CCcHHHHHHHc-CCCCCC-----cE---EEEECCEECChHHcCcccCCCCCEEEEE
Confidence 57898888864 432 22 22 37899999954 4899999999865
No 53
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=37.30 E-value=5.8 Score=31.06 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.2
Q ss_pred eeEecCeee----eeeEEEecccccccc
Q 015839 106 RIQVDEEMV----PVSYTVKSSQKISHF 129 (399)
Q Consensus 106 ~V~VNGk~v----~~~~~v~~gD~I~~~ 129 (399)
.|.|||+.+ ..++.|+.||+|.+.
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGIL 93 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEEE
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEEE
Confidence 589999988 467899999999864
No 54
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=35.74 E-value=9.4 Score=27.53 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=29.7
Q ss_pred cCcchhhhhhhhhcCCccceeeeeEEeeeeEecCeeeeeeEEEecccccccc
Q 015839 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHF 129 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~ 129 (399)
.|.++.+++... . .....+.+. +.|||+.+..++.|..||.|++.
T Consensus 17 ~g~T~~dla~~i-~---~~l~~~~va---a~vNg~lvdl~~~L~~~~~Veiv 61 (73)
T 2kmm_A 17 QGATALDFAYSL-H---SDLGDHCIG---AKVNHKLVPLSYVLNSGDQVEVL 61 (73)
T ss_dssp TTCBHHHHHHHH-C---SHHHHTEEE---EEETTEECCTTCBCCSSSBEEEE
T ss_pred CCCcHHHHHHHH-h---hccccceEE---EEECCEEeCCCcCcCCCCEEEEE
Confidence 467887876542 1 111122332 46899999999999999988753
No 55
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=34.30 E-value=21 Score=28.34 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=20.2
Q ss_pred EEeeeeEecCeeeeeeEEEecccccc
Q 015839 102 VKCGRIQVDEEMVPVSYTVKSSQKIS 127 (399)
Q Consensus 102 I~~G~V~VNGk~v~~~~~v~~gD~I~ 127 (399)
-..|.|.|||+.+ ....|..||.|.
T Consensus 59 S~nGtVFVNGqrv-~~~~I~~gDtI~ 83 (102)
T 3uv0_A 59 ALVGKIFVNDQEE-TVVDIGMENAVA 83 (102)
T ss_dssp ESSSCEEETTEEE-SEEEECGGGCBT
T ss_pred eccCcEEECCEEe-eeEEccCCcccc
Confidence 3468899999999 667888899864
No 56
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=34.28 E-value=11 Score=29.05 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=29.1
Q ss_pred cchhhhhhhhhcCCccceeeeeEEeeeeEecCeeeee----eEEEecccccccc
Q 015839 80 KTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPV----SYTVKSSQKISHF 129 (399)
Q Consensus 80 ~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v~~----~~~v~~gD~I~~~ 129 (399)
.+|.++|... + .+. +.+ .|.|||+.+.. .+.|+.||+|.++
T Consensus 37 ~Tv~dLL~~L-~-~~~----~~v---aVavNg~iV~~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 37 GTIQDLLASY-Q-LEN----KIV---IVERNKEIIGKERYHEVELCDRDVIEIV 81 (87)
T ss_dssp CBHHHHHHHT-T-CTT----SCC---EEEETTEEECGGGTTTSBCCSSSEEEEE
T ss_pred CcHHHHHHHh-C-CCC----CCE---EEEECCEECChhhcCCcCCCCCCEEEEE
Confidence 7888888764 3 222 112 37899999954 5789999999865
No 57
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=33.84 E-value=15 Score=32.30 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.0
Q ss_pred eeeEecCeeeeeeEEEeccccccc
Q 015839 105 GRIQVDEEMVPVSYTVKSSQKISH 128 (399)
Q Consensus 105 G~V~VNGk~v~~~~~v~~gD~I~~ 128 (399)
..++|||+.|.....|+.||+|.+
T Consensus 140 a~t~VNG~~I~~~~~L~~GDrI~l 163 (184)
T 4egx_A 140 ADTYVNGKKVTEPSILRSGNRIIM 163 (184)
T ss_dssp CCEEETTEECCSCEECCTTCEEEE
T ss_pred CeEEEcCEEccccEEcCCCCEEEE
Confidence 358899999977788999999863
No 58
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=33.39 E-value=10 Score=28.95 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=20.6
Q ss_pred eeEecCeeee----eeEEEecccccccc
Q 015839 106 RIQVDEEMVP----VSYTVKSSQKISHF 129 (399)
Q Consensus 106 ~V~VNGk~v~----~~~~v~~gD~I~~~ 129 (399)
.|.|||+.+. .++.|+.||+|.+.
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTIL 87 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEEE
Confidence 5889999986 58999999999865
No 59
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=32.94 E-value=29 Score=27.44 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=26.1
Q ss_pred cCCccceeeeeEE--eeeeEe----------cCeeeee--eEEEecccccccc
Q 015839 91 KGRPYDYYVSAVK--CGRIQV----------DEEMVPV--SYTVKSSQKISHF 129 (399)
Q Consensus 91 ~~~Sr~~~~~~I~--~G~V~V----------NGk~v~~--~~~v~~gD~I~~~ 129 (399)
.-|||+.++-... .|.|+| ||+.+.. .+.+++||.|.+-
T Consensus 38 krcSR~h~~L~~~~~~g~v~vk~lg~Np~~vng~~l~k~~~~~L~~GD~l~Ll 90 (102)
T 3kt9_A 38 KKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMV 90 (102)
T ss_dssp TTSCSSCEEEEEETTTTEEEEEECSSSCCEETTEECCBTCEEEECTTCCEEEE
T ss_pred CcccCcceEEEEecCCCEEEEEECcCCCCeECCEEcCCCCeEEeCCCCEEEEc
Confidence 3588887765544 455554 5676643 5889999988753
No 60
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=31.65 E-value=28 Score=28.21 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=25.0
Q ss_pred cCCccceeeeeEEeee-----------eEecCeeeeeeEEEeccccccc
Q 015839 91 KGRPYDYYVSAVKCGR-----------IQVDEEMVPVSYTVKSSQKISH 128 (399)
Q Consensus 91 ~~~Sr~~~~~~I~~G~-----------V~VNGk~v~~~~~v~~gD~I~~ 128 (399)
..+||..+.-....|. ++|||+.+.....|+.||+|.+
T Consensus 50 ~~VSr~Ha~i~~~~~~~~l~Dl~S~nGt~vNg~~i~~~~~L~~Gd~i~i 98 (128)
T 1r21_A 50 PVVSKQHCKIEIHEQEAILHNFSSTNPTQVNGSVIDEPVRLKHGDVITI 98 (128)
T ss_dssp TTSCTTCEEEEECSSCEEECCCCSSSCCEETTEECSSCEECCTTEEEEC
T ss_pred CCCChhHEEEEEECCEEEEEECCCCCCEEECCEECCCcEEcCCCCEEEE
Confidence 4577777665554443 4557777754578888998874
No 61
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=31.17 E-value=17 Score=30.73 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=19.2
Q ss_pred eeEecCeeeeeeEEEeccccccc
Q 015839 106 RIQVDEEMVPVSYTVKSSQKISH 128 (399)
Q Consensus 106 ~V~VNGk~v~~~~~v~~gD~I~~ 128 (399)
.++|||+.+.....|+.||+|.+
T Consensus 111 gt~VNG~~i~~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 111 DTYVNGKKVTEPSILRSGNRIIM 133 (154)
T ss_dssp CEEETTEECCSCEECCTTCEEEE
T ss_pred ceEECCEEcCCceECCCCCEEEE
Confidence 47899999976678999999974
No 62
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=29.77 E-value=12 Score=27.57 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=30.9
Q ss_pred cCcchhhhhhhhhcCCccceeeeeEEeeeeEecCeeeee----eEEEecccccccc
Q 015839 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPV----SYTVKSSQKISHF 129 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v~~----~~~v~~gD~I~~~ 129 (399)
.+.+|.++|... +.-++ .+ .|.|||+++.. .+.|+.||.|.+.
T Consensus 13 ~~~Tl~~LL~~l-~~~~~-----~v---AV~vNg~iVpr~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 13 QSASVAALMTEL-DCTGG-----HF---AVALNYDVVPRGKWDETPVTAGDEIEIL 59 (73)
T ss_dssp CCSBHHHHHHHT-TCCSS-----SC---EEEESSSEECHHHHTTCBCCTTCEEEEE
T ss_pred CCCcHHHHHHHc-CCCCC-----cE---EEEECCEECChHHcCcccCCCCCEEEEE
Confidence 468898988864 43222 22 27899999954 4789999999865
No 63
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=29.47 E-value=31 Score=26.89 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=16.7
Q ss_pred eEecCeeeeeeEEEeccccccc
Q 015839 107 IQVDEEMVPVSYTVKSSQKISH 128 (399)
Q Consensus 107 V~VNGk~v~~~~~v~~gD~I~~ 128 (399)
++|||+.+.....|+.||+|.+
T Consensus 71 t~vng~~i~~~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 71 VIVEGRKIEHQSTLSANQVVAL 92 (106)
T ss_dssp CEETTEECSSEEECCTTCCEEE
T ss_pred eEECCEECCCCeECCCCCEEEE
Confidence 5567777755578899999874
No 64
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=28.57 E-value=30 Score=27.68 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=17.6
Q ss_pred eeEecCeeeeeeEEEeccccccc
Q 015839 106 RIQVDEEMVPVSYTVKSSQKISH 128 (399)
Q Consensus 106 ~V~VNGk~v~~~~~v~~gD~I~~ 128 (399)
.++|||+.+.....|+.||+|.+
T Consensus 81 gt~vNg~~i~~~~~L~~GD~I~i 103 (120)
T 1wln_A 81 ETYVDGQRISETTMLQSGMRLQF 103 (120)
T ss_dssp CEEETSCBCSSCEEECTTCEEEE
T ss_pred CEEECCEEcCCCEECCCCCEEEE
Confidence 45678888865678999998874
No 65
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=27.49 E-value=13 Score=28.87 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=19.6
Q ss_pred eeEecCeeee----eeEEEecccccccc
Q 015839 106 RIQVDEEMVP----VSYTVKSSQKISHF 129 (399)
Q Consensus 106 ~V~VNGk~v~----~~~~v~~gD~I~~~ 129 (399)
.|.|||+-++ .++.|+.||+|.++
T Consensus 66 ~v~VN~~~~~~~~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 66 ITLINDTDWELEGEKDYILEDGDIISFT 93 (99)
T ss_dssp EEEETTEEGGGGTGGGCBCCTTCEEEEE
T ss_pred EEEECCEEccccCCCCcCcCCCCEEEEE
Confidence 4789999764 67899999999865
No 66
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=26.78 E-value=14 Score=27.79 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.0
Q ss_pred eeEecCeeee----eeEEEecccccccc
Q 015839 106 RIQVDEEMVP----VSYTVKSSQKISHF 129 (399)
Q Consensus 106 ~V~VNGk~v~----~~~~v~~gD~I~~~ 129 (399)
.|.|||+.+. .++.|+.||+|.+.
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEEE
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEEe
Confidence 4889999885 57899999999864
No 67
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=25.64 E-value=9.8 Score=28.26 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=30.4
Q ss_pred cCcchhhhhhhhhcCCccceeeeeEEeeeeEecCeeeeeeEEEecccccccc
Q 015839 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHF 129 (399)
Q Consensus 78 ~g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~ 129 (399)
+|.++.++|... + ++.+.+ .|.+||+.+..+..+. ||.|++.
T Consensus 19 ~g~Tv~dLL~~L-g-l~~~~V-------vV~vNG~~v~~d~~l~-GD~VeIv 60 (74)
T 2l32_A 19 DDGTYADLVRAV-D-LSPHEV-------TVLVDGRPVPEDQSVE-VDRVKVL 60 (74)
T ss_dssp TTCSHHHHHHTT-C-CCSSCC-------CEECCCCCCCTTSSSC-CCCEEEC
T ss_pred CCCcHHHHHHHc-C-CCcceE-------EEEECCEECCHHHCCC-CCEEEEE
Confidence 568898988874 4 444322 3788999998877665 9999864
No 68
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=25.02 E-value=9.5 Score=30.87 Aligned_cols=48 Identities=8% Similarity=0.280 Sum_probs=29.2
Q ss_pred hhhhhhhhhcCCccceee--eeEEee-eeEecCeeee----eeEEEecccccccc
Q 015839 82 IVDLFAEEFKGRPYDYYV--SAVKCG-RIQVDEEMVP----VSYTVKSSQKISHF 129 (399)
Q Consensus 82 L~k~L~~~f~~~Sr~~~~--~~I~~G-~V~VNGk~v~----~~~~v~~gD~I~~~ 129 (399)
|.++|.+.|+...++.+. .-++.+ .|.|||+.++ .++.|+.||+|.+.
T Consensus 48 Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~ii 102 (114)
T 1wgk_A 48 LLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFI 102 (114)
T ss_dssp HHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEE
T ss_pred HHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEe
Confidence 566666666444222211 112222 5889998763 57999999998864
No 69
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=24.71 E-value=51 Score=27.48 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=16.2
Q ss_pred eEecCeeee--eeEEEeccccccc
Q 015839 107 IQVDEEMVP--VSYTVKSSQKISH 128 (399)
Q Consensus 107 V~VNGk~v~--~~~~v~~gD~I~~ 128 (399)
.+|||+.+. ....|+.||+|.+
T Consensus 105 T~VNg~~i~~~~~~~L~~GD~I~l 128 (149)
T 1gxc_A 105 TFVNTELVGKGKRRPLNNNSEIAL 128 (149)
T ss_dssp EEETTEECCTTCEEECCTTEEEEE
T ss_pred eEECCEECCCCCeEECCCCCEEEE
Confidence 566777775 3577889998875
No 70
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=21.31 E-value=35 Score=26.59 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=32.2
Q ss_pred CcchhhhhhhhhcCCccceeeeeEEeeeeEecCeeeeeeEEEecccccccc
Q 015839 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHF 129 (399)
Q Consensus 79 g~rL~k~L~~~f~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~ 129 (399)
|-++.+|-..-...+-.......+=.-.++.||+.|-.++.|+.+|+|.|.
T Consensus 35 GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv 85 (93)
T 2eki_A 35 RTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIV 85 (93)
T ss_dssp SCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEE
T ss_pred CCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEE
Confidence 567767655433333333222222222467899999999999999999864
No 71
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=21.23 E-value=73 Score=25.10 Aligned_cols=37 Identities=14% Similarity=0.050 Sum_probs=24.6
Q ss_pred cCCccceeeeeEEeee-----------eEecCeeeeeeEEEeccccccc
Q 015839 91 KGRPYDYYVSAVKCGR-----------IQVDEEMVPVSYTVKSSQKISH 128 (399)
Q Consensus 91 ~~~Sr~~~~~~I~~G~-----------V~VNGk~v~~~~~v~~gD~I~~ 128 (399)
...||..+.-....|. ++|||+.+. ...|+.||+|.+
T Consensus 48 ~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~vng~~i~-~~~L~~gd~i~i 95 (115)
T 2xt9_B 48 VTVSRRHAEFRLEGGEFQVVDVGSLNGTYVNREPVD-SAVLANGDEVQI 95 (115)
T ss_dssp TTSCSSCEEEEEETTEEEEEECSCSSCEEETTEECS-EEEECTTCEEEE
T ss_pred cccChhheEEEEECCEEEEEECCCCCCeEECCEEcc-eEECCCCCEEEE
Confidence 4577777665544443 445777775 467889998875
No 72
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=20.32 E-value=65 Score=24.62 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=15.7
Q ss_pred eEecCeeeeeeEEEeccccccc
Q 015839 107 IQVDEEMVPVSYTVKSSQKISH 128 (399)
Q Consensus 107 V~VNGk~v~~~~~v~~gD~I~~ 128 (399)
++|||+.+. ...|++||.|.+
T Consensus 67 t~vng~~i~-~~~L~~gd~i~i 87 (100)
T 3po8_A 67 TTVNNAPVQ-EWQLADGDVIRL 87 (100)
T ss_dssp CEETTEECS-EEECCTTCEEEE
T ss_pred EEECCEECc-eEECCCCCEEEE
Confidence 566777775 467889999874
No 73
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=20.06 E-value=87 Score=26.36 Aligned_cols=23 Identities=4% Similarity=0.164 Sum_probs=17.7
Q ss_pred eEecCeeeee--eEEEecccccccc
Q 015839 107 IQVDEEMVPV--SYTVKSSQKISHF 129 (399)
Q Consensus 107 V~VNGk~v~~--~~~v~~gD~I~~~ 129 (399)
.+|||+.+.. ...|+.||+|.+.
T Consensus 85 T~VNg~ri~~~~~~~L~~GD~I~l~ 109 (158)
T 1dmz_A 85 SYLNNNRMIQGTKFLLQDGDEIKII 109 (158)
T ss_dssp CEETTEECCSSEEEECCSSCCEESC
T ss_pred eEECCEEcCCCceEEcCCCCEEEEe
Confidence 4578888855 4788999999863
No 74
>2vo8_A EXO-alpha-sialidase; hydrolase, cohesin, high affinity, glycoside hydrolase; 1.7A {Clostridium perfringens} SCOP: b.2.2.2
Probab=20.03 E-value=53 Score=27.36 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=17.3
Q ss_pred eeEEEEEeeeeCcccccCce
Q 015839 296 THQIRVHLQYTGYPIANDML 315 (399)
Q Consensus 296 tHQIR~hla~lG~PIvGD~~ 315 (399)
.-|||++.+++|.||..|.-
T Consensus 76 PGkVRIl~ASlG~~i~~~~d 95 (143)
T 2vo8_A 76 PGKVRILVASLGNEIEKDSD 95 (143)
T ss_dssp TTEEEEEEEESSSCBCTTCE
T ss_pred CCeEEEEEhhcCCCCCCccc
Confidence 56999999999999987754
Done!