Query 015840
Match_columns 399
No_of_seqs 209 out of 405
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 01:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 1.3E-25 2.7E-30 169.7 7.0 51 143-193 1-51 (51)
2 PLN03162 golden-2 like transcr 99.9 5.4E-23 1.2E-27 205.6 7.1 61 43-104 232-292 (526)
3 TIGR01557 myb_SHAQKYF myb-like 99.8 3.2E-21 7E-26 147.8 6.2 56 46-101 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.2 0.00087 1.9E-08 48.7 5.2 48 48-99 1-48 (48)
5 smart00426 TEA TEA domain. 89.3 0.42 9.1E-06 39.0 3.3 46 50-97 5-67 (68)
6 PF14379 Myb_CC_LHEQLE: MYB-CC 75.9 5.2 0.00011 31.1 4.2 29 158-187 6-34 (51)
7 PF15235 GRIN_C: G protein-reg 73.7 2.4 5.2E-05 38.7 2.3 19 165-183 71-89 (137)
8 smart00501 BRIGHT BRIGHT, ARID 55.7 11 0.00024 30.8 2.6 47 54-101 33-86 (93)
9 PF01519 DUF16: Protein of unk 55.2 53 0.0011 28.9 6.8 27 163-189 65-91 (102)
10 PF01285 TEA: TEA/ATTS domain 48.1 11 0.00024 39.7 2.0 54 44-98 45-112 (431)
11 PF12776 Myb_DNA-bind_3: Myb/S 47.7 21 0.00045 28.5 3.0 51 50-100 1-63 (96)
12 cd00167 SANT 'SWI3, ADA2, N-Co 45.8 74 0.0016 21.0 5.1 44 50-98 1-44 (45)
13 smart00717 SANT SANT SWI3, AD 45.2 67 0.0014 21.5 4.9 44 49-97 2-45 (49)
14 KOG1819 FYVE finger-containing 37.4 1.6E+02 0.0034 32.9 8.4 56 48-104 651-720 (990)
15 TIGR02894 DNA_bind_RsfA transc 35.1 23 0.0005 33.3 1.7 51 43-99 43-93 (161)
16 cd07646 I-BAR_IMD_IRSp53 Inver 33.0 1.4E+02 0.0031 29.6 6.7 69 144-215 66-143 (232)
17 cd07645 I-BAR_IMD_BAIAP2L1 Inv 30.3 2.1E+02 0.0046 28.4 7.4 69 144-215 64-141 (226)
18 PF07384 DUF1497: Protein of u 29.1 45 0.00097 26.4 2.1 22 49-70 36-57 (59)
19 KOG3841 TEF-1 and related tran 23.7 84 0.0018 33.6 3.6 53 48-102 76-145 (455)
20 PF00435 Spectrin: Spectrin re 20.3 3.7E+02 0.0081 20.2 5.8 50 163-215 39-88 (105)
No 1
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.92 E-value=1.3e-25 Score=169.68 Aligned_cols=51 Identities=75% Similarity=1.086 Sum_probs=49.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhc
Q 015840 143 SLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLG 193 (399)
Q Consensus 143 ~~qItEALqmQmEVQRRLHEQLEVQRhLQLRIEAQGKYLQsILEKAqe~La 193 (399)
+++|+|||++||||||||||||||||+||+|||||||||++|||||+++++
T Consensus 1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s 51 (51)
T PF14379_consen 1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS 51 (51)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999999999999999999999874
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.87 E-value=5.4e-23 Score=205.58 Aligned_cols=61 Identities=46% Similarity=0.829 Sum_probs=58.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhccc
Q 015840 43 TDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL 104 (399)
Q Consensus 43 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~~~ 104 (399)
..+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.++.
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~ 292 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRH 292 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccc
Confidence 4679999999999999999999999 799999999999999999999999999999999764
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.84 E-value=3.2e-21 Score=147.80 Aligned_cols=56 Identities=59% Similarity=0.996 Sum_probs=54.4
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhh
Q 015840 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS 101 (399)
Q Consensus 46 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~ 101 (399)
|+|++||+|+|.+||+||+.||+.+.||||.|+++|++++||+.+|+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 78999999999999999999998899999999999999999999999999999985
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.18 E-value=0.00087 Score=48.67 Aligned_cols=48 Identities=33% Similarity=0.436 Sum_probs=41.2
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhh
Q 015840 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99 (399)
Q Consensus 48 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYR 99 (399)
|-.||+|=+..|++||.++|. + .-+.|-+.|+ .+-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 568999999999999999992 1 5889999998 8999999999999985
No 5
>smart00426 TEA TEA domain.
Probab=89.30 E-value=0.42 Score=38.98 Aligned_cols=46 Identities=28% Similarity=0.423 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCch-HHhhh---cC-----------CCCc--cHHHHHHhhhh
Q 015840 50 KWTPDLHERFIEAVNQLGGADKATPK-TVMKL---MG-----------IPGL--TLYHLKSHLQK 97 (399)
Q Consensus 50 rWT~ELH~rFV~AV~qLGG~dkAtPK-~Il~l---M~-----------v~gL--T~~hVkSHLQK 97 (399)
.|.++|-..|++|+...- ...+-| .+... .| ..|. |..+|.||+|.
T Consensus 5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv 67 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 67 (68)
T ss_pred cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence 699999999999999875 333332 22211 11 2444 78889999985
No 6
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=75.94 E-value=5.2 Score=31.11 Aligned_cols=29 Identities=41% Similarity=0.519 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHH
Q 015840 158 RRLHEQLEVQRHLQLRIEAQGKYLQAVLEK 187 (399)
Q Consensus 158 RRLHEQLEVQRhLQLRIEAQGKYLQsILEK 187 (399)
--|..|+||||+|.=.+|.|.+ ||.=+|.
T Consensus 6 EALr~QmEvQrrLhEQLEvQr~-Lqlriea 34 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQRH-LQLRIEA 34 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4567788888888877887754 4433443
No 7
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=73.70 E-value=2.4 Score=38.72 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=16.8
Q ss_pred HHHHHHhHHHHHHhHHHHH
Q 015840 165 EVQRHLQLRIEAQGKYLQA 183 (399)
Q Consensus 165 EVQRhLQLRIEAQGKYLQs 183 (399)
.||+||+++||.|+|.+..
T Consensus 71 AIQkHLE~qi~e~~~q~~~ 89 (137)
T PF15235_consen 71 AIQKHLERQIEEHERQRAP 89 (137)
T ss_pred HHHHHHHHHHHHhhhcccc
Confidence 5899999999999998754
No 8
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=55.66 E-value=11 Score=30.82 Aligned_cols=47 Identities=32% Similarity=0.559 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hHHhhhcCCCCc---cHHHHHHhhhhhhhh
Q 015840 54 DLHERFIEAVNQLGGADKATP----KTVMKLMGIPGL---TLYHLKSHLQKYRLS 101 (399)
Q Consensus 54 ELH~rFV~AV~qLGG~dkAtP----K~Il~lM~v~gL---T~~hVkSHLQKYRl~ 101 (399)
+|++-|+ +|..+||.+..+- +.|.+.||++.- ...++++|..||-+.
T Consensus 33 dL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~ 86 (93)
T smart00501 33 DLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLP 86 (93)
T ss_pred cHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHH
Confidence 7999998 5999999876543 468899999752 356789999998553
No 9
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=55.17 E-value=53 Score=28.93 Aligned_cols=27 Identities=44% Similarity=0.473 Sum_probs=22.4
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 015840 163 QLEVQRHLQLRIEAQGKYLQAVLEKAQ 189 (399)
Q Consensus 163 QLEVQRhLQLRIEAQGKYLQsILEKAq 189 (399)
|=|.-+.||.+|.+||+-|++|++.-+
T Consensus 65 QGEqIkel~~e~k~qgktL~~I~~~L~ 91 (102)
T PF01519_consen 65 QGEQIKELQVEQKAQGKTLQLILKTLQ 91 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445568899999999999999997644
No 10
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=48.14 E-value=11 Score=39.75 Aligned_cols=54 Identities=22% Similarity=0.312 Sum_probs=29.3
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchH--------------HhhhcCCCCccHHHHHHhhhhh
Q 015840 44 DAKPRLKWTPDLHERFIEAVNQLGGADKATPKT--------------VMKLMGIPGLTLYHLKSHLQKY 98 (399)
Q Consensus 44 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~--------------Il~lM~v~gLT~~hVkSHLQKY 98 (399)
+.+..-+|.+++...|++|+...-=..+++-+. |...-| .-=|+.+|.||+|..
T Consensus 45 ~~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg-~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 45 DGDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTG-KTRTRKQVSSHIQVL 112 (431)
T ss_dssp -GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS-----SHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhC-cccchhHHHHHHHHH
Confidence 356788999999999999998765111222110 111111 223788999999998
No 11
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=47.72 E-value=21 Score=28.52 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHHHH---hCCC-CCCCch-----HHhhhcCC---CCccHHHHHHhhhhhhh
Q 015840 50 KWTPDLHERFIEAVNQ---LGGA-DKATPK-----TVMKLMGI---PGLTLYHLKSHLQKYRL 100 (399)
Q Consensus 50 rWT~ELH~rFV~AV~q---LGG~-dkAtPK-----~Il~lM~v---~gLT~~hVkSHLQKYRl 100 (399)
+||++..+-||+.+-+ .|.- .....| .|.+.|+- -.+|..+|++|+...|.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 5999999999998843 3433 233443 35555552 45688999999875444
No 12
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=45.76 E-value=74 Score=21.01 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhh
Q 015840 50 KWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98 (399)
Q Consensus 50 rWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKY 98 (399)
.||++=...|+.++..+|- ..-+.|-+.|+ +=|...|+.+..++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~--~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP--GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC--CCCHHHHHHHHHHh
Confidence 4999999999999999982 23466777664 46777888776543
No 13
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=45.21 E-value=67 Score=21.47 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=32.7
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhh
Q 015840 49 LKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQK 97 (399)
Q Consensus 49 lrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQK 97 (399)
-.||++=...|+.+|.++| . ..=+.|-+.|+ +=|...|+.+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g-~--~~w~~Ia~~~~--~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYG-K--NNWEKIAKELP--GRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHcC--CCCHHHHHHHHHH
Confidence 4699999999999999998 1 22356666664 6777778776554
No 14
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=37.44 E-value=1.6e+02 Score=32.94 Aligned_cols=56 Identities=29% Similarity=0.412 Sum_probs=27.7
Q ss_pred CccCCHH-HHHHHHHHH---HHhCCCCCCC-chHHhh---hcCC----CCcc--HHHHHHhhhhhhhhccc
Q 015840 48 RLKWTPD-LHERFIEAV---NQLGGADKAT-PKTVMK---LMGI----PGLT--LYHLKSHLQKYRLSKNL 104 (399)
Q Consensus 48 RlrWT~E-LH~rFV~AV---~qLGG~dkAt-PK~Il~---lM~v----~gLT--~~hVkSHLQKYRl~~~~ 104 (399)
+++-|++ ||+.||... .+|- ..-|. -.+||+ +|++ +.|. -.--.|-|=.||...+-
T Consensus 651 kfksse~llhrlfvciagvadqlq-tnfasdirkilksvflmnmstaqeeidipektkeselfefrasend 720 (990)
T KOG1819|consen 651 KFKSSEDLLHRLFVCIAGVADQLQ-TNFASDIRKILKSVFLMNMSTAQEEIDIPEKTKESELFEFRASEND 720 (990)
T ss_pred ccccHHHHHHHHHHHHHhHHHHHh-hhhHHHHHHHHHHHHhhccchhhhhcccccccchhhhhhhhcccch
Confidence 4444554 689997532 3332 11121 234554 5654 1121 12235778888876543
No 15
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.10 E-value=23 Score=33.27 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=38.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhh
Q 015840 43 TDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99 (399)
Q Consensus 43 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYR 99 (399)
|.+...|||+..+-..+.+||...- -.+-.++.. ...||+..|-+-||.|.
T Consensus 43 TsAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~ 93 (161)
T TIGR02894 43 TAAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLK 93 (161)
T ss_pred cHHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHH
Confidence 5667899999999999999998753 122222221 26799999999999986
No 16
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=32.96 E-value=1.4e+02 Score=29.64 Aligned_cols=69 Identities=28% Similarity=0.425 Sum_probs=49.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH---------HHHHhHHHHHHhHHHHHHHHHHHHHhccccCCccchHHHhhhhhHHHh
Q 015840 144 LHISETIQMQIEVQRRLHEQLEV---------QRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVS 214 (399)
Q Consensus 144 ~qItEALqmQmEVQRRLHEQLEV---------QRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~gleaak~eLseL~s 214 (399)
..|..||.-=-+|+|.++.+||+ -..|+-++|..-|||...+.+=|- .+-.-..++|-++++|--+--
T Consensus 66 keLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kky~~---e~k~k~~sleK~qseLKKlRr 142 (232)
T cd07646 66 KELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLTAALKKYQT---EHRSKGESLEKCQAELKKLRK 142 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45677776555888888777773 357999999999999987776443 233445678888888777654
Q ss_pred h
Q 015840 215 K 215 (399)
Q Consensus 215 ~ 215 (399)
+
T Consensus 143 K 143 (232)
T cd07646 143 K 143 (232)
T ss_pred h
Confidence 3
No 17
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=30.27 E-value=2.1e+02 Score=28.40 Aligned_cols=69 Identities=20% Similarity=0.357 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHH---------HHHHHhHHHHHHhHHHHHHHHHHHHHhccccCCccchHHHhhhhhHHHh
Q 015840 144 LHISETIQMQIEVQRRLHEQLE---------VQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVS 214 (399)
Q Consensus 144 ~qItEALqmQmEVQRRLHEQLE---------VQRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~gleaak~eLseL~s 214 (399)
..|.++|--=-||+|+++.||| +-..|.-.+|..-|||...+.+=|. .+-.-..++|-+.++|--+--
T Consensus 64 keLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kkyq~---E~k~k~dsLeK~~seLKK~RR 140 (226)
T cd07645 64 KELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMTATLKRYQT---EHKNKLDSLEKSQADLKKIRR 140 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 3567777555699999999887 4468899999999999988877443 233445678888877777654
Q ss_pred h
Q 015840 215 K 215 (399)
Q Consensus 215 ~ 215 (399)
+
T Consensus 141 K 141 (226)
T cd07645 141 K 141 (226)
T ss_pred c
Confidence 4
No 18
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=29.08 E-value=45 Score=26.39 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.2
Q ss_pred ccCCHHHHHHHHHHHHHhCCCC
Q 015840 49 LKWTPDLHERFIEAVNQLGGAD 70 (399)
Q Consensus 49 lrWT~ELH~rFV~AV~qLGG~d 70 (399)
-++..|+|..|-+-|..|||-+
T Consensus 36 ~kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 36 NKFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred hHhhHHHHHHHHHHHHHhcccc
Confidence 4578999999999999999853
No 19
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=23.73 E-value=84 Score=33.57 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=35.5
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchHHhh----hcC----------C---CCccHHHHHHhhhhhhhhc
Q 015840 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMK----LMG----------I---PGLTLYHLKSHLQKYRLSK 102 (399)
Q Consensus 48 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~----lM~----------v---~gLT~~hVkSHLQKYRl~~ 102 (399)
-=+|.++.-+.|.+|+...- .--+-|-||. +.| . +-=|+.+|.||.|..-..+
T Consensus 76 egvWSpdIEqsFqEALaiyp--pcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk 145 (455)
T KOG3841|consen 76 EGVWSPDIEQSFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 145 (455)
T ss_pred ccccChhHHHHHHHHHhhcC--CCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 45899999999999998864 2233344442 111 1 3347889999999765444
No 20
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=20.34 E-value=3.7e+02 Score=20.24 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=30.4
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHhccccCCccchHHHhhhhhHHHhh
Q 015840 163 QLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSK 215 (399)
Q Consensus 163 QLEVQRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~gleaak~eLseL~s~ 215 (399)
++.-.+.++--|.....-|..|.+.|+..+... +.....-+..+.+|...
T Consensus 39 ~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~---~~~~~~i~~~~~~l~~~ 88 (105)
T PF00435_consen 39 QLKKHKELQEEIESRQERLESLNEQAQQLIDSG---PEDSDEIQEKLEELNQR 88 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HTTHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHH
Confidence 334556666667777778888888888764432 33334455555555543
Done!