Query 015840
Match_columns 399
No_of_seqs 209 out of 405
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 03:26:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 9.9E-29 3.4E-33 192.8 6.9 62 42-104 1-62 (64)
2 2yus_A SWI/SNF-related matrix- 89.8 1 3.5E-05 35.6 7.1 47 46-98 16-62 (79)
3 2yum_A ZZZ3 protein, zinc fing 87.1 1.1 3.9E-05 34.1 5.6 55 45-102 5-62 (75)
4 2cu7_A KIAA1915 protein; nucle 86.5 1.6 5.4E-05 33.3 6.1 52 45-102 6-57 (72)
5 2hzd_A Transcriptional enhance 84.2 0.95 3.3E-05 36.9 4.0 58 45-104 3-77 (82)
6 1x41_A Transcriptional adaptor 81.3 1.6 5.6E-05 32.2 4.0 51 45-100 5-55 (60)
7 2iw5_B Protein corest, REST co 77.5 3.2 0.00011 39.5 5.6 54 44-103 129-182 (235)
8 2cqq_A RSGI RUH-037, DNAJ homo 77.3 5.1 0.00017 31.2 5.9 49 48-102 8-59 (72)
9 2xag_B REST corepressor 1; ami 75.4 3.8 0.00013 42.4 6.0 53 46-104 378-430 (482)
10 2cqr_A RSGI RUH-043, DNAJ homo 67.0 25 0.00086 27.4 7.7 50 48-100 18-68 (73)
11 3sjm_A Telomeric repeat-bindin 64.7 16 0.00056 27.5 6.0 51 42-95 5-55 (64)
12 2elk_A SPCC24B10.08C protein; 63.2 8.2 0.00028 28.3 4.0 48 48-100 9-57 (58)
13 1ity_A TRF1; helix-turn-helix, 60.4 20 0.00067 26.8 5.8 53 44-99 6-58 (69)
14 2ba2_A D12_ORF131, hypothetica 60.1 28 0.00096 28.6 6.9 41 146-189 34-74 (85)
15 3uun_A Dystrophin; triple heli 56.4 33 0.0011 26.4 6.7 56 160-215 38-93 (119)
16 2d9a_A B-MYB, MYB-related prot 52.3 14 0.00047 26.8 3.6 50 44-98 4-53 (60)
17 3uul_A Utrophin; spectrin repe 50.8 38 0.0013 26.1 6.3 55 161-215 39-93 (118)
18 1wgx_A KIAA1903 protein; MYB D 50.5 25 0.00086 27.7 5.1 50 50-102 10-60 (73)
19 1guu_A C-MYB, MYB proto-oncoge 50.2 36 0.0012 23.8 5.5 46 48-98 3-48 (52)
20 2kes_A Synphilin-1; synphillin 48.0 15 0.00052 27.0 3.2 24 155-178 15-42 (48)
21 4eef_G F-HB80.4, designed hema 47.7 7.7 0.00026 31.1 1.7 47 48-97 20-67 (74)
22 2da3_A Alpha-fetoprotein enhan 47.7 37 0.0013 25.5 5.6 62 40-104 13-74 (80)
23 2li6_A SWI/SNF chromatin-remod 46.3 3.6 0.00012 34.2 -0.4 46 53-101 49-98 (116)
24 2yqk_A Arginine-glutamic acid 45.6 21 0.0007 26.7 3.7 47 44-95 5-51 (63)
25 2lm1_A Lysine-specific demethy 42.5 8.5 0.00029 31.2 1.3 48 53-101 44-97 (107)
26 3ok8_A Brain-specific angiogen 39.0 92 0.0032 29.2 7.8 65 145-212 72-145 (222)
27 2eqy_A RBP2 like, jumonji, at 38.8 12 0.0004 31.4 1.6 47 54-101 43-95 (122)
28 2dim_A Cell division cycle 5-l 38.3 90 0.0031 23.1 6.3 49 45-98 6-54 (70)
29 1gvd_A MYB proto-oncogene prot 38.0 72 0.0025 22.2 5.5 46 48-98 3-48 (52)
30 1c20_A DEAD ringer protein; DN 37.9 11 0.00038 31.7 1.3 47 54-101 53-106 (128)
31 2cxy_A BAF250B subunit, HBAF25 37.5 11 0.00037 31.7 1.2 47 54-101 52-104 (125)
32 2jrz_A Histone demethylase jar 37.2 11 0.00038 31.4 1.2 47 54-101 41-93 (117)
33 2eqr_A N-COR1, N-COR, nuclear 36.5 40 0.0014 24.8 4.1 45 44-94 8-52 (61)
34 2dmt_A Homeobox protein BARH-l 36.1 1.3E+02 0.0043 22.8 7.0 67 35-104 8-74 (80)
35 2cjj_A Radialis; plant develop 35.9 52 0.0018 26.7 4.9 49 49-102 9-60 (93)
36 1w0t_A Telomeric repeat bindin 34.3 86 0.0029 22.1 5.4 48 48-98 2-49 (53)
37 2jxj_A Histone demethylase jar 33.9 12 0.0004 29.8 0.8 46 54-100 37-88 (96)
38 1ig6_A MRF-2, modulator recogn 31.3 9.9 0.00034 30.9 -0.0 48 53-101 33-87 (107)
39 2kk0_A AT-rich interactive dom 30.6 19 0.00066 31.0 1.7 47 54-101 65-118 (145)
40 2rq5_A Protein jumonji; develo 27.4 23 0.00077 30.1 1.5 48 54-102 43-97 (121)
41 2crg_A Metastasis associated p 26.7 59 0.002 24.8 3.6 47 44-95 4-50 (70)
42 1kkx_A Transcription regulator 25.9 23 0.00079 29.9 1.3 46 54-102 49-98 (123)
43 2din_A Cell division cycle 5-l 22.9 1.7E+02 0.0059 21.3 5.5 50 46-102 7-56 (66)
44 2jeo_A Uridine-cytidine kinase 21.9 26 0.0009 30.9 0.9 37 1-37 1-39 (245)
45 4fla_A Regulation of nuclear P 20.9 2.6E+02 0.0087 24.5 7.0 69 145-213 76-144 (152)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=9.9e-29 Score=192.77 Aligned_cols=62 Identities=40% Similarity=0.785 Sum_probs=58.7
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhccc
Q 015840 42 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL 104 (399)
Q Consensus 42 s~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~~~ 104 (399)
++.+|||++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+..+.
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999 799999999999999999999999999999998653
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=89.83 E-value=1 Score=35.64 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=39.0
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhh
Q 015840 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98 (399)
Q Consensus 46 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKY 98 (399)
..+-.||+|=+.+|++||...|+ .=+.|-+.|+ +=|..+++.|.++|
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRL 62 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence 34678999999999999999993 2356777664 79999999999987
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.11 E-value=1.1 Score=34.10 Aligned_cols=55 Identities=13% Similarity=0.244 Sum_probs=42.0
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCch---HHhhhcCCCCccHHHHHHhhhhhhhhc
Q 015840 45 AKPRLKWTPDLHERFIEAVNQLGGADKATPK---TVMKLMGIPGLTLYHLKSHLQKYRLSK 102 (399)
Q Consensus 45 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK---~Il~lM~v~gLT~~hVkSHLQKYRl~~ 102 (399)
...+-.||+|=+++|++||..+| .+...|. .|-+.| +|=|..+|+.|.++|-...
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 34456899999999999999998 3332233 455554 6899999999999997654
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=86.53 E-value=1.6 Score=33.27 Aligned_cols=52 Identities=27% Similarity=0.374 Sum_probs=41.7
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhc
Q 015840 45 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102 (399)
Q Consensus 45 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~ 102 (399)
...+-.||+|=++.|+++|..+|- .=+.|-+. ++|=|-.+|+.|.++|-..+
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 345678999999999999999992 34556665 47899999999999986554
No 5
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=84.21 E-value=0.95 Score=36.87 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=37.9
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhh---hc-C-----------C--CCccHHHHHHhhhhhhhhccc
Q 015840 45 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMK---LM-G-----------I--PGLTLYHLKSHLQKYRLSKNL 104 (399)
Q Consensus 45 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~---lM-~-----------v--~gLT~~hVkSHLQKYRl~~~~ 104 (399)
++..-+|.++|-..|++|+...- +. -+-|-+|. .| | . +-=|+.+|.||||.-+..+..
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp-~~-g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYP-PC-GRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSC-SS-SCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred CCcCCcCCHHHHHHHHHHHHHcC-CC-CccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 34566899999999999999875 21 12222221 11 1 1 233788999999988776543
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=81.30 E-value=1.6 Score=32.16 Aligned_cols=51 Identities=24% Similarity=0.209 Sum_probs=39.8
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhh
Q 015840 45 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100 (399)
Q Consensus 45 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl 100 (399)
.-.+-.||+|=.+++++||..+| . ..=+.|-+.| +|=|-.+++.|.++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 34466899999999999999999 1 1235566666 68899999999988754
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=77.45 E-value=3.2 Score=39.53 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=43.9
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhcc
Q 015840 44 DAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKN 103 (399)
Q Consensus 44 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~~ 103 (399)
..+..-+||+|=+..|++|+...|- .=..|-++ |++=|..+|++|..+||...+
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHhh
Confidence 3456779999999999999999982 25567666 578999999999999986644
No 8
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=77.35 E-value=5.1 Score=31.21 Aligned_cols=49 Identities=14% Similarity=0.323 Sum_probs=38.9
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchH---HhhhcCCCCccHHHHHHhhhhhhhhc
Q 015840 48 RLKWTPDLHERFIEAVNQLGGADKATPKT---VMKLMGIPGLTLYHLKSHLQKYRLSK 102 (399)
Q Consensus 48 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~---Il~lM~v~gLT~~hVkSHLQKYRl~~ 102 (399)
.-.||.|=+..|+.|+..+++ -||.+ |-..| |=|..+|+.|.+++.-..
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHhc
Confidence 346999999999999999983 36664 66666 679999999988875543
No 9
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=75.37 E-value=3.8 Score=42.44 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=43.6
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhccc
Q 015840 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL 104 (399)
Q Consensus 46 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~~~ 104 (399)
+..-+||++=|..|++||.+.|- .=+.|-+.++- =|..+|++|.++||....+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTTH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHhCh
Confidence 45689999999999999999982 35667777664 4999999999999886554
No 10
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=66.99 E-value=25 Score=27.37 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=38.5
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhc-CCCCccHHHHHHhhhhhhh
Q 015840 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLM-GIPGLTLYHLKSHLQKYRL 100 (399)
Q Consensus 48 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM-~v~gLT~~hVkSHLQKYRl 100 (399)
+-.||++=...|++||..+|. -+|..--++= -|||=|..+|+.|.+.+.-
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 446999999999999999982 3776533322 2579999999999987653
No 11
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=64.69 E-value=16 Score=27.46 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=36.5
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhh
Q 015840 42 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHL 95 (399)
Q Consensus 42 s~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHL 95 (399)
++..+.|-.||+|=-++.+++|.+.|. -.=+.|.+.+++.|=|-.+++-..
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw 55 (64)
T 3sjm_A 5 TTNITKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRW 55 (64)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHH
Confidence 344456778999999999999999982 124568888877788888887544
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=63.19 E-value=8.2 Score=28.28 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=36.4
Q ss_pred CccCCHHHHHHHHHHHHHhC-CCCCCCchHHhhhcCCCCccHHHHHHhhhhhhh
Q 015840 48 RLKWTPDLHERFIEAVNQLG-GADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100 (399)
Q Consensus 48 RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl 100 (399)
+-.||+|=..++++||.+.| +- =+.|-+.|+. |=|..+++.|.++|-+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~----W~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGN----WADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTC----HHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC----HHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 44699999999999999998 32 3455555531 6788999999887743
No 13
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=60.36 E-value=20 Score=26.84 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=41.5
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhh
Q 015840 44 DAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99 (399)
Q Consensus 44 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYR 99 (399)
.+++|-.||+|=-...+++|..+|. -.=+.|.+.|+..|=|-.+++-+...|-
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 4677889999999999999999981 1236677888655888888887766653
No 14
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=60.14 E-value=28 Score=28.58 Aligned_cols=41 Identities=37% Similarity=0.436 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 015840 146 ISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQ 189 (399)
Q Consensus 146 ItEALqmQmEVQRRLHEQLEVQRhLQLRIEAQGKYLQsILEKAq 189 (399)
|.+.+..|=|-=+.--||+ +.||+-+.|||+-|+.||+--+
T Consensus 34 ie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL~ 74 (85)
T 2ba2_A 34 VMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEALQ 74 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666766654333333444 8899999999999999997544
No 15
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=56.43 E-value=33 Score=26.38 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhccccCCccchHHHhhhhhHHHhh
Q 015840 160 LHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSK 215 (399)
Q Consensus 160 LHEQLEVQRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~gleaak~eLseL~s~ 215 (399)
+..||+-.+.|+--|+++..-+.+|.+.|++.+.....++.....-+..+.+|...
T Consensus 38 v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~r 93 (119)
T 3uun_A 38 VKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSR 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34556666778888899999999999999988875444333333345555555443
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=52.29 E-value=14 Score=26.84 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=37.7
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhh
Q 015840 44 DAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98 (399)
Q Consensus 44 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKY 98 (399)
+...|-.||+|=-++++++|.++|- ..=..|-+.| +|=|-.+++.+..+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 3456778999999999999999981 1224555554 678888888887766
No 17
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=50.84 E-value=38 Score=26.10 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhccccCCccchHHHhhhhhHHHhh
Q 015840 161 HEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSK 215 (399)
Q Consensus 161 HEQLEVQRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~gleaak~eLseL~s~ 215 (399)
.+||+-.+.|+--|+++..-+.+|.+.|++.+.....++.....-+..|.+|...
T Consensus 39 ~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~r 93 (118)
T 3uul_A 39 KEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNAR 93 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHH
Confidence 3455566777888899999999999999988765433333333445666666554
No 18
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=50.55 E-value=25 Score=27.73 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCchHHhhhc-CCCCccHHHHHHhhhhhhhhc
Q 015840 50 KWTPDLHERFIEAVNQLGGADKATPKTVMKLM-GIPGLTLYHLKSHLQKYRLSK 102 (399)
Q Consensus 50 rWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM-~v~gLT~~hVkSHLQKYRl~~ 102 (399)
.||.+=..+|..|+..++ +.+|-+--++- -|+|=|.+.|+.|.+...-.+
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 599999999999999986 45787654332 368899999999887764433
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=50.21 E-value=36 Score=23.79 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=36.0
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhh
Q 015840 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98 (399)
Q Consensus 48 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKY 98 (399)
|-.||+|=..+++++|.+.|. ..=+.|-+.| +|=|-.+++.|..+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999982 2345666665 688888898887766
No 20
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=47.99 E-value=15 Score=27.01 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=18.5
Q ss_pred HHHHHHHHH----HHHHHHHhHHHHHHh
Q 015840 155 EVQRRLHEQ----LEVQRHLQLRIEAQG 178 (399)
Q Consensus 155 EVQRRLHEQ----LEVQRhLQLRIEAQG 178 (399)
.+-|.|+|| +.+|.+||.-+|||.
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~k 42 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 566788888 457999998888873
No 21
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=47.75 E-value=7.7 Score=31.11 Aligned_cols=47 Identities=23% Similarity=0.240 Sum_probs=35.5
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcC-CCCccHHHHHHhhhh
Q 015840 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMG-IPGLTLYHLKSHLQK 97 (399)
Q Consensus 48 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~-v~gLT~~hVkSHLQK 97 (399)
--.||.+=.+.|..|+...+ +-||.+--++-. |||=|...|+.|.|-
T Consensus 20 s~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34699999999999998874 567876544333 679999999999763
No 22
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=47.71 E-value=37 Score=25.46 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=41.1
Q ss_pred cccCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhccc
Q 015840 40 VLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL 104 (399)
Q Consensus 40 v~s~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~~~ 104 (399)
.....+++|.++|++-- ..++++.... ...++..+.++...-|||..+|+.=.|.-|...+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql-~~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 74 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQL-EILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERK 74 (80)
T ss_dssp CCCCCTTCCSSCCTTTH-HHHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCHHHH-HHHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhh
Confidence 34456677888888633 3344444443 34566666666666789999999999888876544
No 23
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=46.27 E-value=3.6 Score=34.23 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCc----hHHhhhcCCCCccHHHHHHhhhhhhhh
Q 015840 53 PDLHERFIEAVNQLGGADKATP----KTVMKLMGIPGLTLYHLKSHLQKYRLS 101 (399)
Q Consensus 53 ~ELH~rFV~AV~qLGG~dkAtP----K~Il~lM~v~gLT~~hVkSHLQKYRl~ 101 (399)
-+|+.-|.. |..+||.++.+. +.|.+.||++. -..|++|..||=+.
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLP 98 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHSH
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHHH
Confidence 378888875 788999987765 36889999987 67899999988655
No 24
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.60 E-value=21 Score=26.75 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=32.1
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhh
Q 015840 44 DAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHL 95 (399)
Q Consensus 44 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHL 95 (399)
+...+-.||+|=++.|.+|+...| -+ =..|-+.| |+.-|..+|..+.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYG-KN---FFRIRKEL-LPNKETGELITFY 51 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTC-SC---HHHHHHHS-CTTSCHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCcHHHHHHHH
Confidence 344567899999999999999998 22 23343311 5667777776443
No 25
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=42.54 E-value=8.5 Score=31.16 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCcc--HHHHHHhhhhhhhh
Q 015840 53 PDLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLT--LYHLKSHLQKYRLS 101 (399)
Q Consensus 53 ~ELH~rFV~AV~qLGG~dkAtPK----~Il~lM~v~gLT--~~hVkSHLQKYRl~ 101 (399)
-+|++-|.. |..+||.++.+-+ .|.+.||+|.-| -..++.|..||=+.
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 379998876 7789999877653 588999997633 35688888888554
No 26
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=39.05 E-value=92 Score=29.21 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHH---------HHHHHhHHHHHHhHHHHHHHHHHHHHhccccCCccchHHHhhhhhHH
Q 015840 145 HISETIQMQIEVQRRLHEQLE---------VQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSEL 212 (399)
Q Consensus 145 qItEALqmQmEVQRRLHEQLE---------VQRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~gleaak~eLseL 212 (399)
.|.+||.-=-|+||+|..+|| +-.+|+.+||.-.||++..+.+=+.. +......++.+.++|--+
T Consensus 72 eLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K~y~~e---~k~~~~~leK~~~elkK~ 145 (222)
T 3ok8_A 72 ILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIE---YRHRAANLEKCMSELWRM 145 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHh
Confidence 477888665699999999987 45689999999999998665432222 222233455555555444
No 27
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.76 E-value=12 Score=31.45 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCcc--HHHHHHhhhhhhhh
Q 015840 54 DLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLT--LYHLKSHLQKYRLS 101 (399)
Q Consensus 54 ELH~rFV~AV~qLGG~dkAtPK----~Il~lM~v~gLT--~~hVkSHLQKYRl~ 101 (399)
+|++-|.. |..+||.++.+-+ .|.+.||++.-+ ...++.|..||=+.
T Consensus 43 DLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 43 DLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred cHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 78888875 8899999876654 588999997533 35788888888665
No 28
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.31 E-value=90 Score=23.13 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=38.2
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhh
Q 015840 45 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98 (399)
Q Consensus 45 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKY 98 (399)
...|=.||+|=-++++++|..+| . ..=+.|-..|+ |=|-.+++-+...|
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G-~--~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYG-K--NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTC-S--SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 34567899999999999999998 1 12356777764 78899998887776
No 29
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=37.98 E-value=72 Score=22.24 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=34.8
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhh
Q 015840 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98 (399)
Q Consensus 48 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKY 98 (399)
+-.||+|=..+++++|.+.|. ..=..|-+.| +|=|-.+++.|...|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999982 1123555554 688888888887766
No 30
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=37.94 E-value=11 Score=31.66 Aligned_cols=47 Identities=26% Similarity=0.380 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hHHhhhcCCCCc-c--HHHHHHhhhhhhhh
Q 015840 54 DLHERFIEAVNQLGGADKATP----KTVMKLMGIPGL-T--LYHLKSHLQKYRLS 101 (399)
Q Consensus 54 ELH~rFV~AV~qLGG~dkAtP----K~Il~lM~v~gL-T--~~hVkSHLQKYRl~ 101 (399)
+|+.-|.. |..+||.++.+- +.|.+.||++.- | ...++.|..||=+.
T Consensus 53 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 53 DLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred cHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 79988876 788999987665 358899998752 2 46789988888665
No 31
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=37.47 E-value=11 Score=31.65 Aligned_cols=47 Identities=17% Similarity=0.351 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCcc--HHHHHHhhhhhhhh
Q 015840 54 DLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLT--LYHLKSHLQKYRLS 101 (399)
Q Consensus 54 ELH~rFV~AV~qLGG~dkAtPK----~Il~lM~v~gLT--~~hVkSHLQKYRl~ 101 (399)
+|++-|.. |..+||.++.+-+ .|.+.|+++.-| -..|+.|..||=+.
T Consensus 52 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 52 DLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp CHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred cHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 78888875 7899999876643 588999998643 45688888887655
No 32
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=37.21 E-value=11 Score=31.35 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCcc--HHHHHHhhhhhhhh
Q 015840 54 DLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLT--LYHLKSHLQKYRLS 101 (399)
Q Consensus 54 ELH~rFV~AV~qLGG~dkAtPK----~Il~lM~v~gLT--~~hVkSHLQKYRl~ 101 (399)
+|++-|.. |..+||.++.+-+ .|.+.||++.-| ...|+.|..||=+.
T Consensus 41 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 41 DLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred cHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 78888875 7889999877653 688999997433 45688888888554
No 33
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.52 E-value=40 Score=24.80 Aligned_cols=45 Identities=13% Similarity=0.033 Sum_probs=33.8
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHh
Q 015840 44 DAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSH 94 (399)
Q Consensus 44 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSH 94 (399)
.++..-.||++=|+.|++|+.+.| . .=..|-.. ||+=|..+|.-|
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g--k--~w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP--K--NFGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST--T--CHHHHHHH--CTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC--C--CHHHHHHH--cCCCCHHHHHHH
Confidence 456678999999999999999998 2 22455544 567888887754
No 34
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.08 E-value=1.3e+02 Score=22.76 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=43.8
Q ss_pred CCCCccccCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhccc
Q 015840 35 GDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL 104 (399)
Q Consensus 35 ~d~~~v~s~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~~~ 104 (399)
++.+......+++|..+|++--.. ++.+...- ...++..+.++...-|||..+|+-=.|.-|...+.
T Consensus 8 ~~~~~~~~~~rr~Rt~ft~~Q~~~-Le~~F~~~--~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 74 (80)
T 2dmt_A 8 GEPGTKAKKGRRSRTVFTELQLMG-LEKRFEKQ--KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 74 (80)
T ss_dssp CCSCCCCCCCCCSCCCCCHHHHHH-HHHHHHHC--SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHhc--CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhc
Confidence 344444455677888899864333 33333332 35566666677677789999999999888876544
No 35
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=35.88 E-value=52 Score=26.74 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=38.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCchH---HhhhcCCCCccHHHHHHhhhhhhhhc
Q 015840 49 LKWTPDLHERFIEAVNQLGGADKATPKT---VMKLMGIPGLTLYHLKSHLQKYRLSK 102 (399)
Q Consensus 49 lrWT~ELH~rFV~AV~qLGG~dkAtPK~---Il~lM~v~gLT~~hVkSHLQKYRl~~ 102 (399)
-.||+|=...|++|+..+| . -+|.+ |-+.| ||=|..+|+.|.+.+.-.+
T Consensus 9 ~~WT~eEd~~L~~al~~~~-~--~~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYD-K--DTPDRWANVARAV--EGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSC-T--TCTTHHHHHHHHS--TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-C--CCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence 3699999999999999998 2 25653 54444 7999999999999875443
No 36
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=34.30 E-value=86 Score=22.06 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=35.7
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhh
Q 015840 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98 (399)
Q Consensus 48 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKY 98 (399)
|-.||+|=.+..+++|...|. ..=+.|.+.|+..|=|-.+++-+...|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999981 123567777765577888887665544
No 37
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=33.90 E-value=12 Score=29.79 Aligned_cols=46 Identities=26% Similarity=0.142 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hHHhhhcCCCCcc--HHHHHHhhhhhhh
Q 015840 54 DLHERFIEAVNQLGGADKATP----KTVMKLMGIPGLT--LYHLKSHLQKYRL 100 (399)
Q Consensus 54 ELH~rFV~AV~qLGG~dkAtP----K~Il~lM~v~gLT--~~hVkSHLQKYRl 100 (399)
+|+.-|.. |..+||.++.+- +.|.+.|+++.-+ ...++.|..||=+
T Consensus 37 DL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 37 DLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp CCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred cHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 67888765 788999987665 3588999986532 4567888887744
No 38
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=31.29 E-value=9.9 Score=30.90 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCc-c--HHHHHHhhhhhhhh
Q 015840 53 PDLHERFIEAVNQLGGADKATPK----TVMKLMGIPGL-T--LYHLKSHLQKYRLS 101 (399)
Q Consensus 53 ~ELH~rFV~AV~qLGG~dkAtPK----~Il~lM~v~gL-T--~~hVkSHLQKYRl~ 101 (399)
-+|+.-|.. |..+||.++.+-+ .|.+.||++.- | -..|++|..||=+.
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 478888875 7899999877653 58889998642 2 35688888888554
No 39
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=30.57 E-value=19 Score=31.04 Aligned_cols=47 Identities=23% Similarity=0.428 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hHHhhhcCCCCc-c--HHHHHHhhhhhhhh
Q 015840 54 DLHERFIEAVNQLGGADKATP----KTVMKLMGIPGL-T--LYHLKSHLQKYRLS 101 (399)
Q Consensus 54 ELH~rFV~AV~qLGG~dkAtP----K~Il~lM~v~gL-T--~~hVkSHLQKYRl~ 101 (399)
+|+.-|.. |..+||.++.+- +.|.+.||++.- | ...|+.|..||=+.
T Consensus 65 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 65 DLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred cHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 78988876 789999987765 358899999762 2 46788888888554
No 40
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=27.35 E-value=23 Score=30.09 Aligned_cols=48 Identities=29% Similarity=0.441 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCcc---HHHHHHhhhhhhhhc
Q 015840 54 DLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLT---LYHLKSHLQKYRLSK 102 (399)
Q Consensus 54 ELH~rFV~AV~qLGG~dkAtPK----~Il~lM~v~gLT---~~hVkSHLQKYRl~~ 102 (399)
+|+.-|. +|..+||.++.+-+ .|-..|++|... ...++.|..||=+.-
T Consensus 43 DL~~Ly~-~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 43 DLACFFR-LINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp CHHHHHH-HHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred cHHHHHH-HHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 7887774 67899999887764 588899997543 467899999887654
No 41
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=26.73 E-value=59 Score=24.79 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=33.8
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhh
Q 015840 44 DAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHL 95 (399)
Q Consensus 44 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHL 95 (399)
.++..-.||++=+..|.+|+...| -+ =..|-+. -|++-|..+|..+.
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG-KD---FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHT-TCSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHH-HcCCCCHHHHHHHH
Confidence 346677899999999999999998 22 2334331 16778888877665
No 42
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=25.86 E-value=23 Score=29.90 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCch----HHhhhcCCCCccHHHHHHhhhhhhhhc
Q 015840 54 DLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLTLYHLKSHLQKYRLSK 102 (399)
Q Consensus 54 ELH~rFV~AV~qLGG~dkAtPK----~Il~lM~v~gLT~~hVkSHLQKYRl~~ 102 (399)
+|++-|.. |..+||.++.+.+ .|.+.|+++. -..|+.|..||=+..
T Consensus 49 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 49 NLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLPY 98 (123)
T ss_dssp CTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHHHH
Confidence 78887765 8999999888763 5889999988 778999999887764
No 43
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.89 E-value=1.7e+02 Score=21.31 Aligned_cols=50 Identities=12% Similarity=0.216 Sum_probs=38.6
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCCchHHhhhcCCCCccHHHHHHhhhhhhhhc
Q 015840 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102 (399)
Q Consensus 46 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~ 102 (399)
..+-.||+|=..+++++|..+|- .=..|-+++ |=|-.+++.|.+.|--..
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~~~ 56 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLDKA 56 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhChH
Confidence 44667999999999999999982 335566644 689999999998875543
No 44
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=21.87 E-value=26 Score=30.88 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=8.7
Q ss_pred CCcccccCCCccCCCCCCCCCCccc--ccccCCCCCCCC
Q 015840 1 MYHHHQNQGKSMHSSSRMPIPTERH--LFLQGGSGPGDS 37 (399)
Q Consensus 1 my~~~~~q~~~~~~~sr~~~~~~r~--~~~~~g~~~~d~ 37 (399)
|.|||+|.......-.-.++...+. ..+.|++|+|-+
T Consensus 1 ~~~~~~~~~~~~~~l~~isl~i~~g~iigI~G~~GsGKS 39 (245)
T 2jeo_A 1 MHHHHHHSSGVDLGTENLYFQSMRPFLIGVSGGTASGKS 39 (245)
T ss_dssp ----------------------CCSEEEEEECSTTSSHH
T ss_pred CCccccccCCCceeecceeccCCCCEEEEEECCCCCCHH
Confidence 5666666444433333344444433 346788877643
No 45
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=20.94 E-value=2.6e+02 Score=24.52 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhccccCCccchHHHhhhhhHHH
Q 015840 145 HISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELV 213 (399)
Q Consensus 145 qItEALqmQmEVQRRLHEQLEVQRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~gleaak~eLseL~ 213 (399)
.|.||..+=-|-..||-.+++=.+.|.--+++=..|.+..|.+|.+.|-.+..-..-+.+.|.+|....
T Consensus 76 ~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 76 TVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477888888999999999999999999999999999999999999888765433333444455544443
Done!