Query 015842
Match_columns 399
No_of_seqs 202 out of 563
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 01:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4498 Uncharacterized conser 100.0 1.4E-28 3E-33 226.5 11.0 160 215-382 36-196 (197)
2 COG1225 Bcp Peroxiredoxin [Pos 99.9 6.4E-24 1.4E-28 192.2 14.1 151 182-384 3-156 (157)
3 cd02970 PRX_like2 Peroxiredoxi 99.9 5.1E-24 1.1E-28 183.6 12.8 138 217-365 11-149 (149)
4 PTZ00137 2-Cys peroxiredoxin; 99.8 7.8E-20 1.7E-24 177.7 16.1 153 181-385 66-226 (261)
5 TIGR03137 AhpC peroxiredoxin. 99.8 1.5E-19 3.3E-24 166.2 14.5 148 184-385 3-157 (187)
6 PRK13191 putative peroxiredoxi 99.8 3.5E-19 7.7E-24 168.1 15.6 150 182-385 6-162 (215)
7 PRK10382 alkyl hydroperoxide r 99.8 3.9E-19 8.5E-24 164.7 14.8 151 184-386 3-158 (187)
8 PRK15000 peroxidase; Provision 99.8 6.8E-19 1.5E-23 164.3 15.5 162 184-397 3-185 (200)
9 cd03016 PRX_1cys Peroxiredoxin 99.8 6.4E-19 1.4E-23 164.1 14.9 150 185-387 1-157 (203)
10 PRK13190 putative peroxiredoxi 99.8 7.6E-19 1.6E-23 163.8 15.1 147 183-385 2-155 (202)
11 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 3E-19 6.6E-24 149.6 11.0 123 185-361 1-124 (124)
12 cd03015 PRX_Typ2cys Peroxiredo 99.8 1.2E-18 2.5E-23 157.4 15.4 152 185-387 1-160 (173)
13 PRK00522 tpx lipid hydroperoxi 99.8 9.6E-19 2.1E-23 158.0 14.8 151 179-382 14-167 (167)
14 cd03018 PRX_AhpE_like Peroxire 99.8 7.2E-19 1.6E-23 152.7 13.4 143 184-379 2-149 (149)
15 PF13911 AhpC-TSA_2: AhpC/TSA 99.8 2.7E-19 5.8E-24 151.5 10.4 109 251-366 1-115 (115)
16 cd03013 PRX5_like Peroxiredoxi 99.8 7.3E-19 1.6E-23 157.5 12.8 139 185-369 1-144 (155)
17 PRK13599 putative peroxiredoxi 99.8 1.4E-18 3.1E-23 164.1 15.2 150 184-387 3-159 (215)
18 PRK13189 peroxiredoxin; Provis 99.8 1.8E-18 3.9E-23 164.0 15.4 151 183-387 9-166 (222)
19 cd03014 PRX_Atyp2cys Peroxired 99.8 2.4E-18 5.2E-23 149.2 13.4 140 184-379 1-143 (143)
20 PRK09437 bcp thioredoxin-depen 99.8 9.9E-18 2.1E-22 147.5 14.4 150 182-381 3-153 (154)
21 cd02971 PRX_family Peroxiredox 99.8 1E-17 2.2E-22 143.5 12.8 127 217-376 11-139 (140)
22 cd03017 PRX_BCP Peroxiredoxin 99.7 1.8E-17 3.8E-22 142.3 13.3 127 217-377 12-139 (140)
23 PTZ00253 tryparedoxin peroxida 99.7 1.2E-16 2.6E-21 148.2 15.1 154 182-386 5-166 (199)
24 PF08534 Redoxin: Redoxin; In 99.7 7.8E-17 1.7E-21 139.9 11.8 145 184-377 1-146 (146)
25 cd02969 PRX_like1 Peroxiredoxi 99.6 1.6E-14 3.5E-19 129.6 14.3 135 217-392 13-160 (171)
26 COG0450 AhpC Peroxiredoxin [Po 99.6 2E-14 4.3E-19 134.0 13.9 161 183-397 3-184 (194)
27 KOG0855 Alkyl hydroperoxide re 99.6 1.3E-14 2.8E-19 132.6 11.4 147 182-381 62-209 (211)
28 PRK03147 thiol-disulfide oxido 99.6 4.6E-14 9.9E-19 125.4 13.8 140 181-385 33-173 (173)
29 cd03012 TlpA_like_DipZ_like Tl 99.5 3.3E-14 7.2E-19 121.6 10.0 106 218-365 13-125 (126)
30 PLN02412 probable glutathione 99.5 1.1E-12 2.4E-17 118.7 14.3 136 217-386 18-166 (167)
31 TIGR02661 MauD methylamine deh 99.4 1E-12 2.3E-17 121.1 12.3 141 180-387 43-185 (189)
32 TIGR00385 dsbE periplasmic pro 99.4 1.6E-12 3.5E-17 117.7 13.2 134 182-383 33-170 (173)
33 PRK15412 thiol:disulfide inter 99.4 2E-12 4.4E-17 118.5 13.5 122 183-365 39-162 (185)
34 PTZ00056 glutathione peroxidas 99.4 5E-12 1.1E-16 118.0 13.9 135 217-383 28-177 (199)
35 PLN02399 phospholipid hydroper 99.4 6.2E-12 1.3E-16 121.0 12.6 153 177-383 67-233 (236)
36 PTZ00256 glutathione peroxidas 99.3 1.4E-11 2.9E-16 113.0 13.1 132 217-382 29-179 (183)
37 cd02968 SCO SCO (an acronym fo 99.3 5.8E-12 1.2E-16 108.3 9.4 119 217-363 11-141 (142)
38 cd03010 TlpA_like_DsbE TlpA-li 99.3 1.4E-11 3E-16 104.8 10.9 104 218-365 15-120 (127)
39 cd00340 GSH_Peroxidase Glutath 99.3 4.6E-12 9.9E-17 112.2 7.2 119 217-365 11-142 (152)
40 cd02967 mauD Methylamine utili 99.3 3E-11 6.4E-16 100.4 10.0 102 217-362 9-112 (114)
41 TIGR02540 gpx7 putative glutat 99.3 1.9E-11 4.1E-16 108.2 8.7 125 217-383 11-152 (153)
42 cd02966 TlpA_like_family TlpA- 99.2 5.7E-11 1.2E-15 95.3 10.2 106 217-363 8-115 (116)
43 KOG0854 Alkyl hydroperoxide re 99.2 2.9E-10 6.3E-15 105.1 14.8 142 219-388 22-172 (224)
44 cd03011 TlpA_like_ScsD_MtbDsbE 99.1 8.2E-10 1.8E-14 92.9 11.4 101 217-365 9-112 (123)
45 KOG0852 Alkyl hydroperoxide re 99.0 3.6E-09 7.8E-14 97.7 11.5 149 213-397 18-184 (196)
46 PRK14018 trifunctional thiored 99.0 6.4E-09 1.4E-13 110.2 13.4 150 171-382 15-171 (521)
47 cd03009 TryX_like_TryX_NRX Try 98.9 5.9E-09 1.3E-13 89.2 8.3 87 215-304 5-97 (131)
48 cd02964 TryX_like_family Trypa 98.8 2.8E-08 6.1E-13 85.8 8.4 63 219-283 8-72 (132)
49 cd03008 TryX_like_RdCVF Trypar 98.7 6.8E-08 1.5E-12 86.9 8.7 102 219-361 16-128 (146)
50 PRK13728 conjugal transfer pro 98.7 2.3E-07 5E-12 86.4 12.1 107 217-383 62-170 (181)
51 PLN02919 haloacid dehalogenase 98.6 3.8E-07 8.2E-12 104.0 13.1 122 217-380 408-535 (1057)
52 PRK10606 btuE putative glutath 98.6 2.8E-07 6E-12 85.7 9.8 82 217-302 14-111 (183)
53 TIGR01626 ytfJ_HI0045 conserve 98.5 4.3E-07 9.3E-12 84.8 9.8 119 218-383 49-182 (184)
54 PF13905 Thioredoxin_8: Thiore 98.2 9.9E-06 2.2E-10 65.3 9.4 75 230-304 1-80 (95)
55 COG2077 Tpx Peroxiredoxin [Pos 98.1 2.1E-05 4.6E-10 71.4 10.5 140 180-372 15-157 (158)
56 TIGR02740 TraF-like TraF-like 98.0 3.8E-05 8.2E-10 75.5 10.3 109 218-384 156-264 (271)
57 TIGR02738 TrbB type-F conjugat 97.9 9.6E-05 2.1E-09 66.9 10.3 48 217-273 43-90 (153)
58 PF05988 DUF899: Bacterial pro 97.8 0.00011 2.5E-09 70.0 10.0 85 220-305 57-148 (211)
59 PF13098 Thioredoxin_2: Thiore 97.5 0.00025 5.3E-09 58.7 6.2 45 229-275 5-52 (112)
60 cd02951 SoxW SoxW family; SoxW 97.3 0.0019 4.2E-08 54.9 9.3 110 225-386 8-121 (125)
61 cd02950 TxlA TRX-like protein 97.1 0.00082 1.8E-08 59.6 5.6 79 218-297 8-88 (142)
62 KOG2501 Thioredoxin, nucleored 96.9 0.00085 1.8E-08 61.5 4.1 71 211-282 15-87 (157)
63 PF02630 SCO1-SenC: SCO1/SenC; 96.9 0.0048 1E-07 56.6 8.6 64 217-283 41-111 (174)
64 COG4312 Uncharacterized protei 96.9 0.0017 3.7E-08 62.5 5.8 87 218-305 61-154 (247)
65 COG1999 Uncharacterized protei 96.8 0.025 5.4E-07 53.6 13.0 137 215-385 54-205 (207)
66 cd03005 PDI_a_ERp46 PDIa famil 96.4 0.0036 7.8E-08 50.5 4.0 73 223-296 10-84 (102)
67 cd02999 PDI_a_ERp44_like PDIa 96.4 0.0031 6.7E-08 52.5 3.4 66 227-295 16-82 (100)
68 PF13728 TraF: F plasmid trans 96.4 0.014 3.1E-07 55.6 8.1 48 222-274 114-161 (215)
69 cd02947 TRX_family TRX family; 96.2 0.015 3.3E-07 44.4 6.0 64 231-296 11-74 (93)
70 cd02949 TRX_NTR TRX domain, no 96.1 0.014 3E-07 47.6 6.0 73 225-298 8-80 (97)
71 cd02948 TRX_NDPK TRX domain, T 96.1 0.0054 1.2E-07 50.8 3.2 76 224-300 11-86 (102)
72 KOG0541 Alkyl hydroperoxide re 96.0 0.03 6.5E-07 51.6 8.1 87 218-305 32-123 (171)
73 PF00085 Thioredoxin: Thioredo 96.0 0.025 5.5E-07 45.1 6.7 69 229-299 17-85 (103)
74 cd02953 DsbDgamma DsbD gamma f 96.0 0.016 3.5E-07 47.6 5.7 67 227-294 8-81 (104)
75 PRK10996 thioredoxin 2; Provis 95.8 0.013 2.9E-07 51.6 4.8 76 221-297 43-118 (139)
76 cd02993 PDI_a_APS_reductase PD 95.8 0.02 4.4E-07 47.8 5.7 67 229-296 21-89 (109)
77 cd02961 PDI_a_family Protein D 95.8 0.017 3.6E-07 45.3 4.7 72 223-295 8-81 (101)
78 COG0678 AHP1 Peroxiredoxin [Po 95.7 0.016 3.4E-07 53.2 4.8 86 219-305 27-117 (165)
79 cd02959 ERp19 Endoplasmic reti 95.6 0.021 4.5E-07 49.1 5.1 71 228-300 18-91 (117)
80 cd02963 TRX_DnaJ TRX domain, D 95.6 0.035 7.5E-07 46.8 6.4 66 230-295 24-89 (111)
81 PRK09381 trxA thioredoxin; Pro 95.5 0.017 3.6E-07 47.8 3.9 70 229-300 21-90 (109)
82 cd01659 TRX_superfamily Thiore 95.4 0.046 9.9E-07 37.6 5.4 59 235-295 2-63 (69)
83 cd02997 PDI_a_PDIR PDIa family 95.4 0.017 3.6E-07 46.6 3.4 49 223-271 10-59 (104)
84 PTZ00051 thioredoxin; Provisio 95.4 0.014 3E-07 47.0 2.9 68 223-292 11-78 (98)
85 cd00166 SAM Sterile alpha moti 95.3 0.0081 1.8E-07 44.7 1.4 51 38-89 6-57 (63)
86 cd02956 ybbN ybbN protein fami 95.3 0.03 6.4E-07 45.0 4.7 68 230-298 12-79 (96)
87 cd03002 PDI_a_MPD1_like PDI fa 95.3 0.049 1.1E-06 44.6 6.0 66 230-296 18-85 (109)
88 TIGR01126 pdi_dom protein disu 95.2 0.028 6E-07 44.9 4.3 76 224-299 7-83 (102)
89 cd03000 PDI_a_TMX3 PDIa family 95.2 0.049 1.1E-06 44.9 5.9 64 230-293 15-80 (104)
90 cd02996 PDI_a_ERp44 PDIa famil 95.2 0.054 1.2E-06 44.8 6.0 39 223-261 11-49 (108)
91 COG0526 TrxA Thiol-disulfide i 95.1 0.02 4.4E-07 44.3 3.2 42 229-272 32-73 (127)
92 PF00536 SAM_1: SAM domain (St 95.1 0.011 2.4E-07 45.0 1.6 52 37-89 6-58 (64)
93 cd02984 TRX_PICOT TRX domain, 95.1 0.02 4.2E-07 45.9 3.1 65 230-296 15-79 (97)
94 TIGR01068 thioredoxin thioredo 95.0 0.033 7.1E-07 44.2 4.2 68 230-299 15-82 (101)
95 TIGR01295 PedC_BrcD bacterioci 95.0 0.024 5.2E-07 49.2 3.5 47 223-272 16-62 (122)
96 TIGR02739 TraF type-F conjugat 94.9 0.093 2E-06 51.7 7.8 50 220-274 142-191 (256)
97 cd03003 PDI_a_ERdj5_N PDIa fam 94.9 0.055 1.2E-06 44.1 5.2 50 225-275 13-62 (101)
98 PRK13703 conjugal pilus assemb 94.8 0.11 2.4E-06 50.9 8.1 48 222-274 137-184 (248)
99 cd02998 PDI_a_ERp38 PDIa famil 94.4 0.097 2.1E-06 42.0 5.5 64 231-295 20-85 (105)
100 cd03001 PDI_a_P5 PDIa family, 94.4 0.14 3E-06 41.2 6.4 63 231-295 20-82 (103)
101 cd02995 PDI_a_PDI_a'_C PDIa fa 94.2 0.13 2.8E-06 41.2 5.9 43 231-273 19-62 (104)
102 cd02985 TRX_CDSP32 TRX family, 94.0 0.16 3.5E-06 42.1 6.1 42 230-273 15-56 (103)
103 cd02994 PDI_a_TMX PDIa family, 93.7 0.2 4.2E-06 40.7 6.1 62 224-287 12-73 (101)
104 COG0386 BtuE Glutathione perox 93.7 0.6 1.3E-05 43.1 9.7 73 217-293 14-96 (162)
105 cd03004 PDI_a_ERdj5_C PDIa fam 93.7 0.17 3.7E-06 41.3 5.6 67 232-299 21-88 (104)
106 cd03006 PDI_a_EFP1_N PDIa fami 93.3 0.22 4.8E-06 42.8 5.9 66 227-293 26-93 (113)
107 PF13899 Thioredoxin_7: Thiore 92.9 0.19 4.2E-06 39.9 4.8 65 228-294 16-82 (82)
108 cd02962 TMX2 TMX2 family; comp 92.9 0.14 3.1E-06 46.4 4.4 52 231-282 48-99 (152)
109 TIGR01130 ER_PDI_fam protein d 92.3 0.25 5.4E-06 50.2 5.8 65 223-287 11-77 (462)
110 cd02975 PfPDO_like_N Pyrococcu 92.2 0.46 9.9E-06 40.4 6.4 66 228-295 20-85 (113)
111 cd02952 TRP14_like Human TRX-r 92.1 0.16 3.5E-06 44.4 3.5 42 229-271 21-68 (119)
112 TIGR00411 redox_disulf_1 small 91.9 0.38 8.3E-06 37.2 5.2 39 233-272 2-40 (82)
113 PF07647 SAM_2: SAM domain (St 91.9 0.064 1.4E-06 40.9 0.7 51 38-89 8-60 (66)
114 PTZ00102 disulphide isomerase; 91.5 0.35 7.6E-06 49.9 6.0 74 223-296 42-117 (477)
115 cd02955 SSP411 TRX domain, SSP 91.5 0.35 7.6E-06 42.4 5.1 77 225-301 10-97 (124)
116 cd02992 PDI_a_QSOX PDIa family 91.1 0.56 1.2E-05 39.8 5.8 40 231-270 20-61 (114)
117 PTZ00443 Thioredoxin domain-co 90.4 0.62 1.3E-05 45.0 6.1 65 229-295 52-116 (224)
118 cd02958 UAS UAS family; UAS is 90.4 0.44 9.6E-06 40.0 4.5 65 228-295 15-86 (114)
119 cd02989 Phd_like_TxnDC9 Phosdu 90.2 0.34 7.3E-06 41.2 3.6 78 225-304 17-94 (113)
120 PF04592 SelP_N: Selenoprotein 89.4 0.63 1.4E-05 45.5 5.2 77 230-306 26-110 (238)
121 smart00454 SAM Sterile alpha m 89.1 0.22 4.7E-06 37.2 1.5 52 37-88 7-59 (68)
122 TIGR02196 GlrX_YruB Glutaredox 88.7 1.5 3.3E-05 32.4 5.9 31 234-271 2-32 (74)
123 cd02960 AGR Anterior Gradient 88.3 0.53 1.1E-05 42.0 3.6 74 228-302 21-96 (130)
124 PF13778 DUF4174: Domain of un 88.2 3.9 8.4E-05 35.5 8.9 109 227-388 8-116 (118)
125 cd02973 TRX_GRX_like Thioredox 88.2 1.5 3.3E-05 32.9 5.6 34 234-269 3-36 (67)
126 PHA02278 thioredoxin-like prot 87.7 1.6 3.5E-05 36.9 6.0 49 223-272 7-55 (103)
127 cd03026 AhpF_NTD_C TRX-GRX-lik 87.5 1.4 3.1E-05 36.1 5.5 43 229-273 11-53 (89)
128 smart00594 UAS UAS domain. 87.5 1 2.3E-05 38.6 4.9 67 227-296 24-97 (122)
129 cd02965 HyaE HyaE family; HyaE 87.4 1.5 3.3E-05 38.0 5.9 33 228-260 26-59 (111)
130 PF00462 Glutaredoxin: Glutare 87.2 2.1 4.5E-05 31.8 5.8 33 234-273 1-33 (60)
131 PF00255 GSHPx: Glutathione pe 87.2 2.4 5.2E-05 36.6 6.9 72 217-292 10-91 (108)
132 PLN00410 U5 snRNP protein, DIM 87.1 1.1 2.3E-05 40.6 4.9 31 228-259 22-52 (142)
133 PLN02309 5'-adenylylsulfate re 86.8 1.1 2.5E-05 47.6 5.7 44 229-272 364-407 (457)
134 cd03028 GRX_PICOT_like Glutare 86.4 0.66 1.4E-05 37.9 2.9 32 224-256 2-37 (90)
135 TIGR00424 APS_reduc 5'-adenyly 86.3 1.5 3.2E-05 46.8 6.2 51 223-273 361-414 (463)
136 PTZ00102 disulphide isomerase; 85.8 1.2 2.7E-05 45.9 5.2 71 228-298 373-444 (477)
137 cd02976 NrdH NrdH-redoxin (Nrd 85.6 2.8 6.1E-05 30.9 5.8 55 234-295 2-58 (73)
138 TIGR00365 monothiol glutaredox 85.3 0.94 2E-05 37.8 3.4 32 223-255 5-40 (97)
139 TIGR02180 GRX_euk Glutaredoxin 84.8 2.6 5.7E-05 32.6 5.5 35 235-272 2-36 (84)
140 cd02957 Phd_like Phosducin (Ph 84.6 2.7 5.8E-05 35.3 5.8 41 231-273 25-65 (113)
141 PF05176 ATP-synt_10: ATP10 pr 84.2 4.3 9.3E-05 40.0 7.9 66 194-273 101-167 (252)
142 cd02986 DLP Dim1 family, Dim1- 84.1 2.8 6E-05 36.7 5.8 42 230-272 14-55 (114)
143 PRK00293 dipZ thiol:disulfide 83.9 2.3 5.1E-05 46.2 6.5 67 229-298 474-547 (571)
144 PRK10824 glutaredoxin-4; Provi 83.7 1.2 2.5E-05 39.0 3.3 32 223-255 8-43 (115)
145 cd03027 GRX_DEP Glutaredoxin ( 83.3 3.9 8.5E-05 31.5 5.9 30 234-270 3-32 (73)
146 PF00837 T4_deiodinase: Iodoth 82.8 14 0.00031 36.3 10.7 68 182-270 72-141 (237)
147 TIGR02187 GlrX_arch Glutaredox 81.7 4.2 9E-05 38.2 6.5 61 229-291 132-192 (215)
148 KOG2792 Putative cytochrome C 81.3 19 0.0004 36.1 10.9 58 214-273 125-186 (280)
149 cd02982 PDI_b'_family Protein 80.8 3.5 7.6E-05 33.1 5.0 43 229-273 12-54 (103)
150 TIGR02187 GlrX_arch Glutaredox 80.4 3.7 8.1E-05 38.5 5.7 66 228-295 18-87 (215)
151 KOG1651 Glutathione peroxidase 79.1 10 0.00023 35.5 8.0 74 217-292 23-105 (171)
152 TIGR02194 GlrX_NrdH Glutaredox 78.3 6.2 0.00013 30.4 5.5 55 234-295 1-56 (72)
153 cd02954 DIM1 Dim1 family; Dim1 78.3 2.8 6.1E-05 36.5 3.8 74 230-304 14-87 (114)
154 PHA03050 glutaredoxin; Provisi 76.5 2.6 5.5E-05 36.1 3.0 31 223-255 6-36 (108)
155 PF06110 DUF953: Eukaryotic pr 76.2 3 6.5E-05 36.7 3.4 43 229-272 19-67 (119)
156 TIGR02189 GlrX-like_plant Glut 75.9 2.5 5.4E-05 35.3 2.8 29 225-255 3-31 (99)
157 cd03418 GRX_GRXb_1_3_like Glut 75.7 9.9 0.00021 28.9 5.9 21 234-254 2-22 (75)
158 PRK01655 spxA transcriptional 73.9 4.6 9.9E-05 35.6 4.0 65 234-305 2-70 (131)
159 cd02987 Phd_like_Phd Phosducin 73.8 8.3 0.00018 35.6 5.9 59 232-293 85-144 (175)
160 TIGR00412 redox_disulf_2 small 73.5 11 0.00023 29.7 5.8 43 234-281 3-45 (76)
161 cd03023 DsbA_Com1_like DsbA fa 73.2 3.6 7.8E-05 35.0 3.2 28 229-256 4-31 (154)
162 KOG1752 Glutaredoxin and relat 73.1 4.6 0.0001 34.7 3.8 39 223-270 7-45 (104)
163 TIGR02190 GlrX-dom Glutaredoxi 72.9 3.4 7.3E-05 32.7 2.7 30 234-270 10-39 (79)
164 TIGR02183 GRXA Glutaredoxin, G 72.6 3.5 7.6E-05 33.3 2.8 23 234-256 2-24 (86)
165 cd02066 GRX_family Glutaredoxi 72.5 13 0.00028 27.0 5.7 22 235-256 3-24 (72)
166 cd02977 ArsC_family Arsenate R 72.4 4.9 0.00011 33.4 3.7 67 234-305 1-69 (105)
167 COG0695 GrxC Glutaredoxin and 72.3 14 0.00031 29.7 6.3 56 234-295 3-61 (80)
168 cd03419 GRX_GRXh_1_2_like Glut 72.2 3.5 7.6E-05 31.8 2.6 24 234-257 2-25 (82)
169 cd03036 ArsC_like Arsenate Red 71.9 4 8.6E-05 34.7 3.1 67 234-305 1-69 (111)
170 PRK11200 grxA glutaredoxin 1; 71.3 6.2 0.00014 31.4 4.0 35 234-270 3-37 (85)
171 cd03020 DsbA_DsbC_DsbG DsbA fa 71.1 6.9 0.00015 36.1 4.7 35 230-269 77-111 (197)
172 TIGR02181 GRX_bact Glutaredoxi 70.4 11 0.00023 29.3 5.0 22 234-255 1-22 (79)
173 cd03029 GRX_hybridPRX5 Glutare 69.2 4.7 0.0001 30.9 2.7 21 234-254 3-23 (72)
174 cd03065 PDI_b_Calsequestrin_N 69.1 11 0.00023 33.0 5.3 64 226-289 23-91 (120)
175 PF13462 Thioredoxin_4: Thiore 68.1 7.7 0.00017 33.5 4.2 42 228-269 10-52 (162)
176 PRK10329 glutaredoxin-like pro 67.8 19 0.00041 28.9 6.1 55 234-295 3-58 (81)
177 cd03032 ArsC_Spx Arsenate Redu 67.5 8 0.00017 33.0 4.0 65 234-305 2-70 (115)
178 TIGR01130 ER_PDI_fam protein d 67.4 9.2 0.0002 38.8 5.2 65 229-295 363-429 (462)
179 PRK10638 glutaredoxin 3; Provi 67.4 5.2 0.00011 31.7 2.7 22 234-255 4-25 (83)
180 PRK12559 transcriptional regul 66.5 10 0.00022 33.5 4.6 67 234-305 2-70 (131)
181 TIGR01617 arsC_related transcr 66.1 7.7 0.00017 33.1 3.7 65 234-305 1-69 (117)
182 PTZ00062 glutaredoxin; Provisi 65.9 4.8 0.0001 38.4 2.6 33 223-256 106-142 (204)
183 KOG4384 Uncharacterized SAM do 65.4 3 6.6E-05 43.0 1.2 77 5-81 217-300 (361)
184 cd02988 Phd_like_VIAF Phosduci 61.7 12 0.00027 35.0 4.5 38 232-271 104-141 (192)
185 TIGR02200 GlrX_actino Glutared 60.7 7 0.00015 29.5 2.2 20 235-254 3-22 (77)
186 PRK06184 hypothetical protein; 60.1 90 0.0019 32.9 11.1 93 217-383 401-494 (502)
187 PRK10877 protein disulfide iso 59.6 14 0.00031 35.5 4.6 37 229-269 106-142 (232)
188 PF14595 Thioredoxin_9: Thiore 56.2 16 0.00034 32.2 4.0 64 230-295 41-107 (129)
189 PRK13344 spxA transcriptional 54.2 20 0.00042 31.8 4.2 65 234-305 2-70 (132)
190 PRK11657 dsbG disulfide isomer 52.9 23 0.00051 34.5 4.9 38 229-269 116-153 (251)
191 cd03060 GST_N_Omega_like GST_N 52.7 27 0.00058 26.5 4.3 54 235-294 2-55 (71)
192 cd03019 DsbA_DsbA DsbA family, 51.0 18 0.00039 31.8 3.5 31 229-259 14-44 (178)
193 PRK08132 FAD-dependent oxidore 50.0 1.8E+02 0.0039 31.0 11.5 104 217-383 441-544 (547)
194 cd02972 DsbA_family DsbA famil 49.8 15 0.00034 28.0 2.6 34 234-268 1-34 (98)
195 PTZ00062 glutaredoxin; Provisi 49.5 21 0.00047 34.0 4.0 48 223-272 9-57 (204)
196 KOG0907 Thioredoxin [Posttrans 49.0 40 0.00086 28.8 5.2 42 230-273 21-62 (106)
197 PHA02125 thioredoxin-like prot 47.4 42 0.00091 26.0 4.7 21 234-254 2-22 (75)
198 PF13192 Thioredoxin_3: Thiore 47.0 11 0.00025 29.5 1.4 29 239-270 7-35 (76)
199 cd03041 GST_N_2GST_N GST_N fam 46.9 41 0.00088 26.1 4.6 54 234-294 2-57 (77)
200 PF05768 DUF836: Glutaredoxin- 44.8 87 0.0019 24.9 6.3 56 234-295 2-57 (81)
201 COG1651 DsbG Protein-disulfide 44.7 36 0.00078 32.1 4.7 40 215-256 71-110 (244)
202 cd00570 GST_N_family Glutathio 43.6 30 0.00066 24.4 3.2 58 235-299 2-61 (71)
203 cd03045 GST_N_Delta_Epsilon GS 41.1 27 0.00058 26.3 2.7 61 235-300 2-64 (74)
204 cd02979 PHOX_C FAD-dependent P 40.9 1.5E+02 0.0032 27.1 8.0 40 217-256 14-55 (167)
205 PF03190 Thioredox_DsbH: Prote 40.9 23 0.0005 32.9 2.6 70 229-299 37-116 (163)
206 KOG3425 Uncharacterized conser 40.8 36 0.00079 30.5 3.7 32 240-272 43-74 (128)
207 cd03051 GST_N_GTT2_like GST_N 40.2 60 0.0013 24.0 4.5 22 235-256 2-23 (74)
208 PRK06183 mhpA 3-(3-hydroxyphen 38.7 2.6E+02 0.0056 29.8 10.5 104 218-383 427-531 (538)
209 cd03035 ArsC_Yffb Arsenate Red 37.9 24 0.00052 29.9 2.1 66 234-305 1-67 (105)
210 PF14968 CCDC84: Coiled coil p 36.9 9.3 0.0002 39.3 -0.6 19 236-254 55-73 (336)
211 PRK08294 phenol 2-monooxygenas 35.4 2.2E+02 0.0047 31.5 9.5 40 217-256 479-520 (634)
212 PF07976 Phe_hydrox_dim: Pheno 33.3 91 0.002 28.6 5.3 90 217-306 46-166 (169)
213 KOG0910 Thioredoxin-like prote 33.3 97 0.0021 28.6 5.4 69 228-298 60-128 (150)
214 KOG0190 Protein disulfide isom 33.0 58 0.0012 35.4 4.5 74 222-295 34-110 (493)
215 cd03040 GST_N_mPGES2 GST_N fam 32.4 43 0.00094 25.5 2.6 23 234-256 2-24 (77)
216 cd03061 GST_N_CLIC GST_N famil 31.6 78 0.0017 26.5 4.2 54 239-300 19-74 (91)
217 cd03059 GST_N_SspA GST_N famil 30.7 63 0.0014 24.1 3.3 22 235-256 2-23 (73)
218 cd03053 GST_N_Phi GST_N family 30.1 53 0.0012 24.8 2.8 24 233-256 1-24 (76)
219 cd03052 GST_N_GDAP1 GST_N fami 30.0 50 0.0011 25.6 2.6 61 234-299 1-63 (73)
220 cd03055 GST_N_Omega GST_N fami 29.1 91 0.002 24.9 4.1 56 233-294 18-73 (89)
221 COG5561 Predicted metal-bindin 29.1 54 0.0012 28.0 2.8 30 240-270 5-34 (101)
222 PF11549 Sec31: Protein transp 28.3 21 0.00045 27.1 0.2 21 12-32 8-31 (51)
223 cd03056 GST_N_4 GST_N family, 27.9 61 0.0013 24.0 2.7 59 235-298 2-62 (73)
224 TIGR00995 3a0901s06TIC22 chlor 27.3 6.6E+02 0.014 25.4 12.1 132 215-390 89-221 (270)
225 PF06053 DUF929: Domain of unk 27.1 51 0.0011 32.7 2.7 39 223-261 51-89 (249)
226 TIGR03143 AhpF_homolog putativ 25.4 1.1E+02 0.0023 33.1 5.0 40 229-270 475-514 (555)
227 PRK15363 pathogenicity island 25.1 39 0.00085 31.2 1.4 35 31-78 5-40 (157)
228 cd03058 GST_N_Tau GST_N family 24.3 1.5E+02 0.0032 22.4 4.3 61 235-300 2-62 (74)
229 KOG1170 Diacylglycerol kinase 24.0 28 0.00061 39.9 0.3 83 35-122 999-1081(1099)
230 PF13417 GST_N_3: Glutathione 23.2 1.7E+02 0.0038 22.3 4.6 56 237-298 2-57 (75)
231 PF11948 DUF3465: Protein of u 22.7 94 0.002 28.1 3.3 33 338-371 87-119 (131)
232 TIGR03759 conj_TIGR03759 integ 22.5 1.9E+02 0.0042 27.9 5.5 55 227-287 106-161 (200)
233 PF10740 DUF2529: Protein of u 22.3 1.6E+02 0.0035 27.8 4.8 57 231-295 83-145 (172)
234 PF01323 DSBA: DSBA-like thior 22.1 85 0.0018 27.9 3.0 37 234-270 2-38 (193)
235 PHA01812 hypothetical protein 21.4 26 0.00056 29.9 -0.5 28 70-97 30-59 (122)
236 PF04134 DUF393: Protein of un 21.3 67 0.0014 26.7 2.0 29 238-269 3-31 (114)
237 cd03025 DsbA_FrnE_like DsbA fa 20.9 60 0.0013 29.0 1.8 33 234-267 3-35 (193)
238 TIGR00014 arsC arsenate reduct 20.9 90 0.002 26.6 2.7 64 234-305 1-70 (114)
239 PRK11869 2-oxoacid ferredoxin 20.6 75 0.0016 31.8 2.5 35 236-270 5-41 (280)
No 1
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=1.4e-28 Score=226.51 Aligned_cols=160 Identities=34% Similarity=0.672 Sum_probs=146.4
Q ss_pred ccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEec
Q 015842 215 KTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYD 293 (399)
Q Consensus 215 ~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsD 293 (399)
...|+.|++++||+++++||+|+|||+|..||+++++|.++++-++++|+.||+|+|+...+ +..|+. .+|..+||.|
T Consensus 36 ~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~-~~~f~~q~~f~gevylD 114 (197)
T KOG4498|consen 36 DSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQ-FEDFWDQTYFSGEVYLD 114 (197)
T ss_pred hhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceee-cchhhcccCcceeEEEc
Confidence 44699999999999999999999999999999999999999999999999999999976654 678885 7899999999
Q ss_pred cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCH
Q 015842 294 QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPL 373 (399)
Q Consensus 294 p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~ 373 (399)
|++.+|+.++++++ .++++ .+.++.+.++++..|+.+|++||++++||+++|.+|+ .|.|.|++++++||+++
T Consensus 115 ~~~~~Y~~le~k~~-----~~g~l-~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~-~il~~h~dk~~gD~~~i 187 (197)
T KOG4498|consen 115 PHRGFYKPLEFKRA-----EMGFL-RPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGK-KILFIHVDKETGDHVPI 187 (197)
T ss_pred Cccceechhhhhcc-----ccccc-ccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCC-eEEEEEecCCCCCCcCH
Confidence 99999999999752 24554 4888999999999999999999999999999999997 89999999999999999
Q ss_pred HHHHHHHHh
Q 015842 374 AEVIEICTQ 382 (399)
Q Consensus 374 eeVLaAl~~ 382 (399)
++||++++.
T Consensus 188 ~~Vl~v~~~ 196 (197)
T KOG4498|consen 188 DSVLQVVGK 196 (197)
T ss_pred HHHHHHhhc
Confidence 999999874
No 2
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.4e-24 Score=192.18 Aligned_cols=151 Identities=19% Similarity=0.155 Sum_probs=128.7
Q ss_pred CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842 182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 261 (399)
Q Consensus 182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a 261 (399)
.+.+|+.||+|.|++. +|++|+|+++.. ++|||.||+..++|.|..|++++++.+++|++
T Consensus 3 ~l~~G~~aPdF~Lp~~-------------------~g~~v~Lsd~~G-k~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~ 62 (157)
T COG1225 3 MLKVGDKAPDFELPDQ-------------------DGETVSLSDLRG-KPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK 62 (157)
T ss_pred cCCCCCcCCCeEeecC-------------------CCCEEehHHhcC-CcEEEEECCCCCCCcchHHHHHHHHHHHHHHh
Confidence 4688999999999888 588999999755 49999999999999999999999999999999
Q ss_pred cCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 015842 262 LGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG 340 (399)
Q Consensus 262 lGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~G 340 (399)
+|+.+++||++++.+ ++.|.+ +.++|++|||++++++++||+...... .|
T Consensus 63 ~~a~V~GIS~Ds~~~-~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~----------------------------~g 113 (157)
T COG1225 63 LGAVVLGISPDSPKS-HKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKM----------------------------YG 113 (157)
T ss_pred CCCEEEEEeCCCHHH-HHHHHHHhCCCceeeECCcHHHHHHhCccccccc----------------------------Cc
Confidence 999999999999986 899996 899999999999999999999531000 01
Q ss_pred C--CcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842 341 E--GEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ 384 (399)
Q Consensus 341 D--~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~ 384 (399)
. ....++|||||++| +|+|.|++....+|+ ++||++|+++.
T Consensus 114 k~~~~~~R~TfvId~dG-~I~~~~~~v~~~~h~--~~vl~~l~~l~ 156 (157)
T COG1225 114 KEYMGIERSTFVIDPDG-KIRYVWRKVKVKGHA--DEVLAALKKLA 156 (157)
T ss_pred cccccccceEEEECCCC-eEEEEecCCCCcccH--HHHHHHHHHhc
Confidence 1 13457999999996 999999665555555 99999998874
No 3
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.91 E-value=5.1e-24 Score=183.56 Aligned_cols=138 Identities=28% Similarity=0.410 Sum_probs=111.1
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccc
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG 295 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~ 295 (399)
+|+++++++++.++++||+|||+.|||+|+.++.+|++.++++.+.|+++|+|+.+..+. ...|.+ ..++|++++|++
T Consensus 11 ~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~-~~~~~~~~~~~~p~~~D~~ 89 (149)
T cd02970 11 GGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK-LEAFDKGKFLPFPVYADPD 89 (149)
T ss_pred CCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH-HHHHHHhcCCCCeEEECCc
Confidence 499999999988899999999999999999999999999999999999999999988765 556664 678999999999
Q ss_pred hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecC
Q 015842 296 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIER 365 (399)
Q Consensus 296 r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~ 365 (399)
+.+|++||+... .... .. +..+. ..+..+..++..|+++++||+||||++| +|+|.|+++
T Consensus 90 ~~~~~~~g~~~~---~~~~--~~-~~~~~---~~~~~~~~~~~~~~~~~~p~~fvid~~g-~i~~~~~~~ 149 (149)
T cd02970 90 RKLYRALGLVRS---LPWS--NT-PRALW---KNAAIGFRGNDEGDGLQLPGVFVIGPDG-TILFAHVDR 149 (149)
T ss_pred hhHHHHcCceec---CcHH--HH-HHHHh---hCcccccccCCCCcccccceEEEECCCC-eEEEEecCC
Confidence 999999999631 1111 11 22111 1222233445678889999999999996 999999874
No 4
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.83 E-value=7.8e-20 Score=177.67 Aligned_cols=153 Identities=13% Similarity=0.085 Sum_probs=125.2
Q ss_pred CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842 181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD 260 (399)
Q Consensus 181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~ 260 (399)
..+.+|+.+|.|.+++.. +.+++.++++++++++++||+||++.|||.|..|+.+|++.+++|+
T Consensus 66 ~~~~vGd~aPdF~l~~~~----------------~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~ 129 (261)
T PTZ00137 66 TSSLVGKLMPSFKGTALL----------------NDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFE 129 (261)
T ss_pred ccccCCCCCCCCEeeccc----------------CCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 345899999977766531 1135679999987888999999999999999999999999999999
Q ss_pred hcCCeEEEEecCChhhHHhhhcC--------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhc
Q 015842 261 ALGIQLFAVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTL 332 (399)
Q Consensus 261 alGV~LVaIspE~~e~~ik~F~~--------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~ 332 (399)
+.|+++|+||.+++.. .+.|.+ ..++||+++|+++++.++||+.. +
T Consensus 130 ~~gv~VigIS~Ds~~~-h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~-------------~------------ 183 (261)
T PTZ00137 130 ERGVKVLGVSVDSPFS-HKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLR-------------D------------ 183 (261)
T ss_pred HCCCEEEEEECCCHHH-HHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCC-------------c------------
Confidence 9999999999988743 455542 36889999999999999999831 0
Q ss_pred CCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842 333 GVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD 385 (399)
Q Consensus 333 G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~ 385 (399)
.++.+|++||||++| +|+|.++......+ +++|+|++++++|.
T Consensus 184 --------~g~a~R~tFIID~dG-~I~~~~~~~~~~gr-~v~eiLr~l~alq~ 226 (261)
T PTZ00137 184 --------EGFSHRASVLVDKAG-VVKHVAVYDLGLGR-SVDETLRLFDAVQF 226 (261)
T ss_pred --------CCceecEEEEECCCC-EEEEEEEeCCCCCC-CHHHHHHHHHHhch
Confidence 123578999999996 99999976554444 89999999999875
No 5
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.82 E-value=1.5e-19 Score=166.20 Aligned_cols=148 Identities=13% Similarity=0.057 Sum_probs=121.2
Q ss_pred CCCCCCCcccccCccccccchhhhcccccccccCCC--ceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842 184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTP--PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 261 (399)
Q Consensus 184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~--~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a 261 (399)
.+|+.+|.|.+++. + +|+ .++++++ +++++||+|||+.|||.|+.++.+|++.+++|++
T Consensus 3 ~~G~~aP~f~l~~~-----~-------------~g~~~~~sl~d~-~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~ 63 (187)
T TIGR03137 3 LINTEIKPFKATAY-----H-------------NGEFVEVTDEDV-KGKWSVFFFYPADFTFVCPTELEDLADKYAELKK 63 (187)
T ss_pred ccCCcCCCcEeeec-----c-------------CCceeEecHHHH-CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh
Confidence 57889997776653 1 254 6888886 6679999999999999999999999999999999
Q ss_pred cCCeEEEEecCChhhHHhhhcC-----CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842 262 LGIQLFAVLHEYIESEVKDFWP-----RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ 336 (399)
Q Consensus 262 lGV~LVaIspE~~e~~ik~F~~-----~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g 336 (399)
.|+++|+|+.+.+.. .+.|.+ ..++|++++|++..+.++||+.. +.
T Consensus 64 ~gv~vi~VS~D~~~~-~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~-------------~~--------------- 114 (187)
T TIGR03137 64 LGVEVYSVSTDTHFV-HKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLI-------------EE--------------- 114 (187)
T ss_pred cCCcEEEEeCCCHHH-HHHHHhhhhhccCcceeEEECCccHHHHHhCCcc-------------cC---------------
Confidence 999999999888754 566653 25899999999999999999841 00
Q ss_pred ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842 337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD 385 (399)
Q Consensus 337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~ 385 (399)
.+...|++||||++| +|+|.|+......+ +.++||++++.++-
T Consensus 115 ----~g~~~p~tfiID~~G-~I~~~~~~~~~~~~-~~~~ll~~l~~~~~ 157 (187)
T TIGR03137 115 ----AGLADRGTFVIDPEG-VIQAVEITDNGIGR-DASELLRKIKAAQY 157 (187)
T ss_pred ----CCceeeEEEEECCCC-EEEEEEEeCCCCCC-CHHHHHHHHHHhhh
Confidence 012468999999996 99999998877776 89999999887754
No 6
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.81 E-value=3.5e-19 Score=168.12 Aligned_cols=150 Identities=15% Similarity=0.042 Sum_probs=122.8
Q ss_pred CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842 182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 261 (399)
Q Consensus 182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a 261 (399)
.+.+|+.+|.|.+++. +|+ +.+.+.++++++||+||++.|||.|..|+.+|++.+++|++
T Consensus 6 ~~~iG~~aPdF~l~~~-------------------~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~ 65 (215)
T PRK13191 6 IPLIGEKFPEMEVITT-------------------HGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK 65 (215)
T ss_pred cccCCCcCCCCEeecC-------------------CCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 5678999997776654 365 66766567778999999999999999999999999999999
Q ss_pred cCCeEEEEecCChhhHHhhhcC-------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCC
Q 015842 262 LGIQLFAVLHEYIESEVKDFWP-------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGV 334 (399)
Q Consensus 262 lGV~LVaIspE~~e~~ik~F~~-------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~ 334 (399)
+|++||+||.++... .+.|.. ..++|++++|+++++.++||+.. +.
T Consensus 66 ~g~~VigvS~Ds~~~-h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~-------------~~------------- 118 (215)
T PRK13191 66 LNTELIGLSVDSNIS-HIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIH-------------AE------------- 118 (215)
T ss_pred CCCEEEEEECCCHHH-HHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcc-------------cc-------------
Confidence 999999999988764 444431 36899999999999999999841 10
Q ss_pred ccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842 335 EQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD 385 (399)
Q Consensus 335 ~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~ 385 (399)
+.+..+|++||||++| +|++.++......| +++|+|++|++++.
T Consensus 119 -----~~~~~~r~tfIID~~G-~Ir~~~~~~~~~gr-~~~eilr~l~alq~ 162 (215)
T PRK13191 119 -----SSTATVRAVFIVDDKG-TVRLILYYPMEIGR-NIDEILRAIRALQL 162 (215)
T ss_pred -----cCCceeEEEEEECCCC-EEEEEEecCCCCCC-CHHHHHHHHHHhhh
Confidence 1123579999999996 99999988866666 99999999999874
No 7
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.81 E-value=3.9e-19 Score=164.73 Aligned_cols=151 Identities=9% Similarity=0.024 Sum_probs=122.9
Q ss_pred CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 015842 184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG 263 (399)
Q Consensus 184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG 263 (399)
..|.++|.|..+.. .+.+...++|+++ +++++||+||+..|||.|..|+.+|++.+++|++.|
T Consensus 3 ~~~~~~p~f~~~~~----------------~~g~~~~v~L~d~-~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g 65 (187)
T PRK10382 3 LINTKIKPFKNQAF----------------KNGEFIEVTEKDT-EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG 65 (187)
T ss_pred ccCCcCCCcEEEEE----------------eCCcceEEEHHHh-CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC
Confidence 46888886665443 1223567888886 566999999999999999999999999999999999
Q ss_pred CeEEEEecCChhhHHhhhcC-----CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcccc
Q 015842 264 IQLFAVLHEYIESEVKDFWP-----RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNF 338 (399)
Q Consensus 264 V~LVaIspE~~e~~ik~F~~-----~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~ 338 (399)
+++|+||.+++.. .+.|.+ ..++|++++|++..+.++||+.. +.
T Consensus 66 ~~vigIS~D~~~~-~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~-------------~~----------------- 114 (187)
T PRK10382 66 VDVYSVSTDTHFT-HKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMR-------------ED----------------- 114 (187)
T ss_pred CEEEEEeCCCHHH-HHHHHHhhccccCCceeEEEcCchHHHHHcCCCc-------------cc-----------------
Confidence 9999999998865 677763 36899999999999999999831 10
Q ss_pred CCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842 339 KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ 386 (399)
Q Consensus 339 ~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~ 386 (399)
.++..|++||||++| +|+|.|+......+ +++++|++|++++-.
T Consensus 115 --~g~~~r~tfIID~~G-~I~~~~~~~~~~~~-~~~eil~~l~alq~~ 158 (187)
T PRK10382 115 --EGLADRATFVVDPQG-IIQAIEVTAEGIGR-DASDLLRKIKAAQYV 158 (187)
T ss_pred --CCceeeEEEEECCCC-EEEEEEEeCCCCCC-CHHHHHHHHHhhhhH
Confidence 112358999999996 99999998755555 899999999998853
No 8
>PRK15000 peroxidase; Provisional
Probab=99.80 E-value=6.8e-19 Score=164.31 Aligned_cols=162 Identities=16% Similarity=0.129 Sum_probs=126.4
Q ss_pred CCCCCCCcccccCccccccchhhhcccccccccCCCc---eechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842 184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPP---MKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD 260 (399)
Q Consensus 184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~---VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~ 260 (399)
.+|+.+|.|.+++. . .+|+. +++++.++++++||+||++.|||.|..|+.+|++.+++|+
T Consensus 3 ~vg~~aPdF~~~~~-----~------------~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~ 65 (200)
T PRK15000 3 LVTRQAPDFTAAAV-----L------------GSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQ 65 (200)
T ss_pred cCCCcCCCCEeecc-----c------------CCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 47889997766554 1 13554 4555555788999999999999999999999999999999
Q ss_pred hcCCeEEEEecCChhhHHhhhcC-----C---CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhc
Q 015842 261 ALGIQLFAVLHEYIESEVKDFWP-----R---YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTL 332 (399)
Q Consensus 261 alGV~LVaIspE~~e~~ik~F~~-----~---~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~ 332 (399)
+.|++||+||.++... .+.|.+ . .++|++++|+++.+.++||+.. +.
T Consensus 66 ~~g~~vigvS~D~~~~-~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~-------------~~----------- 120 (200)
T PRK15000 66 KRGVEVVGVSFDSEFV-HNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEH-------------PD----------- 120 (200)
T ss_pred HCCCEEEEEECCCHHH-HHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCcc-------------CC-----------
Confidence 9999999999988753 444431 2 3699999999999999999841 10
Q ss_pred CCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh----------cccccccccc
Q 015842 333 GVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ----------RDQSETIKTS 397 (399)
Q Consensus 333 G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~----------~~~~~~~~~~ 397 (399)
.++.+|++||||++| +|++.+.+...-.| ++++||+++++++-.. ++|.++|+.+
T Consensus 121 --------~g~~~r~tfiID~~G-~I~~~~~~~~~~gr-~~~eilr~l~al~~~~~~~~~~p~~w~~g~~~~~~~ 185 (200)
T PRK15000 121 --------EGVALRGSFLIDANG-IVRHQVVNDLPLGR-NIDEMLRMVDALQFHEEHGDVCPAQWEKGKEGMNAS 185 (200)
T ss_pred --------CCcEEeEEEEECCCC-EEEEEEecCCCCCC-CHHHHHHHHHHhhhHHhcCCCcCCCCCCCCceeccC
Confidence 123479999999996 99999998766666 8999999999887422 5667777654
No 9
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.80 E-value=6.4e-19 Score=164.15 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=119.8
Q ss_pred CCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC
Q 015842 185 NEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI 264 (399)
Q Consensus 185 ~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV 264 (399)
.|+.+|.|.+++. .| .+++.++..++++||+||+..|||.|+.++.+|++.+++|++.|+
T Consensus 1 vG~~aP~F~~~~~-------------------~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv 60 (203)
T cd03016 1 LGDTAPNFEADTT-------------------HG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNV 60 (203)
T ss_pred CcCCCCCeEEecC-------------------CC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCC
Confidence 3678887766554 25 588999755468899999999999999999999999999999999
Q ss_pred eEEEEecCChhhHHhhhc-------CCCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccc
Q 015842 265 QLFAVLHEYIESEVKDFW-------PRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQN 337 (399)
Q Consensus 265 ~LVaIspE~~e~~ik~F~-------~~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn 337 (399)
++|+|+.++... .+.|. +..++|++++|+++.++++||+.. +.
T Consensus 61 ~vigvS~D~~~~-~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~-------------~~---------------- 110 (203)
T cd03016 61 KLIGLSVDSVES-HIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMID-------------PD---------------- 110 (203)
T ss_pred EEEEEECCCHHH-HHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCcc-------------cc----------------
Confidence 999999988754 33333 247899999999999999999841 11
Q ss_pred cCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842 338 FKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ 387 (399)
Q Consensus 338 ~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~ 387 (399)
.|.....+++||||++| +|+|.++.+....+ +.+++++++++++...
T Consensus 111 -~~~~~~~r~~fiID~~G-~I~~~~~~~~~~gr-~~~ell~~l~~lq~~~ 157 (203)
T cd03016 111 -AGSTLTVRAVFIIDPDK-KIRLILYYPATTGR-NFDEILRVVDALQLTD 157 (203)
T ss_pred -CCCCceeeEEEEECCCC-eEEEEEecCCCCCC-CHHHHHHHHHHHhhHh
Confidence 02234568999999996 99999987755554 7999999999987543
No 10
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.80 E-value=7.6e-19 Score=163.82 Aligned_cols=147 Identities=17% Similarity=0.151 Sum_probs=119.3
Q ss_pred CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842 183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL 262 (399)
Q Consensus 183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al 262 (399)
+..|+.+|.|.+++. .| .++++++ +++++||+||++.|||+|+.|+.+|++.+++|++.
T Consensus 2 ~~vG~~aP~F~~~~~-------------------~g-~v~l~d~-~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~ 60 (202)
T PRK13190 2 VKLGQKAPDFTVNTT-------------------KG-PIDLSKY-KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL 60 (202)
T ss_pred CCCCCCCCCcEEecC-------------------CC-cEeHHHh-CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 467899997777644 25 6899996 66678888999999999999999999999999999
Q ss_pred CCeEEEEecCChhhHHhhhc----C-C--CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCc
Q 015842 263 GIQLFAVLHEYIESEVKDFW----P-R--YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVE 335 (399)
Q Consensus 263 GV~LVaIspE~~e~~ik~F~----~-~--~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~ 335 (399)
|+++|+|+.++... .++|. + . .++|++++|+++.++++||+.. +.
T Consensus 61 ~~~vi~vS~D~~~~-~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~-------------~~-------------- 112 (202)
T PRK13190 61 GVELVGLSVDSIYS-HIAWLRDIEERFGIKIPFPVIADIDKELAREYNLID-------------EN-------------- 112 (202)
T ss_pred CCEEEEEeCCCHHH-HHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCcc-------------cc--------------
Confidence 99999999987753 33332 2 2 3689999999999999999841 10
Q ss_pred cccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842 336 QNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD 385 (399)
Q Consensus 336 gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~ 385 (399)
++..+|++||||++| +|+|.+.......| +++|+|++++.++.
T Consensus 113 -----~g~~~p~~fiId~~G-~I~~~~~~~~~~gr-~~~ellr~l~~l~~ 155 (202)
T PRK13190 113 -----SGATVRGVFIIDPNQ-IVRWMIYYPAETGR-NIDEIIRITKALQV 155 (202)
T ss_pred -----CCcEEeEEEEECCCC-EEEEEEEeCCCCCC-CHHHHHHHHHHhhh
Confidence 112479999999996 99999987766655 89999999999875
No 11
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.80 E-value=3e-19 Score=149.63 Aligned_cols=123 Identities=20% Similarity=0.257 Sum_probs=107.4
Q ss_pred CCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC
Q 015842 185 NEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI 264 (399)
Q Consensus 185 ~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV 264 (399)
+|+++|.+.+++. +|+.++++++ +++|+||.||+..|||.|..++.+|++++.++++.|+
T Consensus 1 vG~~~P~f~l~~~-------------------~g~~~~l~~l-~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~ 60 (124)
T PF00578_consen 1 VGDKAPDFTLTDS-------------------DGKTVSLSDL-KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGV 60 (124)
T ss_dssp TTSBGGCEEEETT-------------------TSEEEEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTE
T ss_pred CcCCCCCcEeECC-------------------CCCEEEHHHH-CCCcEEEEEeCccCccccccchhHHHHHhhhhccceE
Confidence 5889997777665 4899999999 7789999999999999999999999999999999999
Q ss_pred eEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCc
Q 015842 265 QLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGE 343 (399)
Q Consensus 265 ~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~ 343 (399)
++|+|+.+..+. ++.|.+ ..++|++++|++..++++||+.. . . ...
T Consensus 61 ~vi~is~d~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-----------~-~--------------------~~~ 107 (124)
T PF00578_consen 61 QVIGISTDDPEE-IKQFLEEYGLPFPVLSDPDGELAKAFGIED-----------E-K--------------------DTL 107 (124)
T ss_dssp EEEEEESSSHHH-HHHHHHHHTCSSEEEEETTSHHHHHTTCEE-----------T-T--------------------TSE
T ss_pred Eeeecccccccc-hhhhhhhhccccccccCcchHHHHHcCCcc-----------c-c--------------------CCc
Confidence 999999988874 788775 66999999999999999999852 1 0 235
Q ss_pred ccceEEEEecCCCcEEEE
Q 015842 344 IKGGLFIVGRGRSGIAYQ 361 (399)
Q Consensus 344 qLGGtFVId~gGg~I~ya 361 (399)
+.|++||||++| +|+|.
T Consensus 108 ~~p~~~lid~~g-~I~~~ 124 (124)
T PF00578_consen 108 ALPAVFLIDPDG-KIRYA 124 (124)
T ss_dssp ESEEEEEEETTS-BEEEE
T ss_pred eEeEEEEECCCC-EEEeC
Confidence 689999999996 89985
No 12
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.80 E-value=1.2e-18 Score=157.37 Aligned_cols=152 Identities=15% Similarity=0.094 Sum_probs=120.9
Q ss_pred CCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC
Q 015842 185 NEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI 264 (399)
Q Consensus 185 ~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV 264 (399)
+|+.+|.|.++++ .+ +.+|+.++++++ +++++||.|+|+.|||.|..++..|++++++|.+.|+
T Consensus 1 vG~~aP~f~~~~~-----~g----------~~~~~~~~l~~~-~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v 64 (173)
T cd03015 1 VGKKAPDFKATAV-----VP----------NGEFKEISLSDY-KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNA 64 (173)
T ss_pred CCCcCCCCEeecc-----cC----------CCCceEEehHHh-CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCC
Confidence 4788997777666 10 012479999997 5679999999999999999999999999999999999
Q ss_pred eEEEEecCChhhHHhhhcC--------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842 265 QLFAVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ 336 (399)
Q Consensus 265 ~LVaIspE~~e~~ik~F~~--------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g 336 (399)
++|+|+.+..+. .+.|.+ +.++|++++|++..++++||+.. .+
T Consensus 65 ~vv~Is~d~~~~-~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~------------~~---------------- 115 (173)
T cd03015 65 EVLGVSTDSHFS-HLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLD------------EE---------------- 115 (173)
T ss_pred EEEEEecCCHHH-HHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCcc------------cc----------------
Confidence 999999877543 344543 35899999999999999999851 01
Q ss_pred ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842 337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ 387 (399)
Q Consensus 337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~ 387 (399)
.++.+|.+||||++| +|+|.|+......+ +.++||++|+.++..-
T Consensus 116 ----~~~~~p~~~lID~~G-~I~~~~~~~~~~~~-~~~~il~~l~~~~~~~ 160 (173)
T cd03015 116 ----EGVALRGTFIIDPEG-IIRHITVNDLPVGR-SVDETLRVLDALQFVE 160 (173)
T ss_pred ----CCceeeEEEEECCCC-eEEEEEecCCCCCC-CHHHHHHHHHHhhhhh
Confidence 023468999999996 99999998766554 7899999998875443
No 13
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.80 E-value=9.6e-19 Score=158.04 Aligned_cols=151 Identities=11% Similarity=0.120 Sum_probs=124.9
Q ss_pred CCCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccch
Q 015842 179 IQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI 258 (399)
Q Consensus 179 ~~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pe 258 (399)
+..++.+|+.+|.|.|++. +|+.++++++ +++++||.||+.+|||.|+.++.+|++.+++
T Consensus 14 ~~~~~~~G~~~P~f~l~~~-------------------~g~~v~l~~~-~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~ 73 (167)
T PRK00522 14 AGSLPQVGDKAPDFTLVAN-------------------DLSDVSLADF-AGKRKVLNIFPSIDTGVCATSVRKFNQEAAE 73 (167)
T ss_pred eCCCCCCCCCCCCeEEEcC-------------------CCcEEehHHh-CCCEEEEEEEcCCCCCccHHHHHHHHHHHHH
Confidence 3557788999998877664 4899999996 6779999999999999999999999999988
Q ss_pred hhhcCCeEEEEecCChhhHHhhhcC-CCCC-ceeEec-cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCc
Q 015842 259 FDALGIQLFAVLHEYIESEVKDFWP-RYWG-GVVVYD-QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVE 335 (399)
Q Consensus 259 f~alGV~LVaIspE~~e~~ik~F~~-~~l~-f~VLsD-p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~ 335 (399)
++ |+++|+|+.+.+.. +++|.+ ..++ +++++| +++.+.++||+.. .|.
T Consensus 74 ~~--~~~vv~vs~D~~~~-~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~------------~~~-------------- 124 (167)
T PRK00522 74 LD--NTVVLCISADLPFA-QKRFCGAEGLENVITLSDFRDHSFGKAYGVAI------------AEG-------------- 124 (167)
T ss_pred cC--CcEEEEEeCCCHHH-HHHHHHhCCCCCceEeecCCccHHHHHhCCee------------ccc--------------
Confidence 83 99999999988764 678885 5566 799999 5679999999841 010
Q ss_pred cccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHh
Q 015842 336 QNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQ 382 (399)
Q Consensus 336 gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~ 382 (399)
...++..+++||||++| +|+|.|+..+..+.++++++|+++++
T Consensus 125 ---~~~g~~~r~tfvId~~G-~I~~~~~~~~~~~~~~~~~~l~~l~~ 167 (167)
T PRK00522 125 ---PLKGLLARAVFVLDENN-KVVYSELVPEITNEPDYDAALAALKA 167 (167)
T ss_pred ---ccCCceeeEEEEECCCC-eEEEEEECCCcCCCCCHHHHHHHhhC
Confidence 01234568999999996 99999999999999999999999863
No 14
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.80 E-value=7.2e-19 Score=152.67 Aligned_cols=143 Identities=17% Similarity=0.182 Sum_probs=119.2
Q ss_pred CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 015842 184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG 263 (399)
Q Consensus 184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG 263 (399)
++|+.+|.+.+.+. +|+.++++++..++++||.|+|..|||.|..++.+|+++++++.+.|
T Consensus 2 ~~G~~~p~~~l~~~-------------------~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~ 62 (149)
T cd03018 2 EVGDKAPDFELPDQ-------------------NGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG 62 (149)
T ss_pred CCCCcCCCcEecCC-------------------CCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC
Confidence 56888886655544 48999999985558999999999999999999999999999999999
Q ss_pred CeEEEEecCChhhHHhhhcC-CCCCceeEeccc--hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 015842 264 IQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG--MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG 340 (399)
Q Consensus 264 V~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~--r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~G 340 (399)
+++|+|+.+.++. ++.|.+ ..++|++++|++ +++++.||+.. . +.
T Consensus 63 v~vi~vs~d~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~-----------~-~~------------------- 110 (149)
T cd03018 63 AEVLGISVDSPFS-LRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD-----------E-DL------------------- 110 (149)
T ss_pred CEEEEecCCCHHH-HHHHHHhcCCCceEecCCCchhHHHHHhCCcc-----------c-cC-------------------
Confidence 9999999988765 788875 678999999988 99999998851 0 00
Q ss_pred CCcccceEEEEecCCCcEEEEEecCC--CCCCCCHHHHHHH
Q 015842 341 EGEIKGGLFIVGRGRSGIAYQFIERN--FGDWAPLAEVIEI 379 (399)
Q Consensus 341 D~~qLGGtFVId~gGg~I~yah~d~d--~gDrad~eeVLaA 379 (399)
+...|.+||||++| +|+|.|...+ ..+.+++.++|+|
T Consensus 111 -~~~~~~~~lid~~G-~v~~~~~~~~~~~~~~~~~~~~~~~ 149 (149)
T cd03018 111 -GVAERAVFVIDRDG-IIRYAWVSDDGEPRDLPDYDEALDA 149 (149)
T ss_pred -CCccceEEEECCCC-EEEEEEecCCcccccchhHHHHhhC
Confidence 12356899999996 9999999999 7888888887764
No 15
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=99.80 E-value=2.7e-19 Score=151.47 Aligned_cols=109 Identities=28% Similarity=0.421 Sum_probs=88.7
Q ss_pred HHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHH---HHHH-
Q 015842 251 QLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPR---AIAN- 325 (399)
Q Consensus 251 ~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~---v~~~- 325 (399)
+|++.+|+|+++||+||+|++++++. ++.|++ .+|||+||+||++++|++||+.+.....+ ..+. .+..
T Consensus 1 ~L~~~~~~l~~~gv~lv~I~~g~~~~-~~~f~~~~~~p~~ly~D~~~~lY~~lg~~~~~~~~~-----~~~~~~~~~~~~ 74 (115)
T PF13911_consen 1 QLSRRKPELEAAGVKLVVIGCGSPEG-IEKFCELTGFPFPLYVDPERKLYKALGLKRGLKWSL-----LPPALWSGLSNI 74 (115)
T ss_pred ChhHhHHHHHHcCCeEEEEEcCCHHH-HHHHHhccCCCCcEEEeCcHHHHHHhCCccccccCC-----CchHHHHHHHHH
Confidence 47788999999999999999999965 899995 88999999999999999999986333322 2222 2332
Q ss_pred HHHHHhcCCcccc-CCCCcccceEEEEecCCCcEEEEEecCC
Q 015842 326 YKRARTLGVEQNF-KGEGEIKGGLFIVGRGRSGIAYQFIERN 366 (399)
Q Consensus 326 ~~rA~~~G~~gn~-~GD~~qLGGtFVId~gGg~I~yah~d~d 366 (399)
+.+++..++.++. .|+.+|+||+||||++| +|+|+|++++
T Consensus 75 ~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g-~v~~~hr~~~ 115 (115)
T PF13911_consen 75 VQSAKNGGIPGNKDQGDGWQLGGTFVFDPGG-KVLYEHRDRH 115 (115)
T ss_pred HHHHHHcCCCCcccCCCceecCeEEEEcCCC-eEEEEEecCC
Confidence 3445555788888 99999999999999996 9999999975
No 16
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.79 E-value=7.3e-19 Score=157.50 Aligned_cols=139 Identities=19% Similarity=0.152 Sum_probs=112.7
Q ss_pred CCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHH-HHHHHhccchhhhcC
Q 015842 185 NEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAE-AHQLYAKKPIFDALG 263 (399)
Q Consensus 185 ~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~e-l~~L~e~~pef~alG 263 (399)
+|+++|.|.|++.. ..+|++|+|+++++++++||+||++.|||.|+.| +.+|++.+++|+++|
T Consensus 1 vG~~aPdF~l~~~~----------------~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g 64 (155)
T cd03013 1 VGDKLPNVTLFEYV----------------PGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG 64 (155)
T ss_pred CCCcCCCeEeeeec----------------cCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC
Confidence 58899988887651 1148899999987888999999999999999999 999999999999999
Q ss_pred C-eEEEEecCChhhHHhhhcC-CCC--CceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC
Q 015842 264 I-QLFAVLHEYIESEVKDFWP-RYW--GGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK 339 (399)
Q Consensus 264 V-~LVaIspE~~e~~ik~F~~-~~l--~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~ 339 (399)
+ .+++||.+++.. .+.|.+ ..+ +|++++|+++++.++||+.. +... .|.
T Consensus 65 ~~~V~~iS~D~~~~-~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~-------------~~~~--------~~~----- 117 (155)
T cd03013 65 VDEVICVSVNDPFV-MKAWGKALGAKDKIRFLADGNGEFTKALGLTL-------------DLSA--------AGG----- 117 (155)
T ss_pred CCEEEEEECCCHHH-HHHHHHhhCCCCcEEEEECCCHHHHHHcCCCc-------------cccc--------cCC-----
Confidence 9 599999999875 788885 555 89999999999999999952 0000 010
Q ss_pred CCCcccceEEEEecCCCcEEEEEecCCCCC
Q 015842 340 GEGEIKGGLFIVGRGRSGIAYQFIERNFGD 369 (399)
Q Consensus 340 GD~~qLGGtFVId~gGg~I~yah~d~d~gD 369 (399)
..+...++|||| +| +|+|.|+..+..+
T Consensus 118 -~~~~~R~~fiId-~g-~I~~~~~~~~~~~ 144 (155)
T cd03013 118 -GIRSKRYALIVD-DG-KVKYLFVEEDPGD 144 (155)
T ss_pred -cceeeeEEEEEC-CC-EEEEEEEecCCCC
Confidence 123467999999 55 9999999998744
No 17
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.79 E-value=1.4e-18 Score=164.11 Aligned_cols=150 Identities=15% Similarity=0.062 Sum_probs=120.5
Q ss_pred CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 015842 184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG 263 (399)
Q Consensus 184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG 263 (399)
..|+.+|.|.+++. +|+.+.++++ +++++||+||++.|||.|+.|+.+|++.+++|++.|
T Consensus 3 ~~Gd~aPdF~l~t~-------------------~G~~~~~~~~-~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g 62 (215)
T PRK13599 3 LLGEKFPSMEVVTT-------------------QGVKRLPEDY-AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN 62 (215)
T ss_pred CCCCCCCCCEeECC-------------------CCcEecHHHH-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC
Confidence 67899997766544 3777666665 667889999999999999999999999999999999
Q ss_pred CeEEEEecCChhhHHhhhc-------CCCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842 264 IQLFAVLHEYIESEVKDFW-------PRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ 336 (399)
Q Consensus 264 V~LVaIspE~~e~~ik~F~-------~~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g 336 (399)
++||+||.++... .+.|. ...++|+|++|+++.+.++||+.. +. .
T Consensus 63 v~vigIS~D~~~~-~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~-------------~~------------~-- 114 (215)
T PRK13599 63 TELIGLSVDQVFS-HIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIH-------------PG------------K-- 114 (215)
T ss_pred CEEEEEeCCCHHH-HHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCc-------------cC------------C--
Confidence 9999999998754 44443 136899999999999999999841 11 0
Q ss_pred ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842 337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ 387 (399)
Q Consensus 337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~ 387 (399)
| ....|++||||++| +|++.++.+....+ ++++||+++++++...
T Consensus 115 ---~-~~~~R~tfIID~dG-~Ir~~~~~p~~~gr-~~~eilr~l~~lq~~~ 159 (215)
T PRK13599 115 ---G-TNTVRAVFIVDDKG-TIRLIMYYPQEVGR-NVDEILRALKALQTAD 159 (215)
T ss_pred ---C-CceeeEEEEECCCC-EEEEEEEcCCCCCC-CHHHHHHHHHHhhhhh
Confidence 1 12479999999996 99999986655555 8999999999986543
No 18
>PRK13189 peroxiredoxin; Provisional
Probab=99.79 E-value=1.8e-18 Score=163.98 Aligned_cols=151 Identities=16% Similarity=0.126 Sum_probs=121.8
Q ss_pred CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842 183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL 262 (399)
Q Consensus 183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al 262 (399)
+.+|+.+|.|.+++. .| .+++.+.++++++||+||+..|||.|..|+.+|++.+++|++.
T Consensus 9 ~~vG~~aPdF~~~~~-------------------~g-~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~ 68 (222)
T PRK13189 9 PLIGDKFPEFEVKTT-------------------HG-PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL 68 (222)
T ss_pred ccCCCcCCCcEeEcC-------------------CC-CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 468999997777654 25 4778887777789999999999999999999999999999999
Q ss_pred CCeEEEEecCChhhHHhhhcC-------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCc
Q 015842 263 GIQLFAVLHEYIESEVKDFWP-------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVE 335 (399)
Q Consensus 263 GV~LVaIspE~~e~~ik~F~~-------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~ 335 (399)
|++||+||.++... ...|.+ ..++|++++|+++.+.++||+.. +.
T Consensus 69 ~v~VigvS~D~~~~-h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~-------------~~-------------- 120 (222)
T PRK13189 69 NTELIGLSIDQVFS-HIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMIS-------------PG-------------- 120 (222)
T ss_pred CCEEEEEECCCHHH-HHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCc-------------cc--------------
Confidence 99999999988754 444432 24799999999999999999841 10
Q ss_pred cccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842 336 QNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ 387 (399)
Q Consensus 336 gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~ 387 (399)
+.+..+|++||||++| +|++.++......+ +.+++|+++++++...
T Consensus 121 ----~~~~~~r~tfIID~~G-~Ir~~~~~~~~~gr-~~~eilr~l~alq~~~ 166 (222)
T PRK13189 121 ----KGTNTVRAVFIIDPKG-IIRAILYYPQEVGR-NMDEILRLVKALQTSD 166 (222)
T ss_pred ----cCCCceeEEEEECCCC-eEEEEEecCCCCCC-CHHHHHHHHHHhhhHh
Confidence 0012478999999996 99999988766666 7899999999886543
No 19
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.78 E-value=2.4e-18 Score=149.22 Aligned_cols=140 Identities=11% Similarity=0.094 Sum_probs=116.1
Q ss_pred CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 015842 184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG 263 (399)
Q Consensus 184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG 263 (399)
++|+.+|.|.|++. +|+.++++++ +++++||.|++..|||.|+.++..|++.+.+++ |
T Consensus 1 ~~G~~aP~f~l~~~-------------------~g~~~~l~~~-~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~ 58 (143)
T cd03014 1 KVGDKAPDFTLVTS-------------------DLSEVSLADF-AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--N 58 (143)
T ss_pred CCCCCCCCcEEECC-------------------CCcEEeHHHh-CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--C
Confidence 36888997777665 4899999996 677999999999999999999999999988873 9
Q ss_pred CeEEEEecCChhhHHhhhcC-CC-CCceeEeccc-hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 015842 264 IQLFAVLHEYIESEVKDFWP-RY-WGGVVVYDQG-MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG 340 (399)
Q Consensus 264 V~LVaIspE~~e~~ik~F~~-~~-l~f~VLsDp~-r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~G 340 (399)
+.+|+|+.+.... +++|.+ .. ..|++++|+. +++.++||+.. +.
T Consensus 59 ~~vi~Is~d~~~~-~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~-------------~~------------------- 105 (143)
T cd03014 59 TVVLTISADLPFA-QKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI-------------KD------------------- 105 (143)
T ss_pred CEEEEEECCCHHH-HHHHHHhcCCCCceEeecCcccHHHHHhCCee-------------cc-------------------
Confidence 9999999988654 677775 33 3789999997 99999999841 10
Q ss_pred CCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHH
Q 015842 341 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEI 379 (399)
Q Consensus 341 D~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaA 379 (399)
.+...|++||||++| +|+|.|+..+..+.++++++|++
T Consensus 106 ~~~~~~~~~iid~~G-~I~~~~~~~~~~~~~~~~~~~~~ 143 (143)
T cd03014 106 LGLLARAVFVIDENG-KVIYVELVPEITDEPDYEAALAA 143 (143)
T ss_pred CCccceEEEEEcCCC-eEEEEEECCCcccCCCHHHHhhC
Confidence 123358999999996 99999999999999999999863
No 20
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.76 E-value=9.9e-18 Score=147.54 Aligned_cols=150 Identities=11% Similarity=0.157 Sum_probs=120.0
Q ss_pred CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842 182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 261 (399)
Q Consensus 182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a 261 (399)
....|+.+|.+.+++. +|+.++++++ +++++||.|++..|||.|+.++..|.+...++.+
T Consensus 3 ~~~~g~~~p~f~l~~~-------------------~G~~~~l~~~-~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~ 62 (154)
T PRK09437 3 PLKAGDIAPKFSLPDQ-------------------DGEQVSLTDF-QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK 62 (154)
T ss_pred cCCCCCcCCCcEeeCC-------------------CCCEEeHHHh-CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH
Confidence 4567889996666655 4899999995 7789999999999999999999999999999999
Q ss_pred cCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 015842 262 LGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG 340 (399)
Q Consensus 262 lGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~G 340 (399)
.|+++|+|+.++.+. ++.|.+ ..++|++++|++..++++||+... +. . .|.. +
T Consensus 63 ~~v~vi~Is~d~~~~-~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~------------~~-~--------~~~~--~-- 116 (154)
T PRK09437 63 AGVVVLGISTDKPEK-LSRFAEKELLNFTLLSDEDHQVAEQFGVWGE------------KK-F--------MGKT--Y-- 116 (154)
T ss_pred CCCEEEEEcCCCHHH-HHHHHHHhCCCCeEEECCCchHHHHhCCCcc------------cc-c--------cccc--c--
Confidence 999999999988765 777775 678999999999999999998410 10 0 0000 0
Q ss_pred CCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 015842 341 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICT 381 (399)
Q Consensus 341 D~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~ 381 (399)
....|.+||||++| +|++.|.+....++ .+++|++++
T Consensus 117 -~~~~~~~~lid~~G-~i~~~~~g~~~~~~--~~~~~~~~~ 153 (154)
T PRK09437 117 -DGIHRISFLIDADG-KIEHVFDKFKTSNH--HDVVLDYLK 153 (154)
T ss_pred -cCcceEEEEECCCC-EEEEEEcCCCcchh--HHHHHHHHh
Confidence 01246899999996 99999988766654 788888875
No 21
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.76 E-value=1e-17 Score=143.49 Aligned_cols=127 Identities=18% Similarity=0.108 Sum_probs=107.4
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-C-CCCceeEecc
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-R-YWGGVVVYDQ 294 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~-~l~f~VLsDp 294 (399)
+|++++++++ +++++||+|++..|||+|..++..|.++++++++.|+++|+|+.++++. ++.|.+ . .++|++++|+
T Consensus 11 ~g~~~~l~~~-~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~-~~~~~~~~~~~~~~~l~D~ 88 (140)
T cd02971 11 DGGEVSLSDF-KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFS-HKAWAEKEGGLNFPLLSDP 88 (140)
T ss_pred CCcEEehHHh-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHhcccCCCceEEECC
Confidence 4899999998 6789999999999999999999999999999999999999999988764 777775 4 7899999999
Q ss_pred chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHH
Q 015842 295 GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLA 374 (399)
Q Consensus 295 ~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~e 374 (399)
+..++++||+.. .|. .++....|.+||||++| +|+|.|.+.+. ++...+
T Consensus 89 ~~~~~~~~g~~~------------~~~-----------------~~~~~~~p~~~lid~~g-~i~~~~~~~~~-~~~~~~ 137 (140)
T cd02971 89 DGEFAKAYGVLI------------EKS-----------------AGGGLAARATFIIDPDG-KIRYVEVEPLP-TGRNAE 137 (140)
T ss_pred ChHHHHHcCCcc------------ccc-----------------cccCceeEEEEEECCCC-cEEEEEecCCC-CCcChH
Confidence 999999999852 011 03445679999999996 99999999998 555554
Q ss_pred HH
Q 015842 375 EV 376 (399)
Q Consensus 375 eV 376 (399)
.+
T Consensus 138 ~~ 139 (140)
T cd02971 138 EL 139 (140)
T ss_pred hh
Confidence 43
No 22
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.75 E-value=1.8e-17 Score=142.25 Aligned_cols=127 Identities=20% Similarity=0.154 Sum_probs=105.4
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccc
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG 295 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~ 295 (399)
+|+.++++++ +++++||.|++..|||.|..++.+|++.++++++.|+++|+|+.++++. +++|.+ ..++|++++|++
T Consensus 12 ~g~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~-~~~~~~~~~~~~~~l~D~~ 89 (140)
T cd03017 12 DGETVSLSDL-RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVES-HAKFAEKYGLPFPLLSDPD 89 (140)
T ss_pred CCCEEeHHHh-CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCCCceEEECCc
Confidence 4999999997 5789999999999999999999999999999999999999999988865 788875 678999999999
Q ss_pred hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHH
Q 015842 296 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAE 375 (399)
Q Consensus 296 r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~ee 375 (399)
+.++++||+.. .. . .|.....|.+||||++| +|++.|.+...+ -++++
T Consensus 90 ~~~~~~~gv~~----------~~-~------------------~~~~~~~p~~~lid~~G-~v~~~~~g~~~~--~~~~~ 137 (140)
T cd03017 90 GKLAKAYGVWG----------EK-K------------------KKYMGIERSTFLIDPDG-KIVKVWRKVKPK--GHAEE 137 (140)
T ss_pred cHHHHHhCCcc----------cc-c------------------cccCCcceeEEEECCCC-EEEEEEecCCcc--chHHH
Confidence 99999999852 00 0 12334568999999996 999999877643 34455
Q ss_pred HH
Q 015842 376 VI 377 (399)
Q Consensus 376 VL 377 (399)
+|
T Consensus 138 ~~ 139 (140)
T cd03017 138 VL 139 (140)
T ss_pred Hh
Confidence 54
No 23
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.72 E-value=1.2e-16 Score=148.20 Aligned_cols=154 Identities=13% Similarity=0.065 Sum_probs=122.0
Q ss_pred CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842 182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 261 (399)
Q Consensus 182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a 261 (399)
+...|+.+|.|.+++. +. +.+|++++|+++ +++++||+|++..|||.|..++.+|++.+.+|++
T Consensus 5 ~~~~G~~aPdF~~~~~-~~--------------~~~~~~v~l~d~-~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~ 68 (199)
T PTZ00253 5 DAKINHPAPSFEEVAL-MP--------------NGSFKKISLSSY-KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE 68 (199)
T ss_pred ccccCCcCCCCEeecc-cc--------------CCCCcEEeHHHH-CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 3568999997766543 11 124789999996 6679999999999999999999999999999999
Q ss_pred cCCeEEEEecCChhhHHhhhc--C------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcC
Q 015842 262 LGIQLFAVLHEYIESEVKDFW--P------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLG 333 (399)
Q Consensus 262 lGV~LVaIspE~~e~~ik~F~--~------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G 333 (399)
.|+++|+|+.++... ...|. . +.++|++++|+++++.++||+.. +
T Consensus 69 ~g~~vv~IS~d~~~~-~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~-------------~------------- 121 (199)
T PTZ00253 69 LNCEVLACSMDSEYA-HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLE-------------E------------- 121 (199)
T ss_pred cCCEEEEEeCCCHHH-HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcc-------------c-------------
Confidence 999999999987754 33332 1 14799999999999999999831 0
Q ss_pred CccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842 334 VEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ 386 (399)
Q Consensus 334 ~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~ 386 (399)
.++...|++||||++| +|++.+++... ...+++++|++++.++..
T Consensus 122 ------~~g~~~r~~fiID~~G-~i~~~~~~~~~-~~r~~~e~l~~l~a~~~~ 166 (199)
T PTZ00253 122 ------EQGVAYRGLFIIDPKG-MLRQITVNDMP-VGRNVEEVLRLLEAFQFV 166 (199)
T ss_pred ------CCCceEEEEEEECCCC-EEEEEEecCCC-CCCCHHHHHHHHHhhhhH
Confidence 0123458999999996 89999988655 445899999999988753
No 24
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.71 E-value=7.8e-17 Score=139.94 Aligned_cols=145 Identities=18% Similarity=0.245 Sum_probs=115.2
Q ss_pred CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 015842 184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG 263 (399)
Q Consensus 184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG 263 (399)
++|+.+|.+.+++. ..+|+++++++ ++++++||.|+...|||.|+.++..|.++...+...|
T Consensus 1 k~G~~~P~~~~~~~-----------------~~~g~~~~l~~-~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~ 62 (146)
T PF08534_consen 1 KVGDKAPDFSLKDL-----------------DLDGKPVSLSD-FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG 62 (146)
T ss_dssp STTSB--CCEEEEE-----------------ETTSEEEEGGG-GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCeEEEee-----------------cCCCCEecHHH-hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc
Confidence 57889995555442 12599999999 7888999999999999999999999999988889999
Q ss_pred CeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCC
Q 015842 264 IQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEG 342 (399)
Q Consensus 264 V~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~ 342 (399)
+.+|+|+.+.... +.+|.+ ...+|+++.|++..+.++||+.- .. + .+.+
T Consensus 63 v~~v~v~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----------~~-~------------------~~~~ 112 (146)
T PF08534_consen 63 VDVVGVSSDDDPP-VREFLKKYGINFPVLSDPDGALAKALGVTI----------ME-D------------------PGNG 112 (146)
T ss_dssp CEEEEEEESSSHH-HHHHHHHTTTTSEEEEETTSHHHHHTTCEE----------EC-C------------------TTTT
T ss_pred eEEEEecccCCHH-HHHHHHhhCCCceEEechHHHHHHHhCCcc----------cc-c------------------cccC
Confidence 9999999877665 777775 77899999999999999999741 00 0 0122
Q ss_pred cccceEEEEecCCCcEEEEEecCCCCCCCCHHHHH
Q 015842 343 EIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVI 377 (399)
Q Consensus 343 ~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVL 377 (399)
+.+|.+||||++| +|+|.|...+..+..++++||
T Consensus 113 ~~~P~~~lId~~G-~V~~~~~g~~~~~~~~~~~~l 146 (146)
T PF08534_consen 113 FGIPTTFLIDKDG-KVVYRHVGPDPDEESDLEAVL 146 (146)
T ss_dssp SSSSEEEEEETTS-BEEEEEESSBTTSHHSHHHHH
T ss_pred CeecEEEEEECCC-EEEEEEeCCCCCCCCChhhcC
Confidence 5689999999997 999999999883366666654
No 25
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.60 E-value=1.6e-14 Score=129.57 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=106.6
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC--------hhhHHhhhcC-CCCC
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY--------IESEVKDFWP-RYWG 287 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~--------~e~~ik~F~~-~~l~ 287 (399)
+|+++++.++-+++++||.|+ ..|||.|..++..|.++.+++++.++++|+|+.+. ++ .++.|.+ ..++
T Consensus 13 ~g~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~-~~~~~~~~~~~~ 90 (171)
T cd02969 13 DGKTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPE-NMKAKAKEHGYP 90 (171)
T ss_pred CCCEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHH-HHHHHHHHCCCC
Confidence 488999999756555555555 89999999999999999999999999999999754 33 3666664 6788
Q ss_pred ceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCC
Q 015842 288 GVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNF 367 (399)
Q Consensus 288 f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~ 367 (399)
|++++|+++.+.+.||+.. .|.+||||++| +|+|.+...+.
T Consensus 91 ~~~l~D~~~~~~~~~~v~~--------------------------------------~P~~~lid~~G-~v~~~~~~~~~ 131 (171)
T cd02969 91 FPYLLDETQEVAKAYGAAC--------------------------------------TPDFFLFDPDG-KLVYRGRIDDS 131 (171)
T ss_pred ceEEECCchHHHHHcCCCc--------------------------------------CCcEEEECCCC-eEEEeecccCC
Confidence 9999999999999888731 25799999996 89988754432
Q ss_pred ----CCCCCHHHHHHHHHhhhhhhccccc
Q 015842 368 ----GDWAPLAEVIEICTQLQDQQRDQSE 392 (399)
Q Consensus 368 ----gDrad~eeVLaAl~~l~~~~~~~~~ 392 (399)
..++..+++.++++++....+..-+
T Consensus 132 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 160 (171)
T cd02969 132 RPGNDPPVTGRDLRAALDALLAGKPVPVP 160 (171)
T ss_pred cccccccccHHHHHHHHHHHHcCCCCCcc
Confidence 3578889999999988766554433
No 26
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2e-14 Score=133.99 Aligned_cols=161 Identities=19% Similarity=0.180 Sum_probs=129.2
Q ss_pred CCCCCCCCcccccCccccccchhhhcccccccccCC---CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842 183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKT---PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF 259 (399)
Q Consensus 183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G---~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef 259 (399)
+..|+++|.|..+.+ + .| .+|++.+... +.+||+||.-...|.|-.|+.++++.+++|
T Consensus 3 ~lIg~~aP~F~~~a~----------------~--~~~~~~~i~l~d~~g-kw~VLff~P~DFTfVCpTEi~af~~~y~eF 63 (194)
T COG0450 3 SLIGKKAPDFTANAV----------------L--GGEIFEEITLSDYYG-KWVVLFFYPADFTFVCPTEIIAFAKRYEEF 63 (194)
T ss_pred cccCCcCCCcEEEEE----------------e--cCceeeEEechhhcC-cEEEEEeccCCCCccCcchHHHHHhhhHHH
Confidence 457888996665443 1 24 3999999777 899999999999999999999999999999
Q ss_pred hhcCCeEEEEecCChhhHHhhhcC-----C---CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHh
Q 015842 260 DALGIQLFAVLHEYIESEVKDFWP-----R---YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRART 331 (399)
Q Consensus 260 ~alGV~LVaIspE~~e~~ik~F~~-----~---~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~ 331 (399)
+++|+++++||-++... +..|.. . .++||+++|+++++.++||+- .|.
T Consensus 64 ~~~g~eVigvS~Ds~fs-H~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl-------------~~~---------- 119 (194)
T COG0450 64 QKRGVEVIGVSTDSVFS-HKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVL-------------HPE---------- 119 (194)
T ss_pred HHcCCEEEEEecCcHHH-HHHHHhcHHhcCCccceecceEEcCchhHHHHcCCc-------------ccC----------
Confidence 99999999999988765 666662 2 389999999999999999994 122
Q ss_pred cCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh----------cccccccccc
Q 015842 332 LGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ----------RDQSETIKTS 397 (399)
Q Consensus 332 ~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~----------~~~~~~~~~~ 397 (399)
.+..+.|+||||++| .|++..++...-.| +++|+|+++++++-.. ++|.+||+.+
T Consensus 120 ---------~g~a~R~~FIIDp~g-~ir~~~v~~~~iGR-n~dEilR~idAlq~~~~hg~vcPanW~~G~~~i~p~ 184 (194)
T COG0450 120 ---------EGLALRGTFIIDPDG-VIRHILVNPLTIGR-NVDEILRVIDALQFVAKHGEVCPANWKPGDKTIKPS 184 (194)
T ss_pred ---------CCcceeEEEEECCCC-eEEEEEEecCCCCc-CHHHHHHHHHHHHHHHHhCCCccCCCCCCCccccCC
Confidence 112467999999996 99999998877444 5699999999887422 6677777655
No 27
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.3e-14 Score=132.64 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=123.9
Q ss_pred CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842 182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 261 (399)
Q Consensus 182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a 261 (399)
-..+|+.+|+++|+|- +|.+|+|.++.+++|+|++||...-.|.|..|++.+++.+++|++
T Consensus 62 ~v~~Gd~iPD~tL~de-------------------dg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kk 122 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDE-------------------DGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKK 122 (211)
T ss_pred eeecCCcCCCcccccC-------------------CCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhh
Confidence 4578999997777665 699999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 015842 262 LGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG 340 (399)
Q Consensus 262 lGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~G 340 (399)
.|+.+++++-++... .+.|.. .+|||.+||||.+++.+.||..+. .+
T Consensus 123 a~aeV~GlS~D~s~s-qKaF~sKqnlPYhLLSDpk~e~ik~lGa~k~----p~--------------------------- 170 (211)
T KOG0855|consen 123 AGAEVIGLSGDDSAS-QKAFASKQNLPYHLLSDPKNEVIKDLGAPKD----PF--------------------------- 170 (211)
T ss_pred cCceEEeeccCchHH-HHHhhhhccCCeeeecCcchhHHHHhCCCCC----CC---------------------------
Confidence 999999999988764 788985 889999999999999999998631 11
Q ss_pred CCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 015842 341 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICT 381 (399)
Q Consensus 341 D~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~ 381 (399)
.++.....||++.+| +.--+.+..+.-...+++-++.+.
T Consensus 171 gg~~~Rsh~if~kg~--~k~~ik~~~isPevsvd~a~k~~~ 209 (211)
T KOG0855|consen 171 GGLPGRSHYIFDKGG--VKQLIKNNQISPEVSVDEALKFLK 209 (211)
T ss_pred CCcccceEEEEecCC--eEEEEEecccCccccHHHHHHHHh
Confidence 112334799999874 666777777888888888777664
No 28
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.57 E-value=4.6e-14 Score=125.41 Aligned_cols=140 Identities=17% Similarity=0.202 Sum_probs=112.3
Q ss_pred CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842 181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD 260 (399)
Q Consensus 181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~ 260 (399)
.++.+|+.+|.+.+.+. +|+.++++++ +++++||.|+ ..|||+|+.+...|.+...++.
T Consensus 33 ~~~~~g~~~p~~~~~~~-------------------~g~~~~l~~~-~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~ 91 (173)
T PRK03147 33 EKVQVGKEAPNFVLTDL-------------------EGKKIELKDL-KGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYK 91 (173)
T ss_pred cccCCCCCCCCcEeecC-------------------CCCEEeHHHc-CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhh
Confidence 45678888886665554 4899999995 6677888777 8999999999999999999999
Q ss_pred hcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC
Q 015842 261 ALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK 339 (399)
Q Consensus 261 alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~ 339 (399)
+.++++|+|+.+.....++.|.. ..++|+++.|++..+.++||+.
T Consensus 92 ~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~---------------------------------- 137 (173)
T PRK03147 92 EKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVG---------------------------------- 137 (173)
T ss_pred cCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC----------------------------------
Confidence 98999999998766555677764 6789999999999999988773
Q ss_pred CCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842 340 GEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD 385 (399)
Q Consensus 340 GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~ 385 (399)
..|.+||||++| +|++.+.+.. +.+++.+.++.++|
T Consensus 138 ----~~P~~~lid~~g-~i~~~~~g~~-----~~~~l~~~l~~~~~ 173 (173)
T PRK03147 138 ----PLPTTFLIDKDG-KVVKVITGEM-----TEEQLEEYLEKIKP 173 (173)
T ss_pred ----CcCeEEEECCCC-cEEEEEeCCC-----CHHHHHHHHHHhcC
Confidence 147899999996 8998876543 45777777776653
No 29
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.54 E-value=3.3e-14 Score=121.58 Aligned_cols=106 Identities=16% Similarity=0.163 Sum_probs=88.2
Q ss_pred CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec------CChhhHHhhhcC-CCCCcee
Q 015842 218 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH------EYIESEVKDFWP-RYWGGVV 290 (399)
Q Consensus 218 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp------E~~e~~ik~F~~-~~l~f~V 290 (399)
|++++++++ +++++||.|+ ..|||.|+.++..|.+++.++.+.|+.+|+|+. ++++ .++.|.+ +.++|++
T Consensus 13 ~~~v~l~~~-~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~-~~~~~~~~~~~~~p~ 89 (126)
T cd03012 13 DKPLSLAQL-RGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLA-NVKSAVLRYGITYPV 89 (126)
T ss_pred CCccCHHHh-CCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHH-HHHHHHHHcCCCCCE
Confidence 689999997 6667776665 679999999999999999999999999999964 2343 3667764 7799999
Q ss_pred EeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecC
Q 015842 291 VYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIER 365 (399)
Q Consensus 291 LsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~ 365 (399)
++|++..++++||+.. .|.+||||++| +|+|.|.+.
T Consensus 90 ~~D~~~~~~~~~~v~~--------------------------------------~P~~~vid~~G-~v~~~~~G~ 125 (126)
T cd03012 90 ANDNDYATWRAYGNQY--------------------------------------WPALYLIDPTG-NVRHVHFGE 125 (126)
T ss_pred EECCchHHHHHhCCCc--------------------------------------CCeEEEECCCC-cEEEEEecC
Confidence 9999999999887630 37899999996 899999865
No 30
>PLN02412 probable glutathione peroxidase
Probab=99.46 E-value=1.1e-12 Score=118.67 Aligned_cols=136 Identities=9% Similarity=0.029 Sum_probs=93.1
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhc-CCCCC
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFW-PRYWG 287 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp--------E~~e~~ik~F~-~~~l~ 287 (399)
+|+.++++++ +++++||.|+ ..|||+|+.++..|++++.+++..|+.+|+|+. ++.+...+.|. +..++
T Consensus 18 ~G~~v~l~~~-~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (167)
T PLN02412 18 GGNDVSLNQY-KGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAE 95 (167)
T ss_pred CCCEEeHHHh-CCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCC
Confidence 4999999996 5566666666 899999999999999999999999999999985 23333233343 46789
Q ss_pred ceeEec--cch-HHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCC-cccceEEEEecCCCcEEEEEe
Q 015842 288 GVVVYD--QGM-EFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEG-EIKGGLFIVGRGRSGIAYQFI 363 (399)
Q Consensus 288 f~VLsD--p~r-~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~-~qLGGtFVId~gGg~I~yah~ 363 (399)
|||++| ++. .....|+.-+ + ...++ .|.. ...|.+||||++| +|++.|.
T Consensus 96 fpvl~~~d~~g~~~~~~~~~~~-------------~---------~~~~~----~~~~v~~~p~tflId~~G-~vv~~~~ 148 (167)
T PLN02412 96 FPIFDKVDVNGKNTAPLYKYLK-------------A---------EKGGL----FGDAIKWNFTKFLVSKEG-KVVQRYA 148 (167)
T ss_pred CceEeEEeeCCCCCCHHHHHHH-------------h---------hCCCC----CCCCcCCCCeeEEECCCC-cEEEEEC
Confidence 999984 442 4433333210 0 00011 1111 1258899999997 8999997
Q ss_pred cCCCCCCCCHHHHHHHHHhhhhh
Q 015842 364 ERNFGDWAPLAEVIEICTQLQDQ 386 (399)
Q Consensus 364 d~d~gDrad~eeVLaAl~~l~~~ 386 (399)
.. .+.+++.+.++.+.+|
T Consensus 149 g~-----~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 149 PT-----TSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CC-----CCHHHHHHHHHHHHhh
Confidence 44 4567777777766543
No 31
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.44 E-value=1e-12 Score=121.11 Aligned_cols=141 Identities=13% Similarity=0.112 Sum_probs=100.8
Q ss_pred CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechh-hccCCCEEEEeecCCCCcchHHHHHHHHhccch
Q 015842 180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALE-LWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI 258 (399)
Q Consensus 180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsd-L~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pe 258 (399)
+.++.+|+.+|.|.+++. +|+.+++++ ..+++|+||.|+ ..|||.|+.++..+.+..
T Consensus 43 ~~~~~vG~~aP~f~l~d~-------------------~G~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~-- 100 (189)
T TIGR02661 43 DHGPDVGDAAPIFNLPDF-------------------DGEPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIA-- 100 (189)
T ss_pred ccCCCCCCcCCCcEecCC-------------------CCCEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHH--
Confidence 345688999997777665 489999975 356667777665 899999999999998865
Q ss_pred hhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccc
Q 015842 259 FDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQN 337 (399)
Q Consensus 259 f~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn 337 (399)
++.|+++++|+.++.+. ++.|.+ +.++|+.|. .+..+.++||+.
T Consensus 101 -~~~~~~vv~Is~~~~~~-~~~~~~~~~~~~~~~~-~~~~i~~~y~v~-------------------------------- 145 (189)
T TIGR02661 101 -RAEETDVVMISDGTPAE-HRRFLKDHELGGERYV-VSAEIGMAFQVG-------------------------------- 145 (189)
T ss_pred -HhcCCcEEEEeCCCHHH-HHHHHHhcCCCcceee-chhHHHHhccCC--------------------------------
Confidence 34588999999877664 677774 667776654 455666655542
Q ss_pred cCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842 338 FKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ 387 (399)
Q Consensus 338 ~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~ 387 (399)
.+|.+||||++| +|++... ...+.+++++|++++.-.+.-
T Consensus 146 ------~~P~~~lID~~G-~I~~~g~---~~~~~~le~ll~~l~~~~~~~ 185 (189)
T TIGR02661 146 ------KIPYGVLLDQDG-KIRAKGL---TNTREHLESLLEADREGFASL 185 (189)
T ss_pred ------ccceEEEECCCC-eEEEccC---CCCHHHHHHHHHHHHcCcchh
Confidence 147889999996 8988532 233445788888876654433
No 32
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.43 E-value=1.6e-12 Score=117.69 Aligned_cols=134 Identities=16% Similarity=0.094 Sum_probs=97.0
Q ss_pred CCCCCCCCCcccccCccccccchhhhcccccccccCCC--ceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842 182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTP--PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF 259 (399)
Q Consensus 182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~--~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef 259 (399)
+..+|+.+|.|.|++. +|+ .++++++.+++++||.|+ ..|||.|+.+...|.+.
T Consensus 33 ~~~vG~~ap~f~l~~~-------------------~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l---- 88 (173)
T TIGR00385 33 SALIGKPVPAFPLAAL-------------------REPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNEL---- 88 (173)
T ss_pred chhcCCCCCCcccccc-------------------CCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHH----
Confidence 4567888997777665 244 566667767777777777 89999999998887654
Q ss_pred hhcCCeEEEEecCChhhHHhhhcC-CCCCce-eEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccc
Q 015842 260 DALGIQLFAVLHEYIESEVKDFWP-RYWGGV-VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQN 337 (399)
Q Consensus 260 ~alGV~LVaIspE~~e~~ik~F~~-~~l~f~-VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn 337 (399)
.+.|+++|+|+.+........|.+ +.++|+ ++.|++..+.++||+.
T Consensus 89 ~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~-------------------------------- 136 (173)
T TIGR00385 89 AKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY-------------------------------- 136 (173)
T ss_pred HHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe--------------------------------
Confidence 456899999996543333556664 678887 6789999988877662
Q ss_pred cCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842 338 FKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL 383 (399)
Q Consensus 338 ~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l 383 (399)
..|.+|+||++| +|+|.|.+. .+.+++.+.++.+
T Consensus 137 ------~~P~~~~id~~G-~i~~~~~G~-----~~~~~l~~~l~~~ 170 (173)
T TIGR00385 137 ------GAPETFLVDGNG-VILYRHAGP-----LNNEVWTEGFLPA 170 (173)
T ss_pred ------eCCeEEEEcCCc-eEEEEEecc-----CCHHHHHHHHHHH
Confidence 147899999996 899998864 3455555555443
No 33
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.43 E-value=2e-12 Score=118.54 Aligned_cols=122 Identities=18% Similarity=0.124 Sum_probs=92.5
Q ss_pred CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842 183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL 262 (399)
Q Consensus 183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al 262 (399)
..+|+.+|.|.+++. + .+|+.+++.++++++++||.|+ ..|||.|+.++..|.+. .+.
T Consensus 39 ~~~g~~~p~f~l~~~-----~------------g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l----~~~ 96 (185)
T PRK15412 39 ALIGKPVPKFRLESL-----E------------NPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQL----SAQ 96 (185)
T ss_pred hhcCCCCCCcCCccC-----C------------CCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHH----HHc
Confidence 466788886666655 2 1367777777777778888888 89999999999998764 456
Q ss_pred CCeEEEEecCChhhHHhhhcC-CCCCce-eEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 015842 263 GIQLFAVLHEYIESEVKDFWP-RYWGGV-VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG 340 (399)
Q Consensus 263 GV~LVaIspE~~e~~ik~F~~-~~l~f~-VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~G 340 (399)
|+++|+|+-+.....+++|.+ ..++|+ ++.|++..+.++||+.
T Consensus 97 ~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~----------------------------------- 141 (185)
T PRK15412 97 GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY----------------------------------- 141 (185)
T ss_pred CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC-----------------------------------
Confidence 999999985433234677775 667888 5889998888877663
Q ss_pred CCcccceEEEEecCCCcEEEEEecC
Q 015842 341 EGEIKGGLFIVGRGRSGIAYQFIER 365 (399)
Q Consensus 341 D~~qLGGtFVId~gGg~I~yah~d~ 365 (399)
-.|.+||||++| +|+|.|.+.
T Consensus 142 ---~~P~t~vid~~G-~i~~~~~G~ 162 (185)
T PRK15412 142 ---GAPETFLIDGNG-IIRYRHAGD 162 (185)
T ss_pred ---cCCeEEEECCCc-eEEEEEecC
Confidence 137899999996 899999875
No 34
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.39 E-value=5e-12 Score=118.03 Aligned_cols=135 Identities=16% Similarity=0.237 Sum_probs=90.6
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhcC-CCCC
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFWP-RYWG 287 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp--------E~~e~~ik~F~~-~~l~ 287 (399)
+|+.++++++ ++ ++||++|...|||+|+.++..|.+++.++.+.|+++|+|+. ++++ .++.|.+ ..++
T Consensus 28 ~G~~vsL~~~-kG-kvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e-~~~~f~~~~~~~ 104 (199)
T PTZ00056 28 EGTTVPMSSL-KN-KVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTK-DIRKFNDKNKIK 104 (199)
T ss_pred CCCEEeHHHh-CC-CEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHH-HHHHHHHHcCCC
Confidence 4999999996 54 45666678899999999999999999999999999999985 3444 3788875 6789
Q ss_pred ceeEecc------chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEE
Q 015842 288 GVVVYDQ------GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQ 361 (399)
Q Consensus 288 f~VLsDp------~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~ya 361 (399)
|++++|. ...+|+.++-.. ..+ . +..+...+-.+ .+.+||||++| +|++.
T Consensus 105 fpvl~d~~v~g~~~~~l~~~l~~~~-------~~~-~--------------d~~~~~~~i~~-~~~tflID~~G-~iv~~ 160 (199)
T PTZ00056 105 YNFFEPIEVNGENTHELFKFLKANC-------DSM-H--------------DENGTLKAIGW-NFGKFLVNKSG-NVVAY 160 (199)
T ss_pred ceeeeeeeccCCccCHHHHHHHHhC-------ccc-c--------------cccccCCccCC-CCEEEEECCCC-cEEEE
Confidence 9999873 445555443110 000 0 00000000001 14799999997 89887
Q ss_pred EecCCCCCCCCHHHHHHHHHhh
Q 015842 362 FIERNFGDWAPLAEVIEICTQL 383 (399)
Q Consensus 362 h~d~d~gDrad~eeVLaAl~~l 383 (399)
|... .+.+++.+.++.+
T Consensus 161 ~~g~-----~~~~~l~~~I~~l 177 (199)
T PTZ00056 161 FSPR-----TEPLELEKKIAEL 177 (199)
T ss_pred eCCC-----CCHHHHHHHHHHH
Confidence 7543 3455665555554
No 35
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.36 E-value=6.2e-12 Score=121.01 Aligned_cols=153 Identities=11% Similarity=0.057 Sum_probs=105.7
Q ss_pred CcCCCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhcc
Q 015842 177 GCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKK 256 (399)
Q Consensus 177 g~~~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~ 256 (399)
+++......|+.+|.+.++|. +|+.++++++ +++++||+|+ ..|||.|+.++.+|++++
T Consensus 67 ~~~~~~~~~g~~aPdF~l~d~-------------------~G~~vsLsd~-kGK~vvl~Fw-AswCp~c~~e~p~L~~L~ 125 (236)
T PLN02399 67 FGVYARAATEKSVHDFTVKDI-------------------DGKDVALSKF-KGKVLLIVNV-ASKCGLTSSNYSELSHLY 125 (236)
T ss_pred cccccchhcCCCCCceEEECC-------------------CCCEEeHHHh-CCCeEEEEEE-cCCCcchHHHHHHHHHHH
Confidence 344434467888887777666 5999999996 6677888887 889999999999999999
Q ss_pred chhhhcCCeEEEEecC--------ChhhHHhhhc--CCCCCceeEeccc--h-HHHHHhCCCcccccccccccccCHHHH
Q 015842 257 PIFDALGIQLFAVLHE--------YIESEVKDFW--PRYWGGVVVYDQG--M-EFFKALGGGKLLKDKFLSGFLLNPRAI 323 (399)
Q Consensus 257 pef~alGV~LVaIspE--------~~e~~ik~F~--~~~l~f~VLsDp~--r-~lYkaLGl~r~~r~s~lsgfl~~P~v~ 323 (399)
.++++.|+++|+|... +.+ ++++|. +..++|+|+.|.+ . .....|++.+
T Consensus 126 ~~~~~~Gv~VIgV~~d~~~~~e~~s~~-ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~----------------- 187 (236)
T PLN02399 126 EKYKTQGFEILAFPCNQFGGQEPGSNP-EIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLK----------------- 187 (236)
T ss_pred HHHhcCCcEEEEEecccccccCCCCHH-HHHHHHHHhcCCCCccccccCCCcchhhHHHHHHH-----------------
Confidence 9999999999999952 333 478885 3578999996543 2 3333222100
Q ss_pred HHHHHHHhcCCccccCCCC-cccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842 324 ANYKRARTLGVEQNFKGEG-EIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL 383 (399)
Q Consensus 324 ~~~~rA~~~G~~gn~~GD~-~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l 383 (399)
.+ ..|+. |+. .-.|-+||||++| +|++.|... .+.+++.+.++.+
T Consensus 188 ----~~-~~~~~----g~~i~~~PttfLIDk~G-kVv~~~~G~-----~~~~~le~~I~~l 233 (236)
T PLN02399 188 ----SN-AGGFL----GDLIKWNFEKFLVDKNG-KVVERYPPT-----TSPFQIEKDIQKL 233 (236)
T ss_pred ----Hh-cCCcc----CCccccCceEEEECCCC-cEEEEECCC-----CCHHHHHHHHHHH
Confidence 00 01111 211 1247899999997 899999754 2556666666655
No 36
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.34 E-value=1.4e-11 Score=113.04 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=88.9
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC--------ChhhHHhhhc--CCCC
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE--------YIESEVKDFW--PRYW 286 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE--------~~e~~ik~F~--~~~l 286 (399)
+|++++++++ +++++||+|+=..|||+|+.++..|++++.+++..|+.+|+|+.. +.+ .+..|. +..+
T Consensus 29 ~G~~vsLs~~-~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~-~~~~f~~~~~~~ 106 (183)
T PTZ00256 29 DGQLVQLSKF-KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEP-EIKEYVQKKFNV 106 (183)
T ss_pred CCCEEeHHHh-CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHH-HHHHHHHHhcCC
Confidence 4999999996 666776666568899999999999999999999999999999853 222 366674 3578
Q ss_pred CceeEec--cc----hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccc---eEEEEecCCCc
Q 015842 287 GGVVVYD--QG----MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKG---GLFIVGRGRSG 357 (399)
Q Consensus 287 ~f~VLsD--p~----r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLG---GtFVId~gGg~ 357 (399)
+|++++| ++ ..+|+-|+-.. +.-+...|...-+| .+||||++| +
T Consensus 107 ~fpv~~d~d~~g~~~~~~~~~l~~~~--------------------------~~~~~~~~~~~~iP~~~~tflID~~G-~ 159 (183)
T PTZ00256 107 DFPLFQKIEVNGENTHEIYKYLRRNS--------------------------ELFQNNTNEARQIPWNFAKFLIDGQG-K 159 (183)
T ss_pred CCCCceEEecCCCCCCHHHHHHHhhC--------------------------CCCcCccccCcccCcceEEEEECCCC-C
Confidence 9999976 33 34554332210 00000011222245 589999997 8
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHh
Q 015842 358 IAYQFIERNFGDWAPLAEVIEICTQ 382 (399)
Q Consensus 358 I~yah~d~d~gDrad~eeVLaAl~~ 382 (399)
|++.|.+. .+.+++.+.+..
T Consensus 160 Iv~~~~g~-----~~~~~l~~~I~~ 179 (183)
T PTZ00256 160 VVKYFSPK-----VNPNEMIQDIEK 179 (183)
T ss_pred EEEEECCC-----CCHHHHHHHHHH
Confidence 99999863 244455444443
No 37
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.33 E-value=5.8e-12 Score=108.30 Aligned_cols=119 Identities=13% Similarity=0.080 Sum_probs=86.8
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcc-hHHHHHHHHhccchhhhcC---CeEEEEecCC----hhhHHhhhcC-CCCC
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIM-CRAEAHQLYAKKPIFDALG---IQLFAVLHEY----IESEVKDFWP-RYWG 287 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~-Cr~el~~L~e~~pef~alG---V~LVaIspE~----~e~~ik~F~~-~~l~ 287 (399)
+|+++++.++ +++++| ++|...||+. |+.++..|++.+.++.+.| +++|+|+.+. ++ .+++|.+ ...+
T Consensus 11 ~g~~~~l~~~-~gk~~v-l~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~-~~~~~~~~~~~~ 87 (142)
T cd02968 11 DGRPVTLSDL-KGKPVL-VYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPE-VLKAYAKAFGPG 87 (142)
T ss_pred CCCEEchHHh-CCCEEE-EEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHH-HHHHHHHHhCCC
Confidence 4899999997 555555 5556699997 9999999999999999876 9999999643 33 3677775 4578
Q ss_pred ceeEeccc---hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEe
Q 015842 288 GVVVYDQG---MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFI 363 (399)
Q Consensus 288 f~VLsDp~---r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~ 363 (399)
|++++|++ ..+.++||+.. . |... +. ..+.....|++||||++| +|++.|.
T Consensus 88 ~~~l~~~~~~~~~~~~~~g~~~-----------~-~~~~---------~~---~~~~~~~~~~~~lid~~G-~i~~~~~ 141 (142)
T cd02968 88 WIGLTGTPEEIEALAKAFGVYY-----------E-KVPE---------DD---GDYLVDHSAAIYLVDPDG-KLVRYYG 141 (142)
T ss_pred cEEEECCHHHHHHHHHHhcEEE-----------E-ecCC---------CC---CceeEeccceEEEECCCC-CEEEeec
Confidence 99999986 78999999852 0 1100 00 001112358999999996 8999875
No 38
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.32 E-value=1.4e-11 Score=104.80 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=80.9
Q ss_pred CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCce-eEeccc
Q 015842 218 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGV-VVYDQG 295 (399)
Q Consensus 218 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~-VLsDp~ 295 (399)
+++++++++ +++++||.|+ ..|||.|+.++..|.+...+ .++++|+|+.+.....+++|.. ..++|+ ++.|++
T Consensus 15 ~~~~~~~~~-~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~---~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 89 (127)
T cd03010 15 DKTLTSADL-KGKPYLLNVW-ASWCAPCREEHPVLMALARQ---GRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPD 89 (127)
T ss_pred CccccHHHc-CCCEEEEEEE-cCcCHHHHHHHHHHHHHHHh---cCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCc
Confidence 378888886 6778888888 89999999999999876443 3599999996444344777774 556775 779999
Q ss_pred hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecC
Q 015842 296 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIER 365 (399)
Q Consensus 296 r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~ 365 (399)
..+.++||+. .+|.+|+||++| +|++.+.+.
T Consensus 90 ~~~~~~~~v~--------------------------------------~~P~~~~ld~~G-~v~~~~~G~ 120 (127)
T cd03010 90 GRVGIDLGVY--------------------------------------GVPETFLIDGDG-IIRYKHVGP 120 (127)
T ss_pred chHHHhcCCC--------------------------------------CCCeEEEECCCc-eEEEEEecc
Confidence 8888877763 157899999996 899998874
No 39
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.30 E-value=4.6e-12 Score=112.18 Aligned_cols=119 Identities=13% Similarity=0.048 Sum_probs=82.1
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhcC--CCC
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFWP--RYW 286 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp--------E~~e~~ik~F~~--~~l 286 (399)
+|++++++++ +++++| ++|...||| |+.++..|+++++++++.|+.+|+|+. ++++ .+++|.+ ..+
T Consensus 11 ~G~~v~l~~~-~Gk~vv-l~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~-~~~~f~~~~~~~ 86 (152)
T cd00340 11 DGEPVSLSKY-KGKVLL-IVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNE-EIKEFCETNYGV 86 (152)
T ss_pred CCCEEeHHHh-CCCEEE-EEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHH-HHHHHHHHhcCC
Confidence 5999999996 555555 555599999 999999999999999999999999985 2343 3788874 578
Q ss_pred CceeEeccch--H-HHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEe
Q 015842 287 GGVVVYDQGM--E-FFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFI 363 (399)
Q Consensus 287 ~f~VLsDp~r--~-lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~ 363 (399)
+||+++|++. . .+++||... .++..-..+.....+.+||||++| +|++.|.
T Consensus 87 ~fp~~~d~d~~~~~~~~~~~~~~-------------------------~~~p~~~~~~~~~~~ttflId~~G-~i~~~~~ 140 (152)
T cd00340 87 TFPMFAKIDVNGENAHPLYKYLK-------------------------EEAPGLLGKDIKWNFTKFLVDRDG-EVVKRFA 140 (152)
T ss_pred CceeeeeEeccCCCCChHHHHHH-------------------------hcCCCCCCCccccccEEEEECCCC-cEEEEEC
Confidence 9999998532 1 333333200 011100001111135799999997 8999988
Q ss_pred cC
Q 015842 364 ER 365 (399)
Q Consensus 364 d~ 365 (399)
+.
T Consensus 141 G~ 142 (152)
T cd00340 141 PT 142 (152)
T ss_pred CC
Confidence 85
No 40
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.27 E-value=3e-11 Score=100.37 Aligned_cols=102 Identities=13% Similarity=0.054 Sum_probs=73.1
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCC-CceeEecc
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYW-GGVVVYDQ 294 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l-~f~VLsDp 294 (399)
+|+.+++.++.+++|+||.|+ ..|||.|+.++..|.+...+. +.++.+|+|+.++.+. .+.|.+ ..+ .++++.|
T Consensus 9 ~G~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~-~~~~~vi~v~~~~~~~-~~~~~~~~~~~~~p~~~~- 84 (114)
T cd02967 9 DGAPVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAE-ADWLDVVLASDGEKAE-HQRFLKKHGLEAFPYVLS- 84 (114)
T ss_pred CCCEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHh-cCCcEEEEEeCCCHHH-HHHHHHHhCCCCCcEEec-
Confidence 599999999754567777765 899999999999998876655 3478999998666654 666664 444 3676653
Q ss_pred chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEE
Q 015842 295 GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQF 362 (399)
Q Consensus 295 ~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah 362 (399)
..+.++||+. .+|.+||||++| +|+|..
T Consensus 85 -~~~~~~~~~~--------------------------------------~~P~~~vid~~G-~v~~~~ 112 (114)
T cd02967 85 -AELGMAYQVS--------------------------------------KLPYAVLLDEAG-VIAAKG 112 (114)
T ss_pred -HHHHhhcCCC--------------------------------------CcCeEEEECCCC-eEEecc
Confidence 2344444331 258999999996 888854
No 41
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.26 E-value=1.9e-11 Score=108.17 Aligned_cols=125 Identities=11% Similarity=0.039 Sum_probs=88.1
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhcC--CCC
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFWP--RYW 286 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp--------E~~e~~ik~F~~--~~l 286 (399)
+|++++++++ +++++||+ +--.|||+|..++.+|.+++.++.+.|+.+|+|.+ ++.+ .++.|.+ ..+
T Consensus 11 ~G~~~~l~~~-~Gk~vvv~-~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~-~~~~f~~~~~~~ 87 (153)
T TIGR02540 11 RGRTVSLEKY-RGKVSLVV-NVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSK-EIESFARRNYGV 87 (153)
T ss_pred CCCEecHHHh-CCCEEEEE-EeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHH-HHHHHHHHhcCC
Confidence 5999999996 55565555 55899999999999999999999999999999984 4444 3788883 588
Q ss_pred CceeEecc---chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccc----eEEEEecCCCcEE
Q 015842 287 GGVVVYDQ---GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKG----GLFIVGRGRSGIA 359 (399)
Q Consensus 287 ~f~VLsDp---~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLG----GtFVId~gGg~I~ 359 (399)
+||+++|. +.....+++. ... .. -..| .+||||++| +|+
T Consensus 88 ~fp~~~d~~~~~~~~~~~~~~----------------------~~~---~~--------~~~p~~~~~tflID~~G-~v~ 133 (153)
T TIGR02540 88 TFPMFSKIKILGSEAEPAFRF----------------------LVD---SS--------KKEPRWNFWKYLVNPEG-QVV 133 (153)
T ss_pred CCCccceEecCCCCCCcHHHH----------------------HHh---cC--------CCCCCCccEEEEEcCCC-cEE
Confidence 99999883 2221111111 000 00 0123 499999997 899
Q ss_pred EEEecCCCCCCCCHHHHHHHHHhh
Q 015842 360 YQFIERNFGDWAPLAEVIEICTQL 383 (399)
Q Consensus 360 yah~d~d~gDrad~eeVLaAl~~l 383 (399)
+.|... .+.+++.+.++.+
T Consensus 134 ~~~~g~-----~~~~~l~~~i~~l 152 (153)
T TIGR02540 134 KFWRPE-----EPVEEIRPEITAL 152 (153)
T ss_pred EEECCC-----CCHHHHHHHHHHh
Confidence 998775 3567776666543
No 42
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.24 E-value=5.7e-11 Score=95.32 Aligned_cols=106 Identities=22% Similarity=0.203 Sum_probs=85.3
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCCh-hhHHhhhcC-CCCCceeEecc
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYI-ESEVKDFWP-RYWGGVVVYDQ 294 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~-e~~ik~F~~-~~l~f~VLsDp 294 (399)
+|+.+++.++. ++++| ++|...||+.|...+..|.+...++.+.++.+++|+.+.. ...++.|.. ..++++++.|+
T Consensus 8 ~g~~~~~~~~~-~k~~l-l~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (116)
T cd02966 8 DGKPVSLSDLK-GKVVL-VNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP 85 (116)
T ss_pred CCCEeehHHcC-CCEEE-EEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC
Confidence 58999999974 44544 5555789999999999999999999888999999998773 334777774 66899999999
Q ss_pred chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEe
Q 015842 295 GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFI 363 (399)
Q Consensus 295 ~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~ 363 (399)
+..+++.||+. ..|.+||+|++| +|++.+.
T Consensus 86 ~~~~~~~~~~~--------------------------------------~~P~~~l~d~~g-~v~~~~~ 115 (116)
T cd02966 86 DGELAKAYGVR--------------------------------------GLPTTFLIDRDG-RIRARHV 115 (116)
T ss_pred cchHHHhcCcC--------------------------------------ccceEEEECCCC-cEEEEec
Confidence 99999888763 136789999996 8988774
No 43
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.9e-10 Score=105.14 Aligned_cols=142 Identities=18% Similarity=0.246 Sum_probs=116.2
Q ss_pred CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhh------HHhhhcC---CCCCce
Q 015842 219 PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIES------EVKDFWP---RYWGGV 289 (399)
Q Consensus 219 ~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~------~ik~F~~---~~l~f~ 289 (399)
..+.+-+.+.+...||+--.+...|.|.-|+.+++++.|+|++.||+++|.|.+..++ -++.|.+ +.++||
T Consensus 22 g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~Wi~DIks~~~~~~~~~~yP 101 (224)
T KOG0854|consen 22 GKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKDWIKDIKSYAKVKNHSVPYP 101 (224)
T ss_pred cceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 4788999888988888777777999999999999999999999999999999988765 2334442 459999
Q ss_pred eEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCC
Q 015842 290 VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGD 369 (399)
Q Consensus 290 VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gD 369 (399)
|+.|+.+.++-.|||- +|... +..|++....++||||++. +|+..+..+.+..
T Consensus 102 IIaD~~rela~~l~Ml-------------D~~e~-------------~~~~~~~T~Ravfvi~pdk-KirLs~lYP~ttG 154 (224)
T KOG0854|consen 102 IIADPNRELAFLLNML-------------DPEEK-------------KNIGDGKTVRAVFVIDPDK-KIRLSFLYPSTTG 154 (224)
T ss_pred eecCCchhhhhhhccc-------------CHhHc-------------CCCCCCceEEEEEEECCCc-eEEEEEEcccccC
Confidence 9999999999988873 44411 2236677789999999995 9999999887766
Q ss_pred CCCHHHHHHHHHhhhhhhc
Q 015842 370 WAPLAEVIEICTQLQDQQR 388 (399)
Q Consensus 370 rad~eeVLaAl~~l~~~~~ 388 (399)
| +.+|||.++..++=.+.
T Consensus 155 R-N~dEiLRvidsLqlt~~ 172 (224)
T KOG0854|consen 155 R-NFDEILRVIDSLQLTDK 172 (224)
T ss_pred c-CHHHHHHHHHHHhhhcc
Confidence 6 58999999999875553
No 44
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.11 E-value=8.2e-10 Score=92.88 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=78.5
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC--ChhhHHhhhcC-CCCCceeEec
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE--YIESEVKDFWP-RYWGGVVVYD 293 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE--~~e~~ik~F~~-~~l~f~VLsD 293 (399)
+|+.+++.++ +++++||.|+ ..|||.|+.++..|.+.+.+ +++++|+-+ +.+ .++.|.+ ..++|+++.|
T Consensus 9 ~g~~~~~~~~-~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~d 80 (123)
T cd03011 9 DGEQFDLESL-SGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDG-AVARFMQKKGYGFPVIND 80 (123)
T ss_pred CCCEeeHHHh-CCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHH-HHHHHHHHcCCCccEEEC
Confidence 5889999986 5578888888 88999999999999887655 577788743 233 3666664 6789999999
Q ss_pred cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecC
Q 015842 294 QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIER 365 (399)
Q Consensus 294 p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~ 365 (399)
++..+.+.||+.. .|..||+|++ + |++.+.+.
T Consensus 81 ~~~~~~~~~~i~~--------------------------------------~P~~~vid~~-g-i~~~~~g~ 112 (123)
T cd03011 81 PDGVISARWGVSV--------------------------------------TPAIVIVDPG-G-IVFVTTGV 112 (123)
T ss_pred CCcHHHHhCCCCc--------------------------------------ccEEEEEcCC-C-eEEEEecc
Confidence 9999999887631 4789999998 3 88877654
No 45
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.6e-09 Score=97.74 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=113.7
Q ss_pred ccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-----CCC-
Q 015842 213 LVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-----RYW- 286 (399)
Q Consensus 213 ~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-----~~l- 286 (399)
+|+..=+.++|+++ ..+-+|+.||...+.-.|=.|..++++..++|++.|+++++||.++.-. +.+|.. +++
T Consensus 18 VVdG~f~e~~L~dy-~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fs-hlAW~ntprk~gGlg 95 (196)
T KOG0852|consen 18 VVDGEFKEIKLSDY-KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFS-HLAWINTPRKQGGLG 95 (196)
T ss_pred EEcCcceEEeehhh-cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhh-hhhHhcCchhhCCcC
Confidence 34444568899996 5578899999999999999999999999999999999999999988765 666652 344
Q ss_pred --CceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEec
Q 015842 287 --GGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIE 364 (399)
Q Consensus 287 --~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d 364 (399)
..|+++|+++++.+.||+-. + .+|..+.|.||||++| .++-. .-
T Consensus 96 ~~~iPllsD~~~~IsrdyGvL~-------------~-------------------~~G~~lRglfIId~~g-i~R~i-t~ 141 (196)
T KOG0852|consen 96 PLNIPLLSDLNHEISRDYGVLK-------------E-------------------DEGIALRGLFIIDPDG-ILRQI-TI 141 (196)
T ss_pred ccccceeeccchhhHHhcCcee-------------c-------------------CCCcceeeeEEEcccc-ceEEe-ee
Confidence 48999999999999999831 1 2344567999999996 44433 33
Q ss_pred CCCCCCCCHHHHHHHHHhhhhhh----------cccccccccc
Q 015842 365 RNFGDWAPLAEVIEICTQLQDQQ----------RDQSETIKTS 397 (399)
Q Consensus 365 ~d~gDrad~eeVLaAl~~l~~~~----------~~~~~~~~~~ 397 (399)
.|..---.++|+|..+++.|-.. .+||.|||..
T Consensus 142 NDlpvgRSVdE~lRLvqAfQ~td~~geVcPagW~pgs~tikp~ 184 (196)
T KOG0852|consen 142 NDLPVGRSVDETLRLVQAFQFTDEHGEVCPAGWKPGSDTIKPD 184 (196)
T ss_pred cccCCCccHHHHHHHHHHHhhhhccCccccCCCCCCCcccCCC
Confidence 33444446788888888876332 6788999864
No 46
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.96 E-value=6.4e-09 Score=110.24 Aligned_cols=150 Identities=10% Similarity=0.126 Sum_probs=101.2
Q ss_pred CcccccCcCCCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHH
Q 015842 171 AVPRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAH 250 (399)
Q Consensus 171 ~~l~a~g~~~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~ 250 (399)
+.+-.+||-.....+++...-..+|++++.++ +|+.++++ +++||||.|+ ..|||.|+.++-
T Consensus 15 ~~~~~s~c~~~~~~~~~~~~~~~lP~f~l~D~--------------dG~~v~ls---kGKpVvV~FW-ATWCppCk~emP 76 (521)
T PRK14018 15 CLLALGACSPKILDAGTATVPHTLSTLKTADN--------------RPASVYLK---KDKPTLIKFW-ASWCPLCLSELG 76 (521)
T ss_pred HHHhhcccccccCccccccccCCCCCeEeecC--------------CCceeecc---CCCEEEEEEE-cCCCHHHHHHHH
Confidence 33445555433333343222234556665544 48888876 5556565555 899999999999
Q ss_pred HHHhccchhhhcCCeEEEEecC-----ChhhHHhhhcC--CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHH
Q 015842 251 QLYAKKPIFDALGIQLFAVLHE-----YIESEVKDFWP--RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAI 323 (399)
Q Consensus 251 ~L~e~~pef~alGV~LVaIspE-----~~e~~ik~F~~--~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~ 323 (399)
.|.++..+.+..|+++|+|+-+ .....++.|.. ++..++++.|++..+.++||+.
T Consensus 77 ~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~------------------ 138 (521)
T PRK14018 77 ETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNIS------------------ 138 (521)
T ss_pred HHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCC------------------
Confidence 9999988887778999999742 11122444443 2335789999999999988773
Q ss_pred HHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHh
Q 015842 324 ANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQ 382 (399)
Q Consensus 324 ~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~ 382 (399)
-+|.+||||++| .|++.+.+.- +.++|.+.++.
T Consensus 139 --------------------giPTt~IIDkdG-kIV~~~~G~~-----~~eeL~a~Ie~ 171 (521)
T PRK14018 139 --------------------VYPSWAIIGKDG-DVQRIVKGSI-----SEAQALALIRN 171 (521)
T ss_pred --------------------CcCeEEEEcCCC-eEEEEEeCCC-----CHHHHHHHHHH
Confidence 157899999996 8999998863 45666666653
No 47
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.89 E-value=5.9e-09 Score=89.25 Aligned_cols=87 Identities=10% Similarity=0.065 Sum_probs=61.5
Q ss_pred ccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc--CCeEEEEecCChhhHHhhhcC-C---CCCc
Q 015842 215 KTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL--GIQLFAVLHEYIESEVKDFWP-R---YWGG 288 (399)
Q Consensus 215 ~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al--GV~LVaIspE~~e~~ik~F~~-~---~l~f 288 (399)
+.+|+.++++++ +++++||.|+ ..|||.|+.++..|++.+.+++.. ++++|+|+.+......+.|.. . .++|
T Consensus 5 ~~~G~~v~l~~~-~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~ 82 (131)
T cd03009 5 RNDGGKVPVSSL-EGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPF 82 (131)
T ss_pred ccCCCCccHHHh-CCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEccc
Confidence 446999999996 5666666555 689999999999999999998875 788999997765444555543 1 1233
Q ss_pred eeEeccchHHHHHhCC
Q 015842 289 VVVYDQGMEFFKALGG 304 (399)
Q Consensus 289 ~VLsDp~r~lYkaLGl 304 (399)
+. +|+...+.++||+
T Consensus 83 ~~-~~~~~~~~~~~~v 97 (131)
T cd03009 83 SD-RERRSRLNRTFKI 97 (131)
T ss_pred CC-HHHHHHHHHHcCC
Confidence 22 3455566666665
No 48
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.77 E-value=2.8e-08 Score=85.77 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=48.5
Q ss_pred CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc--CCeEEEEecCChhhHHhhhcC
Q 015842 219 PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL--GIQLFAVLHEYIESEVKDFWP 283 (399)
Q Consensus 219 ~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al--GV~LVaIspE~~e~~ik~F~~ 283 (399)
++++++++ +++++| ++|=..||+.|+.++..|++.+.+++.. ++.+++|+.+.....++.|..
T Consensus 8 ~~v~l~~~-~Gk~vl-l~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~ 72 (132)
T cd02964 8 GVVPVSAL-EGKTVG-LYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFS 72 (132)
T ss_pred ccccHHHh-CCCEEE-EEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHh
Confidence 59999986 555545 4555999999999999999988888775 789999987654444666664
No 49
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.69 E-value=6.8e-08 Score=86.93 Aligned_cols=102 Identities=12% Similarity=-0.011 Sum_probs=71.9
Q ss_pred CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc-------CCeEEEEecCChhhHHhhhcC-CC--CCc
Q 015842 219 PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL-------GIQLFAVLHEYIESEVKDFWP-RY--WGG 288 (399)
Q Consensus 219 ~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al-------GV~LVaIspE~~e~~ik~F~~-~~--l~f 288 (399)
+.++++++ ++++++|.|. -.|||.|+.++-.|.+.+.++.+. ++.+|+|+.+.....++.|.+ .. |++
T Consensus 16 ~~~~ls~~-kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~ 93 (146)
T cd03008 16 EREIVARL-ENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLF 93 (146)
T ss_pred ccccHHHh-CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCcee
Confidence 35667775 6667776666 889999999999999988777653 789999997655444666664 43 434
Q ss_pred eeEec-cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEE
Q 015842 289 VVVYD-QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQ 361 (399)
Q Consensus 289 ~VLsD-p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~ya 361 (399)
+.+.| .+..+.++||+. -+|.+||||++| +|+..
T Consensus 94 ~p~~~~~~~~l~~~y~v~--------------------------------------~iPt~vlId~~G-~Vv~~ 128 (146)
T cd03008 94 LPFEDEFRRELEAQFSVE--------------------------------------ELPTVVVLKPDG-DVLAA 128 (146)
T ss_pred ecccchHHHHHHHHcCCC--------------------------------------CCCEEEEECCCC-cEEee
Confidence 33333 345777766652 258999999996 77754
No 50
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.68 E-value=2.3e-07 Score=86.39 Aligned_cols=107 Identities=10% Similarity=0.004 Sum_probs=75.7
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEec-cc
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYD-QG 295 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsD-p~ 295 (399)
+|+.++++++- ||+|+. .|||+|+.++-.|.+...++ |+.+++|+-+.. ....||++.| ++
T Consensus 62 dG~~v~lsd~~-----lV~Fwa-swCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~---------~~~~fPv~~dd~~ 123 (181)
T PRK13728 62 NGRQVNLADWK-----VVLFMQ-GHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQ---------GDTAFPEALPAPP 123 (181)
T ss_pred CCCEeehhHce-----EEEEEC-CCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCC---------CCCCCceEecCch
Confidence 59999999973 555655 99999999999998876664 799999996532 1357899985 66
Q ss_pred hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEE-EEecCCCCCCCCHH
Q 015842 296 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAY-QFIERNFGDWAPLA 374 (399)
Q Consensus 296 r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~y-ah~d~d~gDrad~e 374 (399)
..+.+.||... ...|.+||||++| .|.| .|++. .+.+
T Consensus 124 ~~~~~~~g~~~------------------------------------~~iPttfLId~~G-~i~~~~~~G~-----~~~~ 161 (181)
T PRK13728 124 DVMQTFFPNIP------------------------------------VATPTTFLVNVNT-LEALPLLQGA-----TDAA 161 (181)
T ss_pred hHHHHHhCCCC------------------------------------CCCCeEEEEeCCC-cEEEEEEECC-----CCHH
Confidence 66766665310 1258999999996 7765 67774 3344
Q ss_pred HHHHHHHhh
Q 015842 375 EVIEICTQL 383 (399)
Q Consensus 375 eVLaAl~~l 383 (399)
++.+.+..+
T Consensus 162 ~L~~~I~~l 170 (181)
T PRK13728 162 GFMARMDTV 170 (181)
T ss_pred HHHHHHHHH
Confidence 554444444
No 51
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.59 E-value=3.8e-07 Score=104.05 Aligned_cols=122 Identities=15% Similarity=0.135 Sum_probs=88.3
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC-----ChhhHHhhhcC-CCCCcee
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE-----YIESEVKDFWP-RYWGGVV 290 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE-----~~e~~ik~F~~-~~l~f~V 290 (399)
+|+++++.+-++++++| +-|--.|||.|+.++-.|.++..+++..|+.+|+|... .....++.|.. ..++|++
T Consensus 408 ~g~~~~l~~~lkGK~vl-l~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pv 486 (1057)
T PLN02919 408 NTAPLQFRRDLKGKVVI-LDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPV 486 (1057)
T ss_pred CCccccchhhcCCCEEE-EEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccE
Confidence 48899986445665555 45567799999999999999999998889999999621 11123555653 6789999
Q ss_pred EeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCC
Q 015842 291 VYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDW 370 (399)
Q Consensus 291 LsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDr 370 (399)
+.|.+..+++.||+. -+|.+||||++| +|++.+.+.. ..
T Consensus 487 v~D~~~~~~~~~~V~--------------------------------------~iPt~ilid~~G-~iv~~~~G~~--~~ 525 (1057)
T PLN02919 487 VNDGDMYLWRELGVS--------------------------------------SWPTFAVVSPNG-KLIAQLSGEG--HR 525 (1057)
T ss_pred EECCchHHHHhcCCC--------------------------------------ccceEEEECCCC-eEEEEEeccc--CH
Confidence 999999998887763 147899999997 8988876642 33
Q ss_pred CCHHHHHHHH
Q 015842 371 APLAEVIEIC 380 (399)
Q Consensus 371 ad~eeVLaAl 380 (399)
..++++++.+
T Consensus 526 ~~l~~~l~~~ 535 (1057)
T PLN02919 526 KDLDDLVEAA 535 (1057)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 52
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.58 E-value=2.8e-07 Score=85.72 Aligned_cols=82 Identities=10% Similarity=0.050 Sum_probs=63.4
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhcC--CCC
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFWP--RYW 286 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp--------E~~e~~ik~F~~--~~l 286 (399)
+|++++|+++ +++++||+| --.||++|. +..+|++++.++.+.|+.+++|.+ ++.+ ++++|.. ..+
T Consensus 14 ~G~~v~Ls~~-~GKvvLVvf-~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~-ei~~f~~~~~g~ 89 (183)
T PRK10606 14 DGEVTTLEKY-AGNVLLIVN-VASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDE-EIKTYCRTTWGV 89 (183)
T ss_pred CCCEEeHHHh-CCCEEEEEE-EeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHH-HHHHHHHHccCC
Confidence 4999999995 555555555 788999996 688999999999999999999986 2333 4888884 568
Q ss_pred CceeEeccc------hHHHHHh
Q 015842 287 GGVVVYDQG------MEFFKAL 302 (399)
Q Consensus 287 ~f~VLsDp~------r~lYkaL 302 (399)
+|+|++|-+ .-+|+-|
T Consensus 90 ~Fpv~~k~dvnG~~~~pl~~~L 111 (183)
T PRK10606 90 TFPMFSKIEVNGEGRHPLYQKL 111 (183)
T ss_pred CceeEEEEccCCCCCCHHHHHH
Confidence 999995544 2377765
No 53
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.54 E-value=4.3e-07 Score=84.77 Aligned_cols=119 Identities=13% Similarity=-0.031 Sum_probs=86.2
Q ss_pred CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeE------EEEecCCh----hhHHhhhcC-CCC
Q 015842 218 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQL------FAVLHEYI----ESEVKDFWP-RYW 286 (399)
Q Consensus 218 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~L------VaIspE~~----e~~ik~F~~-~~l 286 (399)
.++++.++|- |++.|+-|=-.||+-|+.+.-.|.++ ++.|+.+ ++|.-+.. ...++.|.+ ...
T Consensus 49 y~~~~~~~l~--GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~ 122 (184)
T TIGR01626 49 YQPWGSAELA--GKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKK 122 (184)
T ss_pred ceeccHHHcC--CCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcc
Confidence 5578888874 67777777888999999999888776 6678888 99986652 223444443 444
Q ss_pred Cce---eEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceE-EEEecCCCcEEEEE
Q 015842 287 GGV---VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGL-FIVGRGRSGIAYQF 362 (399)
Q Consensus 287 ~f~---VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGt-FVId~gGg~I~yah 362 (399)
.|| ++.|++..+..+||+.. +|-+ ||||++| +|++.|
T Consensus 123 ~~P~~~vllD~~g~v~~~~gv~~--------------------------------------~P~T~fVIDk~G-kVv~~~ 163 (184)
T TIGR01626 123 ENPWSQVVLDDKGAVKNAWQLNS--------------------------------------EDSAIIVLDKTG-KVKFVK 163 (184)
T ss_pred cCCcceEEECCcchHHHhcCCCC--------------------------------------CCceEEEECCCC-cEEEEE
Confidence 566 99999999998888741 3456 9999997 999999
Q ss_pred ecCCCCCCCCHHHHHHHHHhh
Q 015842 363 IERNFGDWAPLAEVIEICTQL 383 (399)
Q Consensus 363 ~d~d~gDrad~eeVLaAl~~l 383 (399)
.+.-. ..++++++..++++
T Consensus 164 ~G~l~--~ee~e~~~~li~~l 182 (184)
T TIGR01626 164 EGALS--DSDIQTVISLVNGL 182 (184)
T ss_pred eCCCC--HHHHHHHHHHHHHH
Confidence 99632 22445666666554
No 54
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.22 E-value=9.9e-06 Score=65.27 Aligned_cols=75 Identities=21% Similarity=0.188 Sum_probs=49.5
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhh-hcCCeEEEEecCChhhHHhhhcC-CCCCceeEecc---chHHHHHhCC
Q 015842 230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD-ALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQ---GMEFFKALGG 304 (399)
Q Consensus 230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~-alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp---~r~lYkaLGl 304 (399)
+++++++|=..||+.|+.++..|.+.+.++. ..++++|+|+.+.-....+++.+ ...++..+... ...+.+.||+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 3456677778899999999999999998888 77899999998755444555554 33455443333 3344444443
No 55
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.1e-05 Score=71.43 Aligned_cols=140 Identities=10% Similarity=0.119 Sum_probs=105.7
Q ss_pred CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842 180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF 259 (399)
Q Consensus 180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef 259 (399)
...+++|+++|.|+|-+-+ .+.+++.+. ++++.||..|..--.|.|-.+++.+++....+
T Consensus 15 g~~~~vGd~ap~ftl~~~d-------------------L~~v~l~~~-~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~ 74 (158)
T COG2077 15 GNEPQVGDKAPDFTLVGKD-------------------LNDVSLADF-AGKKKVISVFPSIDTPVCATQVRKFNEEAAKL 74 (158)
T ss_pred CCCCccCCcCCceEEEcCc-------------------ccceecccc-CCceEEEEEccCCCCchhhHHHHHHHHHHhcc
Confidence 4568999999988876664 446667774 66788999999999999999999999887766
Q ss_pred hhcCCeEEEEecCChhhHHhhhcC-CCCC-ceeEecc-chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842 260 DALGIQLFAVLHEYIESEVKDFWP-RYWG-GVVVYDQ-GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ 336 (399)
Q Consensus 260 ~alGV~LVaIspE~~e~~ik~F~~-~~l~-f~VLsDp-~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g 336 (399)
.. +.+..||.+.|-. .++|+. +++. --.+||= ++.+-++||+.- ....+
T Consensus 75 ~~--~~Vl~IS~DLPFA-q~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I------------~egpL------------- 126 (158)
T COG2077 75 GN--TVVLCISMDLPFA-QKRFCGAEGIENVITLSDFRDRAFGENYGVLI------------NEGPL------------- 126 (158)
T ss_pred CC--cEEEEEeCCChhH-HhhhhhhcCcccceEhhhhhhhhhhHhhCEEe------------ccccc-------------
Confidence 43 8899999998854 688885 5554 5678884 556778888851 00000
Q ss_pred ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCC
Q 015842 337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAP 372 (399)
Q Consensus 337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad 372 (399)
.++.-.++||+|.+| .|.|..+-++..++|+
T Consensus 127 ----~gLlARaV~V~De~g-~V~y~elv~eit~ePn 157 (158)
T COG2077 127 ----AGLLARAVFVLDENG-KVTYSELVPEITEEPN 157 (158)
T ss_pred ----cCeeeeEEEEEcCCC-cEEEEEccchhhcCCC
Confidence 023346999999996 8999999998888875
No 56
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.00 E-value=3.8e-05 Score=75.46 Aligned_cols=109 Identities=12% Similarity=0.091 Sum_probs=72.2
Q ss_pred CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchH
Q 015842 218 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGME 297 (399)
Q Consensus 218 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~ 297 (399)
.+...+++| +++++||.||+. |||+|+.++-.|.+...+. |+++++|+-+.... . .|+.+ +.+..
T Consensus 156 ~~~~~l~~l-~~k~~Lv~F~As-wCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~--~-------~fp~~-~~d~~ 220 (271)
T TIGR02740 156 QKDRVMKDL-AKKSGLFFFFKS-DCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL--P-------GFPNA-RPDAG 220 (271)
T ss_pred HHHHHHHHh-cCCeEEEEEECC-CCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc--c-------cCCcc-cCCHH
Confidence 445677775 566777777775 9999999999998876554 78999998654221 1 14444 44555
Q ss_pred HHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHH
Q 015842 298 FFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVI 377 (399)
Q Consensus 298 lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVL 377 (399)
+.+.||+. .+|.+|+++++|+.|...+.+ ..+.++|.
T Consensus 221 la~~~gV~--------------------------------------~vPtl~Lv~~~~~~v~~v~~G-----~~s~~eL~ 257 (271)
T TIGR02740 221 QAQQLKIR--------------------------------------TVPAVFLADPDPNQFTPIGFG-----VMSADELV 257 (271)
T ss_pred HHHHcCCC--------------------------------------cCCeEEEEECCCCEEEEEEeC-----CCCHHHHH
Confidence 66666653 258999999954466544444 34556776
Q ss_pred HHHHhhh
Q 015842 378 EICTQLQ 384 (399)
Q Consensus 378 aAl~~l~ 384 (399)
+.+..+.
T Consensus 258 ~~i~~~a 264 (271)
T TIGR02740 258 DRILLAA 264 (271)
T ss_pred HHHHHHh
Confidence 6666554
No 57
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.90 E-value=9.6e-05 Score=66.93 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=36.3
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 273 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~ 273 (399)
.|+.+++++. .||.|+. .|||+|+.++-.|.+...+. |+.+++|+-+.
T Consensus 43 ~G~~~~l~~~-----~lvnFWA-sWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~ 90 (153)
T TIGR02738 43 QGRHANQDDY-----ALVFFYQ-STCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG 90 (153)
T ss_pred cchhhhcCCC-----EEEEEEC-CCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC
Confidence 3777776654 3666655 69999999999999876554 78999998653
No 58
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.83 E-value=0.00011 Score=69.99 Aligned_cols=85 Identities=16% Similarity=0.234 Sum_probs=71.9
Q ss_pred ceechhhccCCCEEEE--ee----cCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEe
Q 015842 220 PMKALELWRESPAVLL--CI----RRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVY 292 (399)
Q Consensus 220 ~VsLsdL~~~~pvVLv--Fy----Rg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLs 292 (399)
+|+|.+|++++..+|+ |. +..+||.|...+..+.-..+.|.+.++.+|+|+...++. +..|.+ .+|.|+.||
T Consensus 57 ~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~-i~afk~rmGW~~pw~S 135 (211)
T PF05988_consen 57 PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEK-IEAFKRRMGWTFPWYS 135 (211)
T ss_pred cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHH-HHHHHHhcCCCceEEE
Confidence 5999999998764433 22 245899999999999888999999999999999999886 899986 899999999
Q ss_pred ccchHHHHHhCCC
Q 015842 293 DQGMEFFKALGGG 305 (399)
Q Consensus 293 Dp~r~lYkaLGl~ 305 (399)
.-+..+-..||..
T Consensus 136 s~gs~Fn~D~~~~ 148 (211)
T PF05988_consen 136 SYGSDFNYDFGVS 148 (211)
T ss_pred cCCCcccccccce
Confidence 9988888777764
No 59
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.50 E-value=0.00025 Score=58.69 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=27.2
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHh---ccchhhhcCCeEEEEecCChh
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYA---KKPIFDALGIQLFAVLHEYIE 275 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e---~~pef~alGV~LVaIspE~~e 275 (399)
++|+||+| -..|||||+..-.++.+ ....++. ++.++.+..+...
T Consensus 5 ~k~~v~~F-~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 52 (112)
T PF13098_consen 5 GKPIVVVF-TDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSR 52 (112)
T ss_dssp SSEEEEEE-E-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHH
T ss_pred CCEEEEEE-ECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcc
Confidence 35666666 48999999977777664 3344432 5677777765543
No 60
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.29 E-value=0.0019 Score=54.92 Aligned_cols=110 Identities=14% Similarity=0.132 Sum_probs=60.8
Q ss_pred hhccCC-CEEEEeecCCCCcchHHHHHHHHh---ccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHH
Q 015842 225 ELWRES-PAVLLCIRRPGCIMCRAEAHQLYA---KKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFK 300 (399)
Q Consensus 225 dL~~~~-pvVLvFyRg~gCP~Cr~el~~L~e---~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYk 300 (399)
+..+++ +.|+++|-..||++|+.....+.+ ....+++ ++.++.|..+.... +..|. -..++...+..
T Consensus 8 ~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~-~~~~~-------~~~~~~~~l~~ 78 (125)
T cd02951 8 EAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKE-VTDFD-------GEALSEKELAR 78 (125)
T ss_pred HHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCce-eeccC-------CCCccHHHHHH
Confidence 334455 455556668999999998887753 3333432 56666665433211 11111 01112333444
Q ss_pred HhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHH
Q 015842 301 ALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEIC 380 (399)
Q Consensus 301 aLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl 380 (399)
+||+. -.|.+++++++||.++..+.+. .+.+++.+.+
T Consensus 79 ~~~v~--------------------------------------~~Pt~~~~~~~gg~~~~~~~G~-----~~~~~~~~~l 115 (125)
T cd02951 79 KYRVR--------------------------------------FTPTVIFLDPEGGKEIARLPGY-----LPPDEFLAYL 115 (125)
T ss_pred HcCCc--------------------------------------cccEEEEEcCCCCceeEEecCC-----CCHHHHHHHH
Confidence 33331 2588999999833777766553 3456777777
Q ss_pred Hhhhhh
Q 015842 381 TQLQDQ 386 (399)
Q Consensus 381 ~~l~~~ 386 (399)
+.+..+
T Consensus 116 ~~~~~~ 121 (125)
T cd02951 116 EYVQEK 121 (125)
T ss_pred HHHHhh
Confidence 776544
No 61
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.12 E-value=0.00082 Score=59.61 Aligned_cols=79 Identities=10% Similarity=0.117 Sum_probs=53.9
Q ss_pred CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChh--hHHhhhcCCCCCceeEeccc
Q 015842 218 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIE--SEVKDFWPRYWGGVVVYDQG 295 (399)
Q Consensus 218 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e--~~ik~F~~~~l~f~VLsDp~ 295 (399)
+....+.+....+..||++|-..||+.|+.....|.++..++.. .++++.|.-+... ..++.|.-..+|.-++.|++
T Consensus 8 ~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 8 ASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred hccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence 55666777666665566666788999999999999888777653 3677777644321 22455544677877888865
Q ss_pred hH
Q 015842 296 ME 297 (399)
Q Consensus 296 r~ 297 (399)
.+
T Consensus 87 G~ 88 (142)
T cd02950 87 GN 88 (142)
T ss_pred CC
Confidence 43
No 62
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.94 E-value=0.00085 Score=61.49 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=54.3
Q ss_pred ccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC--eEEEEecCChhhHHhhhc
Q 015842 211 ERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI--QLFAVLHEYIESEVKDFW 282 (399)
Q Consensus 211 ~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV--~LVaIspE~~e~~ik~F~ 282 (399)
+.+.+.+|..+..++-+++ ++|..+|+-.|||-||..--.|.+.+.++++.+. .||.||.+.-++....|.
T Consensus 15 ~~l~~~~~~~~~~~~~l~g-KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~ 87 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQG-KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYM 87 (157)
T ss_pred CeeeccCCccchHhHhhCC-cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHH
Confidence 3444556778878876665 8999999999999999999999998888887654 577788776655455544
No 63
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=96.90 E-value=0.0048 Score=56.55 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=45.4
Q ss_pred CCCceechhhccCCCEEEEeecCCCCc-chHHHHHHHHhccchhhhc--CCeEEEEec----CChhhHHhhhcC
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCI-MCRAEAHQLYAKKPIFDAL--GIQLFAVLH----EYIESEVKDFWP 283 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP-~Cr~el~~L~e~~pef~al--GV~LVaIsp----E~~e~~ik~F~~ 283 (399)
+|++++++++ +++++|| +|=...|| .|-..+..|+++..++.+. .+++|.|+- ++++ .+++|.+
T Consensus 41 ~G~~~~~~~~-~Gk~~lv-~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~-~L~~Y~~ 111 (174)
T PF02630_consen 41 DGKTVTLDDL-KGKWVLV-FFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPE-VLKKYAK 111 (174)
T ss_dssp TSSEEEGGGG-TTSEEEE-EEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HH-HHHHHHH
T ss_pred CCCEecHHHh-CCCeEEE-EEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHH-HHHHHHH
Confidence 5999999886 5555454 45555674 8999999999998888865 678888983 3444 3666664
No 64
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.0017 Score=62.49 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=71.9
Q ss_pred CCceechhhccCCCEEE--EeecCC----CCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCcee
Q 015842 218 TPPMKALELWRESPAVL--LCIRRP----GCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVV 290 (399)
Q Consensus 218 G~~VsLsdL~~~~pvVL--vFyRg~----gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~V 290 (399)
.-+++|.||++++--+| .|+-++ +||.|..-+..+--..+-|+..+|.||+|+....++ +..|.. .+|.|+.
T Consensus 61 ~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~-l~~~k~rmGW~f~w 139 (247)
T COG4312 61 NGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEE-LVAYKRRMGWQFPW 139 (247)
T ss_pred CcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHH-HHHHHHhcCCccee
Confidence 33899999999765433 344333 899999999999989999999999999999888876 777775 8999999
Q ss_pred EeccchHHHHHhCCC
Q 015842 291 VYDQGMEFFKALGGG 305 (399)
Q Consensus 291 LsDp~r~lYkaLGl~ 305 (399)
+|+.+..|=+.|.+.
T Consensus 140 ~Ss~~s~Fn~Df~vs 154 (247)
T COG4312 140 VSSTDSDFNRDFQVS 154 (247)
T ss_pred EeccCcccccccccc
Confidence 999999998888663
No 65
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=96.82 E-value=0.025 Score=53.62 Aligned_cols=137 Identities=14% Similarity=0.123 Sum_probs=78.6
Q ss_pred ccCCCceechhhccCCCEEEEeecCCCCc-chHHHHHHHHhccchhh---hcCCeEEEEec----CChhhHHhhhcC-CC
Q 015842 215 KTKTPPMKALELWRESPAVLLCIRRPGCI-MCRAEAHQLYAKKPIFD---ALGIQLFAVLH----EYIESEVKDFWP-RY 285 (399)
Q Consensus 215 ~~~G~~VsLsdL~~~~pvVLvFyRg~gCP-~Cr~el~~L~e~~pef~---alGV~LVaIsp----E~~e~~ik~F~~-~~ 285 (399)
+.+|+++++.+| +++|+||.| =..-|| .|...+..|...+.++. ...+++|.|+- ++++. +++|.. ++
T Consensus 54 d~~G~~~~~~~l-~Gk~~lv~F-gyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~-lk~Y~~~~~ 130 (207)
T COG1999 54 DQDGKPFTLKDL-KGKPSLVFF-GYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEV-LKKYAELNF 130 (207)
T ss_pred cCCCCEeecccc-CCCEEEEEe-ecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHH-HHHHhcccC
Confidence 446999999998 555666555 334566 89999999988888777 55566777873 33332 444443 22
Q ss_pred CC-ceeEe---ccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCC-c-ccceEEEEecCCCcEE
Q 015842 286 WG-GVVVY---DQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEG-E-IKGGLFIVGRGRSGIA 359 (399)
Q Consensus 286 l~-f~VLs---Dp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~-~-qLGGtFVId~gGg~I~ 359 (399)
.+ +.-++ +.-.+++++|++-. + ....+-.++- . --...|+||++| .+.
T Consensus 131 ~~~~~~ltg~~~~~~~~~k~~~V~~----~---------------------~v~~~~~~~y~~~Hs~~~~lid~~G-~~~ 184 (207)
T COG1999 131 DPRWIGLTGTPEQIEEVAKAYGVFY----S---------------------KVPLDDSQNYTIDHSAGFYLIDADG-RFL 184 (207)
T ss_pred CCCeeeeeCCHHHHHHHHHHhccee----e---------------------ecccCCCCCceeeeeeEEEEECCCC-eEE
Confidence 11 11111 12234444444320 0 0000000111 1 137899999996 666
Q ss_pred EEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842 360 YQFIERNFGDWAPLAEVIEICTQLQD 385 (399)
Q Consensus 360 yah~d~d~gDrad~eeVLaAl~~l~~ 385 (399)
..+..... +++|++.++.+-+
T Consensus 185 ~~~~~~~~-----~~~i~~~l~~l~~ 205 (207)
T COG1999 185 GTYDYGEP-----PEEIAADLKKLLK 205 (207)
T ss_pred EEecCCCC-----hHHHHHHHHHHhh
Confidence 66655433 8999999888753
No 66
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=96.44 E-value=0.0036 Score=50.49 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=45.9
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh--cCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842 223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA--LGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM 296 (399)
Q Consensus 223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a--lGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r 296 (399)
+.+...+++++|.|| ..||+.|+.....+.+...+++. ..+.++.|-.+......+.|.-..+|--++...+.
T Consensus 10 f~~~~~~~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 10 FDHHIAEGNHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred HHHHhhcCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCC
Confidence 344445667666655 88999999999998888777765 35677777665544323444434455444444443
No 67
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.40 E-value=0.0031 Score=52.49 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=41.2
Q ss_pred ccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC-ChhhHHhhhcCCCCCceeEeccc
Q 015842 227 WRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE-YIESEVKDFWPRYWGGVVVYDQG 295 (399)
Q Consensus 227 ~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE-~~e~~ik~F~~~~l~f~VLsDp~ 295 (399)
.++++ ||+.|...||+.|+.....|.++..++. ++.++.|-.+ .-....+.|.-..+|--++.+.+
T Consensus 16 ~~g~~-vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 16 NREDY-TAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred cCCCE-EEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC
Confidence 45545 5555669999999999999988776664 5777777544 22222333432445555556655
No 68
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.36 E-value=0.014 Score=55.61 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=36.9
Q ss_pred echhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCCh
Q 015842 222 KALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYI 274 (399)
Q Consensus 222 sLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~ 274 (399)
.+.++ +++--+++|||+ .||||..++--|+....+. |.++++|+.+..
T Consensus 114 ~l~~l-a~~~gL~~F~~~-~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~ 161 (215)
T PF13728_consen 114 ALKQL-AQKYGLFFFYRS-DCPYCQQQAPILQQFADKY---GFSVIPVSLDGR 161 (215)
T ss_pred HHHHH-hhCeEEEEEEcC-CCchhHHHHHHHHHHHHHh---CCEEEEEecCCC
Confidence 45555 355668888887 8999999999888766544 999999997653
No 69
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.16 E-value=0.015 Score=44.43 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=41.2
Q ss_pred CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842 231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM 296 (399)
Q Consensus 231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r 296 (399)
..+|++|-..||+.|+.....|.+...+ ..++.++.|-.+......+.|.-...|.-++.+.+.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCCChhHHHhcCcccccEEEEEECCE
Confidence 3445555567999999998888876554 467888888766543334455434556555555554
No 70
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.14 E-value=0.014 Score=47.59 Aligned_cols=73 Identities=12% Similarity=0.060 Sum_probs=47.4
Q ss_pred hhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842 225 ELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF 298 (399)
Q Consensus 225 dL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l 298 (399)
.+.+++++|+++|-..||+.|+.....|.++..++.. ++.++.|-.+........+.-...|.-++.+.++.+
T Consensus 8 ~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 8 LYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred HHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEE
Confidence 4556677788888889999999999998887666643 466666665443332344433456655555544443
No 71
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.07 E-value=0.0054 Score=50.81 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=48.4
Q ss_pred hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHH
Q 015842 224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFK 300 (399)
Q Consensus 224 sdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYk 300 (399)
.++...+..||+.|-..||+.|+.....|.+...++...++.++.|--+..+ .+++|.-...|--++...+..+.+
T Consensus 11 ~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~-~~~~~~v~~~Pt~~~~~~g~~~~~ 86 (102)
T cd02948 11 EELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTID-TLKRYRGKCEPTFLFYKNGELVAV 86 (102)
T ss_pred HHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHH-HHHHcCCCcCcEEEEEECCEEEEE
Confidence 4444555667777788999999999999988777776445677777766443 356665444443333333433333
No 72
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.03 Score=51.64 Aligned_cols=87 Identities=14% Similarity=0.051 Sum_probs=69.9
Q ss_pred CCceechhhccCCCEEEEeecCCCCcc-hHHHHHHHHhccchhhhcCCeEEEEe-cCChhhHHhhhcC-CC--CCceeEe
Q 015842 218 TPPMKALELWRESPAVLLCIRRPGCIM-CRAEAHQLYAKKPIFDALGIQLFAVL-HEYIESEVKDFWP-RY--WGGVVVY 292 (399)
Q Consensus 218 G~~VsLsdL~~~~pvVLvFyRg~gCP~-Cr~el~~L~e~~pef~alGV~LVaIs-pE~~e~~ik~F~~-~~--l~f~VLs 292 (399)
+.++++++|.+.+++||+=..+...|- |..++--+-+...+|++.|+..|++. -.++ -.++.|.+ .. =....++
T Consensus 32 ~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVnDp-Fv~~aW~k~~g~~~~V~f~a 110 (171)
T KOG0541|consen 32 GNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVNDP-FVMKAWAKSLGANDHVKFVA 110 (171)
T ss_pred cceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecCcH-HHHHHHHhhcCccceEEEEe
Confidence 459999999999999999999999999 67788899999999999999976654 4444 33566654 11 1345899
Q ss_pred ccchHHHHHhCCC
Q 015842 293 DQGMEFFKALGGG 305 (399)
Q Consensus 293 Dp~r~lYkaLGl~ 305 (399)
|++..+.++||+.
T Consensus 111 D~~g~ftk~lgle 123 (171)
T KOG0541|consen 111 DPAGEFTKSLGLE 123 (171)
T ss_pred cCCCceeeeccce
Confidence 9999999999996
No 73
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=95.99 E-value=0.025 Score=45.13 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=50.1
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHH
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFF 299 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lY 299 (399)
++++||.||. .||+.|+.....|.++..++.. ++.++-|-.+......+.|.-..+|--++...+....
T Consensus 17 ~~~vvv~f~~-~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 17 DKPVVVYFYA-PWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp SSEEEEEEES-TTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEE
T ss_pred CCCEEEEEeC-CCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCCCCEEEEEECCcEEE
Confidence 4667777766 7999999999999998888877 8888888876554445555545666666666555444
No 74
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=95.99 E-value=0.016 Score=47.55 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=39.2
Q ss_pred ccCCCEEEEeecCCCCcchHHHHHHH---HhccchhhhcCCeEEEEecCCh----hhHHhhhcCCCCCceeEecc
Q 015842 227 WRESPAVLLCIRRPGCIMCRAEAHQL---YAKKPIFDALGIQLFAVLHEYI----ESEVKDFWPRYWGGVVVYDQ 294 (399)
Q Consensus 227 ~~~~pvVLvFyRg~gCP~Cr~el~~L---~e~~pef~alGV~LVaIspE~~----e~~ik~F~~~~l~f~VLsDp 294 (399)
.+.+..||+.|-..||+.|+.....+ .+....+.. ++.++.|-.+.. ....+.|.-..+|--++.|+
T Consensus 8 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 8 LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 34444455555579999999987665 234445554 677777654331 12223333356676677775
No 75
>PRK10996 thioredoxin 2; Provisional
Probab=95.84 E-value=0.013 Score=51.61 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=46.7
Q ss_pred eechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchH
Q 015842 221 MKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGME 297 (399)
Q Consensus 221 VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~ 297 (399)
..+.++.++++.|+++|-..||+.|+.....|.+...++.. ++.++.|-.+......+.|.-..+|--++.+.++.
T Consensus 43 ~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~ 118 (139)
T PRK10996 43 ETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQV 118 (139)
T ss_pred HHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEE
Confidence 34555666556666666679999999998888877665543 46666665554443334443345555455554443
No 76
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=95.82 E-value=0.02 Score=47.83 Aligned_cols=67 Identities=7% Similarity=0.170 Sum_probs=43.1
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC-hhhHHhh-hcCCCCCceeEeccch
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY-IESEVKD-FWPRYWGGVVVYDQGM 296 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~-~e~~ik~-F~~~~l~f~VLsDp~r 296 (399)
+++++| +|-..|||.|+.....+.++...++..++.+..|-.+. ......+ |.-..+|--++.+.+.
T Consensus 21 ~k~vlv-~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~~ 89 (109)
T cd02993 21 NQSTLV-VLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKNS 89 (109)
T ss_pred CCCEEE-EEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCCC
Confidence 345554 55589999999999999888877876678888877654 2221222 3334555555555543
No 77
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=95.77 E-value=0.017 Score=45.27 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=46.5
Q ss_pred chhhccCC-CEEEEeecCCCCcchHHHHHHHHhccchhh-hcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842 223 ALELWRES-PAVLLCIRRPGCIMCRAEAHQLYAKKPIFD-ALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG 295 (399)
Q Consensus 223 LsdL~~~~-pvVLvFyRg~gCP~Cr~el~~L~e~~pef~-alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~ 295 (399)
+.+...++ ++||.|+. .||+.|+.....+.+....++ ..++.++.|-.+......+.|.-..+|--++.+++
T Consensus 8 ~~~~i~~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 8 FDELVKDSKDVLVEFYA-PWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred HHHHHhCCCcEEEEEEC-CCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 44555555 56665555 799999999999988777775 55677777776653332344432455555666666
No 78
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.016 Score=53.17 Aligned_cols=86 Identities=16% Similarity=0.098 Sum_probs=68.4
Q ss_pred CceechhhccCCCEEEEeecCCCCcchHH-HHHHHHhccchhhhcCCeEEE-EecCChhhHHhhhcC-CCC--CceeEec
Q 015842 219 PPMKALELWRESPAVLLCIRRPGCIMCRA-EAHQLYAKKPIFDALGIQLFA-VLHEYIESEVKDFWP-RYW--GGVVVYD 293 (399)
Q Consensus 219 ~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~-el~~L~e~~pef~alGV~LVa-IspE~~e~~ik~F~~-~~l--~f~VLsD 293 (399)
..++..+|++++++||+-+.+...|-|.. ++-.+.++.++|++.||.-|+ |+-.++ -....|.+ .+. ...++.|
T Consensus 27 ~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVND~-FVm~AWak~~g~~~~I~fi~D 105 (165)
T COG0678 27 VDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVNDA-FVMNAWAKSQGGEGNIKFIPD 105 (165)
T ss_pred ccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeCcH-HHHHHHHHhcCCCccEEEecC
Confidence 47788999999999999999999999998 999999999999999998555 444433 22344443 222 4568999
Q ss_pred cchHHHHHhCCC
Q 015842 294 QGMEFFKALGGG 305 (399)
Q Consensus 294 p~r~lYkaLGl~ 305 (399)
.+..+-+++|+.
T Consensus 106 g~geFTk~~Gm~ 117 (165)
T COG0678 106 GNGEFTKAMGML 117 (165)
T ss_pred CCchhhhhcCce
Confidence 999999999986
No 79
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=95.63 E-value=0.021 Score=49.14 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=44.7
Q ss_pred cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChh-hHHhhhcCC--CCCceeEeccchHHHH
Q 015842 228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIE-SEVKDFWPR--YWGGVVVYDQGMEFFK 300 (399)
Q Consensus 228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e-~~ik~F~~~--~l~f~VLsDp~r~lYk 300 (399)
+++|++|.|+ ..||+.|+.....+.+. +...+.+..+|.|--+..+ ...+.|... ++|.-++.|++.++-+
T Consensus 18 ~~kpVlV~F~-a~WC~~C~~~~~~~~~~-~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 18 SGKPLMLLIH-KTWCGACKALKPKFAES-KEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred cCCcEEEEEe-CCcCHHHHHHHHHHhhh-HHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 3556666655 79999999999988775 3344455566666433221 112445432 4888899998865544
No 80
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=95.62 E-value=0.035 Score=46.80 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=44.4
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842 230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG 295 (399)
Q Consensus 230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~ 295 (399)
+..+|+.|-..||+.|+.....+.++..+++..++.++.|-.+........|.-...|--++...+
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 445666677899999999999999888888766788888876554433444443444433433433
No 81
>PRK09381 trxA thioredoxin; Provisional
Probab=95.50 E-value=0.017 Score=47.78 Aligned_cols=70 Identities=9% Similarity=0.055 Sum_probs=44.4
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHH
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFK 300 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYk 300 (399)
++++||.|| ..|||.|+.....|.++..++.. ++.++.|-.+......+.|.-..+|--++...+..+++
T Consensus 21 ~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~ 90 (109)
T PRK09381 21 DGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 90 (109)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEEEE
Confidence 556655555 56999999999888887766654 47778887765544334444345555455554444433
No 82
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=95.39 E-value=0.046 Score=37.58 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=40.7
Q ss_pred EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHh---hhcCCCCCceeEeccc
Q 015842 235 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVK---DFWPRYWGGVVVYDQG 295 (399)
Q Consensus 235 vFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik---~F~~~~l~f~VLsDp~ 295 (399)
++|...||++|......+.+. .....++.++.|..+....... .+.....|.-++.|++
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred EEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 456678999999999999887 5666789999998776654222 2222455555666654
No 83
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=95.36 E-value=0.017 Score=46.64 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=33.2
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC-CeEEEEec
Q 015842 223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG-IQLFAVLH 271 (399)
Q Consensus 223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG-V~LVaIsp 271 (399)
+.++.++++.+++.|-..||+.|+.....+.+....+...+ +.++.|-.
T Consensus 10 ~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~ 59 (104)
T cd02997 10 FRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDC 59 (104)
T ss_pred HHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEEC
Confidence 45555655566677777899999999988888777776423 33443433
No 84
>PTZ00051 thioredoxin; Provisional
Probab=95.36 E-value=0.014 Score=47.05 Aligned_cols=68 Identities=9% Similarity=-0.021 Sum_probs=39.8
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEe
Q 015842 223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVY 292 (399)
Q Consensus 223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLs 292 (399)
+.++.+.++.++++|-..||+.|+.....|.+...++ .++.++.|-.+......+.|.-..+|--++.
T Consensus 11 ~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 78 (98)
T PTZ00051 11 FESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEY--TKMVFVKVDVDELSEVAEKENITSMPTFKVF 78 (98)
T ss_pred HHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc--CCcEEEEEECcchHHHHHHCCCceeeEEEEE
Confidence 3445555555555555789999999988887765544 2467777765543333444432344433333
No 85
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=95.33 E-value=0.0081 Score=44.65 Aligned_cols=51 Identities=31% Similarity=0.492 Sum_probs=47.2
Q ss_pred HHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhhcccc-cccccccc
Q 015842 38 EIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKR-GHMARFKD 89 (399)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 89 (399)
++..||+.-++=+|++.+...|.+...|++++..+|. +.|++. ||..+++.
T Consensus 6 ~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l~~~dL~-~lgi~~~g~r~~i~~ 57 (63)
T cd00166 6 DVAEWLESLGLGQYADNFRENGIDGDLLLLLTEEDLK-ELGITLPGHRKKILK 57 (63)
T ss_pred HHHHHHHHcChHHHHHHHHHcCCCHHHHhHCCHHHHH-HcCCCCHHHHHHHHH
Confidence 6788999999999999999999999999999999999 999998 99877653
No 86
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=95.30 E-value=0.03 Score=45.01 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=44.9
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842 230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF 298 (399)
Q Consensus 230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l 298 (399)
+..||+.|-..||+.|+.....|.++..++.. .+.++.|-.+.-....+.|.-..+|--++.+.++.+
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence 33455555669999999999999888777754 366667766555443444544566766666655443
No 87
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=95.26 E-value=0.049 Score=44.57 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=42.6
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC--hhhHHhhhcCCCCCceeEeccch
Q 015842 230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY--IESEVKDFWPRYWGGVVVYDQGM 296 (399)
Q Consensus 230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~--~e~~ik~F~~~~l~f~VLsDp~r 296 (399)
+..+|+.|-..||+.|+.....+.++..++.. .+.++.|-.+. .....+.|.-..+|--++.+++.
T Consensus 18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCC
Confidence 44455556668999999988888877666643 47778887665 22223444435566666666665
No 88
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=95.23 E-value=0.028 Score=44.95 Aligned_cols=76 Identities=14% Similarity=0.080 Sum_probs=45.1
Q ss_pred hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC-CeEEEEecCChhhHHhhhcCCCCCceeEeccchHHH
Q 015842 224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG-IQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFF 299 (399)
Q Consensus 224 sdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG-V~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lY 299 (399)
.+...+++++++.|--.||+.|+.....|.+....++..+ +.++.|-.+......+.|.-...|--++.+++...+
T Consensus 7 ~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~~ 83 (102)
T TIGR01126 7 DDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKPV 83 (102)
T ss_pred HHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcce
Confidence 3444455666666677899999998777777666665443 555555444333223334334566556666666543
No 89
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=95.22 E-value=0.049 Score=44.86 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=40.5
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcC--CeEEEEecCChhhHHhhhcCCCCCceeEec
Q 015842 230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG--IQLFAVLHEYIESEVKDFWPRYWGGVVVYD 293 (399)
Q Consensus 230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG--V~LVaIspE~~e~~ik~F~~~~l~f~VLsD 293 (399)
+..++++|-..|||.|+.....|.+...+++..| +.+..|-.+......+.|.-..+|--++.+
T Consensus 15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 15 EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLK 80 (104)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEc
Confidence 4467788889999999999999988877776554 445555544332223334323444444443
No 90
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=95.15 E-value=0.054 Score=44.82 Aligned_cols=39 Identities=8% Similarity=0.050 Sum_probs=29.7
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842 223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 261 (399)
Q Consensus 223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a 261 (399)
+.+..+..+.+|++|-..||+.|+.....+.+...+++.
T Consensus 11 f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~ 49 (108)
T cd02996 11 IDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKE 49 (108)
T ss_pred HHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhh
Confidence 345556666777778899999999999988877766643
No 91
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.12 E-value=0.02 Score=44.28 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=33.4
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 272 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE 272 (399)
++++++.|+ ..|||+|+.....|.+...++.. ++.++.|-..
T Consensus 32 ~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 32 GKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred CceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 667888877 99999999998888887777765 5677777653
No 92
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=95.11 E-value=0.011 Score=44.95 Aligned_cols=52 Identities=29% Similarity=0.494 Sum_probs=46.7
Q ss_pred HHHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhhcccc-cccccccc
Q 015842 37 LEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKR-GHMARFKD 89 (399)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 89 (399)
=++..||..-+|=+|++.++..-.+...|+.++..||.. .|++. ||..|++.
T Consensus 6 ~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~lt~~dL~~-lgi~~~ghr~ki~~ 58 (64)
T PF00536_consen 6 EDVSEWLKSLGLEQYAENFEKNYIDGEDLLSLTEEDLEE-LGITKLGHRKKILR 58 (64)
T ss_dssp HHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTSCHHHHHH-TT-SSHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCchHHHHHhcCHHHHHH-cCCCCHHHHHHHHH
Confidence 468899999999999999988888999999999999999 99999 99988764
No 93
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=95.09 E-value=0.02 Score=45.94 Aligned_cols=65 Identities=12% Similarity=0.060 Sum_probs=39.7
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842 230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM 296 (399)
Q Consensus 230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r 296 (399)
+++||.|+ ..||+.|+.....|.++..++ ..++.++.|-.+......+.|.-..+|--++.+.++
T Consensus 15 ~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 15 KLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred CEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 45555555 899999999988888776665 346677777544333323444434555444444444
No 94
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=95.03 E-value=0.033 Score=44.20 Aligned_cols=68 Identities=13% Similarity=0.178 Sum_probs=42.9
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHH
Q 015842 230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFF 299 (399)
Q Consensus 230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lY 299 (399)
+++||.|| ..||+.|+.....|.+...++.. .+.++.|-.+......+.|.-..+|--++.+.+...+
T Consensus 15 ~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 82 (101)
T TIGR01068 15 KPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVD 82 (101)
T ss_pred CcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEee
Confidence 35665555 68999999999998887766642 4777777655444334455434555555555544333
No 95
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=95.00 E-value=0.024 Score=49.22 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=35.4
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842 223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 272 (399)
Q Consensus 223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE 272 (399)
+.+..+++..++++|-+.|||+|+...--|.+...+ .++.++-|--+
T Consensus 16 ~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd 62 (122)
T TIGR01295 16 ALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSE 62 (122)
T ss_pred HHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECC
Confidence 555667778888888899999999998888877655 34666666543
No 96
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=94.92 E-value=0.093 Score=51.69 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=36.5
Q ss_pred ceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCCh
Q 015842 220 PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYI 274 (399)
Q Consensus 220 ~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~ 274 (399)
.-.+.+| ++.--+++||| ..||||..++--|+....+ .|+.+++||-+..
T Consensus 142 ~~~i~~l-a~~~gL~fFy~-~~C~~C~~~apil~~fa~~---ygi~v~~VS~DG~ 191 (256)
T TIGR02739 142 EKAIQQL-SQSYGLFFFYR-GKSPISQKMAPVIQAFAKE---YGISVIPISVDGT 191 (256)
T ss_pred HHHHHHH-HhceeEEEEEC-CCCchhHHHHHHHHHHHHH---hCCeEEEEecCCC
Confidence 3345565 34467888888 6799999988888766544 4999999997653
No 97
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=94.87 E-value=0.055 Score=44.14 Aligned_cols=50 Identities=16% Similarity=0.076 Sum_probs=34.5
Q ss_pred hhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChh
Q 015842 225 ELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIE 275 (399)
Q Consensus 225 dL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e 275 (399)
....++..++++|-..||+.|+.....+.++..+++. .+.++.|-.+.-.
T Consensus 13 ~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~~ 62 (101)
T cd03003 13 AAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDDR 62 (101)
T ss_pred HHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCccH
Confidence 3334444455555579999999999998887777754 3677777766543
No 98
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=94.83 E-value=0.11 Score=50.92 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=36.2
Q ss_pred echhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCCh
Q 015842 222 KALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYI 274 (399)
Q Consensus 222 sLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~ 274 (399)
.+.+|- ++--+++||| ..||||..++--|+....+. |..|++||-+..
T Consensus 137 ~i~~la-~~~GL~fFy~-s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~ 184 (248)
T PRK13703 137 AIAKLA-EHYGLMFFYR-GQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGV 184 (248)
T ss_pred HHHHHH-hcceEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCCC
Confidence 356653 4467888888 67999999998887765544 999999997643
No 99
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=94.41 E-value=0.097 Score=41.98 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=40.3
Q ss_pred CEEEEeecCCCCcchHHHHHHHHhccchhh-hcCCeEEEEecCC-hhhHHhhhcCCCCCceeEeccc
Q 015842 231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFD-ALGIQLFAVLHEY-IESEVKDFWPRYWGGVVVYDQG 295 (399)
Q Consensus 231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~-alGV~LVaIspE~-~e~~ik~F~~~~l~f~VLsDp~ 295 (399)
++||.|+ ..||+.|+.....+.++..+++ ..++.++.|-... .....+.|.-...|.-++.+++
T Consensus 20 ~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~ 85 (105)
T cd02998 20 DVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKG 85 (105)
T ss_pred cEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCC
Confidence 5565555 8999999988888887776665 2346666666554 3333444443455655555555
No 100
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=94.38 E-value=0.14 Score=41.23 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=40.3
Q ss_pred CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842 231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG 295 (399)
Q Consensus 231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~ 295 (399)
+++|.|+ ..||+.|+.....+.+...++.. .+.++.|-.+......+.|.-...|--++.+.+
T Consensus 20 ~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 20 VWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred cEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCccCEEEEECCC
Confidence 4666666 78999999998888776655543 466666765544433344433455555566655
No 101
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=94.23 E-value=0.13 Score=41.24 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=31.7
Q ss_pred CEEEEeecCCCCcchHHHHHHHHhccchhhh-cCCeEEEEecCC
Q 015842 231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA-LGIQLFAVLHEY 273 (399)
Q Consensus 231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a-lGV~LVaIspE~ 273 (399)
..++++|-..||+.|+.....+.+....++. ..+.++.|-.+.
T Consensus 19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (104)
T cd02995 19 KDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA 62 (104)
T ss_pred CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc
Confidence 4555666779999999999999888777765 356666666544
No 102
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=93.99 E-value=0.16 Score=42.10 Aligned_cols=42 Identities=7% Similarity=-0.131 Sum_probs=32.3
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842 230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 273 (399)
Q Consensus 230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~ 273 (399)
++.||+.|-..||+.|+.....|.++..++ .++.++.|..+.
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~ 56 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDE 56 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCC
Confidence 456666677889999999988888877666 467888887554
No 103
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=93.74 E-value=0.2 Score=40.67 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=38.9
Q ss_pred hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCC
Q 015842 224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWG 287 (399)
Q Consensus 224 sdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~ 287 (399)
.++.++ ++ |+.|-..||+.|+.....+.++...++..++.+..|-.+......+.|.-..+|
T Consensus 12 ~~~~~~-~~-lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 73 (101)
T cd02994 12 TLVLEG-EW-MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALP 73 (101)
T ss_pred HHHhCC-CE-EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccC
Confidence 344443 44 466667899999999999888776665556777777554433323344323334
No 104
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.6 Score=43.12 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=57.3
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe--------cCChhhHHhhhcC--CCC
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL--------HEYIESEVKDFWP--RYW 286 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs--------pE~~e~~ik~F~~--~~l 286 (399)
+|++++|++ |++ .|||+.=--.-|.|-- |...|..++..+++.|-.++++= |++.+ +|+.|+. -+.
T Consensus 14 ~G~~~~l~~-~~G-kVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~e-EI~~fC~~~YgV 89 (162)
T COG0386 14 DGEPVSLSD-YKG-KVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDE-EIAKFCQLNYGV 89 (162)
T ss_pred CCCCccHHH-hCC-cEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHH-HHHHHHHhccCc
Confidence 599999999 454 6777777778898875 88999999999999999999884 34433 5999996 346
Q ss_pred CceeEec
Q 015842 287 GGVVVYD 293 (399)
Q Consensus 287 ~f~VLsD 293 (399)
.||+++-
T Consensus 90 tFp~f~K 96 (162)
T COG0386 90 TFPMFSK 96 (162)
T ss_pred eeeeeeE
Confidence 7887753
No 105
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=93.67 E-value=0.17 Score=41.28 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=41.3
Q ss_pred EEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc-hHHH
Q 015842 232 AVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG-MEFF 299 (399)
Q Consensus 232 vVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~-r~lY 299 (399)
.+|+.|--.||+.|+.....+.++..++.. ++.++.|-.+......+.|.-..+|--++.+.+ ...+
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 88 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASKYH 88 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCCce
Confidence 445555568999999999999888777643 477777776654432344433444434444444 4433
No 106
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=93.25 E-value=0.22 Score=42.83 Aligned_cols=66 Identities=9% Similarity=0.007 Sum_probs=42.6
Q ss_pred ccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHH-hhhc-CCCCCceeEec
Q 015842 227 WRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEV-KDFW-PRYWGGVVVYD 293 (399)
Q Consensus 227 ~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~i-k~F~-~~~l~f~VLsD 293 (399)
..+.+.+|+.|-..||+.|+...-.+.++..+++.. +.++.|-.+...... +.|. ..+..+-+|-|
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~ 93 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQGKCRKQKHFFYFPVIHLYYR 93 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCChHHHHHhcCCcccCEEEEEEC
Confidence 345556666667999999999988888877777542 677777666544333 2454 33444556654
No 107
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=92.91 E-value=0.19 Score=39.88 Aligned_cols=65 Identities=11% Similarity=0.119 Sum_probs=40.2
Q ss_pred cCCCEEEEeecCCCCcchHHHHHHHHhc--cchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEecc
Q 015842 228 RESPAVLLCIRRPGCIMCRAEAHQLYAK--KPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQ 294 (399)
Q Consensus 228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~--~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp 294 (399)
+++|++|.| ...||+.|+..-+.+.+. ..++-..+.-+|-|-.+..+... .+...++|.-++.||
T Consensus 16 ~~kpvlv~f-~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 16 EGKPVLVDF-GADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-QFDRQGYPTFFFLDP 82 (82)
T ss_dssp HTSEEEEEE-ETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-HHHHCSSSEEEEEET
T ss_pred cCCCEEEEE-ECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-HhCCccCCEEEEeCC
Confidence 345666555 689999999998887543 22212246666666655554322 232357787788876
No 108
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=92.90 E-value=0.14 Score=46.44 Aligned_cols=52 Identities=8% Similarity=-0.044 Sum_probs=38.2
Q ss_pred CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhc
Q 015842 231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFW 282 (399)
Q Consensus 231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~ 282 (399)
..+|+.|-..||+.|+.....|.++..++...+++++.|-.+......+.|.
T Consensus 48 ~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~ 99 (152)
T cd02962 48 VTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFR 99 (152)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcC
Confidence 4555566667999999999999988877766678889988665544344444
No 109
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=92.29 E-value=0.25 Score=50.19 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=44.6
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC--CeEEEEecCChhhHHhhhcCCCCC
Q 015842 223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG--IQLFAVLHEYIESEVKDFWPRYWG 287 (399)
Q Consensus 223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG--V~LVaIspE~~e~~ik~F~~~~l~ 287 (399)
+.++.++++.++++|-..||+.|+.....+.++...+++.+ +.++.|-++.-....+.|.-..+|
T Consensus 11 ~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 77 (462)
T TIGR01130 11 FDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYP 77 (462)
T ss_pred HHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcccc
Confidence 44555666667777778999999999999988877787766 777777665543323344323444
No 110
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=92.22 E-value=0.46 Score=40.38 Aligned_cols=66 Identities=9% Similarity=0.157 Sum_probs=38.3
Q ss_pred cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842 228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG 295 (399)
Q Consensus 228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~ 295 (399)
.+...|++||--.|||+|+....-|.+...+. -.++++.|--+........|.-...|.-++.+.+
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g 85 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDG 85 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCC
Confidence 33334667777889999997777776655443 2356666654443333344432445555555443
No 111
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=92.08 E-value=0.16 Score=44.42 Aligned_cols=42 Identities=10% Similarity=0.015 Sum_probs=30.4
Q ss_pred CCCEEEEeecC------CCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842 229 ESPAVLLCIRR------PGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH 271 (399)
Q Consensus 229 ~~pvVLvFyRg------~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp 271 (399)
++|+||.|+-. .|||.|+...-.|.++..++. .++.++-|--
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdv 68 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDV 68 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEc
Confidence 46777777765 999999998888877766654 2466666653
No 112
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=91.92 E-value=0.38 Score=37.15 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=28.1
Q ss_pred EEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842 233 VLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 272 (399)
Q Consensus 233 VLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE 272 (399)
.|.+|-..|||+|......|.++..++.. .+.++-|--+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~ 40 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVM 40 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCc
Confidence 45566679999999999999887666542 2666666543
No 113
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=91.87 E-value=0.064 Score=40.91 Aligned_cols=51 Identities=31% Similarity=0.574 Sum_probs=45.8
Q ss_pred HHhhhccchhhhhhhHHHHHcCCCh-HHHhccCcccchhhhcc-cccccccccc
Q 015842 38 EIRSYLHDRALMQYADIFEASGKSL-PELLNLSTGDLSSQFGM-KRGHMARFKD 89 (399)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 89 (399)
++..||...||=+|++.++..|.+. ..|..++..+|- +.|+ ..||..+++.
T Consensus 8 ~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~-~lGI~~~~~r~kll~ 60 (66)
T PF07647_consen 8 DVAEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLK-ELGITNLGHRRKLLS 60 (66)
T ss_dssp HHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHH-HTTTTHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHH-HcCCCCHHHHHHHHH
Confidence 5678999999999999999999999 999999999996 9999 7788776654
No 114
>PTZ00102 disulphide isomerase; Provisional
Probab=91.53 E-value=0.35 Score=49.88 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=45.9
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC--CeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842 223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG--IQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM 296 (399)
Q Consensus 223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG--V~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r 296 (399)
+.++..+++.++++|-..||+.|+..+..+.++...++..+ +.++-|-+..-....+.|.-...|--++.+.+.
T Consensus 42 f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 42 FDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGN 117 (477)
T ss_pred HHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCc
Confidence 34555666667777778999999999988888777776654 555556554433333444433444333344443
No 115
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=91.51 E-value=0.35 Score=42.43 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=39.4
Q ss_pred hhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe--cCChhhHHhh--------hcCCCCCceeEecc
Q 015842 225 ELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL--HEYIESEVKD--------FWPRYWGGVVVYDQ 294 (399)
Q Consensus 225 dL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs--pE~~e~~ik~--------F~~~~l~f~VLsDp 294 (399)
..-++++-|+++|-..||+.|+..-...-....-.+.++-..|.|- .+......+. |...++|.-|+.||
T Consensus 10 ~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~ 89 (124)
T cd02955 10 KARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTP 89 (124)
T ss_pred HHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 3334444455667889999999776643221111112222444443 2221111111 22357898999999
Q ss_pred chH-HHHH
Q 015842 295 GME-FFKA 301 (399)
Q Consensus 295 ~r~-lYka 301 (399)
+.+ +|..
T Consensus 90 ~G~~~~~~ 97 (124)
T cd02955 90 DLKPFFGG 97 (124)
T ss_pred CCCEEeee
Confidence 854 4443
No 116
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=91.08 E-value=0.56 Score=39.82 Aligned_cols=40 Identities=23% Similarity=0.120 Sum_probs=28.3
Q ss_pred CEEEEeecCCCCcchHHHHHHHHhccchhhhc-C-CeEEEEe
Q 015842 231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL-G-IQLFAVL 270 (399)
Q Consensus 231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al-G-V~LVaIs 270 (399)
..||+.|-..||+.|+.....+.++..+++.. + +.+..|-
T Consensus 20 ~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd 61 (114)
T cd02992 20 SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVD 61 (114)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEe
Confidence 35555566899999999999998887777542 2 4554454
No 117
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=90.42 E-value=0.62 Score=44.98 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=39.1
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG 295 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~ 295 (399)
+++++|.|| -.||+.|+.....+.++..+++. .+.+..|-.+......+.|.-..+|--++.+.+
T Consensus 52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G 116 (224)
T PTZ00443 52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDATRALNLAKRFAIKGYPTLLLFDKG 116 (224)
T ss_pred CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcccHHHHHHcCCCcCCEEEEEECC
Confidence 356766665 69999999998888877666643 244544544333333444443455555555544
No 118
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=90.36 E-value=0.44 Score=40.02 Aligned_cols=65 Identities=9% Similarity=0.135 Sum_probs=40.3
Q ss_pred cCCCEEEEeecCCCCcchHHHHHHHHhc---cchhhhcCCeEEEEec--CChhh--HHhhhcCCCCCceeEeccc
Q 015842 228 RESPAVLLCIRRPGCIMCRAEAHQLYAK---KPIFDALGIQLFAVLH--EYIES--EVKDFWPRYWGGVVVYDQG 295 (399)
Q Consensus 228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~---~pef~alGV~LVaIsp--E~~e~--~ik~F~~~~l~f~VLsDp~ 295 (399)
++++.|++++...||++|+...+..-.. ...+++ +.|.+.. .+++. ....|....+|.-++.|+.
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~ 86 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPR 86 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCc
Confidence 4567888999999999999988865432 233433 4444442 22221 1222323578888999993
No 119
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=90.18 E-value=0.34 Score=41.24 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=49.0
Q ss_pred hhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhCC
Q 015842 225 ELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGG 304 (399)
Q Consensus 225 dL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLGl 304 (399)
+...+...||+.|-..||+-|+.....|.++..++ .+++++-|-.+......++|.-..+|--++...+..+.+.-|.
T Consensus 17 ~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~--~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 17 EIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKH--LETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVDRIVGF 94 (113)
T ss_pred HHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHc--CCCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEEEEECc
Confidence 33444455666777899999998888777765544 3577877776655443455544556655666555555544444
No 120
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=89.43 E-value=0.63 Score=45.50 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=55.3
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC---eEEEEecCChhhHHhh-hcCCCCC--ceeEe--ccchHHHHH
Q 015842 230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI---QLFAVLHEYIESEVKD-FWPRYWG--GVVVY--DQGMEFFKA 301 (399)
Q Consensus 230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV---~LVaIspE~~e~~ik~-F~~~~l~--f~VLs--Dp~r~lYka 301 (399)
|.|+|+.+=-.+|.+|..++..|.++...|+..|. ..++|.+....+.+.. ..++..+ ++||- +.+..++..
T Consensus 26 G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~q~dvW~~ 105 (238)
T PF04592_consen 26 GHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDENQPDVWEL 105 (238)
T ss_pred CcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCccccCHHHH
Confidence 46666666667999999999999999988887765 6777776655432221 1124455 89996 466899999
Q ss_pred hCCCc
Q 015842 302 LGGGK 306 (399)
Q Consensus 302 LGl~r 306 (399)
|+..+
T Consensus 106 L~G~k 110 (238)
T PF04592_consen 106 LNGSK 110 (238)
T ss_pred hCCCc
Confidence 98875
No 121
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=89.10 E-value=0.22 Score=37.16 Aligned_cols=52 Identities=29% Similarity=0.412 Sum_probs=44.2
Q ss_pred HHHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhhcc-ccccccccc
Q 015842 37 LEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGM-KRGHMARFK 88 (399)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 88 (399)
-++..||..-|+-+|++.+...|.+..+|+.++..+.-.+.|+ ..||-.+.+
T Consensus 7 ~~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll 59 (68)
T smart00454 7 ESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKIL 59 (68)
T ss_pred HHHHHHHHHCChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHH
Confidence 4678899999999999999999999999999995555577999 568877654
No 122
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=88.69 E-value=1.5 Score=32.38 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=22.1
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH 271 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp 271 (399)
|.+|-..|||+|+.....|.+ .|+....|-.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi 32 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDV 32 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEec
Confidence 568889999999987655543 5666666543
No 123
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=88.32 E-value=0.53 Score=42.00 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=41.3
Q ss_pred cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe--cCChhhHHhhhcCCCCCceeEeccchHHHHHh
Q 015842 228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL--HEYIESEVKDFWPRYWGGVVVYDQGMEFFKAL 302 (399)
Q Consensus 228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs--pE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaL 302 (399)
++++.|+++|-..|||+|+..-...-+...-.+.+.=..|+|. .+..+...... ..+.|--+|.|++.++-..+
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~-g~~vPtivFld~~g~vi~~i 96 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPD-GQYVPRIMFVDPSLTVRADI 96 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCcc-CcccCeEEEECCCCCCcccc
Confidence 4444455667789999999988887543322222222445443 22221101111 14677789999997665544
No 124
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=88.24 E-value=3.9 Score=35.49 Aligned_cols=109 Identities=11% Similarity=0.134 Sum_probs=71.8
Q ss_pred ccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhCCCc
Q 015842 227 WRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGK 306 (399)
Q Consensus 227 ~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLGl~r 306 (399)
|++ ++||+|-...--+.=..+...|.+....|.+..+.++.|....... .+ ..+=.+....+++.|++.
T Consensus 8 w~~-R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~-------~~--~~~~~~~~~~lr~~l~~~- 76 (118)
T PF13778_consen 8 WKN-RLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARS-------PG--KPLSPEDIQALRKRLRIP- 76 (118)
T ss_pred CcC-ceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccc-------cc--CcCCHHHHHHHHHHhCCC-
Confidence 554 5677888888888889999999999999999999888887544321 11 000001112233322221
Q ss_pred ccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842 307 LLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ 386 (399)
Q Consensus 307 ~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~ 386 (399)
.++ -.+++||+|| ++... +...+++++|.+.++++.-.
T Consensus 77 ---------------------------------~~~---f~~vLiGKDG-~vK~r-----~~~p~~~~~lf~~ID~MPmR 114 (118)
T PF13778_consen 77 ---------------------------------PGG---FTVVLIGKDG-GVKLR-----WPEPIDPEELFDTIDAMPMR 114 (118)
T ss_pred ---------------------------------CCc---eEEEEEeCCC-cEEEe-----cCCCCCHHHHHHHHhCCccc
Confidence 111 2689999997 67776 55568999999999987544
Q ss_pred hc
Q 015842 387 QR 388 (399)
Q Consensus 387 ~~ 388 (399)
|+
T Consensus 115 q~ 116 (118)
T PF13778_consen 115 QQ 116 (118)
T ss_pred hh
Confidence 43
No 125
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=88.16 E-value=1.5 Score=32.90 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=21.4
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV 269 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaI 269 (399)
|.+|-..|||+|......|.++... ..++.+.-|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~--~~~i~~~~i 36 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL--NPNISAEMI 36 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh--CCceEEEEE
Confidence 4566678999998777766655322 124555555
No 126
>PHA02278 thioredoxin-like protein
Probab=87.68 E-value=1.6 Score=36.87 Aligned_cols=49 Identities=12% Similarity=0.145 Sum_probs=31.3
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842 223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 272 (399)
Q Consensus 223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE 272 (399)
+.+...++..||+.|.-.||+.|+.....|.++..+.. ..++++-|--+
T Consensus 7 ~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd 55 (103)
T PHA02278 7 LNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGD-IKKPILTLNLD 55 (103)
T ss_pred HHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECC
Confidence 34444555566677788999999999888877654422 12455555433
No 127
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=87.54 E-value=1.4 Score=36.15 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=30.1
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 273 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~ 273 (399)
++|+-|.+|-..|||+|..-..-+.++..+.. ++++..|--+.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~ 53 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGAL 53 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHh
Confidence 46999999999999999987766665543332 46666665433
No 128
>smart00594 UAS UAS domain.
Probab=87.46 E-value=1 Score=38.63 Aligned_cols=67 Identities=9% Similarity=0.042 Sum_probs=42.6
Q ss_pred ccCCCEEEEeecCCCCcchHHHHHHHHhc---cchhhhcCCeEEEEe--cCChhh--HHhhhcCCCCCceeEeccch
Q 015842 227 WRESPAVLLCIRRPGCIMCRAEAHQLYAK---KPIFDALGIQLFAVL--HEYIES--EVKDFWPRYWGGVVVYDQGM 296 (399)
Q Consensus 227 ~~~~pvVLvFyRg~gCP~Cr~el~~L~e~---~pef~alGV~LVaIs--pE~~e~--~ik~F~~~~l~f~VLsDp~r 296 (399)
-++++.+++++...||+.|+...++.-.. ...++. ..|.+. -++.+. ....+.-..+|+-++.|+..
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCC
Confidence 35667888999999999999999986543 334433 444443 223321 12223235788888888886
No 129
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=87.45 E-value=1.5 Score=38.02 Aligned_cols=33 Identities=21% Similarity=0.025 Sum_probs=25.6
Q ss_pred cCCCEEEEeecCC-CCcchHHHHHHHHhccchhh
Q 015842 228 RESPAVLLCIRRP-GCIMCRAEAHQLYAKKPIFD 260 (399)
Q Consensus 228 ~~~pvVLvFyRg~-gCP~Cr~el~~L~e~~pef~ 260 (399)
+++++||.|++-+ |||-|+...-.|.++..++.
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~ 59 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP 59 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC
Confidence 4588888888887 89999988777766655553
No 130
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=87.19 E-value=2.1 Score=31.77 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=22.8
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 273 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~ 273 (399)
|+.|-..|||+|...-+-| ++.|++.-.+--+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~ 33 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVDE 33 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGGG
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEccccc
Confidence 4567779999998776666 55666666655433
No 131
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=87.18 E-value=2.4 Score=36.63 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=52.3
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhcCC--CC
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFWPR--YW 286 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp--------E~~e~~ik~F~~~--~l 286 (399)
+|++|+|+++ +++ ++|+.==-.-|.+-. +..+|.+++.++...|-.|+|+=+ ++.+ +++.|++. ..
T Consensus 10 ~G~~v~l~~y-~Gk-v~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~-ei~~~~~~~~~~ 85 (108)
T PF00255_consen 10 DGKPVSLSKY-KGK-VLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNE-EIKEFCKEKFGV 85 (108)
T ss_dssp TSSEEEGGGG-TTS-EEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHH-HHHHHHCHCHT-
T ss_pred CCCEECHHHc-CCC-EEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHH-HHHHHHHhccCC
Confidence 6999999884 654 444444456888988 999999999999999999988742 2222 47888762 45
Q ss_pred CceeEe
Q 015842 287 GGVVVY 292 (399)
Q Consensus 287 ~f~VLs 292 (399)
.|+|+.
T Consensus 86 ~F~vf~ 91 (108)
T PF00255_consen 86 TFPVFE 91 (108)
T ss_dssp SSEEBS
T ss_pred cccceE
Confidence 677654
No 132
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=87.09 E-value=1.1 Score=40.61 Aligned_cols=31 Identities=13% Similarity=-0.034 Sum_probs=22.6
Q ss_pred cCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842 228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF 259 (399)
Q Consensus 228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef 259 (399)
.++++||-|++ .||+-|+...--|.++..++
T Consensus 22 ~~~lVVvdF~A-~WCgpCk~m~p~l~~la~~~ 52 (142)
T PLN00410 22 EERLVVIRFGH-DWDETCMQMDEVLASVAETI 52 (142)
T ss_pred CCCEEEEEEEC-CCChhHHHHHHHHHHHHHHc
Confidence 35566666665 99999998887777765555
No 133
>PLN02309 5'-adenylylsulfate reductase
Probab=86.85 E-value=1.1 Score=47.58 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=36.2
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 272 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE 272 (399)
.+..+|+.|--+||+.|+.....+.++..++...++.++.|-.+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 45667778889999999999888888877787778888888766
No 134
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=86.41 E-value=0.66 Score=37.88 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=22.5
Q ss_pred hhhccCCCEEEEeecC----CCCcchHHHHHHHHhcc
Q 015842 224 LELWRESPAVLLCIRR----PGCIMCRAEAHQLYAKK 256 (399)
Q Consensus 224 sdL~~~~pvVLvFyRg----~gCP~Cr~el~~L~e~~ 256 (399)
.++.++.|+||+ --+ +|||||..-..-|.+..
T Consensus 2 ~~~i~~~~vvvf-~k~~~~~~~Cp~C~~ak~~L~~~~ 37 (90)
T cd03028 2 KKLIKENPVVLF-MKGTPEEPRCGFSRKVVQILNQLG 37 (90)
T ss_pred hhhhccCCEEEE-EcCCCCCCCCcHHHHHHHHHHHcC
Confidence 456777887654 544 69999988777776654
No 135
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=86.34 E-value=1.5 Score=46.84 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=38.5
Q ss_pred chhhcc---CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842 223 ALELWR---ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 273 (399)
Q Consensus 223 LsdL~~---~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~ 273 (399)
+.++.+ .+..||+.|--.||+.|+.....|.++..++...|+.++.|-.+.
T Consensus 361 f~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~ 414 (463)
T TIGR00424 361 IENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG 414 (463)
T ss_pred HHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC
Confidence 445543 455677777889999999999888888777876678888786553
No 136
>PTZ00102 disulphide isomerase; Provisional
Probab=85.77 E-value=1.2 Score=45.89 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=41.5
Q ss_pred cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC-CeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842 228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG-IQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF 298 (399)
Q Consensus 228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG-V~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l 298 (399)
..+..|+++|--.||+.|+.....|.+....++..+ +.++.|-.+.-+.....|.-.++|--++.+.+.+.
T Consensus 373 ~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~ 444 (477)
T PTZ00102 373 KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERT 444 (477)
T ss_pred cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcc
Confidence 334444555558999999999888887766665433 34444443332222344544556666677766543
No 137
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=85.61 E-value=2.8 Score=30.93 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=30.6
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC--CCCCceeEeccc
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP--RYWGGVVVYDQG 295 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~--~~l~f~VLsDp~ 295 (399)
+.+|-..|||+|+.....|.+ .|+....|--+.-....+.|.+ ....+|++.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~ 58 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGD 58 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECC
Confidence 466778899999876555544 3555444443321122334443 235677776654
No 138
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=85.30 E-value=0.94 Score=37.76 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=22.7
Q ss_pred chhhccCCCEEEEeecC----CCCcchHHHHHHHHhc
Q 015842 223 ALELWRESPAVLLCIRR----PGCIMCRAEAHQLYAK 255 (399)
Q Consensus 223 LsdL~~~~pvVLvFyRg----~gCP~Cr~el~~L~e~ 255 (399)
+..+.++.++| +|-.+ .|||||..--.-|.+.
T Consensus 5 v~~~i~~~~Vv-vf~kg~~~~~~Cp~C~~ak~lL~~~ 40 (97)
T TIGR00365 5 IKEQIKENPVV-LYMKGTPQFPQCGFSARAVQILKAC 40 (97)
T ss_pred HHHHhccCCEE-EEEccCCCCCCCchHHHHHHHHHHc
Confidence 45667777765 55665 7999998776666553
No 139
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=84.80 E-value=2.6 Score=32.55 Aligned_cols=35 Identities=9% Similarity=0.195 Sum_probs=23.7
Q ss_pred EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842 235 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 272 (399)
Q Consensus 235 vFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE 272 (399)
+.|-..|||+|+.....|.+.. +. -.+.++-|..+
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~ 36 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLN--VK-PAYEVVELDQL 36 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCC
Confidence 4556799999999888887765 21 12566666644
No 140
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=84.58 E-value=2.7 Score=35.27 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=28.9
Q ss_pred CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842 231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 273 (399)
Q Consensus 231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~ 273 (399)
+.||+.|-..||+.|+.....|.++..++. ++.++-|-.+.
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~ 65 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEK 65 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchh
Confidence 456666777899999988888877666553 56666665443
No 141
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=84.21 E-value=4.3 Score=39.96 Aligned_cols=66 Identities=14% Similarity=-0.005 Sum_probs=40.8
Q ss_pred ccCccccccchhhhcccccccccCCCceechhhccCCC-EEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842 194 IENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESP-AVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 272 (399)
Q Consensus 194 L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~p-vVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE 272 (399)
.|++.-++|. |+.+.+.+++.++. +|.+|++.++=..|.....-+.+.+..-....+++|-|..+
T Consensus 101 FP~l~g~tL~--------------g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~ 166 (252)
T PF05176_consen 101 FPNLQGKTLA--------------GNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLI 166 (252)
T ss_pred CCCCccccCC--------------CCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecc
Confidence 3577666664 78999999998775 46667776666555555553332222222127889888754
Q ss_pred C
Q 015842 273 Y 273 (399)
Q Consensus 273 ~ 273 (399)
.
T Consensus 167 e 167 (252)
T PF05176_consen 167 E 167 (252)
T ss_pred h
Confidence 3
No 142
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=84.09 E-value=2.8 Score=36.74 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=28.5
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842 230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 272 (399)
Q Consensus 230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE 272 (399)
+++||+-|-+.|||-|+....-|.++..++... |.++-|--+
T Consensus 14 ~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD 55 (114)
T cd02986 14 EKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD 55 (114)
T ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc
Confidence 455556666799999999888888777766332 555555444
No 143
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=83.91 E-value=2.3 Score=46.21 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=38.6
Q ss_pred CCCEEEEeecCCCCcchHHHHHHH---HhccchhhhcCCeEEEEecCCh----hhHHhhhcCCCCCceeEeccchHH
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQL---YAKKPIFDALGIQLFAVLHEYI----ESEVKDFWPRYWGGVVVYDQGMEF 298 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L---~e~~pef~alGV~LVaIspE~~----e~~ik~F~~~~l~f~VLsDp~r~l 298 (399)
++|++|.|+ ..||+.|+...... .+...+++ ++.++-|--+.. ....++|.-...|.-++.|++.+.
T Consensus 474 gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 474 GKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred CCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCC
Confidence 456666666 89999999865543 12233332 456655543221 112344444667877888877554
No 144
>PRK10824 glutaredoxin-4; Provisional
Probab=83.70 E-value=1.2 Score=38.97 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=23.9
Q ss_pred chhhccCCCEEEEeecC----CCCcchHHHHHHHHhc
Q 015842 223 ALELWRESPAVLLCIRR----PGCIMCRAEAHQLYAK 255 (399)
Q Consensus 223 LsdL~~~~pvVLvFyRg----~gCP~Cr~el~~L~e~ 255 (399)
+.++.+..|+| +|-.+ +|||||+.-.+-|.+.
T Consensus 8 v~~~I~~~~Vv-vf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 8 IQRQIAENPIL-LYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred HHHHHhcCCEE-EEECCCCCCCCCchHHHHHHHHHHc
Confidence 46677777765 56777 6999998877766665
No 145
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=83.29 E-value=3.9 Score=31.50 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=21.1
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL 270 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs 270 (399)
|.+|-..|||+|+.-..-|.+ .|+....|-
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~d 32 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEIN 32 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CCCceEEEE
Confidence 456777999999887777765 455555553
No 146
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=82.78 E-value=14 Score=36.31 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=49.1
Q ss_pred CCCCCCCCCcccccCccccccchhhhcccccccccCCCc-eechhhcc-CCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842 182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPP-MKALELWR-ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF 259 (399)
Q Consensus 182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~-VsLsdL~~-~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef 259 (399)
....|..|| |.++-+++ |+. .++-|..+ ++|+||.| ...-||.=...+.+++++..++
T Consensus 72 ~a~~G~~AP-----ns~vv~l~--------------g~~~~~ildf~~g~RPLVlnF-GS~TCPpF~~~l~~f~~l~~~f 131 (237)
T PF00837_consen 72 EAKLGGPAP-----NSPVVTLD--------------GQRSCRILDFAKGNRPLVLNF-GSCTCPPFMAKLDAFKRLVEDF 131 (237)
T ss_pred ceeCCCCCC-----CCceEeeC--------------CCcceeHHHhccCCCCeEEEc-ccccchHHHHHHHHHHHHHHHh
Confidence 346788888 66655554 777 88888765 57888776 4556999999999999888888
Q ss_pred hhcCCeEEEEe
Q 015842 260 DALGIQLFAVL 270 (399)
Q Consensus 260 ~alGV~LVaIs 270 (399)
.+ =|..+.|.
T Consensus 132 ~d-~adFl~VY 141 (237)
T PF00837_consen 132 SD-VADFLIVY 141 (237)
T ss_pred hh-hhheehhh
Confidence 65 24555664
No 147
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=81.67 E-value=4.2 Score=38.21 Aligned_cols=61 Identities=10% Similarity=-0.000 Sum_probs=32.7
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeE
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVV 291 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VL 291 (399)
++|++|..|--.|||+|......+.++..+ .-.+.++-|-.+......+.|.-...|--++
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~--~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i 192 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALA--NDKILGEMIEANENPDLAEKYGVMSVPKIVI 192 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHh--cCceEEEEEeCCCCHHHHHHhCCccCCEEEE
Confidence 568888878889999999665444443221 1134444444433333233333234444444
No 148
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=81.33 E-value=19 Score=36.13 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=39.9
Q ss_pred cccCCCceechhhccCCCEEEEeecCCCCc-chHHHHHHHHhccchhhhc-CCe--EEEEecCC
Q 015842 214 VKTKTPPMKALELWRESPAVLLCIRRPGCI-MCRAEAHQLYAKKPIFDAL-GIQ--LFAVLHEY 273 (399)
Q Consensus 214 v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP-~Cr~el~~L~e~~pef~al-GV~--LVaIspE~ 273 (399)
++.+|+.++-.++. .+.++|. |=-..|| .|=.|+.-|.....++++. |+. -|+|+.+.
T Consensus 125 ~d~~Gk~~te~df~-Gkw~LiY-FGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDP 186 (280)
T KOG2792|consen 125 VDHDGKRVTEKDFL-GKWSLIY-FGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDP 186 (280)
T ss_pred EecCCCeecccccc-cceEEEE-ecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCc
Confidence 34579999999974 3455544 4444898 8999999999988888753 333 25666443
No 149
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=80.84 E-value=3.5 Score=33.11 Aligned_cols=43 Identities=9% Similarity=0.044 Sum_probs=31.8
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 273 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~ 273 (399)
++|+++.| ...||+-|+.....|.++..+++.. +.++.|-.+.
T Consensus 12 ~~~~~~~f-~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~ 54 (103)
T cd02982 12 GKPLLVLF-YNKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD 54 (103)
T ss_pred CCCEEEEE-EcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh
Confidence 45766655 5789999999999999988888732 5666665544
No 150
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=80.37 E-value=3.7 Score=38.53 Aligned_cols=66 Identities=11% Similarity=0.242 Sum_probs=34.7
Q ss_pred cCCCEEEEeec--CCCCcchHHHHHHHHhccchhhhcCCeEEEEecC--ChhhHHhhhcCCCCCceeEeccc
Q 015842 228 RESPAVLLCIR--RPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE--YIESEVKDFWPRYWGGVVVYDQG 295 (399)
Q Consensus 228 ~~~pvVLvFyR--g~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE--~~e~~ik~F~~~~l~f~VLsDp~ 295 (399)
+.+-.|++|+- ..|||.|+....-|.++..++. ++++..|..+ ......+.|.=...|--++.+.+
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g 87 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEG 87 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCCcccHHHHHHcCCCccCEEEEEeCC
Confidence 33344444444 2899999998877777655553 3455555443 22222444432334433443333
No 151
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=79.10 E-value=10 Score=35.47 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=53.8
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe-----cCCh--hhHHhhhcC--CCCC
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL-----HEYI--ESEVKDFWP--RYWG 287 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs-----pE~~--e~~ik~F~~--~~l~ 287 (399)
+|+.|+|+.+ + +.|||+.==-.-|.+=..+-.+|..++..++..|-.|+|.= .+.| ..++..|.. -...
T Consensus 23 ~G~~v~l~~y-r-GkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~ 100 (171)
T KOG1651|consen 23 DGEYVSLSQY-R-GKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAE 100 (171)
T ss_pred CCCCccHHHh-C-CeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCC
Confidence 5999999996 3 45777766677899988788899999999999999999974 2333 224677764 2344
Q ss_pred ceeEe
Q 015842 288 GVVVY 292 (399)
Q Consensus 288 f~VLs 292 (399)
|+||.
T Consensus 101 f~if~ 105 (171)
T KOG1651|consen 101 FPIFQ 105 (171)
T ss_pred CccEe
Confidence 55553
No 152
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=78.32 E-value=6.2 Score=30.44 Aligned_cols=55 Identities=13% Similarity=0.245 Sum_probs=30.9
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccc
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG 295 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~ 295 (399)
|.+|-..+||+|+.--+.|.+ .|+..-.|--.........+.. +....|++...+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g 56 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE-------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADG 56 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEECC
Confidence 357888999999988887765 4555544432221111233322 344667555433
No 153
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=78.26 E-value=2.8 Score=36.54 Aligned_cols=74 Identities=12% Similarity=0.009 Sum_probs=38.2
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhCC
Q 015842 230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGG 304 (399)
Q Consensus 230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLGl 304 (399)
...||+.|--.||+-|+...-.|.++..++... +.++-|=-+......+.|.=...|--++.-.++.+.+..|.
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~ 87 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGT 87 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCC
Confidence 345666677899999998877666665555321 34444444433322333322333333333334444444444
No 154
>PHA03050 glutaredoxin; Provisional
Probab=76.48 E-value=2.6 Score=36.08 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=21.1
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhc
Q 015842 223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAK 255 (399)
Q Consensus 223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~ 255 (399)
+.++..+.+++ .|-..|||||+.--.-|.+.
T Consensus 6 v~~~i~~~~V~--vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 6 VQQRLANNKVT--IFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred HHHHhccCCEE--EEECCCChHHHHHHHHHHHc
Confidence 35566666643 56788999998766666554
No 155
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=76.22 E-value=3 Score=36.68 Aligned_cols=43 Identities=19% Similarity=0.094 Sum_probs=27.7
Q ss_pred CCCEEEEee------cCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842 229 ESPAVLLCI------RRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 272 (399)
Q Consensus 229 ~~pvVLvFy------Rg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE 272 (399)
++++.|+|+ -..|||.|+.----+.+...... .++.+|-|.-+
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-~~~~lv~v~VG 67 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-ENARLVYVEVG 67 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-TTEEEEEEE--
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-CCceEEEEEcC
Confidence 357777777 44699999988877777655422 26777666533
No 156
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=75.85 E-value=2.5 Score=35.33 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=19.1
Q ss_pred hhccCCCEEEEeecCCCCcchHHHHHHHHhc
Q 015842 225 ELWRESPAVLLCIRRPGCIMCRAEAHQLYAK 255 (399)
Q Consensus 225 dL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~ 255 (399)
+++++.|++| | =..|||||+..-+-|.+.
T Consensus 3 ~~i~~~~Vvv-y-sk~~Cp~C~~ak~~L~~~ 31 (99)
T TIGR02189 3 RMVSEKAVVI-F-SRSSCCMCHVVKRLLLTL 31 (99)
T ss_pred hhhccCCEEE-E-ECCCCHHHHHHHHHHHHc
Confidence 4556667553 3 349999999766655554
No 157
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=75.71 E-value=9.9 Score=28.90 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=16.8
Q ss_pred EEeecCCCCcchHHHHHHHHh
Q 015842 234 LLCIRRPGCIMCRAEAHQLYA 254 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e 254 (399)
|.+|-..|||+|..-...|.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~ 22 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK 22 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456778999999987777765
No 158
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=73.87 E-value=4.6 Score=35.57 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=43.3
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEE--EecCChh-hHHhhhcC-CCCCceeEeccchHHHHHhCCC
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFA--VLHEYIE-SEVKDFWP-RYWGGVVVYDQGMEFFKALGGG 305 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVa--IspE~~e-~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~ 305 (399)
|.+|-..+|++|+...+-|.+. |+.... |..+.+. .++..+.. ...++.-+.......|+.+++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-------gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~~k~l~~~ 70 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-------DIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKVFQKLNVD 70 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHHHHhCCCC
Confidence 6789999999999877766654 444333 3322221 23555553 3345667788999999999886
No 159
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=73.80 E-value=8.3 Score=35.56 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=34.8
Q ss_pred EEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCC-ceeEec
Q 015842 232 AVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWG-GVVVYD 293 (399)
Q Consensus 232 vVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~-f~VLsD 293 (399)
.||++|-..||+-|+.....|.++..++. +++++=|-.+.. .....|.-..+| +-+|-|
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~ 144 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT-GASDEFDTDALPALLVYKG 144 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch-hhHHhCCCCCCCEEEEEEC
Confidence 45555566799999977776766655442 467777766543 223445434444 334444
No 160
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=73.53 E-value=11 Score=29.69 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=27.4
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhh
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDF 281 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F 281 (399)
|.|| ..|||.|+.....+.+...+. |..+-.+--+.++. +..+
T Consensus 3 i~~~-a~~C~~C~~~~~~~~~~~~e~---~~~~~~~~v~~~~~-a~~~ 45 (76)
T TIGR00412 3 IQIY-GTGCANCQMTEKNVKKAVEEL---GIDAEFEKVTDMNE-ILEA 45 (76)
T ss_pred EEEE-CCCCcCHHHHHHHHHHHHHHc---CCCeEEEEeCCHHH-HHHc
Confidence 4565 499999999988888776654 44444444444443 3443
No 161
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=73.23 E-value=3.6 Score=34.96 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=21.7
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhcc
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYAKK 256 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~ 256 (399)
+.|+.|..|=-++||+|+..-..+.+..
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~ 31 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLL 31 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHH
Confidence 4567777777999999998877776644
No 162
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=73.08 E-value=4.6 Score=34.68 Aligned_cols=39 Identities=26% Similarity=0.507 Sum_probs=25.7
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 015842 223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL 270 (399)
Q Consensus 223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs 270 (399)
..++..+.||| +|-+ .|||||.. +..|-.. .|+...+|-
T Consensus 7 v~~~i~~~~VV-ifSK-s~C~~c~~-~k~ll~~------~~v~~~vvE 45 (104)
T KOG1752|consen 7 VRKMISENPVV-IFSK-SSCPYCHR-AKELLSD------LGVNPKVVE 45 (104)
T ss_pred HHHHhhcCCEE-EEEC-CcCchHHH-HHHHHHh------CCCCCEEEE
Confidence 45667777865 5666 99999988 6655433 455555553
No 163
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=72.89 E-value=3.4 Score=32.67 Aligned_cols=30 Identities=20% Similarity=0.518 Sum_probs=21.0
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL 270 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs 270 (399)
|.+|-..|||+|+.--+.|.+ .|+....|-
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~id 39 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLKE-------KGYDFEEIP 39 (79)
T ss_pred EEEEECCCCHhHHHHHHHHHH-------cCCCcEEEE
Confidence 346778999999887777753 466655544
No 164
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=72.57 E-value=3.5 Score=33.27 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=18.3
Q ss_pred EEeecCCCCcchHHHHHHHHhcc
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKK 256 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~ 256 (399)
|+.|-..|||||..-.+-|.++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~ 24 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLA 24 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhC
Confidence 45677889999998888877764
No 165
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=72.47 E-value=13 Score=27.05 Aligned_cols=22 Identities=14% Similarity=0.375 Sum_probs=16.5
Q ss_pred EeecCCCCcchHHHHHHHHhcc
Q 015842 235 LCIRRPGCIMCRAEAHQLYAKK 256 (399)
Q Consensus 235 vFyRg~gCP~Cr~el~~L~e~~ 256 (399)
..|=..|||+|+.-...|.+..
T Consensus 3 ~ly~~~~Cp~C~~~~~~L~~~~ 24 (72)
T cd02066 3 VVFSKSTCPYCKRAKRLLESLG 24 (72)
T ss_pred EEEECCCCHHHHHHHHHHHHcC
Confidence 4556789999998877777654
No 166
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=72.42 E-value=4.9 Score=33.40 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=42.3
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCCh-hhHHhhhcC-CCCCceeEeccchHHHHHhCCC
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYI-ESEVKDFWP-RYWGGVVVYDQGMEFFKALGGG 305 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~-e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~ 305 (399)
|.+|-..+||+|+....-|.+.-=.+ ..+=|..+.+ ...+..+.. ...+..-+.......|+.+|..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~-----~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~ 69 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEY-----EFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLA 69 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCc-----EEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCc
Confidence 46889999999998877776642222 3344443222 123555443 3344666777888899999886
No 167
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=72.35 E-value=14 Score=29.69 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=29.7
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC---CCCCceeEeccc
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP---RYWGGVVVYDQG 295 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~---~~l~f~VLsDp~ 295 (399)
|..|-..|||||...-+.|.+.-.++ +.+-|....... .+++.. +.-.+|++-..+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~-----~~i~~~~~~~~~-~~~~~~~~~g~~tvP~I~i~~ 61 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDY-----EEIDVDDDEPEE-AREMVKRGKGQRTVPQIFIGG 61 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCc-----EEEEecCCcHHH-HHHHHHHhCCCCCcCEEEECC
Confidence 45567788999987777666433333 234444444322 333332 345677444333
No 168
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=72.23 E-value=3.5 Score=31.84 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=18.3
Q ss_pred EEeecCCCCcchHHHHHHHHhccc
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKP 257 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~p 257 (399)
|++|-..|||+|..-...|.+..-
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~ 25 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV 25 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC
Confidence 355667999999988887777544
No 169
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=71.91 E-value=4 Score=34.72 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=41.9
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChh-hHHhhhcC-CCCCceeEeccchHHHHHhCCC
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIE-SEVKDFWP-RYWGGVVVYDQGMEFFKALGGG 305 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e-~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~ 305 (399)
|.+|-..+||+|+...+-|.+.-=.+ ..+=|..+.+. .++..+.. ...+..-+.......|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~-----~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 69 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDY-----TAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLK 69 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCce-----EEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcc
Confidence 45788999999998887776642222 23333322221 23555443 3455666667888899999885
No 170
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=71.35 E-value=6.2 Score=31.36 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=25.3
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL 270 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs 270 (399)
|..|-..|||+|..-...|.++..+. .|+...-|-
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~id 37 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVD 37 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEE
Confidence 45667789999999888888876543 366665554
No 171
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=71.11 E-value=6.9 Score=36.05 Aligned_cols=35 Identities=23% Similarity=0.449 Sum_probs=25.2
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE
Q 015842 230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV 269 (399)
Q Consensus 230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaI 269 (399)
++..|++|=-+.||||+..-..+.+ ...++++..+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~-----~~~~v~v~~~ 111 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP-----NADGVTVRIF 111 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh-----ccCceEEEEE
Confidence 5667777778999999999888876 2334555444
No 172
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=70.43 E-value=11 Score=29.32 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=16.7
Q ss_pred EEeecCCCCcchHHHHHHHHhc
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAK 255 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~ 255 (399)
|.+|-..|||+|..--.-|.+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~ 22 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK 22 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc
Confidence 3567789999998877777653
No 173
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=69.17 E-value=4.7 Score=30.92 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=16.1
Q ss_pred EEeecCCCCcchHHHHHHHHh
Q 015842 234 LLCIRRPGCIMCRAEAHQLYA 254 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e 254 (399)
|..|-..|||+|..--..|.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~ 23 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE 23 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 456777999999887776664
No 174
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=69.11 E-value=11 Score=32.96 Aligned_cols=64 Identities=11% Similarity=-0.039 Sum_probs=37.0
Q ss_pred hccCCCEEEEeecCCCCcc--hHH--HHHHHHh-ccchhhhcCCeEEEEecCChhhHHhhhcCCCCCce
Q 015842 226 LWRESPAVLLCIRRPGCIM--CRA--EAHQLYA-KKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGV 289 (399)
Q Consensus 226 L~~~~pvVLvFyRg~gCP~--Cr~--el~~L~e-~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~ 289 (399)
+.+...+||+||--+||+- |+. ..-.|.+ ....+++.++.++-|=.+.-....+.|.-..+|--
T Consensus 23 v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl 91 (120)
T cd03065 23 LKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSI 91 (120)
T ss_pred HHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEE
Confidence 3344567888999999976 993 3323333 33445566788777765544333455543444433
No 175
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=68.13 E-value=7.7 Score=33.53 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=31.2
Q ss_pred cCCCEEEEeecCCCCcchHHHHHHHHhccchh-hhcCCeEEEE
Q 015842 228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF-DALGIQLFAV 269 (399)
Q Consensus 228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef-~alGV~LVaI 269 (399)
.+.|++|..|=-+.||+|+..-..+.+...++ +.-.+.++.+
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~ 52 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFR 52 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEE
Confidence 56689999999999999999988888777665 3334555544
No 176
>PRK10329 glutaredoxin-like protein; Provisional
Probab=67.83 E-value=19 Score=28.94 Aligned_cols=55 Identities=13% Similarity=0.279 Sum_probs=30.1
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccc
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG 295 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~ 295 (399)
|..|=..|||+|..--..| ++.|+..-.|=-+........... ..-..|++...+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~ 58 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAM-------ESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGD 58 (81)
T ss_pred EEEEeCCCCHhHHHHHHHH-------HHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECC
Confidence 4567779999998866555 445777655543322221222222 333556555444
No 177
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=67.46 E-value=8 Score=32.96 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=44.2
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEE--EecCCh-hhHHhhhcC-CCCCceeEeccchHHHHHhCCC
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFA--VLHEYI-ESEVKDFWP-RYWGGVVVYDQGMEFFKALGGG 305 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVa--IspE~~-e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~ 305 (399)
+.+|-..+|++|+....-|.+. |+.... |..+.+ ..+++.+.. ...+..-+.......|+.+++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-------gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~ 70 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-------QIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNID 70 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCC
Confidence 5689999999999877766654 444433 332322 123666654 3346777888999999999986
No 178
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=67.43 E-value=9.2 Score=38.85 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=42.2
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhc--CCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL--GIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG 295 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al--GV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~ 295 (399)
.+..||++|--.||+.|......+.++..++... ++.++.|-.+.-+ +..+.-...|--++.+.+
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--~~~~~i~~~Pt~~~~~~~ 429 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--VPPFEVEGFPTIKFVPAG 429 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--cCCCCccccCEEEEEeCC
Confidence 4566778888999999999999988887777753 5667767654332 222332344444444444
No 179
>PRK10638 glutaredoxin 3; Provisional
Probab=67.42 E-value=5.2 Score=31.72 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=17.4
Q ss_pred EEeecCCCCcchHHHHHHHHhc
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAK 255 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~ 255 (399)
|.+|-..|||||+.-...|.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~ 25 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK 25 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 4577899999998877777654
No 180
>PRK12559 transcriptional regulator Spx; Provisional
Probab=66.46 E-value=10 Score=33.54 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=43.8
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChh-hHHhhhcC-CCCCceeEeccchHHHHHhCCC
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIE-SEVKDFWP-RYWGGVVVYDQGMEFFKALGGG 305 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e-~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~ 305 (399)
|.+|-..+|+.|+...+-|.+.-=.+ +.+=|..+.+. .+++.+.. ...+..-+.......|+.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~-----~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~ 70 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDY-----TEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNIN 70 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCe-----EEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCC
Confidence 57899999999999777766542222 33334433332 23666654 3355566778888999999986
No 181
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=66.09 E-value=7.7 Score=33.10 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=41.6
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE--ecCChh-hHHhhhcC-CCCCceeEeccchHHHHHhCCC
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV--LHEYIE-SEVKDFWP-RYWGGVVVYDQGMEFFKALGGG 305 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaI--spE~~e-~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~ 305 (399)
|.+|-..+||+|+...+-|.+. |+....| .-+.+. ..+..+.. .+....-+.......|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l~~~ 69 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEAN-------GIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRALNTS 69 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-------CCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhCCch
Confidence 3578899999999888777763 4444333 322221 12444433 3345667888899999999974
No 182
>PTZ00062 glutaredoxin; Provisional
Probab=65.93 E-value=4.8 Score=38.40 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=25.0
Q ss_pred chhhccCCCEEEEeecC----CCCcchHHHHHHHHhcc
Q 015842 223 ALELWRESPAVLLCIRR----PGCIMCRAEAHQLYAKK 256 (399)
Q Consensus 223 LsdL~~~~pvVLvFyRg----~gCP~Cr~el~~L~e~~ 256 (399)
+.+|....|+| +|-.+ ++||||+.-..-|.+..
T Consensus 106 v~~li~~~~Vv-vf~Kg~~~~p~C~~C~~~k~~L~~~~ 142 (204)
T PTZ00062 106 IERLIRNHKIL-LFMKGSKTFPFCRFSNAVVNMLNSSG 142 (204)
T ss_pred HHHHHhcCCEE-EEEccCCCCCCChhHHHHHHHHHHcC
Confidence 56777888855 67776 69999998877777653
No 183
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=65.44 E-value=3 Score=42.97 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=58.8
Q ss_pred chhhhhhccccccchhhHhhcCCCCccchh-------hHHHHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhh
Q 015842 5 AMEDFVGNGVLKGQLPKLLEEGWDDVPTLK-------DALEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQF 77 (399)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (399)
+|+||+----|..-+..|+++|||++-++| +.|.|+.==|-+-||.-+..|..-+..-..--.-.+-+|+..-
T Consensus 217 ~~~ewL~~i~le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~nP~Hr~kLL~av~~~~e~d~~~~~~~~~e~~~l~a~i 296 (361)
T KOG4384|consen 217 SLEEWLRRIGLEEYIETLLENGYDTLEDLKDITEEDLEELGIDNPDHRKKLLSAVELLKEIDSGSEQVGENEPNVLSADI 296 (361)
T ss_pred HHHHHHHHhhHHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccccCCCccccchhhh
Confidence 577887777788889999999999999999 7888888889999998888776655544444444455566666
Q ss_pred cccc
Q 015842 78 GMKR 81 (399)
Q Consensus 78 ~~~~ 81 (399)
..++
T Consensus 297 sv~~ 300 (361)
T KOG4384|consen 297 SVLP 300 (361)
T ss_pred cccc
Confidence 6555
No 184
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=61.71 E-value=12 Score=35.04 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=25.6
Q ss_pred EEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842 232 AVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH 271 (399)
Q Consensus 232 vVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp 271 (399)
.||+.|-..||+-|+.....|.++..++. .+++|-|--
T Consensus 104 ~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~a 141 (192)
T cd02988 104 WVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIIS 141 (192)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEh
Confidence 44445556799999998888777766552 466665543
No 185
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=60.72 E-value=7 Score=29.52 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=14.0
Q ss_pred EeecCCCCcchHHHHHHHHh
Q 015842 235 LCIRRPGCIMCRAEAHQLYA 254 (399)
Q Consensus 235 vFyRg~gCP~Cr~el~~L~e 254 (399)
.+|=..|||+|+.....|.+
T Consensus 3 ~ly~~~~C~~C~~~~~~L~~ 22 (77)
T TIGR02200 3 TVYGTTWCGYCAQLMRTLDK 22 (77)
T ss_pred EEEECCCChhHHHHHHHHHH
Confidence 45556999999986555543
No 186
>PRK06184 hypothetical protein; Provisional
Probab=60.11 E-value=90 Score=32.85 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=58.4
Q ss_pred CCCceechhhccC-CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842 217 KTPPMKALELWRE-SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG 295 (399)
Q Consensus 217 ~G~~VsLsdL~~~-~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~ 295 (399)
+|+++++-+++.. +.+||.|--..| +.....|+.++.|.+.. ....|.|++
T Consensus 401 ~~~~~~l~d~~~~~~~~ll~~~~~~~---------------~~~~~~~~~~~~~~~~~-------------~~~~~~d~~ 452 (502)
T PRK06184 401 AGQPTRLFDLFRGPHWTLLAFGAGAA---------------AILARRGLRIHRVGDAA-------------EGGDLVDDA 452 (502)
T ss_pred CCceeeHHHhhCCCcEEEEEecCCch---------------hhhhhcCceEEEecccC-------------CCCceeCCC
Confidence 4778888998874 556665421111 11235577877776432 123578898
Q ss_pred hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHH
Q 015842 296 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAE 375 (399)
Q Consensus 296 r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~ee 375 (399)
..+++.||+.. ++.+||.||| -|.|... ..+.+.
T Consensus 453 g~~~~~~~~~~---------------------------------------~~~~lvRPDg-~v~~~~~------~~~~~~ 486 (502)
T PRK06184 453 GHFRDAYGLTG---------------------------------------GTLVLVRPDG-YVGLIAA------GDDAAA 486 (502)
T ss_pred ccHHHHhcCCC---------------------------------------CcEEEECCCc-ceEEEec------CCCHHH
Confidence 88888776631 2689999996 7877631 136677
Q ss_pred HHHHHHhh
Q 015842 376 VIEICTQL 383 (399)
Q Consensus 376 VLaAl~~l 383 (399)
+++.+..+
T Consensus 487 ~~~~l~~~ 494 (502)
T PRK06184 487 LEAYLARV 494 (502)
T ss_pred HHHHHHHh
Confidence 77777554
No 187
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=59.57 E-value=14 Score=35.51 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=28.2
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV 269 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaI 269 (399)
+++..|+.|=.+-||||+..-.++.++ .+.|+++..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~----~~~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDY----NALGITVRYL 142 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHH----hcCCeEEEEE
Confidence 456778888999999999887777654 3467887665
No 188
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=56.20 E-value=16 Score=32.20 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=37.6
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC---CCCCceeEeccc
Q 015842 230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP---RYWGGVVVYDQG 295 (399)
Q Consensus 230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~---~~l~f~VLsDp~ 295 (399)
++.-+..+=+.|||-|...+-.|.+....-. ++++=.|..+.-......|.. ...|--|+.|.+
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 4566677789999999999999988765421 567767776543333455543 345666888877
No 189
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=54.21 E-value=20 Score=31.75 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=42.4
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEE--EecCChh-hHHhhhcC-CCCCceeEeccchHHHHHhCCC
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFA--VLHEYIE-SEVKDFWP-RYWGGVVVYDQGMEFFKALGGG 305 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVa--IspE~~e-~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~ 305 (399)
|.+|-..+|+.|+....-|.+. |+.... |..+.+. .++..+.. ...+++-+.....+.|+.+++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-------~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~~~lin~~~~~~k~L~~~ 70 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-------QLSYKEQNLGKEPLTKEEILAILTKTENGIESIVSSKNRYAKALDCD 70 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-------CCCeEEEECCCCCCCHHHHHHHHHHhCCCHHHhhccCcHHHHhCCcc
Confidence 5688999999999876666554 444333 3323331 23666654 3445666667888999999975
No 190
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=52.87 E-value=23 Score=34.47 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=26.5
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV 269 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaI 269 (399)
+.+.+|+.|=.+-||||+..-.++.+... .-.+++..|
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~---~g~V~v~~i 153 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD---SGKVQLRHI 153 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh---cCceEEEEE
Confidence 45777888889999999998888765432 222665444
No 191
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=52.72 E-value=27 Score=26.49 Aligned_cols=54 Identities=13% Similarity=-0.063 Sum_probs=30.9
Q ss_pred EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEecc
Q 015842 235 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQ 294 (399)
Q Consensus 235 vFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp 294 (399)
.+|-..|||+|+.-...|.+.--.+ +++-|..........+..+ .-..|++.|.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~-----e~~~v~~~~~~~~~~~~np-~~~vP~L~~~ 55 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITV-----ELREVELKNKPAEMLAASP-KGTVPVLVLG 55 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCc-----EEEEeCCCCCCHHHHHHCC-CCCCCEEEEC
Confidence 4567789999998877777654333 4555544322111222212 2356788765
No 192
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=50.95 E-value=18 Score=31.81 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=24.3
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF 259 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef 259 (399)
+.++.|+.|=-+.||+|...-..+.....+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~ 44 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKL 44 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhC
Confidence 5677778888899999999988886655444
No 193
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=49.96 E-value=1.8e+02 Score=31.02 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=63.4
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842 217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM 296 (399)
Q Consensus 217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r 296 (399)
+|..+++-+|+..+-+||.|--..+ +. +..+. -.....+++++.|+++.... .+...+.|++.
T Consensus 441 ~~~~~~l~dl~g~~f~ll~~~~~~~----~~---~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~d~~~ 503 (547)
T PRK08132 441 DGEPGWLLDLLGGGFTLLLFGDDAA----AA---ALLQA-LAAAALPVRVVAVVPAGAAQ---------AAAGVLEDADG 503 (547)
T ss_pred CCCceEHHHhcCCCEEEEEecCCch----hh---hhhhh-hhccCCceEEEEEecCcccc---------cCcccccCccc
Confidence 4778899999966667766543211 11 11111 12234456667776543210 12346789999
Q ss_pred HHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHH
Q 015842 297 EFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEV 376 (399)
Q Consensus 297 ~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeV 376 (399)
.+++.||... ++.+||.||| -|.|.... .+++.+
T Consensus 504 ~~~~~~~~~~---------------------------------------~~~~LvRPDg-~va~~~~~------~~~~~~ 537 (547)
T PRK08132 504 LAAERYDARP---------------------------------------GTVYLIRPDQ-HVAARWRT------PDAAAV 537 (547)
T ss_pred HHHHHhCCCC---------------------------------------CeEEEECCCc-eEEEEecC------CCHHHH
Confidence 8888776631 2689999996 78877533 367888
Q ss_pred HHHHHhh
Q 015842 377 IEICTQL 383 (399)
Q Consensus 377 LaAl~~l 383 (399)
++.|...
T Consensus 538 ~~~l~~~ 544 (547)
T PRK08132 538 RAALARA 544 (547)
T ss_pred HHHHHHH
Confidence 8877764
No 194
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=49.76 E-value=15 Score=28.02 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=23.4
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEE
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFA 268 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVa 268 (399)
|.+|-.+.||+|...-..|.+.. +....+++++-
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~-~~~~~~~~~~~ 34 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLL-YADDGGVRVVY 34 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHH-hhcCCcEEEEE
Confidence 35677889999999999888865 23333455543
No 195
>PTZ00062 glutaredoxin; Provisional
Probab=49.51 E-value=21 Score=34.02 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=30.9
Q ss_pred chhhccC-CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842 223 ALELWRE-SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 272 (399)
Q Consensus 223 LsdL~~~-~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE 272 (399)
+.++.+. ...+|+||.-.|||-|+..-.-|.++..++. .++.+-|-.+
T Consensus 9 ~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d 57 (204)
T PTZ00062 9 KDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA 57 (204)
T ss_pred HHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc
Confidence 3444442 2567788999999999877666666555442 3566666543
No 196
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=48.97 E-value=40 Score=28.79 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=25.9
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842 230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 273 (399)
Q Consensus 230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~ 273 (399)
+..||+.|...||+-|+.-.--+.++..+... +..+-|--+.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde 62 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE 62 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc
Confidence 35666667899999999876544444333322 4556565443
No 197
>PHA02125 thioredoxin-like protein
Probab=47.38 E-value=42 Score=26.04 Aligned_cols=21 Identities=14% Similarity=0.244 Sum_probs=16.2
Q ss_pred EEeecCCCCcchHHHHHHHHh
Q 015842 234 LLCIRRPGCIMCRAEAHQLYA 254 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e 254 (399)
|+.|-..||+.|+.....|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~ 22 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN 22 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH
Confidence 566778999999987666643
No 198
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=46.95 E-value=11 Score=29.50 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=19.3
Q ss_pred CCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 015842 239 RPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL 270 (399)
Q Consensus 239 g~gCP~Cr~el~~L~e~~pef~alGV~LVaIs 270 (399)
+.+||+|....+.+.+...+. |+++=.+-
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~ 35 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL---GIEVEIID 35 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT---TEEEEEEE
T ss_pred CCCCCCcHHHHHHHHHHHHhc---CCeEEEEE
Confidence 678999997777777665554 55553333
No 199
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=46.91 E-value=41 Score=26.09 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=31.3
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-C-CCCceeEecc
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-R-YWGGVVVYDQ 294 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~-~l~f~VLsDp 294 (399)
+.+|-..+||+|+.-...|.+.-=. .+++-|.+.... ..+|.+ + .-..|++.|.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~-----y~~~~v~~~~~~--~~~~~~~~p~~~vP~l~~~ 57 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELD-----VILYPCPKGSPK--RDKFLEKGGKVQVPYLVDP 57 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCc-----EEEEECCCChHH--HHHHHHhCCCCcccEEEeC
Confidence 4577888999999877777664322 244555433211 233443 2 3466888775
No 200
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=44.81 E-value=87 Score=24.85 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=32.4
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG 295 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~ 295 (399)
|+||-+.+|++|..--..|.+...+. ++.+..|=-..-+.....| ...-||+.-.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---~~~l~~vDI~~d~~l~~~Y---~~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---PFELEEVDIDEDPELFEKY---GYRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---TCEEEEEETTTTHHHHHHS---CTSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---CceEEEEECCCCHHHHHHh---cCCCCEEEEcC
Confidence 57899999999988877887755443 3555555443322222333 23455554444
No 201
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=44.70 E-value=36 Score=32.06 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=30.3
Q ss_pred ccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhcc
Q 015842 215 KTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKK 256 (399)
Q Consensus 215 ~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~ 256 (399)
..++..+...+... ++.++.|.-+-||+|+.....+.+.+
T Consensus 71 ~~~~~~~~~G~~~~--~v~v~~f~d~~Cp~C~~~~~~l~~~~ 110 (244)
T COG1651 71 TPDGKDVVLGNPYA--PVTVVEFFDYTCPYCKEAFPELKKKY 110 (244)
T ss_pred cCCCCcccccCCCC--CceEEEEecCcCccHHHHHHHHHHHh
Confidence 33466666666544 88999999999999988888887743
No 202
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=43.64 E-value=30 Score=24.42 Aligned_cols=58 Identities=19% Similarity=0.023 Sum_probs=30.9
Q ss_pred EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC--CCCCceeEeccchHHH
Q 015842 235 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP--RYWGGVVVYDQGMEFF 299 (399)
Q Consensus 235 vFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~--~~l~f~VLsDp~r~lY 299 (399)
.+|-..+||+|+.-...|....-. .+.+-|....... ..+.+ ..-..|++.+.+..++
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~-----~~~~~~~~~~~~~--~~~~~~~~~~~~P~l~~~~~~~~ 61 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLP-----YELVPVDLGEGEQ--EEFLALNPLGKVPVLEDGGLVLT 61 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC-----cEEEEeCCCCCCC--HHHHhcCCCCCCCEEEECCEEEE
Confidence 356667899998766666655322 3445554433221 12222 2335677777655443
No 203
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=41.06 E-value=27 Score=26.31 Aligned_cols=61 Identities=20% Similarity=0.081 Sum_probs=32.6
Q ss_pred EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-C-CCCceeEeccchHHHH
Q 015842 235 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-R-YWGGVVVYDQGMEFFK 300 (399)
Q Consensus 235 vFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~-~l~f~VLsDp~r~lYk 300 (399)
.+|-..+||+|+.-...|.+.--++ +++-|.....+.....|.+ + .-..|++.|.+..++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~-----e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~e 64 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLEL-----NLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWE 64 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCCC-----EEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEc
Confidence 4677889999986666665543223 4455543221111133332 2 2256788776554443
No 204
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=40.90 E-value=1.5e+02 Score=27.11 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=26.2
Q ss_pred CCCceechhhcc-CCC-EEEEeecCCCCcchHHHHHHHHhcc
Q 015842 217 KTPPMKALELWR-ESP-AVLLCIRRPGCIMCRAEAHQLYAKK 256 (399)
Q Consensus 217 ~G~~VsLsdL~~-~~p-vVLvFyRg~gCP~Cr~el~~L~e~~ 256 (399)
+|.++.|.+.+. ++. -|++|-=..-++-.+..+..|.+.+
T Consensus 14 D~~p~~L~~~~~adGrfrI~vFagd~~~~~~~~~l~~~~~~L 55 (167)
T cd02979 14 DALPVHLGHRLPADGRFRIYVFAGDIAPAQQKSRLTQLCDAL 55 (167)
T ss_pred CCCCHhHhhhccCCCCEEEEEEcCCCCchhHHHHHHHHHHHH
Confidence 688999988765 344 4666654445666766777766554
No 205
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=40.89 E-value=23 Score=32.90 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=33.7
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe--cCChhhHHhhh--------cCCCCCceeEeccchHH
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL--HEYIESEVKDF--------WPRYWGGVVVYDQGMEF 298 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs--pE~~e~~ik~F--------~~~~l~f~VLsDp~r~l 298 (399)
++| |++.+=..||..|+...++--+...-.+-+|-..|.|- .|.....-..| ..++||-.|+.+|+.+.
T Consensus 37 ~Kp-Ifl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p 115 (163)
T PF03190_consen 37 NKP-IFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKP 115 (163)
T ss_dssp T---EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-E
T ss_pred CCc-EEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCe
Confidence 455 55555688999999988865543333333344555553 33322211122 13688999999998754
Q ss_pred H
Q 015842 299 F 299 (399)
Q Consensus 299 Y 299 (399)
.
T Consensus 116 ~ 116 (163)
T PF03190_consen 116 F 116 (163)
T ss_dssp E
T ss_pred e
Confidence 4
No 206
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.81 E-value=36 Score=30.48 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=18.3
Q ss_pred CCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842 240 PGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 272 (399)
Q Consensus 240 ~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE 272 (399)
.|||.|....--+.+....+ ..++.+|-|--+
T Consensus 43 SWCPdCV~AEPvi~~alk~a-p~~~~~v~v~VG 74 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHA-PEDVHFVHVYVG 74 (128)
T ss_pred cCCchHHHhhHHHHHHHHhC-CCceEEEEEEec
Confidence 49999987666555544311 234555555433
No 207
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=40.21 E-value=60 Score=23.98 Aligned_cols=22 Identities=18% Similarity=-0.073 Sum_probs=17.3
Q ss_pred EeecCCCCcchHHHHHHHHhcc
Q 015842 235 LCIRRPGCIMCRAEAHQLYAKK 256 (399)
Q Consensus 235 vFyRg~gCP~Cr~el~~L~e~~ 256 (399)
.+|...+||+|+.-...|.+..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~ 23 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKG 23 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcC
Confidence 4678889999988777777653
No 208
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=38.67 E-value=2.6e+02 Score=29.81 Aligned_cols=104 Identities=16% Similarity=0.070 Sum_probs=60.9
Q ss_pred CCceechhhccCCCEEEEeecCCCCcchHHHHHHHH-hccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842 218 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLY-AKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM 296 (399)
Q Consensus 218 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~-e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r 296 (399)
|....+.++...+.++|.| +|.- ...+. .....++..|+.+|.+.+..... . -..+++.|++.
T Consensus 427 ~~~~~~d~~~~~~~~ll~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~d~~g 490 (538)
T PRK06183 427 GDRGLLDDVLGPGFAVLGW----GCDP----LAGLSDEQRARWRALGARFVQVVPAVQAH----T----AQDDHDSDVDG 490 (538)
T ss_pred CCcccchhccCCceEEEEe----cCCc----hhcCCHHHHHHHHHcCCeEEEEecccccc----c----CCCceeecCCc
Confidence 3344566677667777765 2210 11111 11233777899999998764321 0 13457889998
Q ss_pred HHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHH
Q 015842 297 EFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEV 376 (399)
Q Consensus 297 ~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeV 376 (399)
.+.+.|+.. -++.+||.||+ -|.+. ....+.+.+
T Consensus 491 ~~~~~~~~~---------------------------------------~~~~~lvRPD~-~v~~~------~~~~~~~~~ 524 (538)
T PRK06183 491 ALRAWLARH---------------------------------------GASAVLLRPDR-YVAAA------ADAQTLGAL 524 (538)
T ss_pred hHHHHHHhC---------------------------------------CCEEEEECCCE-EEEEe------eCHHHHHHH
Confidence 888766542 02689999995 44432 233466777
Q ss_pred HHHHHhh
Q 015842 377 IEICTQL 383 (399)
Q Consensus 377 LaAl~~l 383 (399)
++++...
T Consensus 525 ~~~l~~~ 531 (538)
T PRK06183 525 LAALAAL 531 (538)
T ss_pred HHHHHhh
Confidence 7777553
No 209
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=37.88 E-value=24 Score=29.87 Aligned_cols=66 Identities=8% Similarity=0.131 Sum_probs=41.3
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChh-hHHhhhcCCCCCceeEeccchHHHHHhCCC
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIE-SEVKDFWPRYWGGVVVYDQGMEFFKALGGG 305 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e-~~ik~F~~~~l~f~VLsDp~r~lYkaLGl~ 305 (399)
|.+|-.++|+.|+....-|.+.-=.+ +++=|.-+.+. .+++.+.. .+...-+.......|+.+|+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~-----~~~di~~~p~s~~eL~~~l~-~~g~~~li~~~~~~yk~l~l~ 67 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAY-----TFHDYRKDGLDAATLERWLA-KVGWETLLNKRGTTWRKLDDA 67 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCe-----EEEecccCCCCHHHHHHHHH-HhChHHHHccCchHHHhCChh
Confidence 46899999999999887777653222 33334433331 23555553 223455667778999998885
No 210
>PF14968 CCDC84: Coiled coil protein 84
Probab=36.89 E-value=9.3 Score=39.34 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=15.3
Q ss_pred eecCCCCcchHHHHHHHHh
Q 015842 236 CIRRPGCIMCRAEAHQLYA 254 (399)
Q Consensus 236 FyRg~gCP~Cr~el~~L~e 254 (399)
-=++|||+||..++.+...
T Consensus 55 ~~~~fWC~fC~~ev~~~~s 73 (336)
T PF14968_consen 55 HRNRFWCVFCDCEVREHDS 73 (336)
T ss_pred ccceeEeeCccchhhhccc
Confidence 3467899999999988744
No 211
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=35.35 E-value=2.2e+02 Score=31.54 Aligned_cols=40 Identities=5% Similarity=-0.135 Sum_probs=24.6
Q ss_pred CCCceechhhcc-C-CCEEEEeecCCCCcchHHHHHHHHhcc
Q 015842 217 KTPPMKALELWR-E-SPAVLLCIRRPGCIMCRAEAHQLYAKK 256 (399)
Q Consensus 217 ~G~~VsLsdL~~-~-~pvVLvFyRg~gCP~Cr~el~~L~e~~ 256 (399)
++.++-|.+.+. + +..|++|--..-.+.....+..|.+.+
T Consensus 479 d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l 520 (634)
T PRK08294 479 DAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFL 520 (634)
T ss_pred CCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHH
Confidence 577888876653 4 445666654445567766666665543
No 212
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=33.29 E-value=91 Score=28.56 Aligned_cols=90 Identities=12% Similarity=0.077 Sum_probs=49.3
Q ss_pred CCCceechhhcc-CC-CEEEEeecCCCCcchHHHHHHHHhcc-------chhhhc------CCeEEEEecCChhh-HHhh
Q 015842 217 KTPPMKALELWR-ES-PAVLLCIRRPGCIMCRAEAHQLYAKK-------PIFDAL------GIQLFAVLHEYIES-EVKD 280 (399)
Q Consensus 217 ~G~~VsLsdL~~-~~-pvVLvFyRg~gCP~Cr~el~~L~e~~-------pef~al------GV~LVaIspE~~e~-~ik~ 280 (399)
+|.++.|.+.+. ++ .-|++|-=..-.+-|...+..|.+.. ..|... -+.++.|.+....+ ++.+
T Consensus 46 D~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~~~~~~I~~~~~~~~e~~d 125 (169)
T PF07976_consen 46 DGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSVFDVLLIHSSPRDEVELFD 125 (169)
T ss_dssp TTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSSEEEEEEESS-CCCS-GGG
T ss_pred CCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCeeEEEEEecCCCCceeHHH
Confidence 699999988775 34 45777776666666655555555433 122222 27788888664322 1232
Q ss_pred hcC--------CCCC-ceeEecc------chHHHHHhCCCc
Q 015842 281 FWP--------RYWG-GVVVYDQ------GMEFFKALGGGK 306 (399)
Q Consensus 281 F~~--------~~l~-f~VLsDp------~r~lYkaLGl~r 306 (399)
+=+ ..+. ..||+|. ...+|+.||+.+
T Consensus 126 lP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid~ 166 (169)
T PF07976_consen 126 LPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGIDR 166 (169)
T ss_dssp S-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBBT
T ss_pred CcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCCc
Confidence 221 1222 3499996 489999999863
No 213
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.27 E-value=97 Score=28.58 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=40.5
Q ss_pred cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842 228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF 298 (399)
Q Consensus 228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l 298 (399)
.+.||||.| .-.||.-|+.-.-.|.++..+. +--++++-|=-++..+...+|.=..+|--|+-+.+.+.
T Consensus 60 S~~PVlVdF-~A~WCgPCk~l~P~l~~~~~~~-~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 60 SDVPVLVDF-HAEWCGPCKMLGPILEELVSEY-AGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred cCCCEEEEE-ecCcCccHhHhhHHHHHHHHhh-cCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe
Confidence 457888776 4679999999888777766555 22345555543333222344433455555555555444
No 214
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=33.04 E-value=58 Score=35.37 Aligned_cols=74 Identities=15% Similarity=0.042 Sum_probs=51.2
Q ss_pred echhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc--CCeEEEEecCChhhHHhhhcC-CCCCceeEeccc
Q 015842 222 KALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL--GIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG 295 (399)
Q Consensus 222 sLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al--GV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~ 295 (399)
.+.++......|++=|--+||.-|...+-++.++...+.+. .+.|.=|=...-.....+|.- +|..-.|+-+-.
T Consensus 34 nf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~ 110 (493)
T KOG0190|consen 34 NFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGR 110 (493)
T ss_pred cHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCC
Confidence 36777778888888888999999999999999999999987 666666643322223344442 333334666555
No 215
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=32.37 E-value=43 Score=25.54 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=17.7
Q ss_pred EEeecCCCCcchHHHHHHHHhcc
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKK 256 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~ 256 (399)
+.+|-..+||+|+.-...|.+.-
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~g 24 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHG 24 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC
Confidence 35677789999999887777653
No 216
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=31.64 E-value=78 Score=26.45 Aligned_cols=54 Identities=13% Similarity=0.030 Sum_probs=32.8
Q ss_pred CCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-C-CCCceeEeccchHHHH
Q 015842 239 RPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-R-YWGGVVVYDQGMEFFK 300 (399)
Q Consensus 239 g~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~-~l~f~VLsDp~r~lYk 300 (399)
...||||+.-.-.|.+.. .-.+++-|-+.... ..|.+ + +=..|++.|.+..+|.
T Consensus 19 ~g~cpf~~rvrl~L~eKg-----i~ye~~~vd~~~~p---~~~~~~nP~g~vPvL~~~~~~i~e 74 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKG-----VVFNVTTVDMKRKP---EDLKDLAPGTQPPFLLYNGEVKTD 74 (91)
T ss_pred CCCChhHHHHHHHHHHCC-----CceEEEEeCCCCCC---HHHHHhCCCCCCCEEEECCEEecC
Confidence 378999999988888752 12355666554433 23443 1 1245688887665554
No 217
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=30.67 E-value=63 Score=24.06 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=16.6
Q ss_pred EeecCCCCcchHHHHHHHHhcc
Q 015842 235 LCIRRPGCIMCRAEAHQLYAKK 256 (399)
Q Consensus 235 vFyRg~gCP~Cr~el~~L~e~~ 256 (399)
.+|-..+||+|+.-...|.+.-
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~g 23 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKG 23 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcC
Confidence 4566789999998877776543
No 218
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=30.14 E-value=53 Score=24.83 Aligned_cols=24 Identities=21% Similarity=-0.039 Sum_probs=18.5
Q ss_pred EEEeecCCCCcchHHHHHHHHhcc
Q 015842 233 VLLCIRRPGCIMCRAEAHQLYAKK 256 (399)
Q Consensus 233 VLvFyRg~gCP~Cr~el~~L~e~~ 256 (399)
++.+|....||+|+.-.-.|...-
T Consensus 1 ~~~Ly~~~~s~~s~~v~~~l~~~~ 24 (76)
T cd03053 1 VLKLYGAAMSTCVRRVLLCLEEKG 24 (76)
T ss_pred CeEEEeCCCChhHHHHHHHHHHcC
Confidence 357888999999988777776643
No 219
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=30.04 E-value=50 Score=25.61 Aligned_cols=61 Identities=10% Similarity=-0.085 Sum_probs=32.9
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-C-CCCceeEeccchHHH
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-R-YWGGVVVYDQGMEFF 299 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~-~l~f~VLsDp~r~lY 299 (399)
+.+|...+||+|+.-.-.|.+.--. .+++.|.....+..-..|.+ + .-..|+|.|.+..++
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~-----~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~ 63 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLR-----CEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIIC 63 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCC-----CEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEE
Confidence 3578889999997666566554322 35555543221111123443 2 235678887654433
No 220
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=29.09 E-value=91 Score=24.91 Aligned_cols=56 Identities=9% Similarity=-0.100 Sum_probs=30.9
Q ss_pred EEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEecc
Q 015842 233 VLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQ 294 (399)
Q Consensus 233 VLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp 294 (399)
.+.+|-...||+|+.-...|...--.+ +++-|.............+ .-..|++.+.
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~-----~~~~v~~~~~~~~~~~~np-~~~vPvL~~~ 73 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPH-----EVININLKDKPDWFLEKNP-QGKVPALEID 73 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCC-----eEEEeCCCCCcHHHHhhCC-CCCcCEEEEC
Confidence 356677888999998777777653333 4444443222111222212 3356888765
No 221
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=29.09 E-value=54 Score=28.03 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=27.2
Q ss_pred CCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 015842 240 PGCIMCRAEAHQLYAKKPIFDALGIQLFAVL 270 (399)
Q Consensus 240 ~gCP~Cr~el~~L~e~~pef~alGV~LVaIs 270 (399)
.|||.|+.-+.+..+....|++- |+||++.
T Consensus 5 ~gCPG~v~CfKA~ne~~g~Fe~y-v~viaf~ 34 (101)
T COG5561 5 YGCPGEVRCFKAANEGEGKFEEY-VRVIAFI 34 (101)
T ss_pred cCCCchHHHHHHHhccccccccc-EEEEEEE
Confidence 58999999999999999999987 9999975
No 222
>PF11549 Sec31: Protein transport protein SEC31; InterPro: IPR021614 Sec31 is involved in COPII coat formation as it forms through the sequential binding of three cytoplasmic proteins: Sar1, Sec23/24 and Sec13/31. Sec13/31 is recruited by the pre-budding complex and polymerisation of Sec13/31 occurs to form an octahedral cage that is the outer shell of the COPII coat []. Sec13/31 is a hetero-tetramer which is organised as a linear array of alpha-solenoid and beta-propeller domains to form a rod in which twenty-four copies assemble to form the COPII cub-octahedron []. ; PDB: 2QTV_D.
Probab=28.30 E-value=21 Score=27.11 Aligned_cols=21 Identities=43% Similarity=0.974 Sum_probs=8.0
Q ss_pred ccccccchhhH---hhcCCCCccc
Q 015842 12 NGVLKGQLPKL---LEEGWDDVPT 32 (399)
Q Consensus 12 ~~~~~~~~~~~---~~~~~~~~~~ 32 (399)
..++-||-+.| .+|||.|.|-
T Consensus 8 ~~~~SGQ~PhlNkkaNdGWNDLpl 31 (51)
T PF11549_consen 8 PNVYSGQTPHLNKKANDGWNDLPL 31 (51)
T ss_dssp -----SSS-TT-HHHHS-TT---S
T ss_pred cccccCcCCcccccccCcccccch
Confidence 45667777766 4599999984
No 223
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=27.91 E-value=61 Score=24.02 Aligned_cols=59 Identities=14% Similarity=-0.081 Sum_probs=31.0
Q ss_pred EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-C-CCCceeEeccchHH
Q 015842 235 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-R-YWGGVVVYDQGMEF 298 (399)
Q Consensus 235 vFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~-~l~f~VLsDp~r~l 298 (399)
.+|...+||+|+.-...|...--++ +.+-|.....+.....|.+ + .-..|++.|.+..+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i 62 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIPY-----EWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVL 62 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCc-----EEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEE
Confidence 4677889999987666666543333 4444543211111123332 2 23567777765433
No 224
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=27.32 E-value=6.6e+02 Score=25.35 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=68.6
Q ss_pred ccCCCceechhhccCCCEEE-EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEec
Q 015842 215 KTKTPPMKALELWRESPAVL-LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYD 293 (399)
Q Consensus 215 ~~~G~~VsLsdL~~~~pvVL-vFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsD 293 (399)
+.+|++|-.+.- .++.+.- +|+|.. -....+.+|++..|++. .+++++.|+-+.. -.+...++.|..+-|
T Consensus 89 n~~G~pvl~s~~-~~~~~~gvf~s~qe---dA~afL~~lk~~~p~l~-~~~kV~pvsL~~v----Ykl~~e~l~F~fiP~ 159 (270)
T TIGR00995 89 NAQNEFVLASDN-DGEKSIGLLCFRQE---DAEAFLAQLRKRKPEVG-SQAKVVPITLDQV----YKLKVEGIGFRFLPD 159 (270)
T ss_pred cCCCCeEEEECC-CCCceEEEEECCHH---HHHHHHHHHHhhCcccc-CCceEEEEEHHHH----HHHhhcCccEEEeCC
Confidence 346887777642 2333333 333321 13345666667778885 6899999985543 222223455555555
Q ss_pred cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCH
Q 015842 294 QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPL 373 (399)
Q Consensus 294 p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~ 373 (399)
+.. ..+..... .+-.....|=.+-+.+-++|.++++.+.=-|.++
T Consensus 160 ~~q--------------------------V~~A~~ll-~~~~~~~~GVPlF~~~~Lti~~~n~~~iP~FF~K-------- 204 (270)
T TIGR00995 160 PAQ--------------------------IKNALELP-AANSEYFDGVPVFQSGLLVVQKKNERYCPVYFSK-------- 204 (270)
T ss_pred HHH--------------------------HHHHHHHH-hcCccCCCCccEEeecceEEEeCCeEEEeeEeeH--------
Confidence 432 22221111 0100001122222347778888877777677666
Q ss_pred HHHHHHHHhhhhhhccc
Q 015842 374 AEVIEICTQLQDQQRDQ 390 (399)
Q Consensus 374 eeVLaAl~~l~~~~~~~ 390 (399)
+++-+.+.+++.++.+-
T Consensus 205 edlq~~L~~~kkq~p~l 221 (270)
T TIGR00995 205 EDIEQELSKFKRESPGM 221 (270)
T ss_pred HHHHHHHHHHhHhCcCc
Confidence 66766777776666433
No 225
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=27.13 E-value=51 Score=32.68 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=29.1
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842 223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 261 (399)
Q Consensus 223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a 261 (399)
-.++..++++.|+|.=-.|||||-.+-=.|...+..|-.
T Consensus 51 n~d~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 51 NQDLAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CcccCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 356777888888888888999998777777666555533
No 226
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=25.44 E-value=1.1e+02 Score=33.14 Aligned_cols=40 Identities=8% Similarity=0.073 Sum_probs=27.1
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 015842 229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL 270 (399)
Q Consensus 229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs 270 (399)
++|+-|.+|=..|||+|..-.+.+.+...+.. |+..-.|-
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~ 514 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMID 514 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEE
Confidence 57998999999999999976666655432211 45544443
No 227
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=25.06 E-value=39 Score=31.20 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=24.1
Q ss_pred cchhhHHHHhhhccchhhhhhhHHHHHcCCChHHHhccC-cccchhhhc
Q 015842 31 PTLKDALEIRSYLHDRALMQYADIFEASGKSLPELLNLS-TGDLSSQFG 78 (399)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 78 (399)
||+.|+.+|.+|+|+ |-||..|..++ +.+|..=|+
T Consensus 5 ~~~~~~~~~~~f~~~-------------Ggsl~~l~~~~~~~~l~~lY~ 40 (157)
T PRK15363 5 PTLQQAHDTMRFFRR-------------GGSLRMLLDDDVTQPLNTLYR 40 (157)
T ss_pred chhhhHHHHHHHHHc-------------CCcHHHHHCCChHHHHHHHHH
Confidence 677777777777776 66777777777 666665553
No 228
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=24.34 E-value=1.5e+02 Score=22.42 Aligned_cols=61 Identities=8% Similarity=-0.144 Sum_probs=32.0
Q ss_pred EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHH
Q 015842 235 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFK 300 (399)
Q Consensus 235 vFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYk 300 (399)
.+|-...||+|+.-.-.|....-.+ +++.+.+...........+..-..|++.|.+..++.
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl~~-----~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~e 62 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGVPY-----EYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICE 62 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCCCC-----EEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeeh
Confidence 4566678999988777776653333 444444332111122222222356788776544433
No 229
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=24.05 E-value=28 Score=39.89 Aligned_cols=83 Identities=25% Similarity=0.290 Sum_probs=62.6
Q ss_pred hHHHHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhhccccccccccccccCCCCCCCCCCCccccccCcCcCC
Q 015842 35 DALEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKSDTLTARNNSSIPS 114 (399)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (399)
+.=|+++||---+|-+|.|.++..-+.=+||+-+-..||-.---||-|||-|-+ |++.=...-.-++|+..+-..
T Consensus 999 ~seeV~awLe~~~LsEy~d~f~kndirGseLl~L~rrDLkdlgvtkVGhvkril-----~aIkdl~~~~~~a~~a~~~~~ 1073 (1099)
T KOG1170|consen 999 TSEEVCAWLESIGLSEYKDTFRKNDIRGSELLHLERRDLKDLGVTKVGHVKRIL-----SAIKDLRAQNQRARRAQARKK 1073 (1099)
T ss_pred cHHHHHHHHhccccchhhhhhhccCcccceeeecCcccccccchhhhHHHHHHH-----HHHHHHHhcchhhhhhhhhhh
Confidence 667999999999999999999999888899999999999888889999999976 444433221234454444444
Q ss_pred CCCCCCcc
Q 015842 115 RNNSIYKS 122 (399)
Q Consensus 115 ~~~~~~~~ 122 (399)
|.+--.+|
T Consensus 1074 ~~~~~~~~ 1081 (1099)
T KOG1170|consen 1074 RVAKDYKP 1081 (1099)
T ss_pred ccccccCC
Confidence 44444444
No 230
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=23.15 E-value=1.7e+02 Score=22.29 Aligned_cols=56 Identities=20% Similarity=0.041 Sum_probs=32.4
Q ss_pred ecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842 237 IRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF 298 (399)
Q Consensus 237 yRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l 298 (399)
|...+||+|+.-.-.|....=. .+++-|.++.......... ..-..|++.|.+..+
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i~-----~~~~~v~~~~~~~~~~~~~-p~~~vPvL~~~g~~l 57 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGIP-----YELVPVDPEEKRPEFLKLN-PKGKVPVLVDDGEVL 57 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTEE-----EEEEEEBTTSTSHHHHHHS-TTSBSSEEEETTEEE
T ss_pred CCcCCChHHHHHHHHHHHcCCe-----EEEeccCcccchhHHHhhc-ccccceEEEECCEEE
Confidence 5668999999887777654322 4666776655422222222 233567777665433
No 231
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=22.69 E-value=94 Score=28.09 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=27.4
Q ss_pred cCCCCcccceEEEEecCCCcEEEEEecCCCCCCC
Q 015842 338 FKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWA 371 (399)
Q Consensus 338 ~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDra 371 (399)
..||....-|.|.-++.|+.|.|.|.++. +.|+
T Consensus 87 ~~GD~V~f~GeYe~n~kggvIHWTH~dp~-~~h~ 119 (131)
T PF11948_consen 87 QKGDQVEFYGEYEWNPKGGVIHWTHHDPR-GRHP 119 (131)
T ss_pred CCCCEEEEEEEEEECCCCCEEEeeccCCC-CCCC
Confidence 35888788899999998889999999885 5555
No 232
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=22.53 E-value=1.9e+02 Score=27.86 Aligned_cols=55 Identities=15% Similarity=0.318 Sum_probs=39.7
Q ss_pred ccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCC
Q 015842 227 WRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWG 287 (399)
Q Consensus 227 ~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~ 287 (399)
+..+..+.+|++ --|+-|-..++.|... ...+.|+.|+.+.-+..|..|.. +..+
T Consensus 106 ~~~~~rlalFvk-d~C~~C~~~~~~l~a~-----~~~~Diylvgs~~dD~~Ir~WA~~~~Id 161 (200)
T TIGR03759 106 LQGGGRLALFVK-DDCVACDARVQRLLAD-----NAPLDLYLVGSQGDDERIRQWANRHQID 161 (200)
T ss_pred cCCCCeEEEEeC-CCChHHHHHHHHHhcC-----CCceeEEEecCCCCHHHHHHHHHHcCCC
Confidence 445678889999 8999999999999763 33557888875444455888774 4443
No 233
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=22.26 E-value=1.6e+02 Score=27.75 Aligned_cols=57 Identities=21% Similarity=0.142 Sum_probs=25.5
Q ss_pred CEEEEeecCCCCcchHH-HHHHHHhccchhhhcCCeEEEEe-cCChhhHHhhhcC----CCCCceeEeccc
Q 015842 231 PAVLLCIRRPGCIMCRA-EAHQLYAKKPIFDALGIQLFAVL-HEYIESEVKDFWP----RYWGGVVVYDQG 295 (399)
Q Consensus 231 pvVLvFyRg~gCP~Cr~-el~~L~e~~pef~alGV~LVaIs-pE~~e~~ik~F~~----~~l~f~VLsDp~ 295 (399)
--|+.| ||+++. ++.++.+ ++.+.|+.+|+|+ ...-+..+.++.. ..++-+++-|++
T Consensus 83 DRVllf-----s~~~~~~e~~~~a~---~L~~~gi~~v~Vs~~~~~~~~l~~~~~~~Idl~~~~~LvP~Ed 145 (172)
T PF10740_consen 83 DRVLLF-----SPFSTDEEAVALAK---QLIEQGIPFVGVSPNKPDEEDLEDLADVHIDLKLPKPLVPTED 145 (172)
T ss_dssp -EEEEE-----ES-S--HHHHHHHH---HHHHHT--EEEEE-SS---TTGGG-SSS-EE----S-SEE-TT
T ss_pred ceEEEE-----eCCCCCHHHHHHHH---HHHHCCCCEEEEEecCCCCCchhhhhhheeecccCCCcccCCC
Confidence 346666 455555 5555543 5677899999999 3333333444442 346667777777
No 234
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=22.07 E-value=85 Score=27.89 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=26.8
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL 270 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs 270 (399)
|.||--+-||+|......|.++..+.....+...-+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 6788899999999999999887777633333333343
No 235
>PHA01812 hypothetical protein
Probab=21.36 E-value=26 Score=29.91 Aligned_cols=28 Identities=25% Similarity=0.578 Sum_probs=20.9
Q ss_pred cccchhhhccccccccc--cccccCCCCCC
Q 015842 70 TGDLSSQFGMKRGHMAR--FKDRTSACSDP 97 (399)
Q Consensus 70 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 97 (399)
-++|..+||||+..+.| |.+.++.-+.|
T Consensus 30 lselvekygmkkeyivralftnkeskfgeq 59 (122)
T PHA01812 30 LSELVEKYGMKKEYIVRALFTNKESKFGEQ 59 (122)
T ss_pred HHHHHHHhCccHHHHHHHHHcCcccccccc
Confidence 35789999999999876 66666655443
No 236
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=21.32 E-value=67 Score=26.66 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=20.1
Q ss_pred cCCCCcchHHHHHHHHhccchhhhcCCeEEEE
Q 015842 238 RRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV 269 (399)
Q Consensus 238 Rg~gCP~Cr~el~~L~e~~pef~alGV~LVaI 269 (399)
-...||+|+..++-+....+ ...++++.+
T Consensus 3 YDg~C~lC~~~~~~l~~~d~---~~~l~~~~~ 31 (114)
T PF04134_consen 3 YDGDCPLCRREVRFLRRRDR---GGRLRFVDI 31 (114)
T ss_pred ECCCCHhHHHHHHHHHhcCC---CCCEEEEEC
Confidence 35789999999999988732 123455555
No 237
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=20.92 E-value=60 Score=28.98 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=24.6
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEE
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLF 267 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LV 267 (399)
|.||--+.||+|..--..|.++..++. .++++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~-~~~~v~ 35 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG-GGIEVE 35 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC-CCceEE
Confidence 568889999999998888887766652 345544
No 238
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=20.91 E-value=90 Score=26.62 Aligned_cols=64 Identities=23% Similarity=0.288 Sum_probs=41.5
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEE--EecCChh-hHHhhhcCCCCCcee---EeccchHHHHHhCCC
Q 015842 234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFA--VLHEYIE-SEVKDFWPRYWGGVV---VYDQGMEFFKALGGG 305 (399)
Q Consensus 234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVa--IspE~~e-~~ik~F~~~~l~f~V---LsDp~r~lYkaLGl~ 305 (399)
|.||-.+.|.-|+....-|.+. |+.... |..+.+. .+++.+.. .++.+. +.......|+.+|+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~-------~i~~~~~di~~~p~t~~el~~~l~-~~g~~~~~~lin~~~~~~~~l~~~ 70 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDK-------GIEPEVVKYLKNPPTKSELEAIFA-KLGLTVAREMIRTKEALYKELGLS 70 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-------CCCeEEEeccCCCcCHHHHHHHHH-HcCCchHHHHHhcCCcHHHHcCCC
Confidence 4689999999999988777765 344333 3333332 23555554 223333 678888999999886
No 239
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=20.63 E-value=75 Score=31.85 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=18.5
Q ss_pred eecCCCCcchH--HHHHHHHhccchhhhcCCeEEEEe
Q 015842 236 CIRRPGCIMCR--AEAHQLYAKKPIFDALGIQLFAVL 270 (399)
Q Consensus 236 FyRg~gCP~Cr--~el~~L~e~~pef~alGV~LVaIs 270 (399)
.+.|.|||.|- .-+..+.+...++.-..-..|.|+
T Consensus 5 ~~~~~~CpGCg~~~i~~~~~~a~~~l~~~p~d~ivvs 41 (280)
T PRK11869 5 KYDIAWCPGCGNFGIRNALMKALSELNLKPRQVVIVS 41 (280)
T ss_pred cCCCCCCcCCCCHHHHHHHHHHHHHcCCCCCCEEEEe
Confidence 46789999994 334444444444322222344444
Done!